LOCUS       DARGEX010000001        77766 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.001, whole genome shotgun sequence.
ACCESSION   DARGEX010000001 DARGEX010000000
VERSION     DARGEX010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 77766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 77766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..77766
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.001"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            57..317
                     /gene="groES"
                     /locus_tag="SF010_000001"
     CDS             57..317
                     /gene="groES"
                     /locus_tag="SF010_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG8228977.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            338..1975
                     /gene="groL"
                     /locus_tag="SF010_000002"
     CDS             338..1975
                     /gene="groL"
                     /locus_tag="SF010_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG8228978.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(2018..3208)
                     /gene="dccS"
                     /locus_tag="SF010_000003"
     CDS             complement(2018..3208)
                     /gene="dccS"
                     /locus_tag="SF010_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8228979.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     YQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(3201..3866)
                     /gene="dccR"
                     /locus_tag="SF010_000004"
     CDS             complement(3201..3866)
                     /gene="dccR"
                     /locus_tag="SF010_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG8228980.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAREALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            4014..4613
                     /locus_tag="SF010_000005"
     CDS             4014..4613
                     /locus_tag="SF010_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8228981.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLATKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKNIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEYPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            4624..4872
                     /locus_tag="SF010_000006"
     CDS             4624..4872
                     /locus_tag="SF010_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG8228982.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(4961..5035)
                     /locus_tag="SF010_000007"
     tRNA            complement(4961..5035)
                     /locus_tag="SF010_000007"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5001..5003),aa:Asn,seq:gtt)
     gene            complement(5128..6375)
                     /locus_tag="SF010_000008"
     CDS             complement(5128..6375)
                     /locus_tag="SF010_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8228983.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(6372..7046)
                     /locus_tag="SF010_000009"
     CDS             complement(6372..7046)
                     /locus_tag="SF010_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8228984.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(7122..8540)
                     /gene="htrA"
                     /locus_tag="SF010_000010"
     CDS             complement(7122..8540)
                     /gene="htrA"
                     /locus_tag="SF010_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG8228985.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEARLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            8740..9633
                     /locus_tag="SF010_000011"
     CDS             8740..9633
                     /locus_tag="SF010_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG8228986.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            9649..10023
                     /gene="hspR"
                     /locus_tag="SF010_000012"
     CDS             9649..10023
                     /gene="hspR"
                     /locus_tag="SF010_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG8228987.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNNFDLIFYEKK"
     gene            10029..11654
                     /locus_tag="SF010_000013"
     CDS             10029..11654
                     /locus_tag="SF010_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8228988.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            11664..11996
                     /locus_tag="SF010_000014"
     CDS             11664..11996
                     /locus_tag="SF010_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8228989.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            11993..12613
                     /locus_tag="SF010_000015"
     CDS             11993..12613
                     /locus_tag="SF010_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8228990.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            12669..14663
                     /locus_tag="SF010_000016"
     CDS             12669..14663
                     /locus_tag="SF010_000016"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG8228991.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWSNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSHNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            14660..15481
                     /locus_tag="SF010_000017"
     CDS             14660..15481
                     /locus_tag="SF010_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8228992.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGEFIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            15478..16428
                     /locus_tag="SF010_000018"
     CDS             15478..16428
                     /locus_tag="SF010_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG8228993.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFKVSLKNFFCKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(16425..17399)
                     /locus_tag="SF010_000019"
     CDS             complement(16425..17399)
                     /locus_tag="SF010_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8228994.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            17455..18228
                     /locus_tag="SF010_000020"
     CDS             17455..18228
                     /locus_tag="SF010_000020"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG8228995.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFGLKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            18225..19319
                     /gene="pdxA"
                     /locus_tag="SF010_000021"
     CDS             18225..19319
                     /gene="pdxA"
                     /locus_tag="SF010_000021"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG8228996.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGRGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(19309..19911)
                     /locus_tag="SF010_000022"
     CDS             complement(19309..19911)
                     /locus_tag="SF010_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8228997.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            20024..21223
                     /locus_tag="SF010_000023"
     CDS             20024..21223
                     /locus_tag="SF010_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8228998.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            21279..21599
                     /gene="ciaC"
                     /locus_tag="SF010_000024"
     CDS             21279..21599
                     /gene="ciaC"
                     /locus_tag="SF010_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG8228999.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            21783..22805
                     /locus_tag="SF010_000025"
     CDS             21783..22805
                     /locus_tag="SF010_000025"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG8229000.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            22802..23704
                     /locus_tag="SF010_000026"
     CDS             22802..23704
                     /locus_tag="SF010_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG8229001.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(23701..24897)
                     /locus_tag="SF010_000027"
     CDS             complement(23701..24897)
                     /locus_tag="SF010_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229002.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(24899..26701)
                     /gene="uvrC"
                     /locus_tag="SF010_000028"
     CDS             complement(24899..26701)
                     /gene="uvrC"
                     /locus_tag="SF010_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG8229003.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(26694..27188)
                     /locus_tag="SF010_000029"
     CDS             complement(26694..27188)
                     /locus_tag="SF010_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229004.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            27327..28862
                     /gene="guaA"
                     /locus_tag="SF010_000030"
     CDS             27327..28862
                     /gene="guaA"
                     /locus_tag="SF010_000030"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG8229005.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPGLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            28948..30408
                     /locus_tag="SF010_000031"
     CDS             28948..30408
                     /locus_tag="SF010_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229006.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQEILAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            30648..31898
                     /gene="purD"
                     /locus_tag="SF010_000032"
     CDS             30648..31898
                     /gene="purD"
                     /locus_tag="SF010_000032"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG8229007.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            31895..32347
                     /locus_tag="SF010_000033"
     CDS             31895..32347
                     /locus_tag="SF010_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8229008.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            32337..34385
                     /locus_tag="SF010_000034"
     CDS             32337..34385
                     /locus_tag="SF010_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG8229009.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            34455..36614
                     /locus_tag="SF010_000035"
     CDS             34455..36614
                     /locus_tag="SF010_000035"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG8229010.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHEKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPINIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKKII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            36611..37093
                     /locus_tag="SF010_000036"
     CDS             36611..37093
                     /locus_tag="SF010_000036"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG8229011.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANNLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(37136..37798)
                     /locus_tag="SF010_000037"
     CDS             complement(37136..37798)
                     /locus_tag="SF010_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG8229012.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(37816..39000)
                     /locus_tag="SF010_000038"
     CDS             complement(37816..39000)
                     /locus_tag="SF010_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229013.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGIYFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            39054..39509
                     /locus_tag="SF010_000039"
     CDS             39054..39509
                     /locus_tag="SF010_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG8229014.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            39761..41035
                     /locus_tag="SF010_000040"
     CDS             39761..41035
                     /locus_tag="SF010_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HEG8229015.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFSAAIADNFKAFIQFDYNAVDGGTGVDNVTN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAADSFMAAEQGADLLGHSTTSTTQATAPFKVDSVGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(41150..42271)
                     /gene="dnaJ"
                     /locus_tag="SF010_000041"
     CDS             complement(41150..42271)
                     /gene="dnaJ"
                     /locus_tag="SF010_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG8229016.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            42428..43099
                     /locus_tag="SF010_000042"
     CDS             42428..43099
                     /locus_tag="SF010_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8229017.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            43096..44331
                     /locus_tag="SF010_000043"
     CDS             43096..44331
                     /locus_tag="SF010_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8229018.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            44331..44903
                     /gene="recR"
                     /locus_tag="SF010_000044"
     CDS             44331..44903
                     /gene="recR"
                     /locus_tag="SF010_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG8229019.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(44900..45436)
                     /locus_tag="SF010_000045"
     CDS             complement(44900..45436)
                     /locus_tag="SF010_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG8229020.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(45433..46125)
                     /gene="cybH"
                     /locus_tag="SF010_000046"
     CDS             complement(45433..46125)
                     /gene="cybH"
                     /locus_tag="SF010_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG8229021.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(46136..47851)
                     /locus_tag="SF010_000047"
     CDS             complement(46136..47851)
                     /locus_tag="SF010_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG8229022.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNHVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(47854..48993)
                     /locus_tag="SF010_000048"
     CDS             complement(47854..48993)
                     /locus_tag="SF010_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8229023.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(49113..50954)
                     /gene="mnmC"
                     /locus_tag="SF010_000049"
     CDS             complement(49113..50954)
                     /gene="mnmC"
                     /locus_tag="SF010_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8229024.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETIPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEKYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(50951..52930)
                     /locus_tag="SF010_000050"
     CDS             complement(50951..52930)
                     /locus_tag="SF010_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG8229025.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGSKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTGQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(52930..54021)
                     /locus_tag="SF010_000051"
     CDS             complement(52930..54021)
                     /locus_tag="SF010_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG8229026.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(54018..55223)
                     /locus_tag="SF010_000052"
     CDS             complement(54018..55223)
                     /locus_tag="SF010_000052"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG8229027.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDKIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(55235..57430)
                     /locus_tag="SF010_000053"
     CDS             complement(55235..57430)
                     /locus_tag="SF010_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG8229028.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LESAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(57414..57638)
                     /locus_tag="SF010_000054"
     CDS             complement(57414..57638)
                     /locus_tag="SF010_000054"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG8229029.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKFADIALYEIAENKITLEGLVETNR"
     gene            complement(57649..58368)
                     /locus_tag="SF010_000055"
     CDS             complement(57649..58368)
                     /locus_tag="SF010_000055"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG8229030.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(58420..59613)
                     /locus_tag="SF010_000056"
     CDS             complement(58420..59613)
                     /locus_tag="SF010_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8229031.1"
                     /translation="MRKNILIFFCFFLFVGISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQQIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(59610..60416)
                     /locus_tag="SF010_000057"
     CDS             complement(59610..60416)
                     /locus_tag="SF010_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8229032.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNLIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(60403..61068)
                     /locus_tag="SF010_000058"
     CDS             complement(60403..61068)
                     /locus_tag="SF010_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229033.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(61138..62316)
                     /gene="trmB"
                     /locus_tag="SF010_000059"
     CDS             complement(61138..62316)
                     /gene="trmB"
                     /locus_tag="SF010_000059"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG8229034.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLTKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKAQFKI
                     "
     gene            complement(62316..63551)
                     /locus_tag="SF010_000060"
     CDS             complement(62316..63551)
                     /locus_tag="SF010_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG8229035.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKNLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDSKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDARAVEYEIRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(63496..64464)
                     /locus_tag="SF010_000061"
     CDS             complement(63496..64464)
                     /locus_tag="SF010_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8229036.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKFCDEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDGLYGYNGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            64542..65642
                     /locus_tag="SF010_000062"
     CDS             64542..65642
                     /locus_tag="SF010_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG8229037.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            65696..65772
                     /locus_tag="SF010_000063"
     tRNA            65696..65772
                     /locus_tag="SF010_000063"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65730..65732,aa:Ile,seq:cat)
     gene            complement(65881..65956)
                     /locus_tag="SF010_000064"
     tRNA            complement(65881..65956)
                     /locus_tag="SF010_000064"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(65921..65923),aa:Phe,seq:gaa)
     gene            66111..67454
                     /locus_tag="SF010_000065"
     CDS             66111..67454
                     /locus_tag="SF010_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG8229038.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLAMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKIVVVASIFLILSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            67465..68115
                     /locus_tag="SF010_000066"
     CDS             67465..68115
                     /locus_tag="SF010_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG8229039.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(68112..68783)
                     /locus_tag="SF010_000067"
     CDS             complement(68112..68783)
                     /locus_tag="SF010_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG8229040.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTLNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(68789..69415)
                     /gene="upp"
                     /locus_tag="SF010_000068"
     CDS             complement(68789..69415)
                     /gene="upp"
                     /locus_tag="SF010_000068"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG8229041.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEVCNFLKSQGVKKIKFISIL
                     AALQGLQKFSQTHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(69412..70647)
                     /locus_tag="SF010_000069"
     CDS             complement(69412..70647)
                     /locus_tag="SF010_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8229042.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSVEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKDVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDTIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(70649..72040)
                     /locus_tag="SF010_000070"
     CDS             complement(70649..72040)
                     /locus_tag="SF010_000070"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8229043.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            72105..72920
                     /gene="salC"
                     /locus_tag="SF010_000071"
     CDS             72105..72920
                     /gene="salC"
                     /locus_tag="SF010_000071"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG8229044.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLTQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(72957..74288)
                     /locus_tag="SF010_000072"
     CDS             complement(72957..74288)
                     /locus_tag="SF010_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG8229045.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(74290..74745)
                     /gene="accB"
                     /locus_tag="SF010_000073"
     CDS             complement(74290..74745)
                     /gene="accB"
                     /locus_tag="SF010_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG8229046.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            74893..75453
                     /locus_tag="SF010_000074"
     CDS             74893..75453
                     /locus_tag="SF010_000074"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG8229047.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            75502..76506
                     /gene="pseB"
                     /locus_tag="SF010_000075"
     CDS             75502..76506
                     /gene="pseB"
                     /locus_tag="SF010_000075"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG8229048.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            76508..77638
                     /gene="pseC"
                     /locus_tag="SF010_000076"
     CDS             76508..77638
                     /gene="pseC"
                     /locus_tag="SF010_000076"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG8229049.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNKELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLRN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            77631..77766
                     /locus_tag="SF010_000077"
                     /pseudo
     CDS             77631..77766
                     /locus_tag="SF010_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
BASE COUNT        27019 a        13117 c        11203 g        26427 t
ORIGIN      
        1 tattatcact ctaaataaaa gagtgctaaa atcaatattt ttaaggatgg acaaaaatga
       61 attttcaacc tttaggaaag cgtgttctag ttaaacgcgt agaagaaact aaaacaacag
      121 cctcaggcat aattatacca gataatgcta aagaaaagcc tttaatgggt gaagtagtag
      181 cagtaagtaa agaaatcact gatattgcaa atggtgataa aatcgtgttt gctaaatacg
      241 gtggaacaga aattaaactt gataataatg aatatttagt tttaaattta gatgatatct
      301 taggaatttt aaaataattt ataaaaaagg ataaaaaatg gcaaaagaaa ttattttttc
      361 agatgaagca agaaataaac tttatgaggg cgttaaaaaa cttaatgacg cggtaaaagt
      421 aactatgggg ccaagaggac gcaatgtttt aatccaaaaa agctttggtg ctccaagcat
      481 tactaaagat ggcgtaagtg ttgctaaaga agtagagctt aaagatagtc ttgaaaatat
      541 gggtgcttca ctcgtaagag aagtagcgag taaaacagct gatcaagcag gcgatggaac
      601 aactactgca acggttttag ctcatgcaat tttcaaagaa ggtttaagaa atatcacagc
      661 aggtgcaaat cctatcgagg taaaacgcgg tatggataaa gcttgcgaag ctatagtagc
      721 agaacttaaa aaactttctc gcgaagtaaa agataaaaaa gaaattgcac aagttgctac
      781 aatctcagcc aactctgatg aaaaaatcgg aaatttaatc gctgatgcta tggaaaaagt
      841 gggcaaagat ggtgttatca ctgttgaaga ggcaaaatca atcaatgatg aattaaatgt
      901 agttgaaggt atgcaatttg acagaggtta tttaagccct tattttatca ctaatgcaga
      961 aaaaatgaca gtagagcttt caagccctta tatcctgctt tttgataaaa aaattacaaa
     1021 tttaaaagat ttattaccgg ttttagaaca aattcaaaaa acaggcaaac cacttttaat
     1081 tatcgctgaa gatattgaag gtgaagcgct tgcaactttg gttgtaaata aacttcgcgg
     1141 tgttcttaat atttcagcag tgaaagctcc aggttttggc gatagaagaa aagctatgct
     1201 tgaagatata gcgattttaa caggtggaga agtgatttct gaagaacttg gaagaactct
     1261 tgaaagtgcg actatacaag atcttggaca agcttctagt gtaatcatcg ataaagacaa
     1321 tacaaccata gtaaatggtg caggcgaaaa agcaaatatt gatgcgagag tcaatcaaat
     1381 caaagcacaa attgctgaaa caacttcaga ttatgacaga gaaaaattac aagaaagact
     1441 tgcaaaatta agtggtggtg ttgcagttat taaagtaggt gcagcaactg aaactgaaat
     1501 gaaagagaaa aaagatcgcg ttgacgatgc tttaagcgct actaaagcag cagttgaaga
     1561 aggtatagta attggtggtg gtgcagcgct tatcaaagca aaagctaaaa tcaaacttga
     1621 tctacagggt gatgaagcaa ttggcgcagc tatcgttgaa agagctttaa gagcaccttt
     1681 aagacaaatt gctgaaaatg caggatttga tgcaggtgtg gttgtaaata gcgtagaaaa
     1741 tgctaaagat gaaaacacag gatttgatgc tgcaaaaggt gaatatgtta atatgcttga
     1801 aagtggaatt atcgatcctg ttaaagtaga aagagtagct ttactcaatg cagtttctgt
     1861 agctagtatg cttttaacca cagaagcaac aattagtgaa attaaagaag ataaacctac
     1921 tatgccagat atgagcggta tgggaggaat gggtggcatg ggcggaatga tgtaatatct
     1981 gctctaacct cttatcagca aggattttcc ttgctgatta ccaatttaat ttaaaaacac
     2041 tcccttgatt ttctacagat tcgcaaataa tcttaatatc attatcatca caaacttttt
     2101 ttaccaaaga aagccctata ccaaatcctc cttgatcggt attaaatctt gtatatctat
     2161 caaaaatatg atttaaattt gactttgaaa ttccacaacc tgtatccgca atacttaaaa
     2221 aattggcttt taaaattata gaaattactc cacctttttt attgtattta atagcattgc
     2281 ttataagatt atcaatcaat ttagaaattt gacttttagg agcaaaaata tttgcttggt
     2341 ttaaatcaag ctttagtgta attttttttt gctcaaaaaa tactttaaaa tattccaatc
     2401 tttcttcaag tagtattctt aaatcaaatt tttgtttttc tgtttctaag gtattaggga
     2461 aattataaaa aacaagatca gaatacactt gagacaaact ttttgcagca agcttaatcc
     2521 ttgtaaattt agcattatct cctaaatttt gatactcaag ttgttctata ctcatcaaaa
     2581 taacacttaa tggggtattg agttcatgag ttgaatcttt aataaaacga tttagtgtgc
     2641 tgattttatc ctccaaaggc tttagagcaa tttttactaa aatataagat attaaaccca
     2701 atatgcaaaa agccataata gcaaaaccaa aaactttcgt tctaatccaa aaaagatctt
     2761 tgccaacatc ttcaccctgt attaaaattt gcaaaccatc gttagtattt acttcttcat
     2821 tgctagcatg tcttaaaaaa taatgatctg cactcatagg agcaaggaaa aaaaccttat
     2881 tatcacaaat acctctacct ttaagctcta tctttgcctt tcttaaatca aaatctatat
     2941 tactaaaaac aatcttttta gcatcaaata tagcaaattt tagtgctgtg ctttgagcaa
     3001 tattttttgc acttatatct ataggggtaa aacgagaatt taagatgctt ataacaatgt
     3061 ttctatgatt ttctctcaaa gtggcaccct tcaaaacaac taattcttca tataattttt
     3121 gataccataa tgcaaaaaaa atagttaaaa aaatacctgt agttgttagg tagattaata
     3181 aaatttgcct aatgactttt ttagccatag caatatcccc tgcctctttg atttataatt
     3241 ttttcttttc ctaaaatttt acgtaaattt tttacataag ctcttaaact tagctcacta
     3301 ggctcctcat cataatccca gagttcttca aaaattctct ctgtgcttaa aaagttgttt
     3361 ttatttttaa gtaataaaga caaaagctta atttctttac tcggtaaagt caaggcttta
     3421 ttattatggt aaagaatttg tgtagtaaat tcaaatctaa atccatctcc taaatcttca
     3481 aaatcttcat ttttatgtga aaaagctctt ttaagcaaag ctttaaccct gatagataac
     3541 tcggcaagtt caaaaggttt ttttatataa tcatcacaac ctgcgtcaaa gccttgtttt
     3601 aaatcgtttg ttgtgtttaa agaagtcatg aaaattgctg gagtttgctt tccgcttttt
     3661 cttaattctt taagtaatga aaatccatct cctaaaggaa cttttacatc taaaatccaa
     3721 agatcaaaat atctttcata agccatatct aaagcttctc gtgcattatc gcataaaaat
     3781 acttcatatc cttcatcgtt taaaaactct tcaatgatct cactcaagct caaatcatct
     3841 tctaaaagta aaattttagc agccataatt taaatctttc taacttcaaa tctcttaaat
     3901 atatatcatt gtatcaaaat tcttatcaat tatttaataa aatttcattt ttatttaatt
     3961 tatttttatc tataatcctt tcatacaaat aaatttttcc ttaaggagtt aaaatgcttc
     4021 caaaatggga taacagctat agtgtgcaca atgctaaaat tgatgagcag cataaaaagc
     4081 tttttaaact tgctacaaaa gttgaagttg tatcagatag atctgtaagt aaaaatgaag
     4141 tcaaagaact tttggctgaa ttttttaatt atatgaaaga tcactttaat gatgaagaaa
     4201 aatacatgca gctaataggc tatccaaatt tagaagaaca tcgaaaaata cataaagaaa
     4261 tcatccaaac catgattaat ttaatcaaaa atatcaaatc aaccaatgat cttaaagaaa
     4321 aactttatat agtggctaaa aagtggcttt tagaacacat actatatgaa gacatgaaag
     4381 ttgaaaaatg gagaagttct tctttgtcta cagatgatgg tggcgatgtt agctttgaag
     4441 cagcagaaga tgaagataat gagtatccac aattttatct ttatacctgt aattgtcctg
     4501 gtaaaattca cgatgttcct tatagcattc atcaaaaaat agaattacaa ggtcataaat
     4561 ttacttgtaa aacttgtaaa caagctataa aattttacaa aaaatattct taaggaggat
     4621 aaaatgaaac gcaatgtaaa aacttattct tttagaatgc ctttagagct taaggagcgt
     4681 ttggataatt taagtaaaaa tctttctaaa ccaaaatcaa ccatagtaaa agaagctata
     4741 gaggcttatc ttaatgaagt tgaagatttt tcttttgctg ttaatgccct agaagaactt
     4801 aaagatgggg attatcaaaa ggcgagtaaa aaaatagata aaattgtcaa aaatcttaaa
     4861 caaacaaaat aaaaacttta tcacaatttt ttgtgataaa gacttattat ttttttatat
     4921 taaaatacat ttatgaatat taaaaatgga gttaaaaaag tggctccgga tgtaggattc
     4981 gaacctacga ccaatcggtt aacagccgac tactctaccg ctgagctaat ccggaatatt
     5041 taaaagtaaa atgtgattat agtgaaatta aaaaactttg tcaaggattt tttcacaaaa
     5101 atgcattttt tatgtaaaaa aattaattta ctccttaaca ataacacttt ttaaatttct
     5161 aaaataaaac aaatttaccc catcttcata taaataatca agcttcattc catgtgtttc
     5221 taaaatagta tttacaatat aaagccctaa tccaaaactt gatttttgtt ttgatccttg
     5281 agtaaaagct tgagtatagt attctaaagt attgttaagc tcaggaccac gatttttaaa
     5341 acaaatataa tcatctataa tatcaatttg cacaaaccca tcttcagaat gtttaatacc
     5401 attatctatc atatttttaa tcgccgtagt aaaaagttta aaatccacat ttacaaaaaa
     5461 actttcttcc ataaaaatac gtatattgct atcatctcgc attgcaattt ctttggcttc
     5521 atctaaaaca tctaaaatat tgtatttttt tctatttata aaagcagccc ctgaagtaat
     5581 ttgctcaata gcagcaaatt cattaattaa aatttcaagt ctagtaaaaa ccccatttaa
     5641 gcgctcttta tatttattat cttctatcat ttctaaagtt aagagccctt tagtaatagg
     5701 agttttgagt tcatgcataa tatttcttaa aaaaaactga cgagattggt ttaactttcg
     5761 aatttgaaca atggcttgat aaaaagcttc acttacttgt gaaatttcat ccaccccagt
     5821 gcttacatct tctatatcac caagctttcc ttgggcaaat ttatcaattt gttttttaag
     5881 tcttttaagt ggttttaatt ttttaaatat ataaatataa agcaatacaa gaatacaaat
     5941 cacagctaca gctatagctt tgataataaa atacctatag gtttgataat cttgatcctt
     6001 ataaagataa acctttccat cataaataat atttaaatac acctgtctat tataagaaat
     6061 aatctcgatt aagccattgt taacctcaac cctagctaaa acatcacctc taaaaagaat
     6121 tttacggatc tgctttgctt ctgttatctc atccatttta ttataatttt ttgtctgctc
     6181 ttcaaattct ttttcactga taactcctgc aaaatttaag agccttgcat tagctatcaa
     6241 agaatatttt gtgtttaatt ctctagtata attttgctga tcatattcta taagccacaa
     6301 aaagccaagt ataacactaa ccccagcaaa aataaaaata aaagttatag tataaaaaat
     6361 cgaagattta ttcattgagt aagcttataa cctattccac gtatagagtg aatatatttt
     6421 ggagtttttg gatcatctcc catcttttga cgaattctac tgataataac atctatactt
     6481 ttattactag aatcctcact aatagaagaa caattataaa caagctcttc acgacttacc
     6541 actccaccct cttttttaat caaatagctt aaaatatcaa attcagcatt agttaaagta
     6601 agctcttgtc ctttcatggt aataatatgc ttatattgat cataaacaag atcttttaca
     6661 ctttttgcta tggcgctttt tgtatttgaa atacgtctta aatgactttt aatgcgtgct
     6721 tgtaattctt ttggattata aggttttggt aggtaatcat ctgctccaag ctctaaagca
     6781 ttaaccttat ctgtaatatc atgtcttgcg cttgaaacaa taataggcgt atcatacttt
     6841 ttacgaatct cttcacacac ttcaagccca tcaagccctg gcaaagaaag gtctaaaatg
     6901 ataagctgat attcttttaa tgcgagctta gaaagaccta tataaggttc atgagctata
     6961 tcaactttca tatcaaattt ttccaaatat tcagctgtaa tttctgctaa ttctaaatca
     7021 tcttctatca taagaatatt tgtcatagtt ttcctttatt ttaaacttaa ttttaatttt
     7081 aaactaaaat ttataacgaa aggaaaatcc ttccgttatt tttatttaag cacaagcaaa
     7141 gtcgcaaaac cattgcgata tacccaaact ttggtaaatt cttttttatt aacttgtttt
     7201 aaagcttgtt ctaaatcttt taaattttta atttcacttt gtccaacacc tatgataata
     7261 tcaccctctt ggaaaccaga attttttcct ttgctctttt ctttaacact atcaaccaaa
     7321 acaccattaa catcttttgg aatttgcaaa cgatccttaa gtcttggatc taaatttctc
     7381 aaactcaaac catcaatcaa atcgctttgt acgcctttag gattttcttt ttcaccttta
     7441 agaataaaac ttgcttgctt attttctcca tctctttcgt aacttaatga aattttttga
     7501 ccaatctcta aagttcctat ataattttta agatcaatag gactttttat aaccttatca
     7561 ttaactttag taactaaatc tccacgctta agccttgctt catcagcact tgaacctttt
     7621 tgaacatcag tgattaaagc tccttcttga tttttgtaag cttttttagt atcaccttgc
     7681 aaagctaaaa tagtcacacc taaaaatcct ctatcaatct tgcctttttc aataagtttt
     7741 ttagctatat ctttaaccat atttgaaggt atggcaaaac ctatgccgtt atttccacca
     7801 ccacgagaaa gaatagctga attaatacct actaaatatc cgcgactatc caccaaagct
     7861 ccacctgaat ttcctggatt gatagaagca tctgtttgta taaaattttc atattgattt
     7921 aaacctatat tgtctttatt taaagcagat attatcccgc ttgtaacact aaaaccaact
     7981 ccaaaaggat ttccaagtgc aaaaacaaca tctccttcca ttaaatcatc agaatttgta
     8041 aaagtaatag ctgaaagatt attagcctct atttttataa cagccaaatc tgtttttgga
     8101 tctttaccta taagttttgc tttatattct atgtcgcttc ctggtaaatt cactgtaatc
     8161 gtatcagcat catctacaac gtgattattt gttactatat aaccatcttt tgaaataatc
     8221 acccctgatc ccaaagaact caccacttct ttatcatttt ttccttttct ttgaggaaaa
     8281 tcaaaatcaa aaaattgttt aaaataagga tcattaaaaa aatcatccaa agggcttgga
     8341 cgatttgctc ttgtaatagt ttttgaggtg gaaatattaa ccactgattt ttttgcatct
     8401 ttaatagaat catgataaga aagcactgca tttccagcag caggattcac acgattagcc
     8461 gttgcagtcg attcgttaaa attaatactt gcagcaaata aagcacttgc taaacttaat
     8521 gataaaaaaa tctttttcat ttcatttcct tttgttctta aagataaatt atctcgtaaa
     8581 atattttact gtcttcatag tataaaaccg aaaatttaca aaattgtaaa taaaaccttg
     8641 agtgataaaa atttataaaa cttgattgac ttaggctaaa gtttatgtta taatttaatc
     8701 ctctatataa tcaagtgaaa atttttaagg aaatataaca tgaatagttt atacgaaact
     8761 cttggagtta gcaaaaacgc tagcgcagat gaaataaaaa aagcttaccg tcgcctagct
     8821 agaaaatatc atcctgatat caacaaagaa aaaggtgctg aagaaaaatt taaagaaatt
     8881 aatgctgctt atgaaatttt aagtgacgaa aaaaaacgag ctcagtatga ccaatacggc
     8941 gattctatgt ttggtggaca aagttttcat gatttttcaa gaaatactgg tggggtaaat
     9001 ttggacgata ttttaaaaga tctctttgga ggaggttttg gtggacgctc aagagggggt
     9061 tttaacggct tttcttcaaa aggctttagc agtggttttg gaggatttgg aggttttgaa
     9121 gaagaaattt tagacagcaa tctagagctt cacattcctt tcgaaaaagc tgttaaaggc
     9181 ggggaacata gttttaattt tcaaggcgaa accattaaat ttaaaattcc acatggtata
     9241 aaagaaggcg agaaactaag aattcgctct aaaggaaaac aaagcagaaa tggagctaga
     9301 ggagatttaa tcattattgt aaaaatagaa gaaagtccta tttacacaag agaagatgat
     9361 gatttatatc aaaaggttga tatttcttta aaaactgcac tttttggtgg aaaaataaat
     9421 ataaaaacac tcaaagaagg caaggaagaa gcaacaatta acataacgcc taattcaaaa
     9481 aataaccaaa aaattcgttt aaaaggctat ggtgtgcaaa atagaaaaag tgatatttat
     9541 ggggatatgt atttgatttt aaatgttgtt ttgccaaatt tagataccct tgatgaaaaa
     9601 tttatagaac tcttaaaaga aaaattacct taaagaaagg aataaaatat ggaacagcat
     9661 tatgatgaac ctgtatattt aatcagtgtt gtggctaaag ttttaagcat acatccacaa
     9721 accttaaggc aatacgaaag agaaggattg atagagccaa gtagaaccga tggcaaaata
     9781 agactttatt ctcaaagaga tattgaccgt attaaactta tattgcgttt aacaagagac
     9841 atgggaatca atcttgctgg agtagatgtt atcttaaaat tgaaaaacca acttcacgaa
     9901 tttgaaaatt taattgatga actacgctta gaattaagca aacaacaaga taaagaagcg
     9961 gctagtaaag ccgttgttaa gcataaaaat aactttgatt tgatttttta tgagaaaaaa
    10021 taaaaataat ggataatttt ttagaaattt ttttaatcac cgttgctata gctatagttt
    10081 taaatgtcat atttaaaaaa tttgaaattc caactatcat tggatatata gctgctggag
    10141 aaatcatttc tgaaatttat catttaagtg gcaaaggcga aatcactcat atagccgaat
    10201 ttggtatagt gtttttaatg tttaccatag ggcttgaatt ttcttttaag catttaatgg
    10261 caatgaaaca agaagttttt ttaaacggct ctttacagat gcttacttgt ggctttgttt
    10321 ttatgctact tgctatagga attttaggac ttggagataa aagcgctacc atagtaggct
    10381 ttgcactagc gctttcttca accgcagtgg tgcttaaaat tttaaatgat aatggcgata
    10441 taaatgagca atatggcaga aaagcattgg gaattttgct ttttcaagat atagccgtta
    10501 ttcctttgct tttgcttgta gatatttttt catccaacaa tcaaaacata gaaaaactcc
    10561 tttttaccag tttaatttca gcacttattt taatcacttt attatttttc ataggtaaat
    10621 atctagtgga tagaattttt agactcatta tccacacttc ttctcaggaa atttttatta
    10681 gtactgtttt atttatggtt attggagcaa gttttttagc aaattatttt ggattttctt
    10741 attctttggg tgcttttata gcaggtgctt tgatagcaga aacaaaatat aaacacaaaa
    10801 tagaagcgga cttaatccca tttagagatt tgcttttagg gctttttttc ataactgtag
    10861 gcatgcaaat tcaacttgat gtagtggcac aaaattggtt tttaatcata gttttaaccc
    10921 ttcttgtaat ggctttaaaa tttggcatag tttttggctt tttatttctt tacaccaaaa
    10981 aaagagtagc gcttaaaaca gcttttgcca tagctcaaat tggcgaattc gccctagcaa
    11041 ttttttctct tttacaagca aaaaatatgc ttgatatcaa aacttcacaa attttaattg
    11101 ttgtttctat tttaaccatg attatcacgc cttttatttt aaacaatata agaaaaatta
    11161 ccaatgttgt agaagatata gcacttaata ccaacgctgt gcaaaatatt gacagcaata
    11221 tcaagctgaa aaatcatctt gttgtttttg gctatggacg cttaggacaa gaagtcgtac
    11281 aaaaaatcaa aaacacaggc gtaccttatc ttgttttaga aagtgattta aatttagtag
    11341 aacttggagt tagtcgaggt gaaaatgtcg tttttgccaa tgctgctcaa gaagaaacct
    11401 taaaaattgc caatatagaa gaatgtgccg tagctattat cacagttaca aatgaagcta
    11461 aacttgaaat tttatgtcaa gtgctagcta attatccaaa acctatagac accatcattc
    11521 atgtaaatgg aactttaaaa aagatgcttt tttctagcat agatgaaaat atacgcatca
    11581 ttcgctctga aaaagtaatc gctagaaatt tagttcaaga agcgctagaa tgccgcattc
    11641 acaaaaatac ctaaggaaga attttgacaa aaaatgaaga aaaagcctta cgcgtaaaat
    11701 acctaagaaa tcttgaaaaa tttttcaatg gcgctatatc tgcacttaaa aaagaagatt
    11761 ttgataaaac taaatttgaa gaaagaatgt taaaaaatgc taaatttttt gaaaaaaatc
    11821 ccgcggtaaa tcttaactca acctatgcaa aaaatcttga attttttgtc aatgcttgtt
    11881 tagatttttc caaagaaaaa aacgagcttt taaatcttgc caatgcttta gataagcaaa
    11941 aaaaacaagg tgagaaaaaa gaaaaacata aaaattattt aaaggattat gaatgattaa
    12001 tgtatttttt gatatggatg gaactttaat cgatagtgca aatgccattt cttgtgcagt
    12061 caatgaaata agacaggatt taaacctagc cccactttca agagaaatca ttatgcaaac
    12121 catcaatact cccaatattg actgggcaaa agaactttac aatatagaaa atttccatca
    12181 ttctagtttt aaagaaggct atgaaaaata ttttgtcaag cactatgaac aaagcgtggt
    12241 gctttttgaa ggagtaaaag aacttttaga atttttaaaa agcaaaaatt gttttttagc
    12301 tattgctact aacgccccgc aaagctcact ttcaaacata cttaaaaaac acgatatcat
    12361 tccttatttt gataaaattt taggcgtaag tttaggcata gaacccaaac ctcatcctat
    12421 gatgctagag cttttaaaaa gcgaggctcc atataaaaca agcgttttta taggagatag
    12481 tcaaaaagat aaagaatgtg ctaaaaatgc taatttgcct tattttcatg ccaaatggta
    12541 tcaaaaaaat ttaaaagaaa atgaatttag caacgctagt gaacttaaag gctttttgca
    12601 aaagtattta taagtttttt aatgaaattt tagttaaaat tagaaataaa ttttaaaaag
    12661 agtaaattat gagtgaatta ttaatagaaa ttggtacaga agaattacct gctattcctt
    12721 tgctaaaaga attagctaat atagaaaaaa aatggagcaa tgttttagaa gaataccgct
    12781 tggtaagtga ttttaaattt tattatactc cgcgtcgttt agtttttttt catgaaaatt
    12841 ttgcagacaa acaagaagat agctttgctg aatttatagg agcacctaaa aatgttgctt
    12901 ataaagatgg agttttaact cctgcgggac aaagcttcct gcaaaaagca aggatcagtg
    12961 aaaatgaact ctcttttaaa gaaatcaaag gcaaggaagt tttgtaccat caaaaagcta
    13021 ttaaaggttt gcaaagtcaa gaaattttag gagaaatggt agaaaaattt ctaaaaagtc
    13081 ttagttttgg caaaagtatg cgctggggtg caaattcttt tgaattcatc cgtgcgatcc
    13141 gttctatagc ttgcatttta aatgatgaac ttgttaattt tcaaagctat ggagtaaaaa
    13201 gtactaaaaa aactttcatt cacagaagcg taagttatga tttgcaagat tttaacaatg
    13261 caaaagaata ttttgaacta ctagaaaaaa actatatcat ccttgatcca atcaaaagaa
    13321 aggaaaaaat acttgagcaa tttaaactca tagaaagtca aaaaaatata caaattggag
    13381 aagatgaaga gcttttagct gaagtagttg ctatcacaga atatcctaat gcacttttag
    13441 gaagttttga agaagaattt ttagaaattc ctagcgaagt aatcatcact tcaatgagag
    13501 aaaatcaacg ttattttgca gtttttaacg ataaaggctt aagtaatcat tttatagtag
    13561 taagtaatgc agtatgtaag gattattcaa aaatcataca tggaaatgaa agagttttgc
    13621 gtgcaagact tagcgatgca atgttttttt atcaaaatga tttacaaaat ggcttaaaac
    13681 ctgaaaaact tgccaaaatg acctatcttg aaggtttagg cacaatgcaa gataaaagtt
    13741 taagagagat taaaattgct gaaattttat gtcaaatgct ccataatgat aaaatcgaaa
    13801 atatcagcac agcactaaaa tacgccaaag cagacttagc cacacaaatg gtttatgaat
    13861 ttactgattt gcaaggcatt atgggaagtt attatgcgca aaaaatgggc ttagattatc
    13921 aaatttgctt agccatcaaa gaacaatatc ttcctaattc cgaacaagct ccacttccaa
    13981 gtacagaatt ttcaagcata gtagcccttg caaacaagct tgataccctt ataggacttt
    14041 ttagcatagg aaaaattcca agcggaacaa aggatcctta tgccttaaga agagctgcca
    14101 atgggatcat taaaattgct ttaaatttaa ataaagaatt tgatatccaa attttattag
    14161 aaaaactttc aaatcattat aaaagctttg atatgcaaat tttaaaagat tttatttttg
    14221 aaagacttta tactttttat acagtcaatg cttcttttgt aaaagcggtt ttaagctcac
    14281 acaatacaga tcttatccat atcaatcaaa gcgtaaatgc tcttataaaa cttagcaaaa
    14341 aagataattt taatgaaaat tttgcaacct ttaaaagact agccaatatc gccactaaaa
    14401 atcctcataa agttgatgaa agtctttttg ttcaagaagc agaaagtaaa ctttacaaag
    14461 cttttcaaga aaaaactaaa gccaactctt tacaagaaaa acttgaaaat ctttttgcac
    14521 ttaagccttt tattgatgag ttttttaatc aagtgatgat taatgctgaa gatgaaaaac
    14581 ttaaaaataa tcgccaagct ttggtttatg aaatttatgc ggagttttta aaaatcgccg
    14641 atcttaaaga gttaagccta tgaaagcctt atggcttttt ttaagcctta ctctttggct
    14701 ttttggagct caaaatttag aactcatcaa aggtcaagct ttatttttgg agctagataa
    14761 gaaagatttt ttatctttaa aaaataatgg taaaaatatt cccactttta cacatcctaa
    14821 aaatcaagaa aaagttctag ctattttttc cttaccttac aaaaatcccc cgcaaaatac
    14881 aaaacttatc gcattttata aagataaaaa agaagaaatt ttcataaaaa ctttagaagg
    14941 taattataaa agtgaaaaat tgcaagttga aaacaaaaag atttttccac caaaaaccat
    15001 acaagaacgc atcactaaag aattaaaaga agccaatgcg atttatagtt cttatactcc
    15061 aaaagcttta tttaacggtg cttttaatat acctttaaat tcttttatca caagtgattt
    15121 tggcaaagca agaactttta atgaaaaagt agcaagttat catagcggaa cggactttag
    15181 agctgccaca ggaacaccta tttatgcagc caactcaggc atagtaaaaa ttgcaaaaga
    15241 tcgttatttc gcaggaaatt cagtagtcat tgatcatggt tttggaattt attcacaata
    15301 ttatcatctt tctaaaatcg atgttaaaat aggacaaaag ataaaaaaag gtgaatttat
    15361 aggacttagc ggggctacag gtagggtaag tgggccgcat ttgcattttg gaattttagc
    15421 tggaggcaaa caagttgatc ctttggattt tgtatccaaa tttaatgcta tttttcaatg
    15481 aaatttagtg actttttcca tgcttggctc catgaaagct attataaaaa tgctgtaagt
    15541 ataggaaaaa acggagattt ttttactgct gtaagcgtag gaaatctttt tggcacactt
    15601 ttagccaagc attttttaaa tttaatagat aaaaaaattt tacaactccc tttagaactt
    15661 gtagaaatag gcgctaatga aggatattta agtcgtgatt ttttagccgc tttgcttgaa
    15721 ttaagacctg aaattttttc tcaaatttct tttttcgtca tagaaccgca tgaaaaatta
    15781 agaactttac aaaaaaagac tttagaagga gtggaattta ctcacaaaaa tagtcttaaa
    15841 gaatgccatt ttaagaacgc ttttttcttt tgcaatgaac tttttgatag ttttgcttgc
    15901 gaacttatag atcatgataa aatggcattt gtagaaaatt ttaaacttat ttttaaaaat
    15961 atggatgaaa atttaatcac aaaatgcaaa gctttaaatc ttaaaaaagg tgaactcagt
    16021 ttagagcttg aaaatttttt taaagattta aaccaaactt gtgagagatt tatatttgcg
    16081 ggatttgact atggaacttt aaatccacaa agttttagct taagaatcta tcaaaagcac
    16141 gaagttttta gcccttttaa agtatcttta aaaaattttt tctgcaaaag cgatctaact
    16201 tataatgtca attttactca tcttcaaaaa ctcatcaaag aatatgattt taaaccttta
    16261 gcttttaaaa aacaaagtct tgctttaatg gattttggtt ttgaagattt attagaatac
    16321 acaaaaaata aaaacattaa aacttacgaa agttttttat ctcaagctaa aattttattt
    16381 tttaattttg atgaaaaatt tcattttttc gaatttcaaa aaaactaaaa ttttatattt
    16441 ttcatactcg ctaaacaaac cccctccctt aaaccctcat caatgactag aagtttatgt
    16501 ttatcaaaca aagcataaaa cagcaaacaa cctgcactca aataattttt tctcatcgcg
    16561 cctacttctt ttatagcctt tttttcttcc atatgaaaaa gtttaatagc ataatttaaa
    16621 aaatccttat ggtaaagttt tttaccattt actttagttg cttcatactt ttcatagctt
    16681 atattttgtt ttaatgcgct aagtgtggta ggaactccgg aatttaaaac caccgtttta
    16741 gcccctaaag aacgaagttc ctttttaatc atagccacct catcaaaagc cctaaaagct
    16801 agatgcttta aatagggatt tgcaattaaa aaatgaattt taagtttttt atctttaata
    16861 tttatgataa atttaggata tttttttatt aattttttat aagaaataca agatttataa
    16921 taagaatggt aatttttttc ataaaaacta ataataccaa aatcaaaact tttaaaactt
    16981 tttccaaaag aaagctcaca agaagcccct cctaaatcac aatacgcaaa ctctccccaa
    17041 attttaagcc ttcttaaacc tgattgcata cctaaaacac tgatcttagc ttcacttttg
    17101 gcatctataa gcttaaaatc aatcccaaat tcttttttta aatgggcaaa aatttcattt
    17161 gtattgcttg cctttctaaa agctgcagtc gctacagctc tcgctttgct taaatcttgc
    17221 tctttagcta aaatactcaa agtatttttt aatctttgta tggcttcttt agaaatttct
    17281 ccactttgat ttagattttt cgctgcccca ataacaaatt catattcttt taatttattt
    17341 aatttttcat ccatttgtac tgctcttaaa gtatttgaac caagatctat acctaacatg
    17401 actttcctta tttgatttta tagtataata gcaaaaaagt tctaaaggaa aaatatgctt
    17461 ttaggtgtaa atatcgatca tattgcagtg ttaagacaag ctagaatggt aaatgatcct
    17521 gatcttttag aagctgcttt tatagtagct agacacggag atcaaatcac tttgcatgta
    17581 agagaagatc gccgtcatgc tcaggatttt gacttggaaa atattataaa attttgcaaa
    17641 agccctatca atttagaatg tgctttaaat gatgaaattt taaatttagc tcttaaactc
    17701 aaacctcacc gcgttacttt agtgcctgaa aaaagagaag agcttactac agaagggggg
    17761 ctttgtttaa atcatgctaa attaagacaa agcatagaaa aacttcaaaa tgcaaacatt
    17821 gaagtttcac tttttattaa tcctagttta gaagatatag aaaaatcaaa aattttaaaa
    17881 gcccaattca tagagcttca tacaggacat tatgcgaatt tgcacaacgc actttttagt
    17941 aatatctctc atactgcttt tggcttaaaa gaactcaatc aagataaaaa aaccttgcaa
    18001 gctcaatttg aaaaagaatt acaaaattta gaactctgtg ccaaaaaagg cctagaactt
    18061 ggcttaaaag tagccgcggg acatggttta aattacaaaa atgtaaaacc cgtagtaaaa
    18121 attaaagaaa tttgcgagct aaatatagga caaagcattg tagcaagatc tgtatttaca
    18181 ggacttcaaa acgctatttt ggaaatgaaa gaacttatta aaagatgaaa aaactagcca
    18241 ttagtatagg cgatataaac ggcataggac ttgaaatttt agtgcgttct catgaagaac
    18301 taagcaaaat ctgcacacct ttttatttta tccacgaaag cttgcttgat aaagcttcaa
    18361 aacttttaaa tttaaaactt tttaatgcaa aaatcgtagc ttttaaagat ggaaaagact
    18421 atgagtttaa ttttgtaaaa aaagaaaatt ctcttgaaat ttactctttc taccttcctt
    18481 taggctttaa agtggatgaa aattttgaaa tcaaagccgg agaaatagat acaaaaagtg
    18541 gactttatgg ttttttaagt tttaaggcgg caagttattt tgtctatgaa aaacacgccc
    18601 atgccttgct tactctacct atacacaaaa aagcttggga agatgcagga cttaaataca
    18661 aaggacacac cgatgcttta agggattttt ttaaaaaaaa tgccattatg atgttaggtt
    18721 gcaaagaact ttttgtaggg ctttttagcg aacatatacc tttagctaag gtgagtaaaa
    18781 aaatcacttt taaaaattta agtatctttt taaaagattt ttacaaagaa acacatttta
    18841 aaaaaatggg gcttttaggt tttaatcctc acgctggaga ttatggagtt ataggtggag
    18901 aagaagaaaa gatcatggaa aaagctatag cctttgttaa tgccttttta cactctaaaa
    18961 aagatgaaaa atttttcaaa aaagccttaa aagatgaaaa tttacaaaaa gaattgcttt
    19021 taaattttaa aggcaggggc gtttatctac cctatccttt agtggctgat acagctttta
    19081 ctaagactgg tttaaaaaac tgcaatcgtt tagtggctat gtatcacgat cttgcccttg
    19141 ctcctttaaa ggccttgtat tttgataaaa gcatcaatgt aagtttaaat ttacctatca
    19201 tacgcgttag cgttgatcat ggcacggcct ttgataaggc ctataaaaat gctaaaatca
    19261 acactaaaag ttattttgaa gcggctaaat ttgcaatcaa tttacattct aaagcttaaa
    19321 tttagcccta gaatcaatca aatcttcttt agctaagctg tctataaaat cttgcaaatc
    19381 tttattggta tttaaacttt gagtgagtaa attttcatat ttatcaactt tatttttaaa
    19441 aatttgctct aaaacttctt tagtctttgt atcttttttt gctctttgca taagttctaa
    19501 taaaacctta atataagctt cttgcatgca atcacttgca ttgagtaaag ataaaatagg
    19561 attttcccct gcttttgtat tttgcatatt ttttatacaa atttttcttt ctttaagcat
    19621 cttttttgaa atggctttaa aatctttttt catcttttta tctgcttttt ttgaaatatt
    19681 ttgatataaa ctactataga tgttatctac taaagcaagt tttttattat caaattcatt
    19741 acgcacacca attttattgc atatcataag ttcatcatca cttttgccat catatttgat
    19801 tttagagcaa tcaaaactag gttttacttc atctttataa ataagctcat caaaactcaa
    19861 agcccctaaa ctcgccaaac ttaaaccaag caataaaata atttttttca ttatttacct
    19921 ttaaaatttt tattttattt taacaaaaat attttgaatt ttttaaggaa attaagcctt
    19981 tattttatta taatgcgttt ttatttttta taaggaactt aaaatgcaaa attacaaaaa
    20041 agctcttttt gcactagctc ttagtgcttt ttgtatgggc gtaactgaat ttgttatggc
    20101 aggagttttg gttgatgttg aagcgtattt tagcgtagat gcaaaaaccg cgggctatct
    20161 tacaacctta tatgctatag gtgttgttat aggtgctcct cttatcacca tacctttaag
    20221 tcgttttcat agacatacac aacttttaat caatcttgga atttttgctt tagcaaattt
    20281 catcatcttt tttagccaaa atttctatct tactgctttt gcacgcttta tagcaggaac
    20341 acaacatggg gtattttttg tcattgccac cttagctgta agtgctataa ctccagatga
    20401 taaaaaatca agtgctctag ctataatggt cacagggctt actgtagcct tagttactgg
    20461 agtgccgctt ggaactttta tagggcatta ttttggcttt aaatttatct ttttactcat
    20521 ttttatcatt acaagtctag cattttttgg agtatggcat atgatgccca aaaatttaca
    20581 tcctagccca accagtctta aaaatctaat ccctgctttt tctcatcaaa atttgttaaa
    20641 aacttatact ataaccattt gtagttgtgg ggctcaattt gttctttata cttatttgca
    20701 aaaaatactt gtagaaataa gcggttttaa agtccaagat acagcttata tcttgctttt
    20761 atatggaatt tgtgcaattt gtgggaattt atggggcgga aaaatagtag ataaaaaagg
    20821 tgctattttt tctttgcgtc ttattttaag catacaagtt ctagtatttt taagtgtatt
    20881 tctcaccatg cattctaaaa ttttaatcat ttttagcgta gctttgatag gattttttgc
    20941 cttttcaacc atacctgcac taaaaatgct tagcattact aaagctaaac gccatactta
    21001 taaagtcata gacagtacag taagtgtgaa tgaagcagct tttaatgtag gcatagcttt
    21061 agcaagtttt ttaggtggga ttgttttagc aagattgggt atagaattta atgctttatt
    21121 ttcagcactt tttgtaagcc ctgctttgat ttttgccttg ctttttgcca aagataaatt
    21181 aaattataaa aaatttcaaa gaaaaagttt tacaaaggta taaattggaa tagaaattgc
    21241 ttgcttattt aatgtaaagt taaataaagg aggagaaaat ggtagtagat aatactcaaa
    21301 aaacatcaaa tgctatcttt agcaccacaa ctaaagttaa agaaaaaaat acttcggcag
    21361 atgaatttca agccacatta aatgaagtaa aaaacaaaga agaaaaggaa gataaaaaaa
    21421 caaactcaag caaatttact aacgaagaca ttgatcttgg tgctgttaga gaagatttta
    21481 gatcttatgc ttggcaaaaa atgagagaag atcaatacaa aaaaaatgag gagactttgc
    21541 taaataagct ttttactaca attgacgcag gaaatgccac aaacaataca aaggcttaat
    21601 atacaaatca atcaaaactc aaactacata aacgagaatt ccaataattc tcgtaaaatt
    21661 tctaataact ctggataaaa tgaaaaaatt tattatttcc tctatatgaa gaaaatatag
    21721 aaaaattgac caatttaatt tatcaaattc tgttataatt ttgctaaaaa caaaggaaaa
    21781 taatgatttt tatcgatgct tgctttaaaa aacctacacc ctacacccct atttggatga
    21841 tgcgtcaagc aggaaggtat ttgccagaat atatggaagt aagaaaacaa gcgggtgatt
    21901 ttctctcttt atgcaaagac tataaaaaag cttctgaagt ttctttacag cctattgata
    21961 ttttagatgt agatgcagca atcatttttt cagatatctt agttgttcct cttgaaatgg
    22021 gtatgaattt acgttttgaa aaaggagaag ggcctgtttt tgataatcct atttcaaccc
    22081 tagaagattt agaaaaactt gacgatcaaa atgcacataa aaaattaaat tatgtctatg
    22141 atgccttaaa gcttacaaga gaaaaattat ctcaaaacaa ggctttaata ggattttgcg
    22201 gaagcccttg gactatagct acctatatga tagaaggaag tggaagtaaa aattatgcaa
    22261 agtgtaaaaa aatgctttat caaaacccag aacttttaca taaaattcta aacaaactaa
    22321 ctcaagtttt aaaactttat ttagaagagc aaattaaagc aggtgctaat gctatacaaa
    22381 tttttgatag ctgggcaagt gctttagaat atgataagtt ttttgaattc tcttttaatt
    22441 atatgcttga aatttcaaat tttattaaaa gcaaataccc aaatatacct gtaattttat
    22501 tccctaaagg cattagcggt tatttggata gaatcgatgg taattttgat gtttttggag
    22561 ttgattggag cactccgctt gatttagcac gtgataaact atcgcacaaa tacactcttc
    22621 aaggcaacat ggaaccttgt agactttatg ataaaaatgc catcaaagaa ggagtcggaa
    22681 aaatactaaa aaccatgcaa aataaagctc atattttcaa cttaggacat gggatcttgc
    22741 ctgatattcc tgttgaaaat gcaaaatatt ttatcaagct tgtacaagaa agttcagcta
    22801 aatgaaaata ctctttggtc ctgttagctc aaggcgtttt ggaagatctt tgggtataga
    22861 tttaagccct agtaaaaaac aatgcaattt tgattgtgtt tattgcgagc ttgatccaaa
    22921 aaaagcccaa gaaaaacagg atgaaattat cagcatagat aaaattatct ccgaagttaa
    22981 agttatgctt gaaaaaaatg ttgaatttga ttttcttacc cttactgcca acggagagcc
    23041 tagtctttat ccttatttaa atgagcttat tttatcttta cgcagcattg ctaaagataa
    23101 aaaattgctt attttaagca atggtacagc tgtattagat gaagacaaat ttaatgcttt
    23161 gctaaaacta gatgtggtca aatttagcct ggatagtgca gttgctaaaa ctttttatcg
    23221 tattgataga gctttaaaaa acattgactt agaaaaaatg atagaaaaaa tggcagattt
    23281 tagagctagg tttaatggag atttgattat ggaaattcta gttgttaaag atcttaatga
    23341 caacgaagaa gaatttgaag cacttaatca agctttaaaa aaaatcatgc ctttaagagt
    23401 tgatctaagc accatagata gacctcctgc ttatgctgtt aaaaaagtaa gcgaagaaaa
    23461 acttttagaa ctttctaaac ttatagattc tactcccgta ctcttagcca aaagacatta
    23521 tgaaggtgaa aaactaagct tcaatgaaga agaattatta aaaatgcttc atttgcgctc
    23581 acaaagcgaa atagacattg aagtgaaatt tgatgaacaa tccaaaactc tcttaaatca
    23641 acttatcaaa gaaaaaaagg taaaaattct cgatttagct ggagttaaat tttataaagt
    23701 ttaggccttt ggcaaatact ttctaagtaa agttataaga tcatttctac ttacatcact
    23761 taaaacttcg ctcacacaat caaaatccct aactttttcc tttgaaaaaa agatgatatg
    23821 gctttgtgga tgctgttttt tataagcact tagcaaattt ctcatttgct caagatcaaa
    23881 tttaattaat tcataatcaa gtaaaatcaa acgataagtc tccttgctta attcttgttt
    23941 taattgacta aaagaattta tacatatatt tttatcacat tgtttttcta ttatattaaa
    24001 aaacaaggtt gcatcaaaat cattttgttt aaaaagcaat acattatttt gataaggggt
    24061 tttaaatttt aaagtgcaaa ccttatcaag cttgttttgc aaaatatttt caagatcttt
    24121 tttttcaaaa ggtaaagtta aaaaatactc ataatgtgta tttttatgcc gacccatcac
    24181 tataaaatca taatttttct ttacattttt attgaaaatt ttatccttga taaaaatcaa
    24241 atgaaagtca ttaacatcaa aacttaaatt tttaaaacaa gtgctttcta tgccaaaata
    24301 cgaaagtaaa tttgcaagta aaaaattctc aagctcatca ttattaacta tggccacact
    24361 tgcttcaaat tgcaaaacct ttccatgaga tgttcctata atgcttttat gatgctctaa
    24421 agcctcattt aattctaatc taatttgatc tttttgagaa tttaaggcat ttaaaatcaa
    24481 agaattaatt tctttattat acccttcatt taagcaacgc attgcattag atatatttac
    24541 aagctgatat aaattttcct ccaataaatg caaatatcta tctttttcat gggatatttt
    24601 agttaaattt tggctcgtag tttcaaattt ttcctttaac aaatcaagcg cactatcaac
    24661 atcaatcttt ttttgaaaat ttaaaaaatc attttgcatg caaaaaattt tttgatatat
    24721 tttgtttata tttctatttt gcctaaaagc aaaaataaaa agtgttaaag ataaaacaaa
    24781 aatgctagaa aacataccta ttttcagttg ttcagtaaca ctatcaagct ttgagatatc
    24841 aatacttaaa tacgctaaaa ttagattaaa aataaaaatt atccctgcta atatcaaatc
    24901 aattttcctt tatcttttgc gccgctttcc tgcctacaag cattgtaaga tctttaaaat
    24961 cagccttata tatagattca aaatttccat aatacgctaa aagtttttgt ataacccctg
    25021 aactaagtcc taaatttgca agcttagaac ttttcaagtc ctgttttttc ttagtatttt
    25081 gatgaaagct gatagcaaaa cggtgtgctt catctcttaa tttctgtaag aattgtagtt
    25141 ttttatcgtt aatgcttaga ctaaattctc cttttaagga atgaatttta tccttagcac
    25201 cccctttagc tctatgtgct tttgcatcga ttttttcttt tgaaatagct aaaatatcga
    25261 catttgcccc actacttaca atgatttctt tagccaaatc aagcaaagcc tttcccccat
    25321 ctataagcca taaatcagga ggaggtattt tatcaaagtc caaagcccta cgcgttaaaa
    25381 cttcacgcat ttgatcatag tcatttttat gttttaaatg aaattttcta tattttgact
    25441 tatcccaaga atttattcta taagttacca tagctccaac atttgccacg ccttgcaaat
    25501 gagaattgtc aaaaatttct atatcatttg gtaaattttc aagctcaaaa taaaacttta
    25561 attctttttg tatagtaaaa tcatgatttt tttgctcttt ttctatattt aaaagggcat
    25621 tttgaaaagc caaatcacaa attcttcttt tttctcctat tttagggatt ttaatactga
    25681 tttttttatc aaacctttgg cttaaaattt cttctaaaag cactctatct tcaaattctt
    25741 cataaacata aataacattt gcaagcaaag gaatatccat gctaaaattt tctaaaatca
    25801 gttgcttata aatttcattt tgatcccatt gtatatcatt tcttatagga gtaatcttag
    25861 aatttgcact gataattttt ccattttgca ccacaaaacg caaggttgaa agcacggaat
    25921 ttttaaaagc taaagcaaat acttcaaaat cttctaattt cgcaatatct atttcaacct
    25981 taacttccaa atctttaatc attgcaatct gatctcttac tttagctgct tcttcgtaat
    26041 tttcattttg tgctaaaaca agcatttgtt tttctaagtt tttaagcaaa acactaggat
    26101 ttaaaagtgc gtgtatagcc tcatctaaaa tttcaaggta tttttccctg ctgatgagtt
    26161 tatcacaagg tgcaagacaa cgagaaattt gataaaaaat acaaggggat ttacaacttg
    26221 ctttttgctt taaaggatag tataaataaa gcgcatctaa aagctctcta gcgcctttaa
    26281 aaaaagggcc aaaatattta attttgcttt tttttactaa ttttctagtg atctcaaagc
    26341 gtggaaattc ttcttcaaaa tccacataaa tataaggata agttttatca tctcttagca
    26401 aaatattata ttttggatgc agttgtttga taaaagaatt ttctaaaatc aaagcatcag
    26461 cctctgaatt agtagcaata aattccaaat gcactgtttc ttcaatcatt ttttgaattc
    26521 ttaaagaatt tcttggattt gcatgtaaat ttggagtaaa ggcaaaataa gatttgacac
    26581 gatttttaag atttttagcc ttgcctacat ataaaagctt tccttcttga ttaaaatatt
    26641 gatacactcc agcactattg ggaagagttt ttaactcatt ttctaaattc tctttaatca
    26701 agattagaac ctttttttat aagctctctt aaatcttcaa atttcttaaa taatttttta
    26761 tcttcaaagc aatttttaaa ttcaccctta gaaagctcca aataagaatt tttagagagt
    26821 ttttcatcat ttttgttttt atttgccgca taagtgtatt tttgagaaaa gatttttata
    26881 tcttttatat caacaaatcc acttaaagga tatttctgtc catatgcttt tatgagaaat
    26941 ttaatataaa ttttgctatc atcatgattt aattcttgat aagctgctgg atgtaaggtt
    27001 attatattta aaatatgatt ttttacataa attttagcaa tcaaacgttg cttagcaagc
    27061 ggaaaagaac ttaaaaaatc tttgcaaaaa aataaggttt ttaaaggctt ataatgaggt
    27121 ttatccatca attcattaat aacagcacta gcgtttttag tcatcttaat attatttctt
    27181 tttcccataa gatgatttta gcatttcttt tcttaatttt cttctgtgct tgcggatata
    27241 aaggcaaccc tcaatacaca agctatgaac aaaatggttc ggtaaaaacc attaaaaaat
    27301 acgaacaatt acataggtgg taaataatga aaaaagcaga tattttagtt ttagactttg
    27361 gctctcaata cactcagctt atagcaagac gcttaaggga acaaggagtt tatgcagaaa
    27421 ttttaccttt taatgtaagc ttggctgata ttaaggcgaa agaaccaaaa ggtattattt
    27481 taagcggagg tccagcaagc gtatatgcaa ctgatgcgta tttttgcgat aaaggcatat
    27541 ttgacttaaa tctacctatt cttggaattt gttatggtat gcaactcatg gcacatcatt
    27601 acaaagctac agtagcacct gcaggacata aagaatacgg caaagcaaac atagaagtta
    27661 aaaaagatag cgctttattt aaaaatcttc caaaaaaaca aaccgtttgg atgagtcatt
    27721 ctgataaagt agaaaattta cctcaaggtt ttgaagtttt agccacaagt gaaaatagcc
    27781 ctttttgtgt ttttggaaat gaggataaaa aattctttgc tctacaattt cacccagaag
    27841 tacaacacag cgaatttggc aaaaatatct taaaaaattt tgctaaatac gcttgcaatt
    27901 gtgaaagtgt ttggaatatg ggttcttttg caaaaactca agcagaaaaa atccgcgaag
    27961 aagtaggcaa tgataaagtg ctttgtgctg taagtggcgg agtagatagt agcgtagttg
    28021 ctgcactttt agctagcgct ataaaagagc aagttatagt agtttttgta gataatggac
    28081 ttttaagaag tgaagaaaaa gaacaagttg aatttatgtt taaaaacact ttaggcatcg
    28141 atctcatcag cattgatgca agtgaaattt tcttaagtcg cttagctaat gtcacagatc
    28201 ctgaacaaaa aagaaaaatc ataggaaata cctttataga agtttttgaa gaagaagcaa
    28261 aaaaacataa agatgtaaaa tatctcgctc aaggcacact ttatactgat atcatagaaa
    28321 gttctgttgt aggtgcaagc aaaaccatta aaagccatca taatgtaggg ggcttacctg
    28381 aaaaaatgaa tcttaaactc atagagcctt taaaagaaat ttttaaagat gaagtgcgtg
    28441 ccttaggact tgagcttgga cttagtaaag aagtagttta tcgtcatcct ttccctggac
    28501 caggtcttgc tatacgtatt atgggagaag taaatcgccc tggcttagaa ctattgcgca
    28561 aggctgatgt aattttactt gaagaactta aaagtacagg ttggtatgat aaaacttggc
    28621 aagcattttg cgtactttta aatgttaaaa gcgttggagt tatgggggat aatcgcactt
    28681 atgataatgc agtttgcata cgcgttgtag atgcaagcga tggcatgaca gctactttct
    28741 cgcatttacc ttacgaagtt ttagaaaaca taagtcgccg tatcatcaat gaagtagaag
    28801 gtataaaccg cgttgtttat gatatctcaa gcaaaccacc tgcaaccata gaatgggaat
    28861 gatccatttt ttctagcact tatttttatt ataaaatttt tataaaaata aggctagaat
    28921 ttattcaaga aatttcaagg aagaaatatg catggaaaaa tagctattta tatggattct
    28981 acaggacgtg gaaccgttac aaactcagca aatacctttt ttgacttcaa tcgccaaatt
    29041 tggaatgata aaaaaagtat gccaagtgtt ggtatgcttg tggaatttag aactctttct
    29101 agcgaaaaaa aagcagaaga cggcaagccc gttcaaacaa gcaaaaccat aacaggtata
    29161 aaaccttcaa aatttcaaga atttaaagaa ggggatttta tcactgagca tgatttttgg
    29221 aaaactgaca atgatgatga attagaagac ttgcaaaact caagaagaag tgcttatata
    29281 acagaacttt atagaacaac agactttgac actatagaaa aaattcctct ttcttttact
    29341 atacctcaag ctatacaaaa atattttgcc catgaaattt tatccgtaga aacgcttcaa
    29401 gccaatctac aagatgaaaa ggaaattcct tgtatacttg attatcttat acttaaaaga
    29461 tttttattta aagcttatga tactttaatt tttatggata atagcataga ccaaacccaa
    29521 tttagcgcat taaaaagcat catgatgcat ttagagaatt cgtataagca aatgatggct
    29581 gatcaaaaac caaatatcac taaaattttt aacgaaactt ttttatcttt gcagtgtcat
    29641 taccaagctt tagtagccac catagataca agaaaaaatc gtctagcctc acttgaagca
    29701 caaatgaaaa ctttacaatc tgaaataaat cttaaaagca atgcgaccga tgcagaccct
    29761 gaaaaactta aagcacgaca agaaatattg gctaaactac aaaaagaagc agaatactac
    29821 agaacaacac taaaaagact tgatgctata agggaagatt tttataagaa aaattacaat
    29881 attttcgaaa atgcttttaa actttcacga gaaaagctct ttaaaaaaat tgtcacaggt
    29941 ttaaatctat gcgcaaccat aatggatgtt aaaatttggc acttgtcttt aaaatcatca
    30001 ggggttaaaa attcttattt tactatgagt aatatagaaa attctttctg ttctctttct
    30061 tttgcagaac attacttaag tcgcttaaat aaatccgctc taaatccttt tgatcaaaaa
    30121 cttttagtgt atattcaaaa aatcacaaaa gaacaaagaa aaaaattttt agttgtcaca
    30181 tcggatttag atttattatg caaattaaaa attgaaaact tttcacaaaa tccgtattat
    30241 ttagtaaaat acgcacctaa aaaagtgaat tatcagtctt taatgcgtga taacaccttt
    30301 gatatagtct atattgatga aaaacatgtt tgggaaaatg ttgccgatat tattttacaa
    30361 ggaaagcatt ttgacaaatc aggaaaaacc aaatttaaac tgatttaaga catagaaatt
    30421 taagctaaat taagttataa tttccttgcc taaacagttt gtggtattta aagtgatcca
    30481 acacattttt attaactgcg attgtgtgat ttaccgtgtt ctgtggcatc gtttgagctt
    30541 tgaaaaaagt gagaagttgc agcctttaaa aattacctag cggttttctt tgactttttg
    30601 gggtcaatct ttgttaaacg gctgtttggg tttaaaagga gatataaatg aaaataatga
    30661 ttttgggtag tggtgcaaga gaatattcta ttgctttagc cttaagaaga gtagacaaaa
    30721 atttagagtt ttattttgct cctggaaatg gcgctaccga aagtcttgga acaaatttaa
    30781 acctaaaaga tccagtagtt ttagcaacct atgcaaaaga aaaaggtttt gatctttgta
    30841 tagtaggaag tgaaagtttt ttagctgaag gggttgtaga tatttttaaa caacaaggac
    30901 ttgctatttt tgggccaagt aaagctgctg caatgcttga aacctcaaaa tcttttatga
    30961 aaagctttct taaaaaatac cgtatcaaaa cagccaaatt tttaaacaca aatgacattg
    31021 aaaaagcaaa aaattttata tatagtttaa cccctcctat agtagtaaaa gccgatggac
    31081 tttgcgcagg aaaaggtgtt atcatagcta aaactcatga agaagccata gaagaaacag
    31141 ctaaaatgct gagcggagaa agctttggag atgctggaaa actcgttgta attgaagaat
    31201 ttttagatgg ttatgaatta agcatttttg cagtatgtga tggcaatgat tttgttttac
    31261 ttcctgcagc acaagatcac aaaaaattac tcgataatga tcaagggcca aatactggtg
    31321 gaatgggtgc ttacgctcct agctctttgg cgaatgaaag cttgcttaga aaagttcaaa
    31381 aagatattat tttaccaact ttagcaggta tgaaaaaaga aggagcggaa ttttgtggtg
    31441 ttttatttat aggtgctatg atcgttggaa ataaacctta cgtattagaa tttaacgttc
    31501 gctttggcga tcctgaatgt gaagttttaa tgcctttaat cgaagatcct ttagagctta
    31561 ttttagctgc tactcaaaga cgcttaagac actcaaaaat caaaatcaaa aaagaatttg
    31621 cagtaggggt tgtatgcgca agtgaaaatt atccttacaa aagttcacca aaaagtgaaa
    31681 ttaccgtaaa taacattcct gaaaactctc atatttctta tgctggagta agcctagaag
    31741 atggcaaatt aatggctgat ggtggaagag ttttagtttg cgttggcaca ggaaaaagta
    31801 tagaagaagc gcaaaaaaat gcttataaac tttgtgataa tgtaaatttc aaaggaaaac
    31861 aatacagaaa agacatcgct catcaggttc tgaaatgaaa gaaaatttac aagaccgctt
    31921 agagcgtgaa aatctaaaaa tagcaagttt tggaaaaaga gttctagctt ttttaattga
    31981 tgatatggtt atttctttga ttgtgtttat cattttttat gatcgtctaa tccaagcaaa
    32041 agatttattt gaaacaactc aaattgtagg aaatttttac cttggcttca tcttgcttca
    32101 ttttagttat caagcaattt ttacttatct ttatggagca agtttgggaa aaatattatg
    32161 caaaattatc atcttggatg aaaatcttct tgacaaaccc aatctcattc aaagttgcat
    32221 caggtctgcc gtaagacaag ttagtgctat ggcgtttatg cttggatttg cttgggcttt
    32281 aagcaatgat ttacgcaaag cttgggagga ttatctagca aggacaatag tagtcgatgt
    32341 ggcgtaaatt ttccctattg ctaggaacta gcatagcttt aaatgcagca caagttgata
    32401 tttacgctct tgatgcaaaa aaagaaggtg atattcttac tgcgaacaat gatgttatta
    32461 ttttttctga tttttatttc atcactgcca ataaagcaat ttacaatgaa aaaaccggag
    32521 atgttgagct ttttggcgat gttaacatcc taaggggaca aaacgaaaga tcacattctg
    32581 attatgctaa aatcaaccta aattccaatc aagccgattt tagtaatttt ttcttttcca
    32641 ataacaatct tgaagtatgg tttcaaagca aaacaagcca tctaaatgat aaagtctttg
    32701 aaagcaaagt ttcagcagtt tcaagctgca atgttgaaga tcctgattgg gaaattcgtt
    32761 tttcaaaagg ctggcttaac cgggaaacca attttgttca tctttacaat gcaagattat
    32821 atgttaaaaa taccccagtt ttttatctac cttattttgg atttagcgct gatactcata
    32881 gacaaagcgg gcttttaatc ccaaaaatcg ttttaaaaag tagcgaaggc ttatactatg
    32941 aacaacctat ttatatagcc actcaagaaa attgggattt agaacttgat ccacaaattc
    33001 gaacaaaccg tggttttgga ctttattcta ctttaagatt tcttgattct ccatattcaa
    33061 caggagaatt aaattttggt gcttttaggg aaaatagctc ctattttcac gatgaaaatt
    33121 tgaaaaatca aacccactat ggaatagaac taaaatactc aagagatgat ttaatcaaat
    33181 ctttactcag tgataatttt caagaaggcc tatggataga tgcaacctat ctcaacgatg
    33241 tggattattt aaatttagga agtagggatt atcgagatct taactcgctt gtaacctcca
    33301 aaatcaatta ttttttagct gatgaaaaca atttttatgg agcttatgca agatattata
    33361 tcgacacatc taaacttagc aacaatacaa ccttgcaaga atatccaagc tttcaatatc
    33421 atagattttt aaataacctt tttgatgaac gcctgcgtta ttcatttgat gcttcatttc
    33481 ataattttta ccgacctgct ggttcttatg caaatgagct aaatttagac ttgcctatct
    33541 cgtatcacaa cgcttttttt ggagactttt tacactttac ttttacagaa agattttatg
    33601 cttcttttgt aaattatagc aacgatcccg aaagaaacca tgagcattat ttcagaaaca
    33661 ctcatgattt taatctctac accgatcttt caaaagctta tgaaaatttc tttcatactt
    33721 taaatttagg ggtgaattac attttaccag gagcaaaatc aggtaaaatc acgcaagatt
    33781 atcttgaaga atacgacaaa gaaaacgaac atacaagtct ttatactgtg caatatttct
    33841 ataacaacga aggacaaaaa aaactcaaac acagaatttc acttgactat ctcaataaac
    33901 aaaatgaatt ctatgaactt gaaaatcttt taacttatta ttttaatgaa aacatcaatc
    33961 tcaacagcga agtgctttac tcttatgagc aaagtcgctt taccaatgtc atcagccaaa
    34021 tagaagtcaa tacaaattca aaatttaatt ggatgttttc tcatgcttat caaaacgatg
    34081 agtatggaaa atatagcttt attggtacaa gagcaaatta tattgccaca cctaattaca
    34141 atttatttgg tggaatttgg tttgatactc aaagagctca tgcaaacatg tgggaacttg
    34201 gctataccta ccaaagaaaa tgttggaact attctttaat gtatagagaa agaatcgatc
    34261 cacaactcac aagtggtggc atcacagcta aaaatcaaag cggagtttat tttattttca
    34321 acttctatcc tttaggagga gtaaaatacg atttctcttt agcagaaagt gaaaacaaaa
    34381 tttaaaaagg atgaaatttg ctaaatattt taaaaaattt tacgaattta ttatctggta
    34441 aaaaaggaaa aataatgcaa tacagcatag aaattaacaa aaatacagaa atatttgata
    34501 tagacaaagt cgccaaacaa gctgccggtg ctgttttaat gagacaaggc aaaagcgttg
    34561 ttctagctac agttgcaaga gaagaaaaac aagttgaaga agatttttta cctctaaccg
    34621 tccaatacat cgaaaaagct tatgccgcag gaaaaatccc tggtggttat gtcaaaagag
    34681 aaaccaagcc aagcgatgca gaaaccttaa cagcacgcat tattgataga agcttacgcc
    34741 ctctttttcc aaaaggctat gcttatccga ctcaaatcgt tgtgatggtt ctctcagctg
    34801 atcctaaagt agatttgcaa gtaatgagct taaatgccgc aagcgtggca ctttatctta
    34861 gtgatatacc tatgaaagct ccagtatgtg gtgtgcgtat aggaaagata gatggaaatt
    34921 tcatactcaa tccaaacaat gaagagcttc aaaatagtac cctagatctc tatgtagcag
    34981 gtgtaaaaga tgagcttttg atgatagaaa tgagagcctt acctgatcaa aaagaaaatg
    35041 aaatctttat cgaagctcct tatgctgatg ttttaactca aaccacttca caaaatatga
    35101 atgaacttag cgaagatgaa attttagaag ctctaaattt agctcaaaaa gctatattaa
    35161 atggttcaaa tgcttatgaa gaagccttta gcaaacacga aaaaaattct caaatcgaac
    35221 taaaaaatga gattgaatat cctgaaattt tagcttttat agaaaataat ttccaaaaac
    35281 aaatcaaaga agccatcaac caaatggcaa aaagcgaaag agcaagcgaa ctaaataaaa
    35341 tcgctaaaga aatttcaaat cttgaaatcg ctaaagagtg gagcgaagaa agtgtcttaa
    35401 ataccttagc taaagtcaaa cgcaaactta ttcgtgagca aattttaaat gaaggcaaaa
    35461 gagctgatgg tagaagttta aacgaagtgc gtcctattaa tatagaaacc aacatcttac
    35521 caaacgctca tggttcttgt cttttcactc gtggacaaac tcaagcccta gtggttgcaa
    35581 ccttaggcgg agaaaacgat gctcaaatga tagacttgct tacagaaaaa aatcctataa
    35641 gcgaacgctt tatggtaaat tataattttc caggtttttc agtaggcgaa gcaagtccta
    35701 tcaaagctcc aggaagaaga gaactaggac atggaaattt agccaaaaga gcactttatc
    35761 caagtgtgga tgaaaactat ccttatgtaa tccgcttagt cagtgaaatt ttagaaagca
    35821 atggctcaag ttctatggca acggtttgcg gcggatcttt agccttaaaa gcagcaggag
    35881 tgccaagctt aaaacttgtt gcaggagtag ccatggggct tatctttgaa gataacaagt
    35941 atgctgtttt aacagatatc atgggacttg aagatcatga tggggatatg gactttaaag
    36001 tagcaggaag caaagacggc gttactgctc ttcaaatgga tataaaacta ggtggaatcg
    36061 atcaagaaac actaaaacaa gctttatacc aagccaaaga aggaagaatt cacattctaa
    36121 atatcatgga agaagccgcc aaaaaaatca tagtcaatga agaagtttta cctaaacttg
    36181 agctttttag cgttgatcct tcaaaaatcg ttgatattat aggacaagcc ggaaaaacca
    36241 tcaaagaaat cgtagaaaaa tttggcgttt ctatagactt agatcgcgaa aaaggtgaag
    36301 taaaaatagc aggtagtcaa aatgagcaaa tcaaagccgc aaaagactac atcataaaca
    36361 tcacaagctc tcaaaaagga actaaaaaag gctctaaaga caaagatata tcaggctttg
    36421 aacttgggca agaatttcaa ggtattgtta aaaaaatcgc tccttttgga gcctttgtgg
    36481 aacttaaaaa tggtgttgat ggtttattgc atagttcaaa aagcaagcat cttaatttaa
    36541 gcgaaaacca aagcttaaaa gttaaaatca gcgaaattaa aaacggaaaa atttctgtgg
    36601 atttgtgtga gtgagcgaat ttctaactca tccttttgag cctttttttg acaaagattc
    36661 taaaatctta attttaggat cttttccttc ggtaaaatca agacaagatg gcttttatta
    36721 tcaacaccca agaaatcgtt tttggcctat actagaaaca ctttttgatg taagattaga
    36781 aaatatcaca gaacaacaag cctttttaag aaaaaaacat atcgctcttt gggatgtact
    36841 tcaaagttgc aagataaaaa attcagatga taaaactata agttatgcaa aagccaataa
    36901 tttaagcccg atcctttctc aaaccaaaat ccaagccatt tttactactg gacaaagtgc
    36961 ttataaattt tttattaaat tccaccctcg cttaaaagcc atagctctac cctcaacttc
    37021 tcctgcaaat ttaaattttt cttttgaaca gcttttacaa aactatgaaa taatcaaaaa
    37081 atttacaaaa taacaaacta agcattaccc ccccccaagt aaaacaagaa aaaagctagt
    37141 taatatctag cttttgcgtg ttatccttga attcaaattc cactctctta gctccaaaac
    37201 ctttagcaat agcttctaaa gtatccttag cacttttatg aattttactt tctaaatttt
    37261 ggataagatt taaagacaag tctttaacct catctttggc ttcttttatg agtttgtttt
    37321 tatcactttc gctaaaacta atccccgtac tattgataga atcaggcagt aaaaaaggta
    37381 aaaatttagc atttttttca tcataaaatt tcatatctat gatgctgtgt ttgtatctac
    37441 actctggcat gatgatctta taagcatcgt cccctaaagg caaaatatca aagtttttat
    37501 cccttaaatc atacaagaaa gtgatctcaa attcaaaaat caaagcaatc tgtctttcac
    37561 tcaaagacca tcctaaaaga tttttccaaa ttccattaaa agcgctatct tttttagtga
    37621 caatctcttt actaaaaact tgaaaaacac ttaattctcc tatggattta agctgcatga
    37681 tatcgctaaa actttgcgtg cttttttctt ctattttagg gcttttatac tgcctaaaaa
    37741 gcactacaaa caaaagtaca agtaaaatca tcactaaaac aaataaaatc atttccattt
    37801 taaacctttc taaatttata aaccttgatt tgaaaagata tattttttct caaacgctaa
    37861 gaaaataaaa gcattaatga taaaaatcaa acacacaaaa gtaaaaacaa attccacgct
    37921 aaaatgtgaa gccataatcc ctccgccaaa agctccacaa aaatttccca aaaattgaca
    37981 agtttgatta aaaccaaaaa tcacacttaa atttttagca ctcacacttt ttttaagcaa
    38041 ggcattcaca caaggcaaaa gccctccaag tcctacacct ataagtaaac gcacgaaaat
    38101 aagcgtataa acattactta ctacagcctg caaataaaag taaattccac aaaatatcaa
    38161 agctccaaaa ataatcttac taggccctat cttatcggcg atttttccaa gttttggtgc
    38221 gaaaaaaaga ttgctaatcc cacttgcagc cactactata cccgcccaaa gagccaaatt
    38281 tccaccttga tgaatttgct caacatagat acttaaaatc ggcatcactc caaaagtacc
    38341 aaattgtatc acaaaagtag tgataaaaag aacgataata agggttttgt tttctttcac
    38401 tttttgagta tttttcttcg cctctttttg aatttttctc tcatggatga aaaaataaat
    38461 cgtcacaaaa gaacaagcga tcaaaaaagc caccatatca aaaaccgtac taatactaaa
    38521 aaattcagcc acaaagccac caaacaaagg cccaagcaaa cttccactta tagaagccgt
    38581 agaaagagtt cctaaagcat aagccacttt ttctttaggt gctatcacag cgataaacac
    38641 aacagcagca gaagtaaaac ctgaaattat ccctgttaaa ccccgcacaa aaactacttc
    38701 taaagcacta tgagcaaagc taagccataa ggttaaaacc gacatcccaa aacttgcacg
    38761 aagaagcata tttttataac catactttgc acccaaaaaa gcccacaaag gtgaaaaaac
    38821 agccataaaa agtggagtga tcccaaaagc aagccctgag taaaacgcta tttcactcgt
    38881 atcaacatgt cctagttctt tgatataaaa aggcaaaatc ggagcgattt gactaagccc
    38941 catacttgtg gtaaaaacac caaaccaaca cacaagcaaa gttctattga aattttccat
    39001 ggatttattg tatgatattt tttataattt ttaattaaaa ctcaaggata aaaatgaaaa
    39061 aaatactctt tatatgctta ggcaatatat gccgttcgcc tatggcagaa tttatcatga
    39121 aagatcttgt caaaaaagca aatttagaaa aagaattttt tataagcagt gctggaactt
    39181 caggagaaca cgatggagaa ggtatgcact atggcaccaa aaacaaactt gctcaactta
    39241 acatagaaca caaaaacttc acaagcaaaa aactcactca aaagctttgc gatgaaagcg
    39301 attttttaat caccatggac aattctaact tcaaaaatgt tttaaaaaac ttcaccaaca
    39361 cccaaaacaa agttttaaaa atcactgatt ttagtcctag tctaaactac gatgaagtcc
    39421 ctgatccttg gtatagcggg aattttgatg aaacttataa aattttatcc ctagcttgta
    39481 aaaatttact tgttttttta tcaaaataat ttaaaacaac tatatattac ttctcgttta
    39541 ctttttaggc ttatacttct aaacgaaccg aaaaacattc ataagaaaaa ctccttaaaa
    39601 ttacacgcct agcttaaatc cctttagcta ggcttttctt tagatgtttt tatccttcgg
    39661 atttaaaatt tttactattt taagtgcttc ttaagaaaaa actccaaatt tatgtgctac
    39721 aattacaatg ttttattaat ttttgacaag gagaattctc atgaaactag ttaaacttag
    39781 tttagttgca gctcttgctg caggtgcttt ttcagcagct aacgctactc cacttgaaga
    39841 agcgatcaaa gatgttgatg tatcaggtgt attaagatac agatacgata caggtaattt
    39901 tgataaaaat ttcgttaaca actcaaattt aaacaacaac aaacaagatc acaaatatag
    39961 agcacaagtt aacttcagtg ctgctatagc tgataacttc aaagctttca ttcagtttga
    40021 ctacaacgct gttgatggtg gcactggtgt tgataacgta acaaatgccg aaaaaggact
    40081 ttttgttcgt caattatact taacttatac aaatgaagat gttgctacaa gtgtaatcgc
    40141 tggtaaacaa caattaaacc ttatctggac ggataacgct attgatggtt tagttggcac
    40201 aggtgttaaa gtagtaaata acagcatcga tggtttaact ctagctgctt ttgctgcaga
    40261 tagcttcatg gctgcagagc aaggtgcaga tttattaggg catagtacta catctacaac
    40321 acaggcaaca gctcctttta aagtggattc agtaggaaat ctttatggtg ctgctgctgt
    40381 aggttcttat gatcttgctg gcggacaatt taatccacaa ttatggttag cttactggga
    40441 tcaagtagca ttcttctatg ctgtagatgc agcttatagt acaactatct ttgatggaat
    40501 caactggaca cttgaaggtg cttacttagg aaatagcctt gatagcgaac ttgatgataa
    40561 aacacacgct aatggcaatt tatttgcttt aaaaggtagc attgaagtaa atggttggga
    40621 tgctagcctt ggtggtttat actacggtga taaagaaaaa gcttctacag ttgtaatcga
    40681 agatcaaggt aatcttggtt ctttacttgc aggtgaggaa attttctata ctactggttc
    40741 aagactaaat ggtgatactg gtagaaatat cttcggttat gtaactggtg gatatacttt
    40801 caacgaaaca gttcgcgttg gtgctgactt cgtatatggt ggaacaaaaa cagaagctgc
    40861 taatcattta ggtggtggta aaaaacttga agctgttgca agagtagatt acaaatactc
    40921 tccaaaactt aacttctcag cattctattc ttatgtgaac ctagatcaag gtgtaaacac
    40981 taatgaaagt gctgatcata gcactgtaag acttcaagct ctttacaaat tctaagaagc
    41041 tttcaagtct aacttcaagg cggagttttg ctccgccttt ttttatgcct gatttttaaa
    41101 acttaaattt atataaaaaa ttttcccaag ctaaaacgct ttaggaaaat taagacttaa
    41161 accaattagt gattttttca aaaagccctt tttgctcttg atgcatacca tctttgatgc
    41221 caaaactttc acttagtttt tctaaaagtt ctttttgttc atcgtttaaa gaagttggga
    41281 atttgataga aatttgaacg atttgatttc ccatgcgaga actatgaaca tcttttaccc
    41341 cttctttttc aagaacaaat ctttgtccat ctttagcacc ctttggtaaa tttaaggtcg
    41401 cttcaccgcg tatggtgggt acttttatac tctctcctaa gatagcctgg gtaaaaaaca
    41461 ctggaaattc tatatatata tcatcatcat ctctgataaa agtatcatct tcagcggcga
    41521 tgatcttaac atacatatcc cctctagtac cattttttaa gatattacct ttagcattga
    41581 cacgaagctt catacctgta tctacacctt ctgggatatt aagctcgaca ctatctttgc
    41641 tttcattata acccaaacct ttacaatcac tacatttttc actagctttt tctccaattc
    41701 cttgacaatc agggcaagtt tgtgcaaaag tgataaaacc ttgagaaacc ccaacctgtc
    41761 ctctaccttg acactttgga caagtttgaa gctttccatc tttagcccct gttccattac
    41821 aagttttaca agagcattta taagtaaagt ctatattttt cttacaacca aaaaccgctt
    41881 ctttaaaact taattttaaa ttaacgataa aatctgaagg gattttctca tcatttgaac
    41941 tttttctacg acgtgatgag ccaaagcctt ctccaaaaaa actagaaaat atatctccta
    42001 aatcctcaaa accaccaaaa cctgagctac tagaaccaaa tccaccgcct tttaaagcat
    42061 cttttccgta tctatcataa atagctcgct tttcatcatt gcttaaaact tcataggctt
    42121 cattaacaag cttgaattta tcttctgctt ctttatcacc ttggtttcta tcaggatgat
    42181 attttaaagc catttttcta taggcttttt ttatggtttc tttatcagca ttttgcgtga
    42241 tttcaagaat ttcataataa cttatttcca cattattcct ttaaaaaatt taaaatttta
    42301 ctagaatttt aattttaaaa attcaaaaat ataattttag caaaaataaa atcaataatt
    42361 tatcaaattt taaataaaat tatgtaaaga ttttaaagac tacataaaaa tttacaagga
    42421 cactagaatg attaatgtgt tgatgataga agatgatcct gactttgcac aattattatc
    42481 tgaatattta gcgcaattta atattaaaat cacaaatttt gaaaatccta aaagtgcttt
    42541 aaatgtgggt attcaaggct atgattgtct gattttagat ttaactttac ctggaattga
    42601 tggtcttgaa gtttgtagag aaatccgaca aaaaagcaat attcctatta tcatctcatc
    42661 ggctagaggt gacttaagcg ataaagttgt ggggcttcaa atcggtgctg atgattatct
    42721 accaaagcct tacgatccaa aagaaatgta tgcaaggatt atgagtctta ttcgtcgcac
    42781 aaaaagagtt gaacacacta ataatgaaaa tattaactct gctttcaaaa ttgatgaaag
    42841 aagacatgag atcacctatg aagataaggt tttaacactt actcctgctg aatttgaaat
    42901 tttagaatac cttatccaac aacacggata tagtgtttca agagaacagc ttgtaagtcg
    42961 ctgtaaaaat ctaaaagata aagattctaa aagccttgat gttatcatcg gtcgcttaag
    43021 ggtaaaaata ggagatagtt caaaatctcc aaaacatatt ttttctgtta gaggtatagg
    43081 atataaactg ataggatgac aaaaaattat tctattcata ccaaactgat tattttattt
    43141 gttgttactt ttttcttggt ttgtgtgctt tttatcgttc ttttaaaaat agaagggaat
    43201 acctataatg aagaagaaag tttaaaacaa gaaaatctta taaaaaattt actcatctcc
    43261 tatgaaaaca cttcaggtgt tgaaatagga gcttatcttg gaaacagcgg ttttaacgct
    43321 atacaaaatc ccaatcttgt aaaagctata agaaataatg gacaatcact ttttaaagca
    43381 ggcggagagc tttgtactct ttcttcttta aaatatcata gcaatcttta ttttgatgtt
    43441 caatgtaaag attttgatgg cttgtatgaa gaaaatacta gtgatagggt ttataatctt
    43501 ttattgatag gatttttctc tttttctttg ttggttgttt ttatgtattt ttctgtatta
    43561 aaatccttag aacctttaaa aaaattaaga agacaagttg ccgaagttgc aaatggggaa
    43621 caacctgatt ttctagacta tcaagaagat gaagtaggca agatcgcctt tgaatttcaa
    43681 aaagctttca agaaaaacca agaattaatc caatcaagac aacttttcct aagaacaatc
    43741 atgcatgagt taaaaacccc tataggaaaa gggagaatca tttctgaaat gatcaaagaa
    43801 gacagacaaa aagaaagact tatcgctata tttttacgca tggattcttt gatcaatgaa
    43861 tttgccaaaa tcgaaaattt attttcaaaa aactacaact tacactttaa acctagtcgt
    43921 tttagcgcta tacttgaaga agctaaagaa caccttatga tagatgattt taataaagtt
    43981 gtaaaagtcg atataagata tgacgcttta atcaatgttg atatggaaat tttctctgta
    44041 attttaaaaa atcttatcga taatgcctta aaatactcaa acaatggcac ttgtgagctt
    44101 ttttgttgta aagaatgttt taccattaaa aatccaggca aacctttagc agaacctata
    44161 gagcattatc ttgaagcttt tacaagagaa aaacacaatc aagtcaaagg tatgggacta
    44221 ggactttata tagtttcaga ggtatgtaaa ctgcataatt ttgatttgat ttatttttat
    44281 gatgatggaa agcattgctt taaaattttc tttggagata aagaaaaata atggtaaaag
    44341 gcctggaaaa attcaatgaa cttgttgaaa gttttgcaaa tttacctacc ataggaaaaa
    44401 aaaccgccat aaggcttgct tatcaccttt gtataaataa tcaaatcgat ggtatgaaac
    44461 tcgcacacaa tatagaaaat gctatccgct ttataaaacc ttgtgagcaa tgcggtgctt
    44521 taagcgaaaa tgagctttgc gaaatttgta gcgatgaaga aagaaataaa aacattttat
    44581 gtatagttga aagcccaaaa gatatactaa cactcgaaga gagtcaaagt tacaatgggc
    44641 tatattttgt tttagatgag ttaaatgaag aaaaacttga aaaactaaag caaatcatac
    44701 ttaagctaaa tatctctgag ctcatttttg cattgacaca tagcattaat tctgatgcaa
    44761 ctatcttttt tatagaggat aaatttaaag gcttaaacct aacttttagt aaaatcgctc
    44821 aaggaattcc aagtggtgta aatttagaaa atgtggattt aatctcttta aataaagcta
    44881 tgaattttag aacaaaaatt tagtaatttt tataagaaat atcggctaat tcttgcaaag
    44941 aaaaatccgc aatcttttca taagtaaaac cttccttgct taaaaagtca agtaaagttt
    45001 tttccatgat tttagctcct tgtataagct catctgagag cttaaaactc atcgcttcaa
    45061 tacgctttgg cacacaagct aagatatgtg ttttaggcaa atctcctgca agttccatgt
    45121 attgtaaggt ttgaagcatt tctatttcat gggcacttcc actccagcta attttattag
    45181 gcatagcatc ataaggaaag aaaaatacat ctcctatact cgcaccttgc gcttctatac
    45241 agtctaaaac gataagtcta tcgtacctag caatgatata gctaagctgc aaagccaaag
    45301 ttccaccatc aacaaaatct aaagtaaatt cagaatgagt gaatttgtag tttttttcaa
    45361 gttgtttgca aagatgaacg cctaagcctt catccgcaaa catgatatta cctattccaa
    45421 ggactaagaa tttcaatgct tttcttcttt tacaaattta tatccgctaa taatagcatc
    45481 catagcacca tctttacctt ttactgcgtt aaaaatcgcc atgtaaatat gtactggcac
    45541 aaaaatcata attacccaca tcaaaattct atgataagtt cttacatcgg ccaaaccgcc
    45601 cattgcagct tcaagcggtc ttaaaatatg atataaaagc ccacctaagc cctcatggta
    45661 agtatgagta taaagaataa gccctgtaag aatgatacct aatatcacaa gataaaagaa
    45721 aaaataagtt acaaattgca aaggattata aacccctttt aaatgcggat gttttcctaa
    45781 gaaaatgtaa aattttactt gttctatcca taatttgata ttaaaaatat cccatacact
    45841 tctgcgttct tttgcgctta ccttatcgca gaaaaacaaa tatactttaa aaataataca
    45901 agcgattaaa acaaaaccca ccgcttgatg tactaagcgg tattttgctt gcataaaatt
    45961 tacgggttca ccgttactaa tagggctttg gaacacatag gaaagataat accctgtgcc
    46021 aataagaatc actatagcaa tagctcttac ccagtgcgtt aaacgcaaac ctatgctaaa
    46081 ttcatattca gcttttcttt gcaatttttc ttctttgttt tgcatgaaag cctccttata
    46141 aattgacatt cactttatat tcacttagat tattgccctt agtatccatt acatgcaccg
    46201 cacaagcaat acaaggatca taagagtgaa tttttctaat gatttcaagt ggttgtttta
    46261 catcagcgat tttaagtcct atcaaacatt gctcataact tccgcctacg ccatttgcgt
    46321 cttttggact tgcattccaa gtagaaggca ccacagcttg ccaattttca ataacaccat
    46381 ttttaattct acaccaatgg cttaatgttc cgcgtggcac atgccccata tagcgtcctt
    46441 tgtattcttt agaattatcg atcacataag gagcacaagt actctggtct acttttaaat
    46501 tttcaactaa attattaaac gcttttaaag cattgtttgc aacgattttt gcttcaatac
    46561 aacgagcagc tgttcttcca agtgtactaa atacagcatt taaaggaagt cctgtttctt
    46621 ttaagaactc atctactaca ggaacaacat tttgattacc tttagcataa tttacaacga
    46681 tatttgctaa aggtcctact tgcatagggt ttccttcata gcgtggagct ttaatccaac
    46741 tatatttacc cttagtatca aacactttag aatgaacatg atttccatga tgatctacgc
    46801 tttccccatc tacaagtcct gtataatttg gatttgtttt gccgtcataa ggatgtaaag
    46861 gttcattgtc tgcataccaa gaatgagttg cctcttcagt aatcttatct tcttctactt
    46921 cataaacctt gcttaaatct ccatttttga taataccact ttcaaaaagc cattcatctc
    46981 ttccgatttg aaattcttta aaggtgtaaa gattatttac ccctatatca tttaaaacac
    47041 ttgcttcatg tgcataagct tttcctgcca tcacaagatc aggataatac gcacgattaa
    47101 caaagtcttg cacttcttgg aatttaacca tatattcacc cattcttgca ggatcaagta
    47161 aatccataac gcaagttaca ccaccaacgg ttaagctttg tggatgtggg tttttagctc
    47221 caaaaatcgc catacattga gcaatgattc tttgaattct taaacattct agatagtgag
    47281 aaagaacgat taaattttgc tcaggagtta aacgataagt tggatgacca tagtacgcat
    47341 tagcaaaagg tcctaaattt cctttatcta caaaagtttt aagtctttgt tgcacttcaa
    47401 gaagtttatc tgcacctgtt gcataaggat ttgaagtgta tttaaaagct tcatcgcttg
    47461 cttttttaac atcagcactt aaagcactta ccacatcagc ccaatcaagc ccatgaagtt
    47521 gataaaaatg cacaatatga tcgtgtaaaa ataaagccgc attcattaaa gttcttgtta
    47581 aaagcgcatt taaaggcgga gtaataccta aagcattttc aacagcaact atacctgctt
    47641 tataatgtga aaaagtacaa actccgcaaa ttctttgcgt cataaaaccc gcatctcttg
    47701 gatcacgccc ttttactatg gtttcaatac cacgccacaa agtagagccc gcataagctt
    47761 cttttaccac attgttatca tcaacaacaa cctcaactct taaatgccct tcaattcttg
    47821 taataggatc tacgattatt ttttgactca tttttattcc ttatcttttt gcatggaaga
    47881 tataactgcg tgtgctgcta tagcaacgcc tgtgagtgta agcacaccta taccaatttt
    47941 atctgaaaca ctatccgcac ccaaaccaaa aacagtatca aatttacgac tagccatagg
    48001 ctcttcaaaa ggtcccatag tatcccaaaa attaggctca gaacaaccta tacaaccatg
    48061 ccctgcttga ataggccaag aagtgtgctg gttaaatctc tctcttgagc agttattaaa
    48121 agtataaggt cctttacaac ctactttata aagacaaaaa ccttgttttg ctccttcatc
    48181 tccaaaagca tgtacaaatt cacccgcatc aaaatgtccg cgtctttcac aaagatcatg
    48241 aattcttaaa ccataagccc attttggtct attatacaca tcaagtgctg gtaactcacc
    48301 aaataataaa taatgaagta cattacccac tatatttttt tcacttggag gacagcctgg
    48361 aacattgatc acagttttac ttgttacttt gcttaaaggc tgcgcgttgc taggatttgg
    48421 tcttgcggct tgaattcctc caaagctaga acaggttcct atagcaaaaa tcgccaaagc
    48481 attttcactt gccatttttg aaagctcata gcctgttttt ccatgtgcac ctatggttaa
    48541 aaaatgctcc gtatcaccca tagggatacc accttcaacc attaaaatgt atttattttt
    48601 atgcttttga atggcatttt ctaaattttc ttcagcttgc caacctgctg cagccatcac
    48661 tgtttcgtga tattctaaag aaatataatc aaaaatcaaa ctatcaatcg ttggagtatc
    48721 acttcttaac aaactctcac tacagcctgt acactcagcc atatgaagcc acacaacagg
    48781 aagcctatca gcaagctcag cagcttttgc caccatagga gtaaaactcg ctggcaaagc
    48841 caaaaatgcc gtcatagcac ctgcccattt cataaaatcc cttctagaaa aacctgactt
    48901 ttctaatgct tttgtaatac tatcattgtc tttcaaagaa ggaagttttt caagagtcga
    48961 taaacgcgac tctatttgat gataatcaat cattatattt cctttgtaac atgaaattta
    49021 ttctctataa taataaaata aaggaagtta aaataaagtt aaaaacttac tatcataagc
    49081 aaatattagc atcactctta attaaagctt aatcataagc cttttttaag tttgcgaatc
    49141 aaaaatcttg caggatgaat agcgtggatg tatttttttt ctaaacacaa gggttcatta
    49201 tttatcaatg cacacaaata ccttgccgct aaaacacttg tactaaaacc ccttgaccca
    49261 tgagcaaaat taaaatacaa attacaagac attttagctg gtttttgctc cttatttttt
    49321 gtccataata aagctttata tttttcttta taaaacgctt catcataagc atttccaact
    49381 atcataaagc gatcactcga ataagatcta aaacctactt tagaacctat gatttctaat
    49441 tttgtatttt tatccataaa atcggctata ttttctatat tttgtttatc atcttcttct
    49501 tttgattcta aacttgcatt aagcctatca taacttgcac caattacttg caaatcatct
    49561 tttacagggc aaatataagc cttagaagat aaaggaaatg gggtatctaa aaaaggtttt
    49621 agatgtgtaa cttgacctct tactttgctt aatttcatct catcataaaa aacaaagtct
    49681 tttgcatctg cacccatagc ataaatcaaa accgcataat cacttttaac aacatcattt
    49741 ttaaatttta aactaaaaca cccattttca aatttataag cttgaaattc atgattaaaa
    49801 tatatacaag ctttgctttt ttcaaaaaga tttttaacca atttttttgg aaaaatcact
    49861 ccaccctctt ctaaaaaagc ttgatttttt gaaattttaa acaaaacatt ttctctttgc
    49921 gtgtcaaatc tttcttgcat taaatcatta tgtgcaaact ccaccacacc cttaaattct
    49981 aaatctaaaa tttgtctata aaaacgactt gcctctataa aagaaagctc tgaaaactcc
    50041 cctaaattta ccttaggctt taagattaaa gagcttaaaa ttccactttc atttccactt
    50101 gcacccttgc ctaattctaa atgtttttca aaaatatcta tttcaaaacc tcttaaacta
    50161 agctcataag ctaaaacagc acttgatata cctgcaccaa taatagctac ttttttattt
    50221 tttaaagatg aaaatgttct tgaaaaatac gcttctttgt ctttaaactc aagctcattt
    50281 tccaaataag ctttaatcat ttctcttttt ctaaaacctt tggttttttc tactctaaaa
    50341 ccatattttt ttaaattttt ttgcaaaaaa cttgccgaag aaaaggtgca aatttgtgta
    50401 ttttttttag aaagtcttgc cacttcaaag attaaatttt catcaaacat ttgcaagttt
    50461 ttatttggag aaaatccatc taaataccaa acatcagctt taaaatccaa ttcttttaaa
    50521 acagctatat cttcaaaaac aagatctaaa aaacaatctt caaaataaaa acgataaatt
    50581 ccttctttag ccttaggata aaattttaaa aattgttcta aaagctcttt aaactcttca
    50641 taaaattcta gtttttgata aatttctctt aattgttctt tttcgatata aaaagcttct
    50701 acgctaatat aaaaaagttt tttaggacgc ttagaaggga tagtttctaa aaagcgtttc
    50761 aaagtaagaa aaaaatttaa acctatacca aaaccactct ctgcgataat aaaattttct
    50821 tgatttttcc attcaaaaga atgagtgtaa acaaatttgc tttcatttaa gccatctttg
    50881 gaattaaaat aaaaatcatc aaaatccaaa gaaaaaggag tattatcctt aaaaattagc
    50941 ttagcttttt tcatcggttg ttataaaaat aactctcaac tccatcggca atacccttaa
    51001 ccaataaatc ttgaaaagct ttattggcga ttcttttgcc ttcatttgga tgtgtaatat
    51061 agccaatttc aatcaaaatt gcaggcattt gcgcacctac taaaacccaa aaaggtgctt
    51121 ctcttacacc gccatctaca attttatact ttttgcgtgt ttgagtgagt atattttttt
    51181 gtacatcaat ggctagttta tttgaagcaa cgattttttc acgatttaag aaatttaaaa
    51241 tactttgttt tgagaaataa ttaatctctt caaaatcccc ttgattttct ttttctgctg
    51301 cctttttact tctttcactt cttgcaggac ttaaaaagaa agtttccacg ccttcgctac
    51361 ttttggcttt tgtggcattt ggtgctgcgt tagcatgtat agaaataaac aaatccgctc
    51421 ttttatcatt ggcatatttg gttctatcac gaagattgat aaatttatcc gaacttctag
    51481 tataaagcac tttataaccg cgttttttaa gttcatttcc aagttttaaa gccgtactta
    51541 aaactatatc tttttctttt aaacttcctt ttttatcact taaagcaccg ctatcttttc
    51601 caccatgccc cgcatcgata accacaagct ttcctgattt gtaatttgta tttaaagttt
    51661 tactagaact ttgagttgct tttttgtttg cattttgatt tgtagtttgt atataaaaac
    51721 ctaaagtgag attattatta tccaactcct ttaaaagttt aaattcttta ggagcactca
    51781 aaaccacacg aacggttttt ggattgtatt gagtaactgt aatcacattt tgtccaaaag
    51841 taaagctttt tctattacct tctaacacac ccttaaaact tacaacatat cggaattttt
    51901 gatctttggt atcaaatact gctatttctt tttcatctaa atcatcgctt aaatttaaca
    51961 ccacagcatt agaaatttta tccacatcta aaacatataa aggttcttga ttttcttttt
    52021 cattattggt ttttttatct tgtttttttg tttctaaaac tttggtttta atttctgttt
    52081 tttgatcttg ctttttctct gaaattttac taacttgccc agtctttttt tggctagtag
    52141 tttcttttga aaaaattatt ttttcttctt taaaagatat atcaatagga attttttctt
    52201 tagcataaac cactatgcgt atggttttgg gattaaattg tgaaatcact aaacgatagt
    52261 catcaaattt aaactctttt ttactccctt ctaaaacccc atcaaaatca ctaataaaac
    52321 gatagtttcc tttttcgtct aaagcaaaac tttttaattg atccttatcc aaatctgcat
    52381 ttagttcaaa ctctacacct tggtttgttt tacttgactt taaaacataa attttatcat
    52441 cgctttttgc tttagaaacg atactgctct ttggtgcttg cgaagtttta gaatttgttt
    52501 tttctgtatt ttttatttgt tcgttagatg attttttttc atttttttga actgttttta
    52561 taggttcaaa agttgatttt tcagtgtctt gagaaatatt ttgaacctta atatctttaa
    52621 taacagcctt tcttaaagca ttaatacttg cttcacttat accactttct tttaactcat
    52681 tagcatatga cttgtcatct aaatttaaag tatttgaact gatgatcaat ctttttaaaa
    52741 tttcaatttt agttttttca tcttcatgaa taacactttg tatataaagg cttttgagct
    52801 gatggtgaaa ttttacttgc acttcacttt tagaaccgat aaaattttta tcaaaatttg
    52861 caagttcatt ttcataagct ccaaaaagag ttgtgaaagc aaacactaaa aatacaaaaa
    52921 ttttagccat tattcaccat taaccaattt ttccataagt tctttaacac tgataagctt
    52981 atctaaacga tatccatttg cacctgtaaa gaaaagtcct gtttcttttt tgcctgacca
    53041 cgcatcaaaa agcctatctg ctatacaata ccctacttta gtcgcctctt ttccacgtcc
    53101 acaaggcgct acacaattgc ttatacaatt aatctttgga cccattcttt tatctaccaa
    53161 atttaaaaga ttggttctaa ctccacgagc aggatagccc acaggagatt taataagctc
    53221 tatatcttct tctttagaag ctagcaaaac gcttttaaac tcttcactcg catcacattc
    53281 aaaagttcct atgaaacgcg ttcccatttg aacaccacta gcccctaaag aaatagcatt
    53341 ttctatatct tttttatccc aaattccacc tgcagcaatc acgggaaaag acccccaatt
    53401 tttagcctct tctaccacag gagcgattaa tttttctagc tgataatttg gatctaaaca
    53461 ctgctcataa gtaaaacctt gatgacctcc actttttggc ccttctaaaa ccactgcatc
    53521 aggcaagcga ttgtaacggc tttgccatct tttgcaaata atttttaaag cctttgcaga
    53581 tgaaatgata ggcactaaag ccacatcagg aaaatctgca gtaaattcag gtaaatttgt
    53641 aggaagtcca gcacctgaaa caatcacatt aaaaccaacc tcacaagcat cgcgtgctat
    53701 tcttgcataa tcattacttg cacataagat attacacccc aaaggtgcat cgccacaaac
    53761 ttttcttgca ttattaatca aagcttgcaa acccttgcgt gagtaaaaat tttcacttcc
    53821 ataaggctta gcatttaatt ctttacttgc atactttctt tcttcataat atcctgttcc
    53881 cacagaagaa ataatcccaa gtccaccatt taaagaaact gcagaagcta atctatccca
    53941 gcttatgcct agtcccattc ccccttgaaa aatgggatat tttatagtat gttttcctat
    54001 ttgtaagggt tgtaaattca ttcttttacc tttaattttg caaattttct tttacctatt
    54061 tgtaagatgt attctccttg ttctaaatac atttgctcgt cgctaacttt ttgagaattt
    54121 acacttactg cattagcact gatgcttctt cttgccgcag aagtagaact ttccaaacca
    54181 cattcaacca aagccttagc aagccaaatt tttccttgta tttcaaactc agccatatca
    54241 cttggcaaag cattttgaga atgaatttta tcaaattcag acttagcatt attagcctct
    54301 tctttggagt gaaaacgctc tgtaatctct aaagctaaat tttctttagc ttttttagga
    54361 tgtaaattgc cttgttctat atcttttttt atttgcgcaa tttcttctag acttttttga
    54421 cttaaaagtt cataatatct aaacatcaat tcatcactaa tacttaaaat tttagcatac
    54481 atatcattag ctttttctgt aacaccaatg taattattta aactcttact cattttgttt
    54541 acaccgtcta aaccttcgag taaaggcatc ataatcacag cttgttcttt tcctatgtta
    54601 taaactcttt gaagctgtct tcccatcaaa agattaaatt tttgatccgt tccacccatt
    54661 tcaatatcgc tttttaaagc cacactatca tatccttgaa gtaagggata taaaaactca
    54721 caaatcgaaa taggactttg ctctttaaat ctcttggtaa aatcgtcacg ctcaagcatt
    54781 ctagctacac taaaagttga agtaagctct actatacccg cggctccaag ttcattaagc
    54841 caagtagaat taaacttaat ctgtgttttt tctttatcca aaaccttaaa aacctgcgtt
    54901 tcataagttt tagcattgat taaaacttgc tctttatcca gctttttacg cgttgcactt
    54961 tttccacttg gatcgccaat ttgtcctgta aaatctccaa tcaaaaactg cacaatagct
    55021 ccatgttttt gcaaaaaagc catttttgtt aaaaccacgc tatggcctaa atgtaaatca
    55081 ggcgctgtag gatcaaaccc tgcctttata aagaaatttt cacccttttc ataataattt
    55141 ttaattaaat tttctattct ttcttcatca ataagctctg cacaaccacg cttaacttct
    55201 gctaatattt tttttatatc cataataaac ctttttaacc ttctttataa gcatcattta
    55261 aagatgtaaa atctaaaatt ttacaacgag attttaacct atccttgaca ctatctggat
    55321 tgatattatc aggaatttcc attgtaatct caaaataatc taccgccgaa tttaaatcac
    55381 ttgataaatt aattgttaat aaatttatct gcattttagc taaaaatgcc aaaaattccg
    55441 ctaaaacacc ttttttattt tccaaagaaa aaatcaattt ataagattta gggatgttag
    55501 aatcccattt tataaatacc atatcttgat tattatctat cattttatca gctctatcgc
    55561 aaagcttatg atggacaata gcgttaccac ctttaacaaa agctaaaaca gcatcgcctc
    55621 tttttggatg gcagcaaaaa tcaaaatcca cattagcgat tttatggtta caatatagag
    55681 taaaatttcc tattttttgt tctttaatct catatttatc aaaccaatat gacttcttgg
    55741 cgtatttttt aagaccatta actatatctt tcaaataagc actatctgtt gctacttgtc
    55801 taatacgtct ggctaaattt tctttttcta tccaagtttc aattctgttt ttatcaactc
    55861 caaaaataaa acttaacata ttaatagaac ttgctagatt aatctctctg attttttgct
    55921 tacaaaattc ccttatactt gcttttgctt ttcctgtttt aacactatct atccaagaac
    55981 agcgataaaa tttatcattg ctagtaacca ctcgcacaat atcgccattt ttaagctcgg
    56041 ttaacaaagg cactttaata cgatttacat aagcactttt tgcatgaagc cctactttgg
    56101 tatgcacttc ataagcaaaa tcaagaaccg ttgcaccacg aggcaaagtg aaaatttctc
    56161 ccttaggaga ataaactgcg acatcttcaa cataaagact atctttagca tattcataaa
    56221 gttcaatagc attataatct tctgcacttt caagattgtt tatactttgc attgaaatat
    56281 ctgtaagcca atcaagacga ggcgcaacca cactgccatc ttctttatat ttccaatgcg
    56341 ctgctatacc aaattccgca attttatgca tatcaaaagt tcgaatttgt gcttctataa
    56401 tacttttagc atcaaaaagt gtggtatgta tggtttgata accattttgt ttaggcaagg
    56461 ctatataatc cttaaaacgc gaaaccaagg gattaaaatg tgtatgtaaa attcccaaag
    56521 ctaaataaca atcacttact ttttcaacca aaattcttac cccaagcaaa tcaagaactt
    56581 cttcaatacc aatgcctttt ctttgcattt taagataaat agaatagcta tgtttaatgc
    56641 gtttttgaat ttcaaaacta ccttgtctaa agccattgct caaaaataaa agttcgattt
    56701 tggaaataaa ttcatttaaa cctaattgca tttcttgatt attggagttg atataattgt
    56761 caataagctt atactcatct ggcataagat atttaaaact aagatcttcc aaataatttt
    56821 ttatgcttga aataccaagt ctatgggcta ttggggcata tacaactaaa gtttcttcgc
    56881 tgattctttt ttgcttatct tctcttagaa tatcaagagt aagcatatta tgcagcctat
    56941 cgcataactt cacaatcaaa accccaacat cttcaatact tgctaaaagc atatttctga
    57001 aagtcaaggc tgatttagtt aaactttttt tagattttga tgaaatgaga ttatcttctc
    57061 taatttctat aattttagta agccctaaaa caagttttaa aacctcagaa ccaaactgct
    57121 ctctaagttc ttcttcagta cagtttgtat cttcgatcac atcatgcaat aaagcagcta
    57181 aaatattgct tttattttca cttaaaaatc caaccagtgt tgctactaaa ataggatgta
    57241 ccgcataagg ctctccactt tttctaaact gcccttcatg gcaaaatata cagtaatcta
    57301 ccgctttttc aagaatggca tcatggccac aaatttcgaa aagcaaagcc ttagcagctt
    57361 ctaaatcttt acaatttttt acattatcga ttaattgttc aagcaataat tcttcatcga
    57421 ttggtttcaa ctaaaccctc taaagtgatt ttattttctg caatttcata taaagctata
    57481 tctgcaaatt tatttttatt tttatcaaag tctaccaaag gggttgctcc gttcgccaat
    57541 tgttccgctc tttttgctac cactaaagaa aggcgatatc tatcattacc cattttttcc
    57601 aaagcttttg ccgctacttc ttctattctt ttatccataa ttttctcctt aattattttt
    57661 aacgattgaa caaaggctag tatcaccttg tatgatttta agtaaattac cctcttcaaa
    57721 catattacaa accacaatag gaagtttgtt atctttagct aaagctatag ctgtatcatc
    57781 catcacttta atattatctt gcatagcctc atcataactt aaagtattta aaaatactgc
    57841 atcatcaaat tgttttggat ctttatcata aactccatta acttttgtag cttttattac
    57901 catatctgca tcaatttcca cagctcttaa aatagctgtt gtatctgtag taaaataagg
    57961 gtttccagta cctgcggcaa aaaccacaac acgacccttt tctaagtgtc tttgtgctct
    58021 tctcataata taagtttcac aaaatgcttc catctgaatg gcgctttgaa ccctaacttc
    58081 aagtccagag ctttccaagg cttcttgtat agcaatagca ttgataaccg tagcaagcat
    58141 ccccatatga tctccacttg tccttttaat caatccaccc ttagcagcac ttactccgcg
    58201 aataatatta ccaccgccta taactatgcc tacttctatt tgatttttta taagttcttt
    58261 aatctctgaa gctatgaatt ttaaaataga attttctata ccaaagccat tttcacccgc
    58321 taaagcctct cctgaaaatt ttactaaaac tctttttctc tcttgcatta tttctcctta
    58381 tttaacttga aattatattt taaattccat taaatttagc taatttaagc taatgagttc
    58441 caaaggattg atatgaaaat ttttttgagt tacttcaaaa gtaagatcat tttttattct
    58501 acccactacg gcaccttttt taatattctt accaacttta atattaggag caatcttatc
    58561 taaatgtgcg tatattgtat gtatgccatt atcatgttca acaataacaa ctcgagctaa
    58621 catactagta tctttagcaa aaactatttt tccatctagc acatttttaa caactgcatc
    58681 gcttttattg cttcttaaaa ctacattctc gttaaaaatt ttaagattgt aaacaggatc
    58741 aacataattt ccaaattttt gcttcacagt aaaagaatcc aatggagcta tggttttttt
    58801 tcctgtgtaa cgcttgactg aacttccttg atagcttgaa cctaattgcc ttatttgttg
    58861 attatttttt actattttag tatcattttt gtttaaattt gcaccttctt tattattaat
    58921 aatttttaat tgatttaatg tttttctaag ctcttcttgc tgagcttgta agtcatcgag
    58981 tttttttgca tatatggttc gatctgtttt ttgtttatta atttcgctaa tttgtttttg
    59041 ttttaaactt tgaagcttga ctaattgagc attgtaatcc ttaagactat cattgatttt
    59101 cttaatctga gcttgtttat catcaataag tctgcttact ccctcataat ctttagaaat
    59161 tttaaaaatt tcttcattta aaactttgtt taaactccct aaaatttcaa aagccacaaa
    59221 actttcttca ctttcgatat agccttgagg aataggtaaa tcataggcaa aatctttagc
    59281 catcaaagat ataagcttac tttccatatt tgatttactt ttaagcaaat cttcattttg
    59341 gcttgcaagg gtgtttaact cttgattttg agccttagca cttgcttcaa gcttagaagt
    59401 ttgtgaattt aagctttcaa tttgcaaact taaatctttc aaactttttt caccatttaa
    59461 aatatcacta gccaaatctt caagtttttt atttagctgt tcttgtatgc gtttattttc
    59521 ttctaaactt tttgtttttt catttatagc gtttgctaaa cttataccaa caaacaaaaa
    59581 aaaacaaaaa aagataagaa tattttttct catcttttaa ccttaaacat aaccgtattt
    59641 acacacaaca agcaaataaa caaagtagct aaaaaaatta aagtcaaatg taaaataaaa
    59701 ttaataggtg gaaaaataat atctacagcc tttaaacttt cttggataat agaaagatca
    59761 aaaatttggg taaaaaaggc aagtaaaata acaaaagcaa taaaacaatc aaccacaacc
    59821 accttataaa gcataaaaga tctaaaccaa aacggagctc caaataaaca cataatttca
    59881 atacgatcgg tatgttcata aagccaaatt ctcatctgtt ttaaaaacaa aacaaaggca
    59941 agtaaaataa tgataaacaa aaataaccaa aaaacaaatt tcatcaaaat aagcaaagag
    60001 tatatcttat catgggtttt ggaaaaagtt tcaaccttac taacacctac aatatttaaa
    60061 agttgatttt taatcaaatt tagttcattt tgatcgggta aagaatttaa ttttaaagta
    60121 taaaattttg gcagagaatc ttttaaaact ttcaaattct tttcagaaac atcatttttc
    60181 aaacgatcaa ttaaatcctt aggatctaaa gattcaagtc cagcaaaaaa tggtactttt
    60241 gtttttacta cattctgatc aagttcagtt ttgctgacaa ctataatatt ataatcttta
    60301 ttaacaagtt cttcataatg ctttaaagtt gcatttgtaa ccaaaataaa ttcaaaagca
    60361 aacatcataa aaagcaaagg taaaattaaa gataaatgtg ttttaaaaaa tttcattcat
    60421 ttttccattt tctatattaa aacgacgata atccactctt aaattactag gaattctatg
    60481 tgttaccact ataacacaag ttcctaaaag ctctctagca gactttaaaa gagtccatat
    60541 aatatcagaa gaatactcgt ccaaatttcc cgttggctca tcgcaaagca aaagctttgg
    60601 attatgagct aaagccctag ccatagcgac gcgttgttgc tcaccaccgc taagttgatt
    60661 aggcaattta tctgctttaa aagttaaatt tacatgcttt aaaagcttag tagcttgatc
    60721 atggcatact tttttgctat aacctttaat cattaaaggc aacataacat ttttttcaac
    60781 actatattct tgtacaagtt tataatcttg aaaaataatc cctattcttt gacgcaattt
    60841 taaaagttct aaatttccaa ttttattcat caaagatcca catacttcaa gcttaccaga
    60901 aataggttct aaatctccat aaaaagactt taaaagcgta ctcttaccac tcccactttt
    60961 acccgtaata aaaacaaaat catcatcctt aaaagcaaaa cttgcttctt taataactag
    61021 ttcatcataa cctaaagtaa gtttatttgc ttggattaaa ttaggcatcc tttttcctta
    61081 atttcccttt ttaaattttt aaattatgct ttatttttgc ttaattttca agaaaaatta
    61141 tattttaaac tgagctttta aaatttcttt taattcattt atcgctttaa tattttcttg
    61201 aattttaaat ggttctttaa aagcaaaatc gatcgtttta tcaagatgca aataacaatg
    61261 ttcaggctta ttaaaagctc caaaagcaac ctttaaaagc aaattctcat cttgtttata
    61321 gatgctttca aaatgcaaga aaaaatcatc tttttttata gtaatatttt taaagttctg
    61381 ctctattttt ttcaaatcct ctttagaaaa ttcaaccgat gagagattaa attcatttaa
    61441 ctcatagttt ttacactctt ggttaaaatt ccacacccaa agatcatata tatttttttc
    61501 ttgctttttc catctatctt catatttgct tgaaatttct aaattttcat tttttctaag
    61561 actaaatttt ggagcaggaa aagttaaaaa ttgttctaga gtaaaattaa aatactcaaa
    61621 actatctgtt ctaagctcaa aacgaccatt ttgggttaaa accctagcac attctttgca
    61681 aaaatctttc ccaataactc gcctatgagg ctttttgtcc caaggaacag ggaaatgtaa
    61741 aaaaatcttt tcaactgatt ttgattttaa tacactcaat aacaatctcg catcactttg
    61801 gattagcaaa atattattta cattttgtgc tttagcaagt ttagccactt gagttaaagc
    61861 tgggttgtaa atttccaccc ctaaaattaa aacatttgga ttttcttttg cttgataaag
    61921 caaatgtctt cctgatccaa agcctatttc tatataaatt ttaccttgaa gtctagataa
    61981 aagctcatca aaattatcaa cgataaatgg tgttttttca attaaagcat tatttttaag
    62041 tccaaaagct tcattgataa tatcctcaca aaaaccttct ttaaagattt ttaaagcctt
    62101 ttgcaaataa cctattttag aaggttttgt atgtttatcg cctttaatca caaaaccatt
    62161 ttgtgctttt ttaatctgca gaaaaaaact ctcttcttga acctttgtat aaataagact
    62221 aacattatca ttcttagtaa gccaaagaaa ttcaacatca tccttactat aaggcagatt
    62281 tatttctttg atctttttac ttttaaaatt tggcactact gagccgcctt aactttgctt
    62341 gaaggttctg aacgaagtcc agctgaatca atagcaataa cttcataact atattccacc
    62401 cctggtaaag cttttacatc ttttaatcgc ttttctttaa tgcctttaaa aactgcattt
    62461 tgctccccac catagcgtct tatttcatac tcaacagctc tagcatcatt atcactccat
    62521 tctaaattta tcccttcact tgtgctttgg gccaaaataa tactaggagc caaagggtta
    62581 cccaaagttt taccttctac accatctttt ggcataggac tttcaagacc atctttatcg
    62641 accattgtta ctttataata cttgctttta cctgctcctt ctactatatc ctcataagaa
    62701 tttttatcag tctttgccaa aacactaaaa ggaaggaaac ttgagctcgt agaataaact
    62761 ttataataag aaaaatcttc atacgtagga gcatcccaag ttaaaatgat tttattagaa
    62821 ccatctgtac tagcacttaa atgctcaact tgaggaggta aagccttgct tgtagaactt
    62881 acaacttgac ttggctcact ctttatccca ttaaaactca cagcaataat tctataactt
    62941 gaattttcat taggttttaa atcactatcg atgtattcag cgtttaaacg attttttact
    63001 tctgcaattt ttttaaattc tttatcatca cctttggttc tttcaataat ataagaatca
    63061 accctaaaat caggatgcgg acgccaaata agtttaatac gattaggcaa attagtcaca
    63121 gcttgaacaa aaggaacagc ttcaagtctt ggagctgtgc tcacttctat aaccttgcta
    63181 tcttctgaaa tttgtccttg ttcattaaag cttttcatca tataacgata cttagtacca
    63241 ggctctaatt tagtatctac ataatgagtt tgaaacttat ctttaatagt acctacaagt
    63301 ttaaaatcag gattttcatc gctagaacga tacagataaa atcctttgat attttcatta
    63361 tataaaggtt cccattcaaa agcaatgtta ctcatatcac taagattttt taaactttca
    63421 acctttggca agctctcatt tacagcaggc tctttgcttg aagctagcga attcatttgc
    63481 gaaacactac aagcactaag caaaagagtt aaaaaactca agtaaaaact caagcgaaat
    63541 cttttcatca ttctctccta aattaatttg ttcaaacata atatttttaa aatcttccat
    63601 caaaggtgct ttaacaaaaa tttgctcttt ggtttttgga tggataaaat acaaaaaata
    63661 agcatgtagc attatcctgc aatcatactt accgttataa ccatacaaac catcacccaa
    63721 aatatggcga tttaaactag ctaaatgcgc tctaatttga tgagttcttc ctgtgaaaag
    63781 cttagcagcc atcaaagtta agttttcagt ttttactaca tttataaaag ctgattttgc
    63841 gtttttactg aatttatttt ccttatctat ggctattttt ttaatagcat tagaaggcga
    63901 acgcattaaa aatttttcta ctataatttt atcttctttt agtggcaaat caattaacgc
    63961 aagataaatt cttcccatgc ttttatctgc aagctgttcg cttaattttt gatgagtgaa
    64021 gttatttttc gctattagta tagctccgct tgtatcttta tctaatctat gaacaagacc
    64081 agctcttatc tctcctccta aatttgataa agtatatttt ttttctatta accaatccac
    64141 caaagtggca tttttaacgc tacttgctcc atgaacgact aaatttgaag gtttatttaa
    64201 aacaagcaag tcttcatctt cgtataacac atcaatatca aaatccactt caaactgagg
    64261 ttttatctca tcgcaaaact ttaaacttgc aatagaaata atatcaccat ttttaagctt
    64321 aaatgaattt ttatcttgaa ttttatcatt aacctgtaca caatcttttt ctataagtaa
    64381 agcaacttga ttgcgacttt ggtttaattt tttagccaaa aatacatcaa gccttgaatt
    64441 ttcatctact aaaaaagttt gcattttttc cttagaggtt ttgataaatt taaaatttta
    64501 gtttataatt atagctttat attaccaact gaaggcaaat tttgtttaga ttagatagaa
    64561 gaattttaac tcattttgac tatatgcaac ccattttatt tttacccata attcttattt
    64621 catttttctt aatctttgaa gctaatcctt ttttagcaga aaaacagttt gtttatgcct
    64681 gtgtgggatt gtttgctttt atggtttttt tcttctttcc cataaggaaa tttatttgga
    64741 ttattcctgt tgcttattgg attaatattt ttttattgct aagcgtagat atttttgggg
    64801 ttgaaaaatt aggtgctaaa agatggcttg aaattccttt tactcacttt actatacaac
    64861 cttctgaaat ttttaaacct agttttattt taatgcttgc ctatcttatt tatcaaaatc
    64921 ctcctccaaa aaatggatac aaacttaaac aattcatcaa acttagcttt tacatcatct
    64981 tgcctttttt gctaattgca aaagaacctg atttaggaag tgctatggtt ttactacttg
    65041 ttggttttgg agtgcttttt atcatgggag ttcattataa aatttggtta agtattgtta
    65101 tagctataag tgttagctct cctattattt atacacatct tttaaaaccc taccaaaagc
    65161 aaagaattca tgattttatt tcagaaaaac caagttatca agtagcccaa tcaatgatag
    65221 ctattggaaa tggtggttta accggaaaat ctcaagatga agctacgcaa actcatttta
    65281 aatttttacc tatttcaact agtgatttta ttttcgctta catgatagaa agatttggat
    65341 ttattggggg attgacatta attatatttt atattttact tatttttcat ctacttagtt
    65401 taaattataa acttaaagat gattattttg ctagagttgc tattaattgt gttgcattat
    65461 ttatttttat ttatgcggca gtaaatattt caatgactat aggttttgca ccagtagttg
    65521 ggatcccttt gccttttttt agttatggtg gaagttcttt tactattttt atgatttttt
    65581 ttggaatttt acagcattta atcactttta gatatttttg gacggatata aaggctaaat
    65641 aaaatatttt taagcattaa taagatataa ttttatcttt taattcaact taggcggatt
    65701 tatagctcag ttggttagag caaccggctc ataaccggtt ggtcgcaggt tcgagtcctg
    65761 ctaaatccac cattctacat ataagctata gactctttct ttaaaaaata acttttagtt
    65821 ctttaaatat ttcaatctta tataaaaaaa gtatgtgatg tgattttttg aaagataaag
    65881 tggtggttag aggcagaatc gaactgccga cacgcagatt ttcagtctgc tgctctaccg
    65941 actgagctat ccaaccacaa tgtttgataa agtaaagttt gataaagtaa aaatgtaatt
    66001 gtatcttttt ttctttaatt taagtttaaa tacaaaaata aaattttatt tcccttaaag
    66061 ttttaataag atagaatacc cgctttagat cattatcaaa tggaaatttt ttgaaacaat
    66121 ttggactaga tagacgaact tttaaaattt tactagctgg ttatattatt attgcattgt
    66181 ttggggcttt attgctacat tcaagctggg cacatacaac tcctattgat tttttagatg
    66241 ccttttttac aagcacatct gctgttagta tgacaggatt agtagttaag aacactgcgg
    66301 ttgattttac cttagcagga caaattatta tcttagcttt ggtgcaaatt ggaggcttgg
    66361 gatatatggg tataggttta tttgtttata tactcatacg caaaaaagtt ggttttagtg
    66421 caagaaattt actaaaagag tctttatttt atccatcaat ggatggttta tttaaatttt
    66481 ttaaaaaggt tttgctgttc atttttacta tagaattgat aggtgctata cttcttgcca
    66541 tgcgttttgc ccttgaaatg aattttaaga aagctttatg gtttggaatt tttcattcta
    66601 ttagcgcttt taataattct gggtttacta tatttgaaca tgggcttata gcttataaac
    66661 atgatatagc aattaatctt attatcactt ctttgattat tattggaggg cttggatatt
    66721 ttgttttggt tgaattatac ttttttcaaa gaaaaaaatt gcaaaattta agcctacata
    66781 caaaaatagt tgttgttgca agtatttttc ttatactctc ttcaacactt attatttttg
    66841 cttttgaata ctcaaatcct caaactatag gacatttttc attttttgat aaaattttaa
    66901 gctcatattt tatcgctatt aactaccgta cagcaggatt taatacctta gatatgggac
    66961 atttgcatga tgcaagctta ttttttggat cattgtttat ggttattggt ggtgcaccag
    67021 gtggaacagc tgggggtatg aaagtaacaa ctgtaatggt tttattgctc tatgcttatt
    67081 ggagtatccg cgatggaaga gttagaattt ttggacatga aattccaaga gaaactatat
    67141 ctaaagcttt tatcatagct gtaggttcag ctgtttatat agtaatagct gttattttgc
    67201 tttccttgct agagtcaaaa tttgatttta tagccttgct ttttgaaact tcttcagctt
    67261 ttgcaactgt aggaatttca gtaggaaatg gtggaacttt atctttatgc gctttgttta
    67321 gtgatcctag caaggtaatt atcatcatta tgatgctaag tggtaggata ggtgtttttg
    67381 cttttttact ctcggtattc aaacaagaca aagctattca tttaaaattc cctgaaggaa
    67441 aggttaattt ataaaggtaa aatcgtgaaa aatcttaatt atggaattat aggacttgga
    67501 aaatttggct cagttgtagc agatgaactc attgctggag gtcatactgt tatcgttgca
    67561 gataaagatg aggaagcttt aaaaagcata caaaatcctc caagttatgc ttatatttta
    67621 gattctacaa atatttcagc cctaaaagaa gcaggctttc atgatgttga agttgttatt
    67681 gtcagcatag gagaaaatgt tgaaaaatca atccttactc ttatggcgct taaagatata
    67741 ggtgttaaaa atatcattgc taaagcaacc tctaacatcc atggtcaaat tctttctaag
    67801 ttaggcgcca caaaggttat ttatcctgaa aaagaaagtg ctaaaagact agtaaaagaa
    67861 tttttaacca aagatgctga ttatgaagtt tttgatcttt cagcaaatac tatacgagct
    67921 attaagatca atatagatga aaaattagca ggaaattctt taaaacatgt agcacaaaat
    67981 atgaaagtga tttcttataa aaaattaaat agcgactggg aaatactacc tgatttagaa
    68041 accacgacag tttatagtgg agatgttgta attctccttg gaacagttaa ggaacttaga
    68101 gaatttgaac actaagcaag atttaaagcc ttgcaagcct ttacaaaacg ctttaaggct
    68161 gttttttctt tggtagaaat tttatgatat ataacttcat ctaaataata tctaacatct
    68221 tttatatcta aatcccttgt tttggcatat ttttgaagta tataataggg aattttaatc
    68281 tttgtttttg gaaatttttt caaaatttgt ttatataaag cttttttttg cacacaagaa
    68341 aatctagcaa aaacaaaagg caatcctgtt ttttcatgcc attttgcaca taaatcgata
    68401 tatttagaag gatcttttag ataaagcttt aaagccttat cgcctataat tacttttcca
    68461 tcttgtttta atactttagc taaagcattt gaagttgctg aacttggatc tttggcattt
    68521 aatgtatttt tttctactaa aacacttaaa actcttttat tggcacaaat acccaaatct
    68581 aaatttttat atttttttct agcgctttct atgcttgaaa tgatagctgc atcaattctt
    68641 ctataaaata aatctttatt tagcttactt ggaactcctt ttttatgctc catacttgct
    68701 ttaaaaccat taggtaaggg atatttctta agatatatat gcaaaggtaa aagattaata
    68761 taatcaattt ttccaaaaat catctctttt aaagagtgtt aaacactcta tctcctgcat
    68821 ctccaagccc tgggataata taaccttttt catttaaacc ttcatcaata caagccacaa
    68881 aaacttctac atcatcatgc gtttggctaa atttttgcaa accttgtaaa gcagcaagta
    68941 tggatataaa ttttattttt ttaactcctt ggctttttaa aaaattacaa acctctatag
    69001 cagtcccacc tgtagcaaac ataggatcta taacaatagc ggtgcgtttt tttgcatctt
    69061 tgggaagttt ttgaaaataa aaatccgcct ttaaagtctc ttcatttctc acaaacccca
    69121 aaaatccaac acttgcatca ggaatcatct taaaaacact ttcaagcatt cctaatgcag
    69181 ctcttaaaat aggacaaatc ataatctttt catcaagttt ttttactata gttttttgta
    69241 taggtgttga aatttcaatt tcttttaaag aaaaatcttt actcacttca aaaagcaaaa
    69301 aagatgaaat ttcatcgatt aacatacgaa attgaaaggg ctttgtctct ttagccctta
    69361 aaattcctaa cttatgttcg atcaatggat gattgataca atgaatattt ttcattttaa
    69421 gctttcaaaa taagctttct cgttaaaatt ttttacctta gccacaccat cttttaccgc
    69481 agctgctgct acagctgtac ttactgcagc ttttactctt tcatcaaaag gttttggtat
    69541 gacataatct cttccaaatt ctaaggtact taaattataa gcctttttaa ctgcatcact
    69601 tacaggaagt tttgcaagat ctgctaatgc tttagcagcc gctactttca tattttcagt
    69661 gattttactt gcacgcacat ctaaagcccc acggaaaata aaaggaaaac ctaaaacatt
    69721 attgatttga tttggataat cacttcttcc tgttcctaca atcgtatctt ttctaagtct
    69781 agctacatct tcaggcatca cttcaggaat aggatttgcc aaagcaaaaa tcacaggatc
    69841 ttttgccatg cttaaaacca tttcatcatc aagaattttt ggcgcactaa gtcctaggaa
    69901 aacatcagct ccttttaaaa cgtcttttaa agtcttttcc ttagaatcaa cagcaaattc
    69961 aagcttttga ggagttaaat catttctatc tttagaaatc actcctttgc tatctactaa
    70021 aataatattt tcaaccccta aatttctata catcttagca cttgctatac ctgcggcacc
    70081 tgcgccactt acaaccacct taatgtcttt aaatttttta ccgcttatct ccattgcatt
    70141 cataagccct gcagttgaaa taatagctgt tccgtgctga tcatcgtgca ttacaggaat
    70201 tcctaaatct tgcaaagccg cttcgatttc aaaacatttt ggagcagcta tatcttctaa
    70261 atttatcccg cccacagttg gagccaaagc tttgcaaaaa tttacaatct cttccacact
    70321 atgaacatca atttctatat cataagcatt gacatttgca aattttttaa acaaacaagc
    70381 cttaccttcc ataacaggtt ttgaagcctg cgctcctatg tttccaagtc ctaaaacagc
    70441 agaaccatca ctaactatag ctactaaatt agccttattt gtataagtat aagcaagctc
    70501 attatcttta gcgatttcaa ggcaaggttc tgcaactcct gggctatacg ccaaagatag
    70561 atcatggctt gtagccattg gcttacttgg tacaatatca attttcccac ctaaatggta
    70621 ttttaaagct tcttctttta aattcatttt attttcctct aacttttaaa aaattttcta
    70681 ttcttttttt gcactcatca acctctaaaa attctaatac ttcaaaaata ctaggactta
    70741 ccgcactccc tgttaaagct atgcgtatag gctgagccaa atcttttaac tttgcttctt
    70801 ttttttctaa aaaatcattt gtaaaatctt caaaatcttt acctgttttt tgatctttaa
    70861 gtgtattagc aaatgcttgg agcaattcta aattattttt gttaataaat ttttgtactg
    70921 cattttcatc ataattttgc ggtgcattaa ctatactttt tgcaccattg ataatatcat
    70981 gcaaggtttt tgcacgctct cttaataaat caagtaaaaa tcctgccttt tcataaacag
    71041 ataaatcaaa gccaagatcc ttaagctgac ggttaatctc ttcaaaaggc aaagttttaa
    71101 tataatgagc gttaagccat tcaagctttt taacattata acaagatgcg cttttattaa
    71161 tatgataagg gtcaaaaagt tttttcaaat cttctaatga aaaaacctca tcatcaccat
    71221 ggctccaacc taaacgcaca agaaaattaa gcaaagcttg aggtaaaatt cccatttctt
    71281 tgtattccat aacatcagtt gccccatgtc tttttgaaag ctttttacca tcttctccat
    71341 gtatcatagc cacatgaaaa aatttaggaa ttttaaaacc caatgcctca taaagcacaa
    71401 tttgtttagg agtatttgaa agatgatcat ctccgcgaat cacatcactt acccccatta
    71461 aagcatcatc aataacaaca gtaaaattat aagttggagt tccatcactt cttgcaatga
    71521 taaaatcatc cattatatcc tctgctttaa atctcacctc gcctttaacc ccatcttcaa
    71581 aaacaatctc accgctttga ggtgctttaa tacgcacaac aggctctata ccctgaggtg
    71641 gcgtgcctgt aaattctcta tatcttccat catatcttgg gcgctctttg gcagcttctt
    71701 gcttggcgcg caattcttct aattcttctt tactcatata acaataatac gctttacctt
    71761 catctaaaag ctttttaaca tattctttat aaagatcaaa acgctctgat tggtaagtta
    71821 cttctccatc atgttctaaa ccgcaccatt taaaagcttc gataattgct ttagtagctt
    71881 ctttggaatt tctttttaaa tccgtatctt cgatacgaag taaaaaattt ccaccatttt
    71941 ttctagcgta taaataatta taaagagctg ttctaagtcc acctatgtgc aaataccctg
    72001 ttgggcttgg agcaaaacgc gttgtaagtt tttcgtgcat tttttgcctt ttcttaaatt
    72061 tttattgata taatgcgata tttatactta aataaaggtt tgaaatgaaa aaaattttat
    72121 taagttttgc attttttgca agtttagcta gtgcaaatac cattaatgct atagccgtag
    72181 ttgtagataa agagcctatc acaacttatg atatagatca aactatgaaa gcacttaaaa
    72241 ttgatagaaa taaagcttta ggcgtactca tcaatgaaaa aatggaaatt tcacaaatga
    72301 aacaactagg tattgtagtc aatgatctag agcttgatga tgctataaat aaaatgctta
    72361 ctcaaaacaa aacgacttta aatgctttca aagcaaattt aaaatccaaa aatcaaagct
    72421 atgaacaatt tcgtgcaaat tttaaaaaag atttagaaaa aagaaagctt tatgaaaaaa
    72481 tcgcaagtat ggcaaaaact gattttagtg atgatggagc aaaaaaattt ttcgaacaaa
    72541 ataaagataa attcactttt tatacacaaa ttaatgcaaa tatttatcta tcaaacaatc
    72601 ctcaaacttt agaaaatatc aaaaatacaa aaaaaacaat ccttaaacca caaaatgcat
    72661 ctttaaacac aagtaatgcc gatccaagac ttttagggct tttatcacaa attcctgttg
    72721 gaggcttttc ccctgtttta aatggaaaaa atggctatga actctatgaa gttaaaagca
    72781 aagatggggc acaaactcct gaatatgaac aagttaaaaa tgaagtttta aacgcttatg
    72841 taagcgaaca aagacaaaat ttcatacagg attattttga taaactccgc tctaaaatca
    72901 atatagaata tttaagataa aaattacaat taaaatttcc ctttaatagg gaaattttaa
    72961 tgtcttgcaa gataatttgt atcgtaatta ttattaataa aatcaggatt ttccatcata
    73021 gaaagatgaa aatctttggt tgtttttatc ccacttataa gcaactcatc taaagctact
    73081 ttcatttttg caatagcttt attacgatct tctgcccaaa ctacaagttt gcctatcata
    73141 gaatcataat aaggaggcac gctatagtct tgataacaat gactttccat tctgacattg
    73201 cgtcctgcgg gtggaatgta tttagtaatc ttacctggac ttggcaagaa agttttggaa
    73261 tcttcggctg tgattctaca ttctatagaa tgcccattta atttaatact ttcttgagat
    73321 ggtaaagcat aaccttctgc tactttaatc atttgttcta tgatatcaat cccacttacc
    73381 atttcactta cacagtgttc aacttgcaaa cgcgtattca tttctataaa ataaaaatcc
    73441 aaatttttat ctaccaaaaa ctcaaaagtt cccgcacctt catatcctat agctttagct
    73501 gccttaatag cagtttcatg aagtctagtg cgtgtttttt catcaagcaa aatcgcaggg
    73561 gattcttcta taagtttttg atggcgtctt tgcatagaac aatctctttc gcccacatga
    73621 atcacattgc caaaactatc tcctataacc tgtacttcta tatggcgtgg attttgtatg
    73681 tatttttcca tatacatagt tccatcgcca aatgctgtca tagcctcgct ttcagccgac
    73741 caatacgctt tttcaagatc tttttcattt tcaaccacac gcataccacg accaccacca
    73801 cctgcagctg cttttaaaat cacaggataa cctatttctt tggcaagttt tttagctgct
    73861 tcagctcctg ccaaagcccc atcgcttcct gggatcacag gtacgcctgc tctttgcatg
    73921 acttgttttg cttttgattt atcactcatt aaattcatag cttccacaga aggacctata
    73981 aatttgatgt tatgtttagc acaaatttca acaaaatttt gattttcact taaaaatccg
    74041 tatcctggaa aaatcgcatc tgcttcagca atttcagctg ctgtaataat ggctgggata
    74101 tttaaatagc tttcagaact tcttgctttg cctatacaaa tgcttgcatc agcgtatttt
    74161 aaatacaaag catctttatc tgcttcagag tacacacaaa ttgctttttt gcccatttct
    74221 ttaatcgttc ttaaagcacg cagtgctatt tctccacgat tagcaattaa tatgctttta
    74281 atttccattt tataatttct ccaccgcaaa taaaggcatt ccaaattcta caggctgacc
    74341 atcagcaact aaaatttcag cgatcctaca atcaaattcc gcttcaattt cattcatgat
    74401 tttcatcgct tcgataatag ctatagtatc gcctttttta accgtactac ctacttttac
    74461 aaaaggtgct gcacctggac ttggagcttg atagaaagtt cctaccatag ggctatttat
    74521 acttggtttg tttgatttta cactttgact aggttgagct tcgtttacaa cgcttacatt
    74581 gataggttgt ggagctggaa ctggaggaca aacaggagct ggaacatcgc agcacatatc
    74641 tctttcaagt tctatttcaa aaccatcttg ttctttgatc ttaattttac taatatttgc
    74701 ttcagcaaaa aggtttacta actctttaat ttcttctttt gtcataaaat tctcctacaa
    74761 aatttaagaa cttaaccttg tattatataa aaaaacttga aatttaactt taaaaaagaa
    74821 aaaaatcata aaaaatatag attttttagg ttataatcct tacaaacaat tacaaatatt
    74881 aaaaggttaa aaatgggctt aaaagcggat aattggataa gaaaaatggc attagaacac
    74941 aagatgatcg aaccattttg cgaagcaaat ataggaaaag gtgtggtaag ctatggactt
    75001 tcaagctatg gttatgatat acgcgtagga cgtgagttta aaatttttac caatgttaat
    75061 tcaactgtag tggatccaaa aaatttcgta gaagaaaatg tagtagattt tgaaggtgat
    75121 gtatgtatag ttcctgcaaa ttcttttgcc ctagctagaa ctatagagta ttttaaaatg
    75181 cctgatgatg tcttagctat ttgtcttggc aaaagcactt atgcaagatg tggtatcatc
    75241 gtcaatgtta ccccttttga accaggtttt gaaggacata ttactataga aatttcaaat
    75301 actacgcctt tacctgcaaa aatttatgct aatgaaggca tagcacaagt gttgttttta
    75361 caaggtgatg aaaaatgtga caccacttat aaagataaaa aaggcaagta tcaagctcaa
    75421 acgggcataa ccttgccaag aattttaaaa taggaacact tgttgcttta attttaaaaa
    75481 acttaagcaa aggaaggcaa aatgtttaac ggaaaaaata tcttaatcac gggcggaaca
    75541 ggctcttttg gaaaaaccta tactaaggtt ttgctagaaa attataaacc taataaaatc
    75601 atcatttatt ctcgtgatga gctcaaacaa tttgaaatgg caagcgtttt taatgctcct
    75661 tgtatgcgtt atttcatagg agatgtaaga gataaagagc gtttaagtgc tgctatgcgt
    75721 gatgtggatt ttgttataca tgctgctgca atgaagcatg tgcctattgc tgaatataac
    75781 cctatggaat gtataaaaac aaacatacac ggtgcgcaaa atgtcatcga cgcttgtttt
    75841 gaaaatgggg ttaaaaaatg tatcgctctt agtacggata aggcttgtaa tcctgtaaat
    75901 ttatacggtg caaccaaact tgcaagcgat aagctttttg tcgctgcaaa caacatagca
    75961 ggtaacaagc aaacacgctt tggtgttaca agatatggca atgttgtagg ttcaagaggt
    76021 tcagtggtgc ctttctttaa aaaactcatc agcgaaggag ctaaagaact tcctatcacc
    76081 gatacgagaa tgactcgttt ttggatcagc cttgaagatg gagtaaaatt tgtactgagt
    76141 aattttgaaa gaatgcatgg aggagaaatc tttatcccta aaattccttc gatgaaaatc
    76201 accgatctag cccatgctct agctcctaat ttaagccata aaatcatagg cataagagca
    76261 ggagaaaaac tacatgaaat catgatttca agcgatgata gccatttaac ctatgaattt
    76321 gaaaactact atgctataag cccgagtatt aaatttgtag ataaagataa tgactttagt
    76381 atcaatgccc taggcgaaaa agggcaaaag gtaaaagatg gtttttctta tagctcggat
    76441 aataatcctt tatgggcaag cgaaaaagaa cttttagaaa tcatcaatca caccgagggt
    76501 ttttaaaatg cttacttatt ctcatcaaaa catcgatcaa agcgatatag atacgcttac
    76561 aaaagcttta aaagatgaaa ttttaactgg aggtaaaaag gtagatgaat ttgaagaagc
    76621 cctttgcgaa tatgtgggcg taaaacacgc ttgtgtatta aactcagcta cttcagctct
    76681 tcatcttgcc tacacagcac taggtgtcca agaaaaaatc gttttaacca ctcctttaac
    76741 cttcgctgct acggctaatg cagccttaat agctggagct aaggtagagt ttatcgacat
    76801 taaaaacgat ggcaatattg acgaaaaaaa actagaagca agacttttaa aagatagtaa
    76861 aaatatagga gctattagcg tggtggattt tgggggaaat agcgttgaaa tagatgaaat
    76921 ttcaagcctt gctaaaaaat acaatatccc tttaatcgat gatgcaagcc atgctttagg
    76981 tgccttatat aaaagtgaaa aagtaggaaa aaaagccgat ctttctatct tttcttttca
    77041 tcctgttaaa cccatcacta cttttgaagg cggggctgtg gtgagtgata ataaagagct
    77101 tatcaccaaa atcaagcttt taagaagcca tggtatcatt aaaaaaaggc tttgggatag
    77161 cgatatgata gaacttggct ataattaccg cttaagcgat gttgcttgtg ctttagggat
    77221 aaaccagctt aaaaaactcg atcacaatct tgaaaaaaga gaagaaattg caagttttta
    77281 cgataaagaa tttgaaaaaa atccttattt ttccacgata aaaatcaaaa attataaaaa
    77341 aagctcaaga catttatacc ctatcttgct ttttcctgaa ttttattgtc aaaaagaaga
    77401 actttttgaa agcttgcttc atgcaggagt tggtgtacag gtgcattaca aacctactta
    77461 tgagtttagt ttttataaaa aactcttagg agaaataaaa ctccgaaatg cggataattt
    77521 ttacaaagcc gagcttagca taccttgtca tcaagaaatg aatctaaaag atgcaaaatt
    77581 tgtaaaagat actttattta gcattcttga aaaagttaaa aagggatatt gtgaataagc
    77641 tagactttag aagccaagat tttagccaaa ctggaaaggc tatgtaataa actagcttgc
    77701 gaactttttc ctatccctag aagcatcaca gggcaaggtt ttagagatag cttagaaatt
    77761 ttaaat
//
LOCUS       DARGEX010000002        48276 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.002, whole genome shotgun sequence.
ACCESSION   DARGEX010000002 DARGEX010000000
VERSION     DARGEX010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 48276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 48276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..48276
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.002"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(179..1216)
                     /locus_tag="SF010_000078"
     CDS             complement(179..1216)
                     /locus_tag="SF010_000078"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG8229050.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     AAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1270..2841)
                     /gene="recJ"
                     /locus_tag="SF010_000079"
     CDS             complement(1270..2841)
                     /gene="recJ"
                     /locus_tag="SF010_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG8229051.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2828..4459)
                     /locus_tag="SF010_000080"
     CDS             complement(2828..4459)
                     /locus_tag="SF010_000080"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG8229052.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDVNSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKYGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4579..5202
                     /locus_tag="SF010_000081"
     CDS             4579..5202
                     /locus_tag="SF010_000081"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG8229053.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5322..6707
                     /locus_tag="SF010_000082"
     CDS             5322..6707
                     /locus_tag="SF010_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HEG8229054.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAILCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MFIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6746..9115)
                     /locus_tag="SF010_000083"
     CDS             complement(6746..9115)
                     /locus_tag="SF010_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG8229055.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     QKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9131..10459)
                     /locus_tag="SF010_000084"
     CDS             complement(9131..10459)
                     /locus_tag="SF010_000084"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8229056.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10537..11439
                     /locus_tag="SF010_000085"
     CDS             10537..11439
                     /locus_tag="SF010_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8229057.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            11552..12430
                     /locus_tag="SF010_000086"
     CDS             11552..12430
                     /locus_tag="SF010_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG8229058.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12494..13408
                     /locus_tag="SF010_000087"
     CDS             12494..13408
                     /locus_tag="SF010_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8229059.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13398..15176
                     /locus_tag="SF010_000088"
     CDS             13398..15176
                     /locus_tag="SF010_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8229060.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLGIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15282..15449
                     /gene="dba"
                     /locus_tag="SF010_000089"
     CDS             15282..15449
                     /gene="dba"
                     /locus_tag="SF010_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG8229061.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15461..16987
                     /gene="dsbI"
                     /locus_tag="SF010_000090"
     CDS             15461..16987
                     /gene="dsbI"
                     /locus_tag="SF010_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG8229062.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFISTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(17008..17682)
                     /gene="queC"
                     /locus_tag="SF010_000091"
     CDS             complement(17008..17682)
                     /gene="queC"
                     /locus_tag="SF010_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG8229063.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17758..18984
                     /locus_tag="SF010_000092"
     CDS             17758..18984
                     /locus_tag="SF010_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG8229064.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRGEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            19076..19600
                     /locus_tag="SF010_000093"
     CDS             19076..19600
                     /locus_tag="SF010_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HEG8229065.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWIYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIVMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19612..21288)
                     /gene="ilvD"
                     /locus_tag="SF010_000094"
     CDS             complement(19612..21288)
                     /gene="ilvD"
                     /locus_tag="SF010_000094"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG8229066.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNNYAKIIKDEICKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21448..22095
                     /locus_tag="SF010_000095"
     CDS             21448..22095
                     /locus_tag="SF010_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG8229067.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22160..22399
                     /locus_tag="SF010_000096"
     CDS             22160..22399
                     /locus_tag="SF010_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG8229068.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            22432..23006
                     /locus_tag="SF010_000097"
                     /pseudo
     CDS             22432..23006
                     /locus_tag="SF010_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
     gene            complement(23007..24452)
                     /locus_tag="SF010_000098"
     CDS             complement(23007..24452)
                     /locus_tag="SF010_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG8229069.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGTSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKNGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVECVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24462..28952)
                     /gene="gltB"
                     /locus_tag="SF010_000099"
     CDS             complement(24462..28952)
                     /gene="gltB"
                     /locus_tag="SF010_000099"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG8229070.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIVNKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIVGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(29086..30393)
                     /locus_tag="SF010_000100"
     CDS             complement(29086..30393)
                     /locus_tag="SF010_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG8229071.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            30597..31835
                     /locus_tag="SF010_000101"
     CDS             30597..31835
                     /locus_tag="SF010_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG8229072.1"
                     /translation="MKQNNQKEDRRNFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNIYGV"
     gene            31838..32179
                     /locus_tag="SF010_000102"
     CDS             31838..32179
                     /locus_tag="SF010_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG8229073.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(32205..34514)
                     /gene="gyrB"
                     /locus_tag="SF010_000103"
     CDS             complement(32205..34514)
                     /gene="gyrB"
                     /locus_tag="SF010_000103"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG8229074.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(34543..35610)
                     /locus_tag="SF010_000104"
     CDS             complement(34543..35610)
                     /locus_tag="SF010_000104"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG8229075.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMRLYF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            complement(35770..37092)
                     /gene="dnaA"
                     /locus_tag="SF010_000105"
     CDS             complement(35770..37092)
                     /gene="dnaA"
                     /locus_tag="SF010_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG8229076.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQNNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            37188..37670
                     /gene="ruvC"
                     /locus_tag="SF010_000106"
     CDS             37188..37670
                     /gene="ruvC"
                     /locus_tag="SF010_000106"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG8229077.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            37874..40408
                     /gene="flgE"
                     /locus_tag="SF010_000107"
     CDS             37874..40408
                     /gene="flgE"
                     /locus_tag="SF010_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8229078.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTDKPANVNVFD
                     PNNHTNQNGSIFWGDKDNAVILDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG
                     TGVKAVKKADGSGIEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTA
                     TSAKNNANSVWIPTAANVNGNAESIQIITAHKYIYSSTPVDIPPMYNPDGGPNFIANG
                     NQRPTDPASANYWDAIQGSLKNATERTFRTTEDLRELLQRDARYGVDYDGNGSSGYDA
                     NDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNITAYSNKQG
                     TVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVK
                     QSTTQDGGNEWQMIIRVPEPAEINTTGEGPTNIIVGTARFNNDGSLANYTPKTINFSP
                     NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNI
                     LGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKT
                     SALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            40654..41037
                     /gene="queF"
                     /locus_tag="SF010_000108"
     CDS             40654..41037
                     /gene="queF"
                     /locus_tag="SF010_000108"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG8229079.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            41175..41819
                     /locus_tag="SF010_000109"
     CDS             41175..41819
                     /locus_tag="SF010_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG8229080.1"
                     /translation="MNKKLLSIIASTTLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(41855..42484)
                     /locus_tag="SF010_000110"
     CDS             complement(41855..42484)
                     /locus_tag="SF010_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229081.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            42804..44339
                     /gene="leuA"
                     /locus_tag="SF010_000111"
     CDS             42804..44339
                     /gene="leuA"
                     /locus_tag="SF010_000111"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG8229082.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTLIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQIYEIISPSAIGIHDNRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            44336..45412
                     /gene="leuB"
                     /locus_tag="SF010_000112"
     CDS             44336..45412
                     /gene="leuB"
                     /locus_tag="SF010_000112"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG8229083.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFISQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERITHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            45399..46811
                     /gene="leuC"
                     /locus_tag="SF010_000113"
     CDS             45399..46811
                     /gene="leuC"
                     /locus_tag="SF010_000113"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG8229084.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            46813..47415
                     /gene="leuD"
                     /locus_tag="SF010_000114"
     CDS             46813..47415
                     /gene="leuD"
                     /locus_tag="SF010_000114"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG8229085.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(47395..47925)
                     /locus_tag="SF010_000115"
     CDS             complement(47395..47925)
                     /locus_tag="SF010_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8229086.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     KAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(47953..48028)
                     /locus_tag="SF010_000116"
     tRNA            complement(47953..48028)
                     /locus_tag="SF010_000116"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47993..47995),aa:Val,seq:gac)
     gene            complement(48032..48107)
                     /locus_tag="SF010_000117"
     tRNA            complement(48032..48107)
                     /locus_tag="SF010_000117"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(48072..48074),aa:Ala,seq:ggc)
BASE COUNT        16326 a         8107 c         7437 g        16406 t
ORIGIN      
        1 aaggattaaa tagtataaat atttgtgtaa gtatttatat aagtatttgg tgggttgaaa
       61 aatgggggct atattttaat gataataaaa aatacaagat ataatatact attaatagga
      121 ttgaaaggct tgacttaggg aagataagtt ccctaagttt agaaatattt aaaaaatttt
      181 aatattttaa aaaatactct tgaatttttt taggatcact tgtttttgta agtgctaaca
      241 taagcaaaac tcttgctttt tgaggattta aatcttcagc actaataaaa cctaattttt
      301 catctgaatc actcacagca acacaacctg ctacaaccct tgaacttaca acaaccttaa
      361 gccctttttt taaaagctct tttaaaacat ctttttgatt tttgtgtata cttcctgctc
      421 cacttcctgc aacaactatg cccttagttc catgttcaaa taaagctttt gcagcgacac
      481 cactaccatc atttgaatag ctataaagaa tatctacttt tggcaaactt gtgagtttgc
      541 ttacatcaaa aggagcgttt tttgtgtgag ctttaataac attattatag aaaaagactt
      601 taccatctac tatataaccc aaatccccaa aatcaggaga agagaaagca tcaacattta
      661 aactatgagt ttttactacg cctctagcgc ttaaaatttt atcatttata gctaccataa
      721 cacccttatt cttagcttct ttattgacaa ctaatgccac tgcattataa agatttttcg
      781 gaccatccgc acttatagca gttgatggac gcatagcgcc aactagaact acgggcttat
      841 cacttttaat ggttaaattt aaaaaataag cagtttcttc catagtatca gtaccatgag
      901 ttatcaccac accgtctatc ccctcagcaa aaagcttagc aattttttta gcaagcctta
      961 accaaatttc atcacacata tttgaactat caatatttgc tatttgctcc caactaatat
     1021 ctgctaaatc tctaatttgc ggaactgctt taattaatac atctatatca atggctccgg
     1081 ccgcatatcc tgttgtagca atagtgctat caatgaagcc tgctatcgtt ccgcctgttc
     1141 ctaaaatagc aatccttgat ttagcttttt tcatacatac tcctataaaa agacaacata
     1201 taaataattt tttaatctct tgtatattaa ttttttaatg ttattaatgc aaattataag
     1261 taaaaatttt tataaaatct ctttaacaac aaactgtgga gttaccattc ccctaaattc
     1321 attcttagaa atacttccaa gcaaagaaat attttgattc aattctggct ctttatcaaa
     1381 attaaaaaat aaagcttcta tggttttatt ttccttagtt aaaacaagct ttaagtgttt
     1441 ttcatcttta cctagaagtt ttttattttt tacacaaaga ttttctaaaa caaaaaaagg
     1501 tcgtggattt ttatgtccaa aaggttcaaa agattctaaa atttcaagca tttcaaaatc
     1561 aatttcgcta ggttctaaga ttcctaaaat ttcatctgta tccaaaaatt cactttcaga
     1621 aatttgcgaa cattcttttt tgattttatt tttaaattgt tcaaaatttt cagagtttaa
     1681 actgattcca gcagcacctt tatggccacc ataattgctt aatatagaat ttgtcttaga
     1741 aattaaagct aaaatatcaa tcttgccaac acttcttgcg ctgcctttta agtgttcttc
     1801 attttgagaa aatacaaaag caggtttatt aaaatgttta gctaaacgac ttgccacaat
     1861 ccctaaaaca ccttcatgcc aatttaaacc cgataccaca atacaagaat cgttttcatc
     1921 gatttgattt aaactatctt caaaaagctg tttttcttca tctttacgac tttcattaaa
     1981 actaacaatt tgctctagat attctaaagc tttattaaaa tctttagtgt gtaaaaattc
     2041 ataagaaata cttgcatcat ccattcttcc agcactattt ataagcggag caattaaaaa
     2101 tcctatatta tcaagagcaa atttatcctt ttgataataa tgcttaatag cccgaaaagc
     2161 agccctttta gatttgttaa tatgatctat accacgcctt actaaagcac gatttaaatc
     2221 tctaagttcc atcatatctg caacaattgc aatcgccaaa agttctaaaa atttacacat
     2281 gtcatattta agcttgcaca cctcttttaa agccgctatc aaataccatg cgacttgagc
     2341 tccacaaatt tcaatttctg gaaaatcaca atctttttgc tttggattga taatggcaaa
     2401 agcatcaggt aaaatatctt gaggcatatg atgatcagtg ataatcaaat ctatattttt
     2461 ttctttacag agtttggctg cttcaagagc agctattcca ttatctactg ttattattaa
     2521 atttacatca agttcgttga tgatctcagc atttaatcca tatccatctt taaaacgatt
     2581 cggaattctt ataatataat caaaacctat atcatcgaaa aattctgcca taataacaca
     2641 agaaatgatt ccatcaacat cataatctcc tactatagcg actttctcat ttttttctac
     2701 agcttctttg atgcgattag ctgctttata tgcatccttt aaacagcatg gcaaaggcag
     2761 atcacaaagt ttggtatgca aatctttttc aaagcgtgaa gccaaaattt ttttaatttc
     2821 atttttatta attatcttca tagtttatag ctgccttgat aaaactgcaa atcacaggat
     2881 taacatgctc aagtcttgat gtaaattctg gatgaaactg cacagccaag aaaaaaggat
     2941 gacagttaag ctcaactgct tcaatcaatc ctttgctttc accacttaca atcaaaccgt
     3001 atttttcaaa atctgctcta tattttggat ttgcttcata gcgatgacga tggcgttctt
     3061 ttacactctt tacttcatta taaaccttag ccaaaaggga tttttccttg atatcacatt
     3121 tataagcccc taaacgcata gttccaccta aaggagtttt tgcagtacga atttgttttt
     3181 ctccatttgt atccataaat tcatcaatca aataaaccac aggattttgg catttttcat
     3241 taaattcact tgaatttaca tctttaagtt ttaatacatt tctagcaaat tccaccaaag
     3301 caagctgcat acctaaacaa attcctaaaa aaggaatttt attttctctt gcgtattgaa
     3361 tggcttttat cttaccttct acaccacgat atccaaatcc cccagcaacc aaaattccac
     3421 tcacatcttt aaatacttca gaactttcca tattttcaag tttttcacta tctacccatt
     3481 ttaactccac tttagtatct agggctgcac ctgcatgtat aatagcttca gtaaggcttt
     3541 tataactttc ttttaaatcc acatatttgc ctacaaaagc gattttaact tcattgcttg
     3601 gagctataac tctttttacc aaagagtccc aattttccat attaggtttt aaatttttca
     3661 aatccaaaat ttcagcaata gggcttaaaa tatcttgctt taaaaaatta agtggaattt
     3721 gataaatact agccgcatca acactttcta tcacgcaatt tttttccacc ccgcaagaaa
     3781 tagcaatttt atcttttaaa tctctatcaa gagctttttc actacgacaa ataatcatat
     3841 caggactaat gcctatgcgc cttaactcgc ctacactatg ttgagttggc tttgttttta
     3901 attcccctgc agccttaata aaaggtacta gagtaagatg aatattcata gcattatttt
     3961 tacccacttc caaacgcaaa gcacgaatag cttctaaaaa aggcaagcct tctatatccc
     4021 caacagttcc gcctatttca acgataagta tatctttgcc ttctcctgct tttttaatgc
     4081 gatctttgat ttctcctact atatgaggga taacttgaat ggttttgcca agatattctc
     4141 cacgcctttc tttttcaatc acactttgat aaacccgtcc tgtagtgaag ttattatctt
     4201 gagataaact ctcatccaaa aaacgctcat aatgccccaa atcaagatcc gtttctgctc
     4261 catcatcagt tacaaaaacc tctccatgct caaaaggact catagtgcct ggatcaacat
     4321 tgatataagg atcagctttt aaaatactca ctttaagccc tgaatttttt aaaagtgttg
     4381 cgatagaagc agcggctatc cctttaccca aagaacttaa aactccacct gttacaaaaa
     4441 tatattttgt ttgtttcatt gacaataagc cttatttttt tatctaatta tagcttgata
     4501 aaacttttta tttcattaga attttaagta aaaaatgcaa gaattacaaa aaatattttt
     4561 atcaaaaaag gaataagcat gcaaatcact ttactttttc acactccatt atctgtttgt
     4621 tctcatgcaa caagaacttg ttggcaaagc tttgaaaaag gcgattgcgg tggcgaaaaa
     4681 gataaagaac ttatcgatcg cgtgggtaat aaattcaaac acgcttcaac cttagaacat
     4741 ctaaactata ctttttatat acaaggaatt tcaagagctt gcttacaaga agttgcaaga
     4801 caccgtcaca ctagtcctag tgtaaaaagc acgcgttata ccttaaaaga acttcgcaat
     4861 gaagctgaat ttaaaatagg agattttgaa aatgcaagcc gttatcttgt gctttgtggt
     4921 aatgaagagg ttgataacgc aagcattaaa gccttagaaa atttacgcac tattttacaa
     4981 aaaagcatta gtctagatat agccaaatac tgcttaccag aaagctataa aaccgaactt
     5041 acactaacga ttaatgcaag aagtttacaa aattttatat ctttgcgtag ttcaaaatca
     5101 gctctttggg agattagaaa tttagcaaat gctttatttg aagccttacc acaagaacac
     5161 aaatttatat ttgaacattg cctacataaa gatatagaat aaatcatact aattttatct
     5221 tatttaaaat atttttatgc taccatttat aaaatcaagc tttatgcaag tatattttca
     5281 tataccttgt gcttgattat agtttcttat aaggactttt tatggataaa caattttttc
     5341 aagattttct aatgctttca caagctcata ctatagctac tcttgctata ctttgtgttg
     5401 ttttttacgc attaaaaaaa atgcgggata taaaaatcaa tttttctctt cgcatgctat
     5461 ttgcgctttt aatgggtttg gggtttggtt ttgctttgca atatttggca aattttccag
     5521 atgctgaaga agcaagcaat attctttggt atagtgaaac aaaacattgg tttgcatttg
     5581 taagttctgt ttttgtagct tttataaaaa tgctagttgt tcctcttgta agcatttgca
     5641 ttataaaagt aattatagaa attgataaaa atatcaaaat atcttccttg cttggaataa
     5701 gtcttttttg gatactcttt agcacagcca tagctgcaac cttgggtata tttttaggtt
     5761 atagttttga tttaggaagt aattttgcta tatatgaagg agataaacaa attcgcgaaa
     5821 ttcaaacttt ttcaaatatt atactagggc taatacctag caacatcatt acagctatta
     5881 ataaagaaaa tattatagct attgtcattt tttctttttt tataggaatt agtgctaaaa
     5941 aaatttctaa aaaagaagag tatgaacaag cctttaaaag ttttcataat tttatcctaa
     6001 ccttttataa tattatgatg aacatgactg ctacagtcat tagatttatg ccttatgctg
     6061 tagtttgtat gatggctaat gtgcttttaa gcaatggttt tgaagctatc aaaacagctg
     6121 gactttttat aatgcttatt tatatagcca tgtttataat gtttggggtg cattttttac
     6181 ttcttgcttc acaagggtta aaccctataa aatatgcaaa aaaagccttt cctgtatggt
     6241 tatttgcatt tagctcaaga tcttctttag gcactttgcc tatgaccact tcaactttgc
     6301 aaaataaatt tggagttaat tcagctatag ctaattttgt agcatctata ggtacaacaa
     6361 caggacttaa tggttgtgcg ggatattttc cagctttagc ggcagttttt gtagcttttg
     6421 ctacacatac acatattgat tttacatttg ctttaatgat agttttggta gctgttattg
     6481 gatccttggg tatagctggg gtacctggaa gtgcaactat ggcagcttct attatgctag
     6541 cagggattgg atttggtaat aattttgtca tgctaagttt gattttagcc atagatccta
     6601 ttatagatat ggcaagaaca gcaagcaatg tctcaggagc tatgacttcg gcactttgta
     6661 ctgcaaaaaa tctaaaagct ctagataaag aaatttacaa ttcttaatct tttaaaaccc
     6721 aatgcttttc attgggtttt agtatttatt ggcaaccttc acattctatg ctacgatctg
     6781 caacattgac tttttcacta tcagggcttt cgcttcttag ataataagta gattttactc
     6841 cgagctccca agcgagttga taaatttcat ttaaatatcc cccacttgct ttatcaagtg
     6901 ataaaaagat atttaaactc tgcccttgat cgatccattt accacgcaca gcagcagcct
     6961 ttacaagaat tttttgatca agttcatagg ctggagtata gtattgccaa gtatcaaggc
     7021 ttaaatttgg cacaacaaca ggtatcatac cacttaaatt ttgttcaaac cactttcttt
     7081 tgtaaacagg ttctatagtc tgcgtagtac ccaccaagat agaaatagaa gaagtaggcg
     7141 caatggccat caaataacca tttctcatac catctttttt aactttttct ctaagtttaa
     7201 cccagtcgca ttcactttga tcaaataagc cttctcttaa agttaaagct ttagccttag
     7261 gacttgctac atcaatagga aaaatcccct tgctccaatt tgatccttca aaatcttcat
     7321 aagaaccttt ttcaagagct aaatttgaac tcgcattaat agcctcaaag ctaatttgct
     7381 ccataatctc atcgatttta tttaaatgct catcgcttcc ccaatgaatc ttagcctcag
     7441 caagcatttg tgcctcgccc ataactccaa gacctatggc acgagatttt aaatttgtat
     7501 cttttacttt tctatgagga taaaaattta aatcaattac attatcaagc atacgaatag
     7561 ctgttggaac aacacgctct atatcttctt tagtatatac tttgctaaga tttatacttg
     7621 ctaaattaca aacggctgtt tttccatcat ttttatattt ttccactata taaactttat
     7681 taccttcaat actatctaaa gttgagattt ttttggctgg tttttcatat cccccatcga
     7741 tcacaacctt ttgctcttca tcaaaatgaa gctcatctcc attttcaaaa actactttaa
     7801 tttgataata atttggctcg gtattttgaa aaatttcagt acataaattt gaacttctaa
     7861 taattcctac atgagcattt ggatttgctc tgttggcact atctttaaaa cataaaaatg
     7921 gcaagcctgt ttcaaaataa tttagcaaaa ttttcttcca aagctcttta gcttctacga
     7981 tttctttggt aatgctttca tctttttcat attcttcata gcgtttttca aaagcttcac
     8041 catacaaatc acacaaatcc gctgtatctg caggatcaaa aagagtccat ttatcattag
     8101 ctcttactct cttcatgaaa agatcattga tccataaagc agggaaaagt tcatgagcac
     8161 ggcgtctttc ttcacctgaa tttttacgca aatcgataaa atcacttata tccatgtgcc
     8221 aaggttctat ataaacggct atagctcctt ttctggttcc tagttgatct actgccacag
     8281 caatatcgtt ggtaattttc aagaaaggta taatccctcc tgcggcattt ttatgcccat
     8341 ctatgcttcc acccatagca cgcactttag accaatccca acctatacca ccaccaaatt
     8401 tagaaagcaa agccatttct tggtaagaat caaaaatacc ttcaatatta tcaggggttg
     8461 atcctatata acaagaacta agctgatggc gcgttgttct tgcattagat aaagtcggag
     8521 ttgcaagcat gagttcaaat ttagaaataa gatcgtaaaa tttcttcgcc cattcttgag
     8581 gattaaattc attctgcgct aaaaacatcg caatggccat aaacatttgt tgaggaagtt
     8641 ctataggcat acctttacta tctttaatca agtatctatc atataaagtt ttaataccaa
     8701 gataagtaaa ttgcatatcg cgttcaggtt taatataagc atttaaatca tctaaatcat
     8761 atttttcttt aagaccaagt aaaattcttc cttctttttc acccttttga aaatactcac
     8821 gcaaatgatt atagcgattc ataccattaa cttttttata taaatcaaat aaaaaaagtc
     8881 tagctgcaac aaaggtccaa tttggacaat caatatctat cttatctact gcagttttaa
     8941 ttaaagtttt ttgaatttct tcagttgaaa ttccatcacg aaattgaatc tttgcatcaa
     9001 gttcaagttc gcttaaattc acaccttcta aatcttttac agcatcagag gtgcattttt
     9061 tgatcttaga aacatccaat tcttctgtac gaccatttct tttaataact ttcattgcct
     9121 tccttgcttt ttatttaaat gttcttttaa aaattgcatc aacatttttt gtatagtagt
     9181 tataatcgaa acattttctt acatcctctt cgctcaaact ttttcttaaa tcttcatcgc
     9241 ttaaaagcgc taacaaaaac aaactttcat ttttttcatt gatagcagcc ttgccatttt
     9301 gcaaatctgc ccaaactttc atagcgtttc tttgaactat tttataagct tcttcacggc
     9361 taatgccttt aaatggaagt tctaaaagca ccctccctga aaatacaagc ccgcctgtaa
     9421 gatttaaatt tttcatcata ttttcaggat aaaccaaaag cttatcaatc aaatttgtaa
     9481 gacgcataag cataaaatca gccgtgataa aagcatcagg caaaataaat ctttcaacac
     9541 tagaatgaga tatatctctt tcatgccaaa gtgcaacatt ttccaaagct ggagttacaa
     9601 aagatctaag cacacgacaa agtcctgtga tattttcact taaaacagga tttcttttat
     9661 gtggcatagc tgaacttcct ttttgtccta cactaaaata ctcctcagcc tcataaactt
     9721 cagttctttg aaaatgtctt atggctacag cgatttgctc acaacttgaa gctaaaatcg
     9781 caatagcaga aataacctga gcataacgat ctctttggat cacttgattt gaaacaggag
     9841 cggccttaag acctaaattt ttacaaactt cttcttcaaa ttctaaagga gcatgagcaa
     9901 aatttcccat tgcaccgctg atttttccat agcttatcac ttcttttgca tgttctaaaa
     9961 gctcttttgc atgcgaaatt tcatcatacc aaatagctaa caccaaacca aaagtaatag
    10021 gttctccatg aattccatga cttcttccta ccattaaggt gtttttatgc tccaaagcac
    10081 gctttttgat cgcttctaaa agcaaagaaa catcttctaa aataagctcc aaactctctt
    10141 ttatctgtaa agcaacagct gtatctatac aatcagaact tgtcattgca taatgcacaa
    10201 aacgactctc ttctcccaaa ctttcactta cacttgtaag aaaagctata acatcatgtt
    10261 ttgtggtttt ttctatttcg tctattcttg caatatcaaa ttttgcattt ttaagaattt
    10321 tttcgcagtc tgtgtcatca atgagaccga gtttgttcca agcttttaca gcggctaatt
    10381 ctacttttaa ccacgcatcg tattttgctt gcatgtccca ttttttagcc atgatttctc
    10441 tgctatatct ttcaaccatc tttgaaacct ttttagctat aattttatat tttaaaaaac
    10501 agaaattata tcaaattatc ctaagaaagt tattaaatgg cctacataaa aataaaactc
    10561 tcaaacaatg gaaaaaaggc gtttcaagtc cttatggaaa atttaaaaat tagcataaat
    10621 gaagcacaaa aactcataga caaaaaaaga cttttttgtg atggaatttt agtagaagaa
    10681 aagaataaaa ttttaaatgg tttagtagag cttatagtct atgaaaacaa tcccaaagga
    10741 gtagaaattg tctttgaaaa tgaagacttt gccatacttg aaaaagaaag tgggatctta
    10801 agccatccaa atggtagaca ttgcaaatac agtcttagtg atgaaatttg gcatctttgg
    10861 ggaaaagaag cttgcgtagc acacaggctc gataaagaaa cgagcggact tatacttata
    10921 gccaaaaata aaaaagctca aattgatctt aaaagcttgt ttgaaaaaaa actagttcaa
    10981 aaagaatacc ttgctctagc tcatggaaaa atagaagaaa attttatagt tgataaagct
    11041 ataaatttaa ctaaaaacta cgatgatgta aaaacaagaa tgcaaatttg caaagaagga
    11101 aaacaagcta tcactgaatt tgaaatttta gaatactttc ctaaaatcaa cgctactctt
    11161 ttactttgta aacccttaac aggcagacaa catcaaataa gagtgcattt acactataaa
    11221 aatcatacca ttttaggcga tccactttat gggcttagca aacaacaaat cgaaagtatt
    11281 ttagatgaaa aattaaatcc taaagaacgc ttaaaactta caggtgcctt gcgtttgtgt
    11341 ttgcattctt atcgtttgaa atttcaatat aaaaatcaaa attttgatat caactcaaaa
    11401 ataaacataa aagaaatttt caacaattcc ataaaataaa atgatgtttc actacgctac
    11461 aatcaatcac ttttttacca aattttaaaa caaaaaaata attcttgcta aaactttaag
    11521 tataattaaa taaaaaagcg agattttcca aatgaaattt gttaatttta tacagggtca
    11581 aaaacccaat ctaggagtac taaattctag tggaaaaatt gtaagttttg atgatcttgg
    11641 cattgaaact aacgatatga atgaatttat tatccatttt gataaattta aacacaaact
    11701 tacagacttg gattctaaaa tagcctatga aattccacaa gaaaattatc tagcccctat
    11761 tatagaacct cgtcaagata ttatatgtct tgggattaat tttttagatc atgccaaaga
    11821 atctgccaaa tttaagggtg aaaaatttga agaaagagaa tatcctgtat attttggaaa
    11881 acgctgcaat caagctacgg caccttttgg cgatatacct ttacatgcag atgtaacttc
    11941 tcagcttgat tatgaatgtg agcttgcatt tattttaagt aaagatgctt ataaaatcaa
    12001 agctaaagat gcaaaagatt atatctttgg ctatactatt atcaatgaaa tttcagctcg
    12061 cgaacttcaa aaacgccaca aacaattcta ccgagcaaaa agtcttgaag gtagcactat
    12121 aatgggacct tatatcacaa gcgtagatga aatttcttat cctcctaaac tccaacttca
    12181 aagctatgtc aatgatgaac tacgccaaaa ctctaacact caattgttta tttttgatat
    12241 tgcttatgtc ttagaagaac ttagcgcagg catgctttta aaagctggaa gtattatatc
    12301 tatgggaact cctagtggag taggtatggg gttaaatcca cctacttttt taaaatcagg
    12361 agataaagta cgttgcgtca tagaaaattt aggagaactt tgcaataaaa taaaaaatat
    12421 caattattaa acaatttact aaaattacac tataatggca ttttaaaaac ttaaattaag
    12481 gcagaaattt accatgaaaa aaataataat gattttatgt ttatcttatg caaatatagt
    12541 ctttgcagta gatatgataa cccctattcc aaattccatc tcttatgata aagaaaaagc
    12601 taaacttgga aaaagtcttt atatggataa aagtttatcc aaagatggaa aagtttcgtg
    12661 caatacttgc cataggcttg atcaacacgg cgttgatgga cttgaatttt caataggagt
    12721 tgataatcaa ctcgataaac cctttaacac tcctacaacc tttaattctg tatttaattt
    12781 tgtgcaattt tggaatggta gagctaaaga tttagcagaa caagctacag tacctttttt
    12841 caatcctaaa gaaatggggc taagtcctga acttctttta caaaaagtta attcaaatga
    12901 aaattatgta aaaactttta aaaaacttta tggagaagtt acggtagaaa acatagccct
    12961 tgcagttgct gaatttgaaa aaaccttaat cacaccaaat tctccttttg atcgctatct
    13021 tagcggggat caaaatgcta tttcaactca agctaaaaaa ggttacgaag attttaaagc
    13081 taatggctgc atctcttgcc atcaaggtca aaatataggt gggaatatgt ttcaaaaaat
    13141 cggtattttt gaagaatacc caaaccaaga agatttaggg cgctatgaaa tcacaaaaag
    13201 agaagctgat aaaatggtat ttaaagttcc tagtcttaga aatatagcca aaaccgcacc
    13261 ttattttcat gatggatcta tacctacttt agatgcttgt gttcagttta tggcttacta
    13321 tcaactagga aaatttttag atcaagaaac agttgacaat atagttgcat tcttagaaag
    13381 cttaacagga gaatatcatg acaaataaaa aaagttcatt tttgataaaa tttattattt
    13441 tatctacact agttttagct ttcattcttg ttttgttagg tattattttt aataactatt
    13501 cttcatctaa agataataaa gaattgataa acatagttca acaactagaa atttcagatg
    13561 aaaaaatcaa ttctgttttt caaaatagtt ttaattttat caactacgat ccaagtgttc
    13621 aagcaataaa aaaaatgcaa gaaaacttta caaaacttaa aacttttggg attgacataa
    13681 acaaagcaga agaaattttt aatgccaaac taatccagct taattatttt aaatccgcaa
    13741 attccatagc agtaaattca aaactttatt tatttgaact agctaaaaat tattttgaag
    13801 aattggaaca aaaccatgaa acaaataaaa acaactataa aacaatgagt tctatgttaa
    13861 gcgttctttc aactgaaaat attttacaaa aaacaacact aaatcaactc aacaatctta
    13921 tgaaagaaat caaaaatgat acaaaaagtg aaaatttaca acttttttta aaacactata
    13981 acatgattgt aaagcaaatt tctattatgc aagataattc ttctatttat gagaataatt
    14041 ctctcatgaa agagttaaaa caacttaaca cttttaccca aaatactata gaacaatcta
    14101 atttatttaa attttatatc gctttagcag tatttggaat tactcttgta ttatttgtat
    14161 tttttatttt attaacacta aaaaaagtca tcatgccaat tcatacttta gaaaaactaa
    14221 gcgctaattt agctagcaaa gaagccaatc tacactctcg tttaaatata gatccaaaaa
    14281 gtgagcttgg acaaagtgct caatatatta attcatttat ttccaccgtt caaaactcaa
    14341 tcatagaagc catagaaaat gctaaatcaa gtcatcaaaa ttcacaaaaa ctcaaaaaca
    14401 actctatgat gcttgaaaac agctctaatt cgcaacatga acaaattcaa ggagttaaag
    14461 aaatcactca tgttttagat gatcatatca atcttgcggg aaatttagca caagaaagta
    14521 tagaaaatat gcaagatatg cacatactaa tggataaagt agaacttact ctatctgaac
    14581 ttgtaaattt aataaatgaa aacaatgaaa aagaacaaaa tatagtagcc aatatggaca
    14641 atctaaccca aagtgcggat aatattatag aaatcacaaa ctccattaaa gacatagctg
    14701 atcaaactaa tttacttgcc ctaaatgcag ctatcgaagc tgcaagagca ggcgaacatg
    14761 ggcgtggatt tgctgttgta gccgatgaag ttggacagct tgctgataaa acaagtaaat
    14821 ctcttttaaa catcaatgct actgttaata ctatagtcca acaaatcaat gacaacaaag
    14881 ccttaatgga tcttatccat gattctatga aagaaacctc ttcaaaaacc aatgatttac
    14941 aacaagaact tgtaaattct atgcataaat tggaaagctc tatagaatca acccaaacca
    15001 tgaaagataa aagcatggaa gtaaaagata aaatgcttat cttaggaaca aatatagata
    15061 aagttaacga acttgcaaat tctgttaaag atttatcatg tgaaatcaat aatatctctc
    15121 aaaatgttct aaatggtgcc tctaaactct ccgaaaaatt aagtagcttt cagtaacttt
    15181 tttcacgtta atttaactta acgtgaaatt tcaataaaaa ttttattttt aatttatgtt
    15241 tttcaagtaa aattagcagt ttttatttca aaggagatac tatggagttt cttgaacttt
    15301 tattagtttt aatcgccttg atactgatta tcaaaaaacc agaaaaagaa aatttggctt
    15361 ttggtttggt aatggtagct tggcttttaa tggttttttt ctatgttggc cacaaaacag
    15421 gcgcactatt aacaataatg aatctgtaag gaagggctaa atgaacgaaa tcaataaaac
    15481 aaaaaatttc tacacactaa tgtgtttagc aggctttttg attatactct tgcctgtagg
    15541 tattgcaaat ttgatatttg gttatatgtt gggcgatagt ccttgcacgc tttgctgggg
    15601 acaaagagaa gcaatgatct ttatcggtgt aatggcgctt ttcattgttc gttatggtat
    15661 gaaaggtaaa taccttgctg ctcttttaat catgacagca gtagggcttt atcaatcttt
    15721 tgctcactat ggtaatcacg ctcatagaga tttagatcaa ggttttggtt tagcagtttt
    15781 tggtatccat acttattttt gggctgaagt agtattttgg gctgttgtat tgctcttagg
    15841 tgtgattttt gcttttgctc ctaaatttaa tgcttttgaa gctgaactaa atggagaaaa
    15901 gtttagaaaa tatactaaat ttagctttgc agcagtttta atcagtgcta tcatcgtagc
    15961 atcaaatgtt ttccaagcct ttattagcac aggtattcct ccttatgtag gacaaggcga
    16021 tcctgtaaga tttagtttaa atccaaaata catcatttgg agtaaagaag gttggaatgg
    16081 tttatggcaa aatatttctt tcttaggaaa acgcgatgtt aaagctcctg attatgcttt
    16141 tgcacctgca agtgaaaaac ttggcataaa atttgataat gatatcaaca atgctccatt
    16201 tgcaaaaatc aatgatgagc ttaaaatcac aaatgaacaa accataaatt ttgacaaagc
    16261 catcaatact cttgattata tcaataacga atttgtagca agttctaaat gggatgtagc
    16321 tttcttagat aataatttta gcgttaaaga aggttttgaa cttgatcctt atttttcagc
    16381 ttctatcgat ccaatcatcg gtatcatacc ttatatgaac gataaattca ttcttatggg
    16441 ctcaaacaaa tctttcttaa gatttgcaaa aaatcctaat gcaagtgaag aagatatcgc
    16501 taaacaatac gctgactttg taaaaggcaa tgataaattt aaaggtcaag gcgaaagttt
    16561 aggtcgcgga agacttgata ccgtaagagc aaaatttaac catgtagcaa gtatgactac
    16621 agatggaaat tatctttatc ttgcaactgt tccaaacaac aaagacgcta aaacttttgt
    16681 aatctctaaa gtttctttaa aagatcgtgt tctttcagga gaatttactc caaaagcaaa
    16741 tcttaaagaa ggtaaaactt taggcgatct ttatgtaact tctatgactt ttaaagatgg
    16801 ggaaatttat gcacttagca aaaatcacaa tgtgattgcc gtaattgatc cagtcaaaga
    16861 agaagtagtg aaaactatcg ctttcccaag ctctatcact aatgctagaa gcattttctt
    16921 taaagatgga aaaatcaata ttctttctta tcaagatgga gcaaacaagc tttatacttt
    16981 aaactaagct ttaagtccta gtgaaaacta ggacttatat ttaatcttat ctttaaatcc
    17041 tgctttttca aaacctctta aacgaagcaa acaactatcg cactccccac aagcttcatc
    17101 ttcactctca taacaagacc aagtaagttc taaaggtaca ttttctttta aggctagttc
    17161 tacaatttta gctttgttta gtctaacaag cggagttttt atacaaactt tgaaattctt
    17221 actcgtacct tcattgataa attcttgtgc cttttgtata aactcatcag tacagtcagg
    17281 ataaccactg ccatcttctt ctaccacccc tataaaaata ctctcacaat tttccttttc
    17341 agccaaagat cctgctatac ttaagaaaat tccattgcga aaaggcacat aagtgatagg
    17401 tggagtatcg cttgtacaaa gctcattttt agggatgtct atacttttat cggttaaggc
    17461 attgccccct atatctttga taaaactcac atctaaaata taagattttt ctacttttaa
    17521 agccttgcaa atttgcttaa aacattcttt ttctttttct tgagtgcgtt gttcatagtc
    17581 aaaatgcaaa gcgatgattt cataaccttc ttttttggcc agataagcac acaaagtact
    17641 atccataccg ccacttatga tacaaagtgc ttttttactc atttttatcc ttaaatttgc
    17701 tataatttca caattttaac gaaaattttt aaatttaaat tgcaaaaagg caaaagcatg
    17761 ataaacataa aactcataga acacattttt aaagccgctt ctatcagtcg ttggaatgat
    17821 tatccaagaa tggcaaattt ggttgaactt gacaaacaag ctcataaatt catcatcgca
    17881 tattttatcg ctaaaatgga aaaagatgtg gatatgagag tgattataga agggggaatt
    17941 tttgagtttt taagtcgtgt tgtggtaact gatatacgcc ctgatgtgta tcatgaaatc
    18001 gtgcgtcaaa aaaaagctga agttaatgct tgggttttaa gcaaaatcga acctatgata
    18061 gaagatatag aagatgggga atttctaaag cgttttgaag cgtatttaaa tggtaatgct
    18121 tatgctaaag aaagacttat cttaaaagca gcttcatatt ttgctacaag atgggaattt
    18181 aacatagttt atcaaacctc agctttttta aatgatattg atgagattaa aaacaaagtt
    18241 gaagaagaat tagaagatta ctatgagctt ataggagcta gaaaaatcgc tttaaatcaa
    18301 aaaatagcca aaattattga tcttagcgga agacttcgct ttcaaaaacg ttgggctcaa
    18361 actccacgca taccagaaac cgcggtttta ggacatatgc ttgtggtggc gattttagga
    18421 tatttttact cactaaaaat caaggcttgc gataaaagac ttgagaataa tttttattgt
    18481 gctttgtttc atgatttgcc agagtcttta acacgtgata ttatcagccc tgtaaaatac
    18541 ggcattgatg gacttcatga tatcataaat gattatgaaa tgaaacttat taatgaaaga
    18601 attttaccct ttgtacctga gggtttaagg ggtgagtttt cttatatttt aggcattaga
    18661 gaaggtagaa acggtgagtc aaattttgta aaaaatgagt ttgaaaatcg cacttataaa
    18721 aatgctaaaa tcgagctttg cagcggaagt ttaagctctt ttaatgaaaa tgaatttggt
    18781 gctatagatg gtaaggcgct taaatactgc gataaaattg ctgcttatat agaagcagga
    18841 cttagtataa gttatggtgt aaagtctaaa gaacttgaaa gtggtttttt aggaatgcat
    18901 gagtttttta aagaaaatcc taccatagat ggggtgaatt tttttgaaat ttgtgaaagt
    18961 ttaagagagt attttaaaat ttaaataaga tttttatact actattttca atatgtttta
    19021 aataaaaata ttataaattc aaattttatt ttgtataaaa tataaaggag ttattatgaa
    19081 aaaatacttt caaaagcgct atactttagc cttttttata ggtatattag cgggtatttt
    19141 cggagctatt gttaaatggg gttgggaagt accttttcct ccaagaaatc ccaatgtttt
    19201 ttggccagca gatgctttag aacgtgttac tccacctaaa atttttctag aacaactagg
    19261 cttacctact gattggattt atatgttttc aggtatgcaa atgcctttgt caatttttat
    19321 agtacatgtc ggtttttcta ttatttttgg agtggcttat tgtatgatag cggaaaaatg
    19381 gcaccgtatt actatgtggc aaggtgcagt ttttggattt tttgtttatc tttttgccca
    19441 tgttattgta atgcctttaa ttgcagaagt tccaccactt tctgaaattc cttttgatga
    19501 acacctgtct gaaatttttg gccatattgt ttggctgtgg ggcatggaaa tagttcgtag
    19561 agatataaga aatcgtataa ccaaagaaat agaagaatga aaggaaacct ttcattccat
    19621 atctaaaacc gcacctttac tagcattgct aacaagtttt tgatacattc taagccatct
    19681 tgaagacacc tctttttgag gcaatgcaaa ttctttttta cgtttagcaa tttcttcttc
    19741 acttacattt gcatggatag tataagcatc tacatcaatt tctatttcat ctccatcttt
    19801 taaaagtcct ataagaccac cttcagctgc ttcaggggaa atatgaccaa cgcttaaacc
    19861 ccttgtagcc ccgctaaaac gaccatcggt gattaaagcc acatcagcac ctaaacccat
    19921 acccattaaa agtgaagtag gacttaacat ttcttgcata ccaggacccc cttttggacc
    19981 ttcatagcgt attacacaaa catttccttt ttgcaccttg cctttgataa tgccttttat
    20041 agcttcatct tgagagttaa aacaaacagc tttgccttta aattttcttt ctccgattat
    20101 tcctgcggtt tttataacgc aaccttgctc ggctaaattt ccaaacaaaa tggcaagccc
    20161 acctactttt gagtaagcat tatctacttt acgaatgata ttttcatctt tgattttggc
    20221 attttttaag cgttctttga gactttctcc tgtaatggtc agtgcatcaa gttctaaaat
    20281 atgtccttgt ctgcttgaaa tttcagccat aactgcactc acaccgcctg ctttgtggat
    20341 atcatccata taaacactat ttagcgatgg ggctattttt gctatgtgtg caactttgct
    20401 tgagatgaaa tttaaatctt taatgtctag tgctacccct gcttcacgcg aaatggcaag
    20461 catgtgtaaa actgtattgc tacttccacc cattgccata tctactacca tagcattacg
    20521 cacagctttt tgagtgatga tattgcgaat tttaaaacgt tcatctaggg cgatttcaca
    20581 aatacgacgc gctgcttttc ttaaaagctc ttctctttct ttgcttaaag ctaagatggt
    20641 tccattacct tctagtgcta tacccatagc ttcgcataag gtattcatag aatttgctgt
    20701 aaacattccc gagcaagatc caccacttgg acaggctgaa cattctatat ctttaaattc
    20761 ttcttcgcta atttttttgg cttcataagc ccctacagct tcaaaaacag agctaagact
    20821 aatcttttct ccttttttag ttacccctga agccataggc ccaccactta caaaaatggt
    20881 tggaacattt actcttaaag ctcccattaa cataccagga gtgattttat cgcagtttgg
    20941 aacacagatt aaagcatcaa gttgatgagc attcatcact gtttcaatgg aatttgcgat
    21001 gatttcacga cttggtaaag aataaagcat accttcatgt cccatagcta taccatcatc
    21061 tacacctatg gtattaaact caaaaggcac acaaccattt ttgcatatct catctttaat
    21121 gattttagca taattattta aaaaataatg tcctgggatt atatctatat agctatttgc
    21181 tacacctata aaaggtttgt caaaatcttc atctttcaaa ccacaagcac gaagtaaaga
    21241 acgattaggt gcttttaaat gtcctttttt tatcgcatcg cttctcattg taactcctga
    21301 taataatttt ttaaaattat atttagcaaa gcttaatttt tgtgaaattt attttgatat
    21361 acattttcat aaatgataaa aattattaat tgacaaaaat atttttttat aatacaatgc
    21421 tttttgataa tcaaaaaagg agtcaaaatg agacaatatg aaacctataa atgccaaaaa
    21481 tgtggtaatg aagtagaagt tcaaaatgta ggtggaggta agcttagttg ttgtggtgaa
    21541 gaaatgaaat gtatcactac agatttaact gcagtaaatt tgatgaaagc ttttgcgggc
    21601 gaatctatgg cgagaaacaa atacgattta tttgctgatg tagctgaaga agaaggttgg
    21661 catgcggttg ctagacattt tagagaagca gctgaaaatg aaaaatggca tgcaagagca
    21721 gaatttaaag cttatcatga aatcgttgat ggaaaacctt tagaagtaac tacaaaaaac
    21781 ctagtaagtg ctgcagaagg tgaaaactat gagcacacaa ctatgtatcc aaattttgca
    21841 aaaattgctg aagatgaagg taaaaaggct atagcaagat tatttacagc tattggtaaa
    21901 gtagaaatcg aacacgaaag agaatatcta gcgcttaaaa aaatgctcga agaagaagaa
    21961 ttttttaata gtgaagtaga agaattatgg gtttgtgaag tatgcggaca tatacatcgt
    22021 ggcaaaaaag ctccagcagc ctgtccttta tgtaaagcac caaaagagta ttttaaacgc
    22081 gaatttttgg gttaagttaa gaaattctta tcctttttaa gataatatta taattatttt
    22141 ttaataaaag gataagaaaa tgaaaaaatt actattttta ttttttgctt taacggcttt
    22201 tctctttggt gctgtaaata tcaacactgc aacactaaaa gaattaaaaa gtttaaatgg
    22261 tattggcgaa gctaaggcta aagcgatttt agaataccgc aaagaagcaa attttacaag
    22321 tattgatgat cttaaaaaag ttaaaggcat aggtgataag ctttttgaaa aaatcaaaaa
    22381 tgatatcaca atagaataaa agggcatttt tgcccttctt tttagaaaaa tttgaaaact
    22441 ttatttgaca caaaagaact tttaaacgaa tttgatataa atttaatcgg tattgatgaa
    22501 gcaggacgcg gtgctttagc aggtcctatg atgatggcag cttgcaaact gaacaaacaa
    22561 cttgatgggt tgtgtgattc taaaaaacta agcgaaaaaa aacgcgaaga actttatgaa
    22621 atcatcatca aaaattcaaa ctatctcata cttgcttttt cttcagaaca aatcgacgca
    22681 ctaggcttaa gcacttgttt aaaaaaggct taaaacttat aaaaaagcat tttaaaacag
    22741 aaaataactt cttatatgat ggaaacacca acctaggtat aaacgggata aaaacacaaa
    22801 tcaaagccga tgctagcatt ttgcaagtaa gtgcagctag catactcgca aaagttagta
    22861 aagatagggt gatgaatttc ttagctaaag actttccttg ttatgaattt gaaaaaaaca
    22921 aagcctatgg cacaaaagct cataaagaat ttatagctaa atttggaatt tgcaaactcc
    22981 accgaaaaag ttttaaactt ttatgattat tttgctaaat tttgatgcaa actcaaagca
    23041 cattctatac catcttttat agcccaaaca actaaagatt gtccttttct agcatctcca
    23101 caagcaaaga tttttttatg agtggtttgg aaattttctg tgcttatgtt gtttttctca
    23161 tctaatttca ctccaaaatt tttagcgata gcttcttcgc acccgctaaa acccatagct
    23221 aaaagcacta aatccgcttt ataagttttt ttagaatttg aaatttcaac atttatagct
    23281 ttgccttctt taaactcgcg ttttaaatca tttgcttcaa cacattctac atgagttttt
    23341 cctaaaaatt tctttgtcat tttttgatat tccctaggat ctttgccata tacagcaatg
    23401 gcttcttcta aaccataatc agtagtaaaa atgtcagctt ttaaaggcca aggattgttt
    23461 tggcttcttt gcaaaggtct ttttggactt ctttcaaaac gcactataga tttagcccct
    23521 tgtcttgtcg ccacagcaat acaatccaca cttgtatccc cgcttcctat aaccaagaca
    23581 tttttacctt tggccgtatc tgcacccttg cctgttttta acaaagtttt ggtattttgc
    23641 gttaaaaaat caagggcaaa ttcaacccct tttagctttc taccttctat atcaagatct
    23701 ataggcttac ttgctcctgt acaaagcacc aaagcatcaa attcttttag aagttttgaa
    23761 accttatctt tgctgtctat attttcattc actttaaact caatcccatt ttttttaagc
    23821 aaatccaccc gtctttgaac tatactttta tcaagcttca tatcagggat accatacatc
    23881 aaaagtccgc ctattttatc acttctttca aaaacactta ctttataacc tagtgaattt
    23941 aaagtattag cacaagcaag accagcaggc ccacttccta tgacagcgat ttttttgcca
    24001 ttgtattgct taggtttatt tactcttact aaattttctt taaaagcatt ttctataatg
    24061 gataattcat tatttttgat actcacactt gtgccattta tcgcacacac acaagaatcc
    24121 tcacaaggag cagggcaaac acgaccggta aattcaggaa aaggattggt aagatcaagt
    24181 ctttcataag cttctttcca taaagaacga taaataagat cgttccattc aggaatgaga
    24241 ttgtttaaag gacagcccac atcttttcct tcgctcatca cacccgtatg acaaaaggct
    24301 acaccacaat ccatacatcg tccgccctga atttcttgtt cttttttatc caaaggtata
    24361 gtaaattctt tgtaatttaa aaccctttcc ttaggagcaa tttttttaaa atccattctt
    24421 ttaaaatcta aaaaacctct tgcatttccc atttttactc cttatttttg tgtgattttc
    24481 aaaaatgctg ctaaatttgg atctttttca tttttacaaa gatcaagcat ttttaacatc
    24541 ttttcataat ctcttggcat gactttaaaa aagtcttttt tatcgaattt ttctaaaata
    24601 tctttagcct ttttagaatc tgtataagtg atatgttttt ctatcacagc ttttaattct
    24661 ttttcatcct tagcattaag atctttaata tccacaagct cggtatttac atgagcttca
    24721 ttgtgtcttc caaagatata aacaacgccc ccactcatac cagcagcgaa attcgcaccc
    24781 acatctccaa gaactacaac ttgtccacct gtcatatatt cacaaccatg cacgcctgtt
    24841 cctaaaacca cagccaaagc ccctgaattt cttacacaaa atctttcccc tgctatacca
    24901 tctaaataca cttcaccttt tgtagctccg tataaacaag catttcctgc gatgatattt
    24961 tcttcaggtg aaaaagtggc ttcatttgaa atttttgcta tgattttacc accacttaaa
    25021 cccttgccta aataatcatt gctatcgcct acaatctcaa gtttaatacc ctttaacaaa
    25081 aacgctccaa agctattgcc tgcattgcct atagctttga tatggatact atcttcatct
    25141 aaagcatctt ttccataagt ttttaaaatt tcgcttgaaa gcatagttgc aaaagtacga
    25201 ctttgatttc ctacttctaa agaaagtttg ataggctctt ttttctccac agcattttta
    25261 caaagtggta gtaaaattct ataatcaatc gttttttcaa gtttattgtc tttataatct
    25321 ttaaaatgca cagcggttct attataagta ggcaaggatt ttaaaatttt atctaaattt
    25381 agctttcctg ctttaccttg cacacttttt tggcggagtt tatccacgcg acctatcata
    25441 tcatctaggc gttcaaaacc aagccttgcc atgtattctc taagctcctc agctataaaa
    25501 tacatgaaat taatcacatc atctactttg cctttgaaac gatctctaag ttctgtatct
    25561 tgagtggcta taccaaaagg acaggtattt agatgacaaa ctctcatcat tgtacaacct
    25621 aaaacaatca aaggcgcggt tgcaaaacca aattcttcag ctcctaaaag tgctgctatg
    25681 gctaaatcac gcccattcat aagctttcca tcagtttcta atcttaccct atctctaagc
    25741 ttatttaaga tcaaagtttg atgcgtttca gctaagccta actcccaagg aattccagca
    25801 tgcggtatag aagttctagg acttgcaccc gtacctccat cataacctga aacaaggatt
    25861 aaattcgcgc ctgccttagc cacacctgca gcaaccgttc ctatgccatt ttcgcttaca
    25921 agttttactg aaattttagc gtctttgttc gcatgtttta aatcataaat gagttgagcc
    25981 aaatcctcaa tagaataaat atcatgatga ggaggtgggg aaataagcgt cacacctgca
    26041 gtagaatgtc tagccttagc tatccaagga tagactttaa agcccattaa ttgtccgccc
    26101 tcacctggtt ttgcaccttg agcgactttg atttgaattt cttttgcatg acttaagtag
    26161 tttaaatcca cgccaaaacg cccacttgct acttgcttaa tggctgagtt tttatccaca
    26221 ccctctttga tttcatagcg ttcttcatcc tcgccacctt cacctgaatt tgatttagca
    26281 cctattttat tcatagcctg tgctaaacac tcgtgtgctt ctttagaaat agaaccataa
    26341 ctcatcgctc ctgttctaaa gcgtttaact atactttcta cactttcaac cttatctata
    26401 ctgatagctt cactaaaatc aaattccatc aaagaacgca aattaacttg tttttcatct
    26461 actaaagccg agtatttttt aaagctttta tagtctttgt tgcgacaggc ttgctgaaga
    26521 ttaaaaatca caagtggatc gattaaatgt tcttctttag cacttctaaa accatgaatt
    26581 cctttagaat ctaaagcctt atgcgtatcg ttaaaagcat gtttatgtaa agcaatgagc
    26641 tctttttcaa aatcttctaa atccatacct tcaatgcgtg aagttgtaga agtgaagtat
    26701 ttatcaatca ctttagagct taagcccaga cattcaaaaa gtgcagagcc attataactt
    26761 tgcaaggtag aaactcccat tttagaagca attttgacta tgccacttga acttgccttg
    26821 atgaaatttt ctaccgcctt ttcataactt aaatttaaat ctttattgac aatgagtttt
    26881 tgtatgctct cataaaccaa ataaggatta ataacagtcg caccataacc taaaagacat
    26941 gcaaaatgat gaatttctct aggttcacca ctttcgataa taagacttgt gtgtgttctt
    27001 aaattttttc ttactagatg attatgcact ccagaaacag caagcaaagc ggggatataa
    27061 gcgttttttt catccactcc tttatcgctt aaaatgataa tagaaacacc ttttttaacc
    27121 tcatcttcta tcttaacgca aagctcatct aaagcctttt ctaaagtttt tttagaataa
    27181 tcataaagta tagaaaattc tttaacttga aatttattta aagccttaac ttcaaaaagt
    27241 tcttcattgc ttatcacagg caaggctatt tttacgcgtt ttgcattgtt ttcatcaggt
    27301 tttaataaat tgccttcgct tcctagataa atccttgtag aagtaacaat ctcttctctt
    27361 atggcatcaa gaggaggatt agttacttgt gcaaaaagtt gtttaaaata attatacaaa
    27421 ggttgataag ttttagaaag tatagccaaa ggagtatcta cacccatagc tgctatagct
    27481 tctttaccat tttgagccat agcagccaca ctcattttaa gctcatcata actccaacca
    27541 aaagcttttt ggagttttaa aacctcatct tcttttaaaa actgatgttt ataaactccg
    27601 cttttttgtt tttcaagttc aactaaattt ttaagccatt ttttataagg cttagcatta
    27661 gcataatgct ctttgatttc attatcagct ataaccctac ctcttgctgt atcaacaagt
    27721 aaaagttttc caggttctaa gcgttttttg gctttgatat ttttttcatc aagttttaaa
    27781 gcccctgttt cacttgaaag tatgagcata tcatcttttg taagataata ccttgaagga
    27841 cgaaaaccat ttctatccaa actcgccccc ataatcactc catcagtaaa aactatagca
    27901 gcaggcccat cccaaggctc catcaataaa gaatgatatt cataaaaagc acgctttttg
    27961 ctttccatat tttcattttt atgccaaggt tctggcacca tcatcataaa agcttcttct
    28021 aaagtacgac catttagagc taaaaattct aaagtattat caaacattgc agaatcactg
    28081 ctaggcttag ctatgatagg aaaaatttca tctaaatttt caaaatactc actttgcatc
    28141 aagccttctc tagctcttat gctatcaaca tttccgcgta tggtattaat ctctccatta
    28201 tgcaccatat aacggtttgg atgggctctt tcccaacttg ggaaggtatt agtcgaaaag
    28261 cgagaatgca ccaaagcgat ggctgatttc atattgacat ctttaaaatc aagataaaaa
    28321 tcgctcaatt gagttgaaag aagcattcct ttataaacta tggtgcgtga agaaaaactt
    28381 gaaaaataaa attttggcac attaatagct cttttttcta taaggcgacg cgtactataa
    28441 agcactcttt caaactcaag tcctgcactt attttacttg gttttttcac aaaggcttgt
    28501 aaaaaataag gcatagcttt taaagcactt gcacctatat cgctaggatt aaaaggcact
    28561 tctctaaaac ctaaaaattc aagtttttta tcctttaaac cttgtaaaaa tatctctttt
    28621 gcttcttctt ttgcatcagt attgggtgat aaaaacatct gtgctacggc ataatcaccc
    28681 tttttaggaa gttcaaaacc caattcttga gttttaaaaa aatcatgtgg aatttggatc
    28741 aaaatccccg ccccatcacc tgaattttct tcagctcctg caccacctcg gtgctcaaga
    28801 ttcatcaaaa tttctaaagc atcacaaata accttataag aagcaatacc gcgtatatta
    28861 gcaactgcag cgataccaca ggcatcgtgt tcgttctttg ggtgatataa acctatgctt
    28921 tgattatttt ctaggatatt ttctaaatcc attttgctct ccttataaga ctgatttaaa
    28981 ttttgttagc tttataagga ttatagcata cattttttta aaatcgatat aatttttatc
    29041 ttaaaaataa ataaattaaa aaatattttg atagatttgt aaaaattata aaaacatggc
    29101 gataatacta cctaaaatca ataatgggcc attataaaaa ataaaagttg gtatgcaagt
    29161 atctttaatg tgatcgtgtt gtttatcagc atttaatcct acagtagttc ccatggttgt
    29221 ttcactggct ggacttcctg catctcctaa agctcctgct actcctaaga taaatataat
    29281 aagtgctgta ctaaaaccaa gttccaaaca aataggacaa aaaagcgtag ctatgatagg
    29341 tatagttcca aaagaagtac ctatacccat agtgatgata agtcctatta aaagcatgaa
    29401 aaatactgct aaaaatttac tttgctccat ccaaggaacg actgaattta caagatctac
    29461 tactgatcca ctttctttta aaacttctcc atatcctgca gcaacaagta taacaaaagc
    29521 tataaaaccc atcattttaa gcccatcatc aaaaacttca ttgacttttg aaaattcaac
    29581 tccacccaaa ataaccatta aaacaaaacc caaaagccct gataaaggta aattcatagt
    29641 caaaatttgc aaaattaaag ttaaaacaag cccagctaaa acaccccatt ctttacgcgt
    29701 catttcaaga ttttctaaat ccactttagc aatttctact tcttgatact ctcttgactt
    29761 acgataaaac acaaaaagcg ctagaaaaag tcctgctatc atacaaatag cagcgaaata
    29821 catagtattt gtaacatcat ttaaagatac acttacatta tttgcattta aattatcttt
    29881 taaaagatct tgaaaagtaa gtccaaagcc tactggcaaa accatataag gcgtagtaag
    29941 tccaaaagtt aaagcacaag caaccgctct acgatcgatt ttaagtttat taaaaagact
    30001 taaaagaggt ggaatcaaca aaggtataaa agccacatga ataggaatta aattttgaga
    30061 aaaacaagaa atcaaagcta tagacaaaag caataaatat tttttatgag atataaaatg
    30121 acttactatc ttaatcaaat atgcagttaa atttgtcttt gaaatcgctg cggcaatggc
    30181 ccctaaaagt atatagctaa gagctgtttt taaattttct ttcattccgc ttataagtat
    30241 attcatagta tctacgagtt caagatgaga aaatacacct gcaacaagag ctgagatcaa
    30301 aagactcaaa agtacattaa aacgaaacaa acaaagtaaa gtcatcaaaa caacactgat
    30361 aatgatagga ttagtaagta aagtcaaaat tattccttaa ataattttaa aaatttaatt
    30421 gtagaaaaaa cttagttaaa atgtaataaa actcgaacat ataatgattt tattttaata
    30481 tgcaaaatta taaaaataat tatttttttt aatcaaaaag attaatataa tcaattattt
    30541 aaattcctaa aatttataat aaaataaaaa aatcataaaa atataaggat atttcaatga
    30601 aacaaaacaa tcaaaaagaa gatcgcagaa atttcttaaa aaatatagga tttggtttgc
    30661 ttggcatcag tgtattgtca aatttttctt ttgagaattt tttaggaagt aaggctttgg
    30721 caaaagaatt gcctgatttt aaaatagaag gtaaaaaaga tcttatctac catggcgaaa
    30781 aaccattaac agcagaaact gaaatttatg ctcttgattc tgattttacc aaacctgaaa
    30841 atttctttgt tagaaataat ggcttaccac caagcctaga aacgataaaa gaaagacttc
    30901 acaaaggttg gactttagaa atcgatggag aaagcattat caataaaaaa tcttacacca
    30961 tagaagattt aaaaaagaaa tttaaaacct atacttatgc cttaacagtt gaatgcggtg
    31021 gaaatggtag atccgaagtt atacctagca caaaaggaac tcaatggggt tatggtgcag
    31081 tagcttgcgg tagatggaca ggagtacgtt taaaagatat tttaaaagat tgtggcatca
    31141 aaaatgatgc ggtttatatc ggatattatg gcatagatac aaaattaaat ggtgaagaaa
    31201 cttcacctat tagtagagga gttcctattt ctaaagcttt acaagatgaa actctaatag
    31261 cttgggctta tgaaggcaaa gatattcctt tagtcaatgg ctatccactt agacttgttt
    31321 gtggtggtta ccctgcaagt acaagtggta aatggcttta taaaatttca gtaagaaata
    31381 aaattcatga tggtgaaaaa atggaaggtt cttataaagt tcctgtaaat ccggtaaaac
    31441 caggagattt taactataaa ggcgagatga aaatcataga atcaatgcct ataagatctg
    31501 taattactaa tatcaaaaat ggttctgaaa taaaagcaaa taaaaaattt gaagttagag
    31561 gtaaagcttg ggctggagaa cttgaagtta gtgaagttta tataagcaat gattatggcg
    31621 taacatggac taaagcaaag gtagaaaaac cattaaatag attagcatgg caaaaatgga
    31681 gtgctcaaat atcaatacca acaaaaggat attatgaaat ttgggcaaga gctatcgata
    31741 gtcaaggtaa cagtcaacct atggttttag cacagtggaa tccaggagga tatatcaata
    31801 atgcatgcca tagagttaat atttatggag tttaagtatg aaaaaaatta tattgatctt
    31861 agcattgttt ttaagtgcaa gttgggctca aaatcttgaa attaaccctg atacaggatt
    31921 gattatcgat cctgattcac ctttagtgga agcaaattgt ttagcttgtc atggatccaa
    31981 tctcattact aatatgcatg caagtagaaa agcttggtta gcagctataa gatggatgca
    32041 agatagtgaa ggactttggg aaatagaacc tgaagatgaa gaaaaaattt taaattatct
    32101 tgaaaaatat tatggagaaa aatacgatac aagaagaaga attcctctag ctatactctt
    32161 acaaaacaaa actcattgaa gaaatcattt cttcaatgat aaatttacac atccaaatgc
    32221 tttacatctt tagcgtgtgc ttggatataa tcgcgtcttg gttcaacctc atcacccata
    32281 aagagattaa aggtatcatt tgcactttgt gcatcttcaa tagtgatttt taaaagtctt
    32341 cttacacttg gatccattgt ggtttcccaa agttgctcag gattcatttc ccctaaacct
    32401 ttatagcgtt gtatagtagc acctttttta gcattggttt caacatcttc aagaacttct
    32461 aaaatatctt tatcaaattc caagcctcta tctttaatct tatcaaaaat ataatttgct
    32521 tcttcatata gtggatgagt gaaaagttct tcattgatca caagttcttc taagccattt
    32581 tgagtttgaa cgaaagctcg aatttcattt tcgttgatat aatgatttaa gatattgtgt
    32641 ccttgtgttt ctaaaaattg tttgattaca ctaaataatt cttcattatt tcctttaact
    32701 aaatttgaat tttctatcat atagcgtatc acagaaatca cattaaaacg cttttcaaga
    32761 tcttttaaaa tcgcacgata agctgcaacg atttttaaat aatcttttaa atcattcatt
    32821 cctatacctt catagtttaa accttctatt cctgtttcta tcaggtattc gctcaaagct
    32881 ttttcatcct ttaaataaat ttgcttttta gcttttttat aaagatataa aggtggttgt
    32941 gctagataaa tatgtccatt tgctacaagt tcattcataa aacggaagaa gaaagttaaa
    33001 agcaaggttt gtatatgtga tccatcaaca tccgcatctg tcatgatgat gattttatga
    33061 tatctaagtt ttgaaagatc aaaatcttca cctataccac agccaaaagc ggtaatcata
    33121 ttttgaattt gctcagattt taaaatttta tctaatcttg ctttttcaac atttaaaatt
    33181 ttaccacgca aaggcaatat agcttgaaaa gatctttctc taccttgttt tgcagaacct
    33241 cctgcagaat ccccttccac aagataaatt tcactttcac ttggatcttt actttgacaa
    33301 tcagctaatt tccctggtaa agttcctacg cttaaacttt cttttttacg cgttaattct
    33361 ctagcttttt tcgctgcttc tcttcctcta gctgccatta aggctttgtt cattatagct
    33421 ttagcttcga taggattttc ttcaaaatat ttagtcaaat attcaaaact tgcttttgaa
    33481 actataggac gcacataagt tgaaccaagt tttcctttgg tttgtccttc aaattgtggt
    33541 tcaggcacct ttacactcac aatagcgatc aaaccttcac gcacatcatc acccgtgatt
    33601 ttattatcct tttctctagc acttgcattt gcttctatat agttacttat cacacgagtt
    33661 aaacccattc taaaaccagc ttcgtgtgtt ccaccatctg gagttttgat attatttaca
    33721 aaagagagta aattttcact ataagtatca ttgtaaagca aagctacttc aacattcaca
    33781 tcttcttcat ctacgctaaa gaaaattgct ttagttaaag cttctttttt atttaagtct
    33841 gtaacaaact gagaaattcc accttcaaag tgaaaacttt catgtttgcc tacgcggtta
    33901 tctttaaaat ttatagtgat ttttggattt aagtatgcaa gttcacgaaa tcttttagcc
    33961 aaaatttcat aatcaaattc agtcacttca aaaatttgat catcaggcca aaattctata
    34021 gttgttcctg tttttttact ttttcctatc acaccaaatt cactgataac tttaccttct
    34081 gaaaattctt gacgataaat ttctccattt ctttcaactg tagctacaag ttttttagag
    34141 agtgcattta caaccgaaac cccaacaccg tgcaaaccgc ctgaaacttt ataagtatct
    34201 ttatcgaatt ttccccctgc atgtaggaca gttaaaacaa cagttaaagt tggcatattt
    34261 tcagttgggt gcatatcaac aggaatacca cgaccattat cactaactat acagcttcct
    34321 tcagtagtga tttctacatc tatagtatca caatgtcctg ccatagcttc atcgatagaa
    34381 ttatccacaa cttcataaat catatgatga agtccgccta tgtttgtatc tcctatatac
    34441 atacctgggc gttttctaac agcttctaag ccttttagga ctttaatatt actcgcaccg
    34501 taattttctt gcatattttt cctttatctt ttacttgttt tattacaaaa tcataggcat
    34561 gataatcatt gatagtcctt gggatttgac tataaatgct gaattaggtt catttacact
    34621 taaagtgaat ttttcttctt ctatagaagt taaaaaatca agtaaatatt tgatttttat
    34681 agtaagatta aattcttcac ttactcctgt ttgaatttca agttctgttt ttgcttccat
    34741 attgtctaaa cttatacctt caaagatgat tttatctttg ttaaaataaa gtctcatttt
    34801 ttcagttaca acgctgattt ttttaagact atctataaaa tcttcagttg aaaaactgag
    34861 ttcttgtttg aaagtttttg gtataacttt ttcataatct ggaaatttat cattgataag
    34921 ttttgtaaag aattcaaaat tttcattttt agcgataagc atattttgat cataaaaaat
    34981 ttctattttt tcatagaaaa gtttttgcat ttccatgata gcttttttag ggatactaaa
    35041 actaaattct tgattatttg ctttttctaa agtatagatt gcaaggcgtt ttgtatcagt
    35101 tcctacgaag ttaattttat ctgtttttat atctaaaaat gcaccattta aggagtattt
    35161 tgggttgttt gtatcaatac ttggtaatat ctttttaaga gaacgactta agtcacttga
    35221 atcaatgtca aattggtttt ttccttctgt atttggaaaa tttggaaaat cttcatgatt
    35281 aaacatagga agtttgtatt ttgtgctttt ttgtcttata aataaaaaat tatcaatagt
    35341 ttctaaaaca acttcttcat tgtttaagct tttaataaca tctgcaatac tttttgcgtt
    35401 tgcagtagca aaaccacttg attctacgcg gatttttttt atcttatagt tgatacctat
    35461 ttcataatca ctagctctaa taagaagttt atcttcatca gcatgaaaaa aaagatgaga
    35521 agtaatggtg cttgagtctt ttttttctac ataagcatta cataaaatca ctgcagattc
    35581 taaagtattt ttattgatac ttaacttcat tttttctcct tggtttattt taattttaaa
    35641 ttcgttgtaa taataagctt gttgaaattg tgaaattctt caaagcaaaa taatcaaatt
    35701 tgtattttat catactttgc ttaatttctt tttttcacac tctagaattt atttttcaca
    35761 tcctttcact taactttgac ttttaacaag aattttgttt ttaagttctt cgatttttgc
    35821 ttttaaagaa gcatcatttt ctatcatttc tgtgattttt ttaacattat gtgaaatagc
    35881 tgtatggtct ttcatttcaa aataattcgc aagttgtggc atagtcaaag ccgtaagtgc
    35941 cctagctagg taaatcacaa tgcgtcttgc tgtgactata ttttgagttt ttttattgga
    36001 tttcacatcg cttggtttga tgttaaattc tttacatacc aaagataaaa tgtcatctat
    36061 agtgatattt tctttctttt ctttgatatg atctttcatc acacttttgg caagttcgag
    36121 tgtgatttct tgtcctagta tggttgcata agcatttaaa cttatgatga taccttcgat
    36181 ttctcttata ttatccccta aagaagtagc gatatagttt atgatatcat tagaaagatt
    36241 gatatcgtta aattcacatt tttttcttat gatggctatt tttgtatcta gttgaggtgg
    36301 agttatatca gctatgatcc catgtgcaaa acgacttttt aagcgttcgg ttataccttt
    36361 tagcatgttg ggtggattgt ctgaagtcat gatgatttgt ccatcgttat ttttgatttc
    36421 attaaatata aagaaaaatt cttcttgaat tttatcggtt tttcctaaaa actgcacatc
    36481 atctataagc aaaacatcgc agtttctata cttttcatga aatttatcta aagagccatt
    36541 ttttaaattt gaagtaaaat cattgataaa attttcactc gtagcataaa taactttttt
    36601 tcccatttct aagcttgcat ttccaactgc ttgaagtaaa tgtgtttttc caagtcctgt
    36661 aggcccataa acaaagatag gattataaag ttttccaagc ttatctttat gtgttatagc
    36721 tttacatgct ccataagcgt atttgttaga atcccctaca acaaaacttt caaaagtaaa
    36781 agaaggattt aaaatcgtgc tttgtgcttt tatatgagct atgtcgattt ttgtgctttt
    36841 gttattttgt ttagcacttt gtgcttgtat atttatgatg gctttatttc cgctttgcac
    36901 ttcataaaaa tgcgcgattt ttttgccgta ttttgtttgt atgaatttag ccatgagttc
    36961 atttggagcg ttaaaaacca aaagatctgc tttgctttgt ttttcgttga attttaaatt
    37021 tgatagatag ttttcgtatt cgttttcgct taattctttt tttaaatttt caagtatttg
    37081 gcttggattc ataatctctc tttaaatttt gcataatgta taaattttat cttaaatttc
    37141 ataaaaaaag gttaaaatcc gcttttgtat tttatttttc aaaaggtatg aatttgaaaa
    37201 ttttaggtat agatccaggt tcaagaaatt gcggttatgc tatcatagaa gctgacaaag
    37261 gaaaaaacat tctcatagaa gcaggactta taaagataaa gccaagtacc ttacagtatc
    37321 aaatcacaga gctttgcgag ggtttggact tgatttttaa aaatcattct tttgatgaag
    37381 tggctataga agatatcttt tttgcttaca atccaaaaac cgttttaaaa ctcgcacaat
    37441 ttcgcggagc cctatcttta aaaattcttc aaattcatgg agattttgca gaatacactc
    37501 ccttacaagt aaaaaaagcc gttacaggaa aagccaaagc aactaaagaa caagttgctt
    37561 ttatggtaaa aaggctttta ggacttagta aagatatcaa gcctttggat atcacagatg
    37621 ctattgcagt agctttaacc catgcagcaa atttaagagt tagggtgtga ttttagtaat
    37681 ttttattaca caaaagccca aagcttcata aactcccaaa atacctttaa attttttcta
    37741 taaattttta aaaaattcat aaaaaatttc aaaagttgga acagaacttg cttgtaaact
    37801 tcacataaac gcaaaagttt tttaaagcca aagcgttaaa ttttttaaag caatatttta
    37861 taaaggattt aagatgatga gatcactttg gtctggcgta agcggactac aagcacatca
    37921 agttgcgatg gatgttgaag gtaataacat ttcaaatgtt aataccactg gttttaaata
    37981 ctcccgtgca gattttggga ctatgtttag ccaaactgtg aaaatcgcta cagctccaac
    38041 tgatggaaga ggtggatcta atccacttca aattggtctt ggcgtttcag taagttctac
    38101 aactagaatt cattctcaag gttcagttca aaccacagat aaaaacactg atgtggctat
    38161 aaatggtgat ggttttttta tggtgagtga tgatgggggg cttacaaact atcttacaag
    38221 gagcggggat tttaaacttg atgcttatgg aaattttgtc aataatgccg gctttgtagt
    38281 tcaagggtgg aatatcaact gggatgatca aactatagat agttcaagaa ctccacaaaa
    38341 tatttttatc gatccaggta tgcatatccc tgcagcaaaa tccacagaag tagccatcaa
    38401 agcgaattta aatagcggtt taaatatagg aacttcaagt agaaatcttt atgcacttga
    38461 ttctgttcat ggatggaata ctaaaaccca aagagcagaa gatgaaaatg atacaggaac
    38521 tactcagttt tacacgactt ctaagaatgc tgtagaagtg acggaaaagg gtgtggatgc
    38581 gggatcactt tttaatgcta atggacaggg tttaaattta agagaaggtc aaggaatttg
    38641 ggtgtcttat gcggatgcaa aatttactac agataagcca gctaatgtta atgtttttga
    38701 tcctaataac catactaatc aaaatggatc tattttttgg ggtgataaag ataatgctgt
    38761 aattttggat attaccttaa atggtgtaaa tatacaaaat gcaaatatta gaagtttaga
    38821 tgaagctata gcttatatca atacctttac tgcaccaacg gatacaagag atggaacagg
    38881 agttaaagct gtaaaaaaag cagatggttc aggtatagaa tttgtcaacg ataatgccga
    38941 tggtactact gacaatatga aaaatattaa tttaactgtt aatcaagcta atactgcagg
    39001 ggaaagacat gcaatcactt ggaatgccgg aaataataat tttacagcaa caagtgctaa
    39061 aaacaatgct aactctgtat ggattccaac agcagctaat gtgaatggta acgcagagag
    39121 catacaaata ataacggctc ataaatatat ttatagctct accccagttg atattcctcc
    39181 tatgtataat ccagatggtg gtccaaattt tattgctaat ggtaatcaaa gacctacaga
    39241 tcctgcttct gctaattatt gggatgctat acaaggaagt ttaaaaaatg ctactgaaag
    39301 aacttttaga accacagaag atttaagaga gcttttgcaa agagatgcta gatatggagt
    39361 agactatgat ggaaatggaa gttcaggata tgatgctaat gatatcaatc aagctgtaaa
    39421 agtagtggta actgaaaatg gtaattttgc tatttctaac gcaaatgaaa cttctactat
    39481 accagctaat gctggtgctg gtgctggtgc tgctacaaca aatccaaaaa atatgagttt
    39541 taatataact gcttatagta ataaacaagg aactgtaagt accaatgatg cctttactaa
    39601 aatttttaaa gcttttgacg gagttttaac agtcggaggt cagatcaaag aaagcgaaca
    39661 acttaagctt tctgcttttt cagcaggact tgaaatttac gattccttag gttcaaaaca
    39721 cactttagaa gtgcagtttg ttaagcaaag caccactcaa gatgggggta atgaatggca
    39781 aatgatcatc cgtgtaccag aacctgcaga gattaacact acaggtgaag gtcctacaaa
    39841 tatcatcgta ggaacagcaa gatttaataa tgatggatct ttagctaatt atacaccaaa
    39901 aacgataaat ttttcaccaa ataacggtgc tgcaccaaat caacaaatca aactttcctt
    39961 tggaacaagt ggaagcaatg atggccttgt aagctcaaat tctgcttcaa ctctaacagg
    40021 acaggcaact gatggttata cttcaggtaa cttaaaacct gatgctatcc gtgtggatga
    40081 caaaggtaat atcttaggtg aatttactaa tggcaaaacc tttgctgtag caaaaatagc
    40141 aatggcttca gtggcaaata actcaggtct tgaggaaatt ggtggaaatc tttttaaagt
    40201 cactgcaaat agtggtaata tcgtagtagg cgaagcagga acaggaggtc gtggtgaaat
    40261 gaaaacctca gctcttgaaa tgtcaaatgt ggatttaagt cgttctttaa cagagcttat
    40321 tatcattcaa agaggttatc aagcaaattc aaaaaccatt tcaacgagtg atcaaatgct
    40381 tcaaactcta atccagctta aacaataatt taagcttagt attctataaa atattgtttt
    40441 ttgctccctt taagggagca agccttgctt tacaagccta tcttggtagt cttgtaatac
    40501 taggcttagg cttgaactgc cttcaattta ttgctaactc actcttgcta ggggtgagtt
    40561 gcaataaaat tgcattttct tatctgtatc ataatcgttt taaaaactta ttttgttata
    40621 atttttgctt gaatttaaat ttaaggaaaa tctatgcgtt atggtgaaaa agaaatcaaa
    40681 gaatttgatg tagaaaatat ggaaatttgg ccaaatgatg cgaaaaatga ctatatcatt
    40741 aaaatcactt tacctgaatt tatgtgttgt tgtccgcgtt cgggttatcc tgactttgcg
    40801 acgatttatc ttgagtatat gcctgataaa tttgtggttg agcttaaggc gataaaactt
    40861 tatatcaata cttttatgta tagaaatgtt tcacatgaag caagtatcaa tgaaatttac
    40921 aatactttaa aagataaatt aaaaccaaaa tggattaaag ttgtggggga ttttaacccg
    40981 cgtggaaatg tacatacggt gatagaatgt cgtagcgata tggtagtgcc aaaataatat
    41041 ttgagtaaaa tattaacata tttttatgca aagattaagt attttatcaa aaattcttat
    41101 ttaatctttg aagaatatat aatataaaaa gatctaaatt ttttagatcg aattttatta
    41161 taaggagtta ggttatgaat aaaaaattat taagcattat cgcaagtact actttgtttt
    41221 caaatttggc tttagcagat gagaattctg gtttttttat aggtgctgat gcagcttgga
    41281 tgcatgctca agtaaaaagt gagttaaaac ataagaatac aaagcaaaat tttaatggag
    41341 atatttcagg taatatacca tcgtttggtc taaaacttgg atatcgttta aatgaaaatc
    41401 atagaattta tgctggttat aattattctg atgaatttag tgattttatc aaaactccta
    41461 aaattcaaat cgaaggtgat tttactacac ataaattttt aacaggttat gattttactc
    41521 ctaagctttt tgaaaaaacc agagctgttt taggtgtgta tggaggatat gcaagaacag
    41581 atcttacctt aaaaacaagc tttttatctt tgtcgcaaaa ttttgacggt tatttttatg
    41641 gagcgaaaat aggtgcttta tatgatttga caccacataa tgaaatagaa ttaggcttta
    41701 aagcagagca aattcattat aattctagaa atttttatca aaataaagtg ggttcaaact
    41761 tttacgatcc taaacaaaca aattatggtg tatatttagg atataattat aaattttaat
    41821 ctaatgcaag tttttataac ttgcattaat gaaatcaacc tccaccgata aagtattttt
    41881 caacatcatc aagtagtttt tcacaaattt gagaatctgt atttttttct actacaagat
    41941 tgatataagt tttagtatct ctgaaacttc ctgctgattt tgaattttca cgagtgagtt
    42001 tttgattctc tttagtatat tctatagtga tgttaaattt tagagcagca cttgcttcac
    42061 ctaaattcgt ttttactact acattcattt tagaagcttt agcaagtgta gcttgggttt
    42121 tgtttatgat ctctttaaag cgttggcaag atcgtataag tgtagcgata aatttgttat
    42181 caagtccttc ataagctact ttgagtttat ttttgatatc ttttgtactt tctttttcag
    42241 gggcaacaaa aaccatataa aaaccatttt ttatagtcac attgtctgtt tttacatcgc
    42301 gtccacttga cataacttta acataaatgg cattatcaag ataaacacga tctaccatag
    42361 gcccataaat ttcgtattct ttttttcgga ctatgacttc acgagctagg acatttaatt
    42421 tcacattggc ttcgtggata acaggttcca tttctttttt aatctctaag agttctttta
    42481 acatcaactt cctttttgtt acttaaaatt acaattatat caataatttt cttaatttaa
    42541 gaattttaca aacacattta ctaaaaatat gatacattaa gtattaattt taacaaagga
    42601 ggaaaagatg aaacaaattt ttgaaatttc aaattcagtc caacaaaaaa gtaaagacaa
    42661 tacttttaat ctgctactgc aactctcact ctaaaactca attttatttt taatcatttt
    42721 ttacattttt aattttttat cattgttgtt aagtttttga atttttaatt cattcagtct
    42781 gtttggtttt aaaggattaa atcatgaaag ataataaaat cataatcttt gataccactt
    42841 tgcgagatgg agaacaagct ttaggcagtt ctttgggtat caatcaaaaa ttacaaatcg
    42901 ctttagcgct tgaaaattta ggcgtagacg ttatagaagc aggttttccg gtatcttcac
    42961 aaggggattt taaagcggtg caaaagatcg cttctaaggt taaaaactca actatttgtg
    43021 cactttctag agcattggat aaagatatag atatggctta tgaagcttta aaagtggcaa
    43081 agcattttag aattcatact tttatagcca cttcgacttt gcatatgcaa gataaattaa
    43141 aaaaagattt tgatgaaatt ttgtctatgg caaaaagagc gattataaga gcaagatctt
    43201 atactgatga tgtagaattc tcatgcgaag atgcaggaag aactctgata gataatcttt
    43261 gttttatggt ggaaaatgcg ataaaagcag gcgctaaaac tataaatatc ccagataccg
    43321 taggctatac cttgccaagt gaatttgcta atatcatcaa aattttattt aacaaagtgc
    43381 caaatataga caaagctatc atttctgtgc attgtcacaa tgacttaggt atggcaacgg
    43441 gcaatagctt aagtgctatt ttacaaggtg caagacagat agagtgcact ataaatggac
    43501 ttggcgaaag ggcgggcaat tgtgctttag aagaagtggt tatggcgata aaaactagga
    43561 aagattattt aaaaggtttt tatactgata ttaaatgtga aaatatcttt aaaacttcaa
    43621 aattagtttc agctatcact aatgaaagca taccttcgca taaagctata gtgggtagca
    43681 atgcgttttc tcatagttca ggcattcatc aagatggagt gcttaaaaat aggcaaattt
    43741 acgagatcat aagccctagt gccataggaa ttcatgacaa tcgtatgtta atgacggcaa
    43801 gaagtggaag ggctatgata aaaacttgcc ttgaaaattt aggctatgat gaaaatactt
    43861 ataatttaga tgatgtttat gagcgttttt tacgccttgc ggataaaaag ggtcaagtat
    43921 atgattatga tttggaagct ttgatgtttt taagctatga aaatgaagaa gaaaatgaat
    43981 ttgtgattga aaaattaagc gtgattagtg gcaatatccc aactgcttgt gtttgtatgc
    44041 gtattaaaga agagttaaaa actgaagctt gcacaggaaa tggtcctgtt gaagcagttt
    44101 ttaactgcat tgctaggata acaaatttaa agcctgtgtt aaaagcttat agtatcaatg
    44161 caaaaagttc aggagtagat gctcaagggc aagtggatgt ggatttggaa tttaaaggga
    44221 gaaaattcca tggaaaagga ctttcaacag atgttataga agcttcagca caagcttttg
    44281 tgagtgctta caatgcgatt tatcgctctt taaaagtaga agaaaggaaa atggcatgaa
    44341 aacttataaa gtagctgtct tagcaggaga tggtataggg cctttggtaa tgaaagaggc
    44401 tttaaaaatt ttaactttta tctcacaaaa atacaatttt agttttgaat ttaatgaagc
    44461 taaaataggc ggtgcaagta tagatgctta tggagtggct ttaagtgatg aaactttaaa
    44521 gctttgtgag caaagtgatg cgattttatt tggttctgtg ggtgggccta aatgggataa
    44581 tttgcccata gatcaaagac ctgaaagagc ctcgcttttg cctttaagaa agcattttaa
    44641 tttgtttgca aatttgcgtc cttgtaaaat ttatgaaagt ttaactcatg cttcaccttt
    44701 aaaaaatgag attatccaaa aaggagtgga tattttatgt gttagagagc ttacaggtgg
    44761 gatttatttt ggtaagcaag atttaggcaa agaaagtgcg tatgatactg aaatttacac
    44821 taaaaaagag atagaaagga taactcatat cgcttttgaa agtgcaagaa taagaaagaa
    44881 aaaagtgcat ttaatcgaca aagcaaatgt tttagcaagt tctattttgt ggcgagaagt
    44941 ggtggcaaat gttgcaaaag attatcaaga tataaactta gagtacatgt atgtggataa
    45001 tgctgcgatg cagattgtaa aaaatcctag catttttgat gttatgcttt gttcaaatct
    45061 ttttggtgat attttgagcg atgagttagc tgccattaat ggatctttgg gtttgttaag
    45121 ttcagcaagt ttaaacgata aaggttttgg actttatgag ccagcaggtg gaagtgcacc
    45181 tgatatagct catttaaata tagctaatcc catagctcaa attttaagtg cggctttgat
    45241 gttaaagtat agtttcaaag aagaacaagc cgcacaggat atagaaaatg ctatatcttt
    45301 ggcattggca caaggaaaaa tgactaagga tttaaatgct aagtcgtatt taaatactga
    45361 tgaaatgggg gattgtattt tagaaatttt aaaggagaat aataatggct aaaactttat
    45421 atgagaaagt ctttgatgct catgtggttt atgaaggcaa aaacgaactt cctatacttt
    45481 atatcgatag acatttaatc catgaagtaa caagccctca agcattttca gggcttaaaa
    45541 tggctaagcg tagaatggca agagcggatt taactttggc taccatagat catgatgttt
    45601 caactaaaag cgtggattta aatgcttgtt ctgatatggc aaaagagcaa attacaactt
    45661 tgatgcaaaa tactaaggaa tttggagtaa ggcttttagg acttggagat aaaaatcaag
    45721 gcatagttca tatagtaggt cctgagcttg gctttacttt acctggggtt actttagttt
    45781 gtggggattc tcatacggca acacatgggg cttttggagc tttagccttt ggtataggca
    45841 cgagtgaagt agagcatgtc atggcaacgc aaactttaaa acaagccaaa cttaaaacta
    45901 tgaaaatcga atgtaaaggg cagtttcaaa aaggcgttta tgctaaggat ttgattttgt
    45961 atttgatcgc acaatacggc acagcaaaag gcacaggtta tgctatagaa ttttgtggag
    46021 aacttataaa aaatttaagc atggaagcta gaatgactct ttgtaatatg gctatagaat
    46081 ttggagctaa agtaggtatg atagctcctg atgagatcac ttttgagtat attaagggaa
    46141 aggaatttgc acctaaagga gaagaatttc aaaagtattg cgagtattgg aagagtttaa
    46201 gaagcgatga aggagcaaaa tatgatgaga gtattactct agatgtaagc aagataaaac
    46261 cacaaattag ctatggaaca aacccttcgc aagtgattgg tatagatgaa aaaattccaa
    46321 aaataagtga ttttaaaaat caaagtgagc aaaaatcttt gcttgatgct ttatcttatg
    46381 taaatttaga gcaagatcaa gttatagaag gggtaaaaat cgacattgta tttataggat
    46441 cttgcacaaa tgggcgttta gaagatctta aaatagccgc tgatatctta aaagggcgca
    46501 aaattcataa aaatgttaaa gctttaatcg tgcctggttc aatgcaagta agaaaagaag
    46561 ctgaaaattt aggactcgat aagattttta tcgaggcagg gtgtgagtgg agatatgcag
    46621 ggtgttctat gtgtcttggt atgaatgatg acaaagcaaa ttcaggtcaa agagttgctt
    46681 caacttcaaa tcgtaacttt gtaggcagac aaggtaaagg ttctatcact catttgatga
    46741 gtcctgcaag tgcggcagct tgtgccatag aaggtgttat ttgtgataat agaaagtatt
    46801 taggagttta atatgcaaaa atttattata cataaaggta tagcttgtcc tttagaatat
    46861 gccaatatag acacagatca aattatacct aagcaatttt tacttgcagt gtctaagcaa
    46921 ggttttggca agcatttgtt ccatgatttg cgttatttag atgataaaga aagtgtttta
    46981 aatatggatt ttaatctcaa taaaaaagaa tatcaaaata gctctatttt ggtgagtttt
    47041 gaaaattttg gtagtggctc ttcaagagag catgcgcctt gggctttggt tgattatggt
    47101 attagagcta ttatcgcacc ttcttttgcg gatattttta aaaacaatgc cttaggaaac
    47161 ggtttgctca ctatagaact tgctaaagat gaggttttgg aaatagttga tgagttaaaa
    47221 aaatcccaag ataaaaatat agaaatttct ttgttggaaa aaagagtatt ttttaaagat
    47281 aagatttttt cttttgattt agatgatttt cacagaattt gtcttttgga agggcttgat
    47341 aatatagctt taactttaaa acatgaagca caaatcaaag cctatgaaaa aaactcaaaa
    47401 agctttttgg tttagaattt tttcataagc taaaaaagga tcttggtaat taggtatgtc
    47461 aaagtttcca caaaaattaa aatcaagctt tttaaaaagc gaattcatag gaaaattttt
    47521 actatgagta tctgctctta aacttgcctt gtgattttcc aaggcaaaat tttcgcaaaa
    47581 atttaaaagt ttttgtgcca cgcctttgcc ttttgccttt tgtttgacag ctaaacggtg
    47641 tagataaaag gctttatcat cataattttt gttaaaaata acttgtttgt aaaattcagg
    47701 ttcaaatttt tcattgatac agataaagcc taaaatttca tcattttctt taaacacata
    47761 aagttcttgt gcttgtatat cttcttgaaa aactatttca ttgggataat tctcatccca
    47821 ttggtgaaaa ttcatagttt tcatagcatt taaagcatct tttgtgattt caagtataga
    47881 atttaaatct ttattgacgg ctttttgtat gatagtgttt tgcatgataa tcctttgtat
    47941 aaggaagggt gatggtggct ccgattggac ttgaaccaac ggccactacc atgtcaaggt
    48001 agtgctctac cagctgagct acggaaccat atggtggagc atagcgggtt cgaaccgctg
    48061 accccaacgc tgccagcgtt gtgctctccc agctgagcta atgccccttt ataagtctga
    48121 gattttatcg caatattact tgtttttggc tgaaaactaa aatcaaattt ttaatttatg
    48181 atgtaatata tgtataaaaa gatttatttt ttatgaaaaa ttagagaatt aatgagagta
    48241 attttactat ttgattaatt ctaaaatatc tctttt
//
LOCUS       DARGEX010000003        44446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.003, whole genome shotgun sequence.
ACCESSION   DARGEX010000003 DARGEX010000000
VERSION     DARGEX010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 44446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.003"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1401
                     /gene="aspA"
                     /locus_tag="SF010_000118"
     CDS             <1..1401
                     /gene="aspA"
                     /locus_tag="SF010_000118"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG8229087.1"
                     /translation="TRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPRFV
                     RALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTSTN
                     MNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDLAK
                     AMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEARK
                     LILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQIS
                     GVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQV
                     CYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGITAN
                     EKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQIDE
                     ILTPSNMLNPHMEAKK"
     gene            1418..2755
                     /locus_tag="SF010_000119"
     CDS             1418..2755
                     /locus_tag="SF010_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8229088.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2863..4224
                     /locus_tag="SF010_000120"
     CDS             2863..4224
                     /locus_tag="SF010_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEG8229089.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVSIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4234..4602
                     /locus_tag="SF010_000121"
     CDS             4234..4602
                     /locus_tag="SF010_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG8229090.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLVSDTRAKEFRLEIKAKN"
     gene            4626..5249
                     /gene="lpoB"
                     /locus_tag="SF010_000122"
     CDS             4626..5249
                     /gene="lpoB"
                     /locus_tag="SF010_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG8229091.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQIKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5332..6669
                     /locus_tag="SF010_000123"
     CDS             5332..6669
                     /locus_tag="SF010_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229092.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNVTNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLTNTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6679..7881
                     /locus_tag="SF010_000124"
     CDS             6679..7881
                     /locus_tag="SF010_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229093.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDTNGKYTVNVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDFSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKLSYAKITEGSVKVGDICRPLIGSNSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8040..8348
                     /gene="rplU"
                     /locus_tag="SF010_000125"
     CDS             8040..8348
                     /gene="rplU"
                     /locus_tag="SF010_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG8229094.1"
                     /translation="MYAIIKHSGKQYKVSVGNELKLDHFEAESKANIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8359..8613
                     /gene="rpmA"
                     /locus_tag="SF010_000126"
     CDS             8359..8613
                     /gene="rpmA"
                     /locus_tag="SF010_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG8229095.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8720..9757
                     /gene="obgE"
                     /locus_tag="SF010_000127"
     CDS             8720..9757
                     /gene="obgE"
                     /locus_tag="SF010_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG8229096.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            9880..10635
                     /gene="proB"
                     /locus_tag="SF010_000128"
     CDS             9880..10635
                     /gene="proB"
                     /locus_tag="SF010_000128"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG8229097.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10709..11626
                     /locus_tag="SF010_000129"
     CDS             10709..11626
                     /locus_tag="SF010_000129"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8229098.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11589..12242
                     /locus_tag="SF010_000130"
     CDS             11589..12242
                     /locus_tag="SF010_000130"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG8229099.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12239..13024
                     /locus_tag="SF010_000131"
     CDS             12239..13024
                     /locus_tag="SF010_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG8229100.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13030..13866
                     /locus_tag="SF010_000132"
     CDS             13030..13866
                     /locus_tag="SF010_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG8229101.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            13927..14352
                     /locus_tag="SF010_000133"
     CDS             13927..14352
                     /locus_tag="SF010_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG8229102.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14363..14875
                     /locus_tag="SF010_000134"
     CDS             14363..14875
                     /locus_tag="SF010_000134"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG8229103.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVENIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            14878..15399
                     /locus_tag="SF010_000135"
     CDS             14878..15399
                     /locus_tag="SF010_000135"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG8229104.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            15413..16918
                     /gene="atpA"
                     /locus_tag="SF010_000136"
     CDS             15413..16918
                     /gene="atpA"
                     /locus_tag="SF010_000136"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG8229105.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            16927..17811
                     /locus_tag="SF010_000137"
     CDS             16927..17811
                     /locus_tag="SF010_000137"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG8229106.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            17836..19233
                     /gene="atpD"
                     /locus_tag="SF010_000138"
     CDS             17836..19233
                     /gene="atpD"
                     /locus_tag="SF010_000138"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG8229107.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            19237..19626
                     /locus_tag="SF010_000139"
     CDS             19237..19626
                     /locus_tag="SF010_000139"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG8229108.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNVRMH"
     gene            19626..20180
                     /locus_tag="SF010_000140"
     CDS             19626..20180
                     /locus_tag="SF010_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8229109.1"
                     /translation="MNFEAIFYFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            20189..20578
                     /locus_tag="SF010_000141"
     CDS             20189..20578
                     /locus_tag="SF010_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG8229110.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNIAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            20581..21360
                     /locus_tag="SF010_000142"
     CDS             20581..21360
                     /locus_tag="SF010_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG8229111.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQVDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            21370..22578
                     /gene="tolB"
                     /locus_tag="SF010_000143"
     CDS             21370..22578
                     /gene="tolB"
                     /locus_tag="SF010_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG8229112.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            22655..23152
                     /gene="pal"
                     /locus_tag="SF010_000144"
     CDS             22655..23152
                     /gene="pal"
                     /locus_tag="SF010_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG8229113.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            23156..24103
                     /locus_tag="SF010_000145"
     CDS             23156..24103
                     /locus_tag="SF010_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8229114.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSFLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            24118..24687
                     /locus_tag="SF010_000146"
     CDS             24118..24687
                     /locus_tag="SF010_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8229115.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARVASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGSGCGCH"
     gene            24687..25607
                     /gene="fabD"
                     /locus_tag="SF010_000147"
     CDS             24687..25607
                     /gene="fabD"
                     /locus_tag="SF010_000147"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG8229116.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTRKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVI"
     gene            25604..26293
                     /gene="pfs"
                     /locus_tag="SF010_000148"
     CDS             25604..26293
                     /gene="pfs"
                     /locus_tag="SF010_000148"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG8229117.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKVEHANNTYYFANYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KVREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            26290..27045
                     /locus_tag="SF010_000149"
     CDS             26290..27045
                     /locus_tag="SF010_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HEG8229118.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALVHL
                     LNRMQAHAPFKFELEAITLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYKVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIYNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKEHPKLFTSLKTAFANLHTESFWLQKA"
     gene            27050..27571
                     /locus_tag="SF010_000150"
     CDS             27050..27571
                     /locus_tag="SF010_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG8229119.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFNKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            27571..28185
                     /gene="recO"
                     /locus_tag="SF010_000151"
     CDS             27571..28185
                     /gene="recO"
                     /locus_tag="SF010_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG8229120.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            28182..28589
                     /gene="ybeY"
                     /locus_tag="SF010_000152"
     CDS             28182..28589
                     /gene="ybeY"
                     /locus_tag="SF010_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG8229121.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            28713..29402
                     /locus_tag="SF010_000153"
     CDS             28713..29402
                     /locus_tag="SF010_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229122.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(29427..30353)
                     /locus_tag="SF010_000154"
     CDS             complement(29427..30353)
                     /locus_tag="SF010_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG8229123.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(30350..31336)
                     /locus_tag="SF010_000155"
     CDS             complement(30350..31336)
                     /locus_tag="SF010_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229124.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(31326..31688)
                     /gene="dksA"
                     /locus_tag="SF010_000156"
     CDS             complement(31326..31688)
                     /gene="dksA"
                     /locus_tag="SF010_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG8229125.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(31700..32149)
                     /locus_tag="SF010_000157"
     CDS             complement(31700..32149)
                     /locus_tag="SF010_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG8229126.1"
                     /translation="MQVNIFCIQKNDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(32151..32993)
                     /locus_tag="SF010_000158"
     CDS             complement(32151..32993)
                     /locus_tag="SF010_000158"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG8229127.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(32990..33724)
                     /locus_tag="SF010_000159"
     CDS             complement(32990..33724)
                     /locus_tag="SF010_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG8229128.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFKNNQAFKSNLSDPKYSPLTPNLFPKIGIVEKISFYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNNYVNI"
     gene            complement(33724..35943)
                     /gene="bamA"
                     /locus_tag="SF010_000160"
     CDS             complement(33724..35943)
                     /gene="bamA"
                     /locus_tag="SF010_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG8229129.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            36020..36847
                     /locus_tag="SF010_000161"
     CDS             36020..36847
                     /locus_tag="SF010_000161"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG8229130.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            36927..38300
                     /locus_tag="SF010_000162"
     CDS             36927..38300
                     /locus_tag="SF010_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8229131.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATSYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            38300..39184
                     /locus_tag="SF010_000163"
     CDS             38300..39184
                     /locus_tag="SF010_000163"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG8229132.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHRLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            39223..39624
                     /locus_tag="SF010_000164"
     CDS             39223..39624
                     /locus_tag="SF010_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG8229133.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPVEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            39633..40511
                     /locus_tag="SF010_000165"
     CDS             39633..40511
                     /locus_tag="SF010_000165"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8229134.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKECILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            40536..40793
                     /locus_tag="SF010_000166"
     CDS             40536..40793
                     /locus_tag="SF010_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG8229135.1"
                     /translation="MKKHIPIRMCIACKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            40780..43395
                     /gene="infB"
                     /locus_tag="SF010_000167"
     CDS             40780..43395
                     /gene="infB"
                     /locus_tag="SF010_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG8229136.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGFEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCI
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            43392..43754
                     /gene="rbfA"
                     /locus_tag="SF010_000168"
     CDS             43392..43754
                     /gene="rbfA"
                     /locus_tag="SF010_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG8229137.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            43744..44166
                     /gene="rimP"
                     /locus_tag="SF010_000169"
     CDS             43744..44166
                     /gene="rimP"
                     /locus_tag="SF010_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG8229138.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            44222..>44446
                     /locus_tag="SF010_000170"
     CDS             44222..>44446
                     /locus_tag="SF010_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEG8229139.1"
                     /translation="MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYV
                     YQEGKFIDEFHTKSQGDKWTSSILNYLKTMS"
BASE COUNT        16084 a         5788 c         8033 g        14541 t
ORIGIN      
        1 acaagaaaag aacatgattt tattggggaa ttagaaatct ctgatgaggt ttattatgga
       61 gtgcaaactt ttagagctgt tgaaaatttt gatatttctc atgatagatt aaaagatttt
      121 cctcgctttg ttagagcttt ggctagagta aaaaaagctg cagctatggc aaatcatgaa
      181 ttaggtcttt tggataaaaa tatccaagat gcgattatta aagcgtgcga taaaatttta
      241 gaaggcgggt attatgatca atttgtagta gatatgatcc aaggaggtgc tggaacaagt
      301 acaaatatga atgctaatga agttatagcg aacataggac ttgaacttat gggtcataaa
      361 aaaggtgaat accaatatct tcatccaaat gatcatgtta atttaagcca aagtactaat
      421 gatgcttatc ctacggcttt acaccttgcc ttgcatgatt atttaagtga tttggcaaaa
      481 gctatggaac atctaaaaaa agcttatgag agaaaagctg aagaatttaa agatgttctt
      541 aaaatgggta gaacccaact gcaagatgct gtacctatga ctttaggtcg tgaatttaaa
      601 acttttgccg taatgatagg tgaagatata caaagagtat tagaagctag aaaattgatt
      661 ttagagatca atttgggtgg aactgctatt ggaacgggaa ttaattctca tcctgattat
      721 ccgaaggttg tagaaagaaa aataagagaa gtgacaggtt ttgaatatac tgtggctgag
      781 gatttgatcg aggcgactca agatacggga gcttatgtac aaatttcagg tgttttaaaa
      841 cgtgttgcaa caaaactttc taaagtatgt aatgacttaa gacttttaag tagtggtcca
      901 aaatgtggtc ttaatgagat taatcttcca aaaatgcaac caggtagttc tatcatgcca
      961 ggtaaggtaa atcctgttat tcctgaagta gttaatcaag tttgttattt tgttattgga
     1021 gcagacgtaa ctgtaacttt tgcttgtgag ggtggacaat tgcaacttaa tgtttttgaa
     1081 ccagttgtag catatagctt atttaattct gttgtaatgc tagaaaaagc aatgtatact
     1141 ttagctgata aatgtataga tggtattacc gcaaatgaaa aaatttgttc agactttgtc
     1201 tataattcag taggtatagt aacagcttta aatccttata ttggttatga aaattcagct
     1261 tctatagcta aagaggcaat gaacactgga aaaagagtgg ctgatattgc gcttgaaaga
     1321 gggcttttaa gtaaagaaca aattgatgaa attttaactc catcaaatat gctaaatcct
     1381 cacatggaag ctaaaaaata gcattttagg atttaatatg gatataatga taattttgca
     1441 agtaatcgtc cttcttgggg cgatttttat cggtattcgc ctaggcggca ttgctatagg
     1501 ttatgctgga ggattaggtg tagttatact aggacttgtt ttaggtatga aacctggtaa
     1561 tattccttgg gatgttattt taattattgc tgcagctatt gcagcaattt ctgctatgca
     1621 acaagcaggt ggacttgatt atatggtaag ggtgacagaa aaaattttaa gatcaagccc
     1681 taaatttata aattatttag ctccagcttg tggatggttg cttacaatct tagcaggaac
     1741 aggaaatgca gtattttctt taatgcctgt tgtagttgat gttgcaaaat ctcaaaacat
     1801 aaaacctagt gttccacttt cattaatggt tgtttcttcg caaattggaa tcactgcttc
     1861 tcctgtaagt gcagctgtgg tttatatgag cggagtttta gagccacttg gatggaatta
     1921 tccaacttta attggaattt ggattagcac aacttttgta gcttgtatgc ttacagcttt
     1981 tatagtgagt ttaatcactc ctatggattt aagcaaagat agcgtttatc aagaacgctt
     2041 aaaagcagga cttgttaaag atgcaggagc tattttacat ggtgaagata aaccaggtgc
     2101 taaactttca gtggtaattt tcttgatcac tgttttggca gttgtacttt atgcaaccgc
     2161 aatttcaagc aatattaaat ggattgatcc tgttgtggtt ccaagagatg cagctattat
     2221 gagcttttta cttactgcag caactttgat cacttggctt tgtaaagttg aaccaggtaa
     2281 aattcttgat accagtgtat ttaaaagtgg tatgactgct tgtgtttgcg tttttggtgt
     2341 agcatggctt ggaaatactt ttgttgcagg acacgaagct tctattaaag aagtagcagg
     2401 cgactgggtt aaacaaaccc ctgctatgtt agcagttgca tttttctttg caagcatgct
     2461 tttatattct caagcagcaa ccgcaaaggc cattgtacct gtaattatca ccgctttagg
     2521 aatttcagca gcaaatccgc atgattctta tatgcttgta gcttgttttg cagcagtttc
     2581 ggcacttttt gtgcttccaa cttatccaac cttacttggt gctgtgcaaa tggatgatac
     2641 aggaacgact agaattggta aatttatatt taatcactca ttctttatac caggggtttt
     2701 agctattgca attgctgtag cattaggctt tgtattagct cctatgctta tttaaatcaa
     2761 accctaggtt tttctctcct agggttaaaa ttttttcatt agtttttaag tatatactac
     2821 gctataatat tcatttttaa ttttctttaa gaaaggaatt taatgaagat aaaagttggg
     2881 ttgatttttt caggtattgc ttgccttttt ttaacagctt gtgttaatca ggttaaacaa
     2941 aatacaacat ttgaaaatac tttaacacaa aaatattgtg gtgatgattt tttcaatcaa
     3001 aatttagaaa aaattaaaaa aaatgatgat gtcatttata caggattaaa tgcaggtttg
     3061 attgctagaa attgtggtga ttttaataaa agtaatgtat tttttgatgc tgtagaagaa
     3121 tcttataaat atgatgtgga tttagaaaat gtaagcccta aagcagctaa atttattggt
     3181 acaaccttgc ttaatgataa tatagtagat tatgatggtt ctttatatga aagaattatg
     3241 gttaatatat ataaagctct aaactatatg gaagaagatg attatgaaaa tgcaagagtt
     3301 gagtttaatc gtgctttaat gcgtcaagat aaggcaaaag aatattttgc taaagaaatt
     3361 gaaaaaaatc gtgctgattt agataaggca aaagaagata aaaattatga taaaaatatg
     3421 aatgaaaatt caaaagttat agaagcgcaa tatgataact tatttaaaga atttgataca
     3481 acaaaaaatt tcataaatcc ttatgcgact tatcttgctt caatattttt ctttatggat
     3541 aaagattata gaaaagctgc agatttattt agagaagtat ctattattta tccaaaaaac
     3601 aaaactatca aaaaagaggc taaaattttt aaagaatatg ccacaaaaat aaaagttaaa
     3661 aaagctaaaa aatatgtttt tgtagtttat gaaaatggat ttggtgtagt taaggatgaa
     3721 tttgctttaa ccttaccttt tatagtggat aaaaaaatta ttagcacaaa tattgcttta
     3781 caaaccttaa aaaaaaggga agcttctttt gcaaatttaa atataaatgg tcaaaataca
     3841 aatgattttg tagatttaga caatattgtc gctactgaat ttaaaataaa tatgcctgca
     3901 atgattgcta aagccttagc tcaaactata attaaaacca ctttaaatgt agctgttgca
     3961 aataatgact ctacaggtgg atggctaagt cttgcaacag cagtagcaac tgctgcaacc
     4021 aataaagctg atgtgcgttc ttggagaggt ttaccaaaaa gtattgccat agcaacaata
     4081 gaaaacgacg gaaatttaga aatcaaagat ccacaaggca atattttgtt tcaaaaatca
     4141 ttggataaaa ataaaaatgc tcttgtgata gtgcgttctt ttgctccgta tttacccgca
     4201 agtgttgcta tcatggaaaa ataaggctaa aagatgaaaa aaaatatttt atttatttta
     4261 atgtttttac ttagtgcttg tgcaccaagt tatcaaataa attcaaatca aaatactgta
     4321 attttaggtt caaatttacc aaaaagttta gtaaaacaat ttcaaaagcg tataaatagc
     4381 aatggttatt tagaatttga agtgattttg cgcagtactt ttgctaaaga tgtaatttat
     4441 aaagtagatt ggttagataa agatggtttt gtgctaagag atgttttaaa tgaggactat
     4501 caagccctta gaattccagc aggacaagag gtaattcttc gtaaacttgt atctgataca
     4561 agagcgaagg agtttagatt agaaattaaa gcaaaaaatt aatctcattt taggaaggat
     4621 aaatcatgaa aaaaacaaaa attttaggaa cagctcttat tggagctttg ctttttagtg
     4681 gttgtgcgca aacagcttat acagatggaa aggcaagtca gataaaaaaa ggcgatgctt
     4741 taaccttggg tcttgataga caagattttg aaagtgcagc tgaaactatg ataaatagta
     4801 tgttaagcga tcctgctttt gcaaatatta aaccaggtac aagaaaggtt attgctattg
     4861 gtagggttgt gaatgatacc ccgcaaagaa tcgatactga aaaactcacc gcaaaaatca
     4921 cttctgcatt aagaaaatca ggtaaatttg ttctaacttc agcagttgct gcaggcggag
     4981 cacttgatag catgagtgaa gatgtaagag aattaagaga taatgatgag tttaatcaaa
     5041 aaaccatagc aaaaaaaggg acattggtat cgcctgattt ttctcttgcg ggtaaaatta
     5101 gacaagataa tgtaaaactt agcaatggta aaactcaagt agaatacttt ttcttgttaa
     5161 gacttactga tttaacatca ggtttagttt attgggaaga tgaacaaact attgataaaa
     5221 ccggttctag taaatcagtt acttggtaaa ataaaaatta atttatgaat aaaatttttt
     5281 agctcaagtg tttagcttgg gcttttttta tgatttttaa aaggatacga aatgaaaaaa
     5341 atattattta tcggctcttt agttatggca agtttacttt atgcacaagg ttcccagcct
     5401 gtagaaatta cacaacaaga tataaatact caaaatgaaa tgtctgacgc aagtactaag
     5461 gatattaccc caaaatcaat tgaagatttt tttgaagaat ttgcggataa tttcggtata
     5521 gaatatggta taaccaaaga tggaaaaact ttttatacag gaaaaagtac tgttgctgta
     5581 aatgatactg atccacaatt tgcacaagct ttacaaaatg cttaccaaaa agcaatgtta
     5641 aatttgcaaa gcgaatttat aagagatgct tttggaagaa ttgctacaag caagattcaa
     5701 aattatgaag cagacaattc tactaatgct aaggaatttg atgaattgcc aaaaggtgat
     5761 aaggttgatc aaattttaaa taaacttaca caattagctg gtgctcagct tgataaggca
     5821 ttaaaagatt taggtataga tacaaattct ttaagcgaag acagaaaaaa gactttatta
     5881 aagcaagaat ttcttaataa aactatgaca aatgccatag gttctatgag tggacttgtt
     5941 cctgtgcaaa ctatagttac acaaagaaga ggtgagtatg atgtaggtgt tattgctgtt
     6001 atttccaata aaactcgcca attagcaaaa gatatggcac tagcaagaca gagtgctatt
     6061 aagggtaaag gcaaggcaat aagtgagtat ctgccaaaag atacaaaagg ctttttaaat
     6121 gaatatggaa ttcgcttagt ttatgatgaa aatggtgcac ctattatttt aagttatgga
     6181 aactggggtt atgtagcaga tcctagtaat gctaaaaaaa caaatatttt agaagataga
     6241 gccaaagaaa cagcacttac tatggctgat gctgctatta tagagtttat taatacaaat
     6301 ttaagtctta aagatgaaag aacaactggt gatacttacg aggaaatcat caaacaaagt
     6361 attaatgtta atgatagttc cactcaagaa caaactcaaa acgtaacaaa tattattgat
     6421 aaagtaaata gtaaaataaa agcaagcgca agcggtaaaa ttcgtggtat tcgtactctt
     6481 aaaaaatgga gctatacaag tgaaaatggt attgaacatg taggagctgt gagattttat
     6541 tcttatgaaa atttaactaa cacaaatgag gctttaaatt caaagtcaaa tgcaacaaaa
     6601 aatgaagcta aaaaatcttc tagcatacaa agaagttcta atgttgtaaa tagcatggat
     6661 gatttttaaa ggtaaaagat gaaaataatt aaaattcttt ttttaggctt atttttaagc
     6721 ctaagtctta atgctaaagt tataaccaca acttcaacaa aatcaagcac aggtgaaggc
     6781 acaggcttga ccagggaaga tgcgataaac aatgccatta tagaggctat aggaaaaatg
     6841 agcggagtaa gcatcaattc tcttaagaaa tctaacacta gcgtttcaac tgataattca
     6901 ggttcaaaca tacaagataa ttacagcgag caaatttcaa aagccaccaa aggtagagcc
     6961 gatacttatg aaatcaatag tgttgaacaa gatacaaatg gtaaatatac agtcaatgta
     7021 acgattttta aaaccacaac aacaaaaaag tatcaagctc caggtttaag tgcagataat
     7081 agaagaagta ttactgtttt tgattctact ccagatgctg caaaaagagg cataggctca
     7141 gctttacaac aaaaaatcat ttctgattta ttgcaaagtc gtaaatttaa tgttttagac
     7201 cgtgatttta gtggctatta tgaaatggaa aaagctttaa tcaaaagtgg tgacgcagct
     7261 agtgatgaag tttataaact taaaaatgtg ttagcaactg attatatttt attgttttct
     7321 atttcaggac ttgaaggtaa acaaaaaaca agcaatttaa caggaaaaag caaaactgaa
     7381 attgaagtta tcgtagatta tcgtgtgctt ttatttgcta caagacaaat taaattttct
     7441 aatactttaa gtatgaaagt caatcttaaa gacaatagtc ttagcgccaa tgaagctgca
     7501 ctcaaacaaa ttgcaaatcg tattgcagga gatattttaa atgcaattta tcctttgaaa
     7561 gttgcaagcg ttgaaaacaa tgaagtagta ttttctcaaa gcttaaatca aggtgatgtt
     7621 tatgaatgtt ttgctcttgg gaaggttata aaagatactt atacaaaaga aaatacagga
     7681 agagtagaaa gcaaaacagg aagtattgaa atcactcgca caagccctaa actttcttat
     7741 gcaaaaatca cagaaggtag tgtaaaagta ggcgatattt gtagaccttt aatcggtagc
     7801 aatagtggaa atggctacac tataggtcgt gatgcaaatt atcaaaccca agaaggtggc
     7861 ggagtaaatc taggctttta aatttttaga gtttgatttt tctcaaactc taaatccttt
     7921 cttaaattca tcaaaaatta aagaaaaatt ttgtaaaatc gaaattttat taaaccacta
     7981 aagcttttaa atccgttatt gcggtgcttt atggtactac caatttataa ggaaaagcaa
     8041 tgtatgctat tatcaaacac agcggaaagc aatacaaagt aagtgttggc aatgagctaa
     8101 aactagatca ctttgaagct gaaagcaaag caaatattga agtaagcgaa gttcttgcta
     8161 tcaatgataa agaattaaag gtaggtgcac ctttcgtagc aggtgcaaaa gttgttttgg
     8221 aagtgatcaa tcacggaaaa gataaaaaag ttgtgattta caaaaaaaga cgcagaaaag
     8281 attctaaact caaacgcggt tttagaagac aatttactcg cgttgtagta aaagatatca
     8341 aagcttaagg agtaaagaat ggcacacaag aaaggtcaag gttcaactca aaataaccgc
     8401 gattccatag gtcgtcgttt aggtgttaaa aaatttggtg gcgagtttgt tagagctgga
     8461 aatatcatca tccgccaaag aggaactgca actcatgcag gtaacaatgt aggcatggga
     8521 aaagatcata ctatctttgc tctaattgat ggttttgtaa aattcgaaag aaaagacaaa
     8581 gatagaaaaa aagtttctgt atatcctgca taagttttta ggacgctttt tagcgtcttg
     8641 aaaactttaa atttataaat ttaacttctt ttatttactc aaatttagct ttataaattt
     8701 aaagtcaaag gcaatttaaa tgtttattga tagtgttaaa attactttag cttcaggcga
     8761 tggtggcaaa ggtgctgtaa gttttcgccg tgaaaaacat gttccacttg gtggccctga
     8821 tggaggagat ggtggaaatg gtggtgatat tattttcgta tgtgataata atacccacac
     8881 tcttgtaaat ttcaaaggca aaagagaatt acgcgcgcaa aatggtgctg gtggaatggg
     8941 acgcaataaa aatggcaaaa agggtgaaaa tttagaactt atagtgcccg aaggaacgca
     9001 agttatcgat gtacaaacca atgaaatttt acttgatctt accaaagaag gacaaagaga
     9061 gcttttttta aaaggtggaa aaggtggact tggcaacacc cattttaaac acgccaccaa
     9121 tcaacgcccc gattacgcac aacctggtat aaaaggagaa agtcgcttgg tcagactcga
     9181 acttaaactt attgccgatg tagggcttgt gggctttcca aatgtgggaa aatctactct
     9241 tataagcgtt gtttcaaatg caaaacctga aattgcaaat tatgaattta ccacccttac
     9301 tccaaaactt ggactcgtag atgtagatga gtataattcc tttgttatgg ctgatattcc
     9361 agggattatc gaaggagcaa gtgggggtaa aggcttagga cttgcctttt taaagcacat
     9421 agaaagaacg agctttttac ttttcgtgct agatcctatg aggcaaatgc ctttaaaaga
     9481 acaatttata gtactaagaa aagaacttga aaaattttcc aatgaacttt ttgggcgtaa
     9541 atttggcatc atgatttcaa aaagtgatag tgtgaattta ggagaagaat ttgccgagca
     9601 aattacttta aacattaatg agttagaaaa ttatctcaaa gaaataaata acccacaaag
     9661 ttttttaatc aaagtttcaa gccttgaaaa aacaggactt aaagaactta aattcatgct
     9721 tttagaagaa attaaaactt taagaaataa taaataaaaa ttttaacaat ctaggaagtg
     9781 ttttatatta aaaatttcaa acactcccta ttttttcaaa aaataactag tttatatgaa
     9841 attttggcta aaattataaa aatttttcaa ggaataagca tgaaaagaat agttgttaaa
     9901 gtgggttctc atgtgattag cgaagaaaac actttaagtt ttgagcgtct taaaaattta
     9961 gtcgcatttt tagctaaact catggaaaaa tatgaagtga ttttagtaac ttcagcggct
    10021 atttcagcag gacacaccaa actagatatc gatagaaaaa atctcatcaa taaacaagtt
    10081 ttagccgcta ttggacaacc ttttttaatc agtgtttata acgagctttt agccaaattt
    10141 aataaactag gtggacaaat tttacttaca ggtaaggatt ttgactctag aaaagctacc
    10201 aaacacgcaa aaaatgctat cgatatgatg ataaatttag gaattttacc tattatcaat
    10261 gaaaatgacg ctacagctat agaagaaatt gtctttggtg ataatgatag cttaagtgct
    10321 tatgctacgc atttttttga tgcggatttg cttgtgattt taagcgatat tgatggattt
    10381 tatgataaaa atcctagtga atttagtgat gcaaagcgtt tagaaaaaat cactcatatt
    10441 aaagaagaat ggctacaagc aaccataaaa acaggtagtg agcacggaac aggtggcata
    10501 gtaaccaaac ttaaggcagc taaattttta cttgaacaca ataaaaaaat gtttttagca
    10561 agtggctttg atttaagtgt ggcaaagaca tttttattag aagataaaca aataggtgga
    10621 actttgtttg agtgattaat ttattaaatt ctcttttaaa atcaaataag ctataattaa
    10681 aacttttaat ttcacacaaa gcgaaaaaat gaaaaaaatt atttttatgg gcactccatc
    10741 ttacgcaact tgtattttaa aagcactagt agaaaatgaa aattttaaac tcgtagcact
    10801 ttttactcag cctgataaag ccgtaggtag aaagcaaatt ttaactccaa gtgatactaa
    10861 ggctttttta agtcaaaatt atcctagtat tcctattttt actccaagtt ctttaaaaga
    10921 taaaaatatt ataagagaga ttaaggattt aaatcctgat tttatcgtgg ttgctgccta
    10981 tggaaaaatt ttacctaaag ccattttgga tttagcgcct tgtgtgaatt tgcacgcttc
    11041 tttacttcca aaataccgtg gtgccagtcc gatccaaagt gcaattttaa ataaagatga
    11101 aaaaagtgga gtttgcacca tgctcatgga agaagggctt gacacaggtg ctatacttga
    11161 aagcttagaa tgtgatataa aagataaaaa ttcaagtgaa gtttttgaac ttttagcaaa
    11221 tttggccgct aagctgatcc tctctactct tttaaatttt gataaaatca cccctaaaaa
    11281 acaagaggaa agtctagcaa cgctttgtag aaaaatcaaa aaagaagatg ggcttataaa
    11341 tttgcaaaat gcaagagaac tttatcaaaa atatctagct ttcacccctt ggcctggagt
    11401 tttcttggaa aatggactta aattcttaga acttgaactt gtggatgaat taaaacaaaa
    11461 tgctaagatg ggtgaaattt tagaattaga aaaagaaagt tttttgcttg cttgcaaaca
    11521 aggagttttg cgtattaaaa aacttcaaga aagtggaaaa aaagctcttg atggtaggac
    11581 ttatttaaat ggaaaaaggc ttaaaagtga agatagtttg tgttgaaagt atagactcaa
    11641 ctcatctttt tttatgcaag caaatacgca atggaaagat tgatgaaaat tttgctattt
    11701 atgctttaga acaaataaat ggagttggaa gtagggaaaa ttcttggcag agctctaaag
    11761 gaaatttaca tctttctttc tgtattaaag aagaagactt gccaaaagat ttacctttag
    11821 cttctgtgag tatttatttt gcttatttac ttaaagaagt tttacaagaa aaaggttcta
    11881 aaatttggct taaatggcct aacgatttat atttagatga taaaaaagct ggaggggtta
    11941 taagtgctaa aatttcaaat tttatcatag gcggtatggg tttaaatctg aaatttgcac
    12001 cccaaaatac agctttatgc gatatagaaa tttcgcttaa agatttagtg agtgagtttt
    12061 tgcaaaaagt agaaaaaaaa attttatgga agaatatttt tagcaagtat atgttagaat
    12121 tcgaaaaatc aagaaaattt agcgtccatc atgaaggtaa agttttttca cttgaaaatt
    12181 cttttttgta tgaagatggt tcaattttac taggcgataa aagggtgtat agtttaagat
    12241 gagcgaaatt attacaatag caaatcaaaa aggtggagta ggaaagacta caacagcagt
    12301 aaatttagcc gcttctttgg ctgtggctga aaaaaaagta cttttgattg atgttgatcc
    12361 gcaagctaat gcgactacag gacttggttt taatcgtaat aattatgagt ataatattta
    12421 ccatgttttt ataggaagaa aaaagctttc agatattatt ttaaaaacag aattgccaca
    12481 acttcattta gctccttcaa atataggtct tgtaggtata gaacaagagc ttgctaaagg
    12541 tgaaaataat gagaaaaaaa tgcttcttaa aaatcaaatt caagaagtga ttgatgagta
    12601 tgattttatt attattgatt ctccacctgc tcttggaagt attactataa atgcttttgc
    12661 agcaagcgat agtgtaatta tccctataca gtgtgaattt tatgcgcttg agggtgtagc
    12721 tatggtttta aatacaatta aaattatcaa aaaaactatt aattctaaac ttagggttcg
    12781 tggattttta ccgacaatgt atagctctca aaataatctt tctaaagatg ttgtagatga
    12841 tttgaaacaa aattttaaaa aacaactttt tactattaat ggaaacgaag atgattttat
    12901 tgtgatccct cgcaatgtaa aacttgcaga aagtccaagt tttggaaagc ctataattct
    12961 ttatgatatt aaatcaccag gttctgttgc ttatcaaaat ttggcgtatt ctatattagg
    13021 ataattataa tggggttaaa taaagatagg ggtttaagta gtttaatcag tgatatggat
    13081 actgtttata gtaaagaatt gggttttgat aaaaatcaaa gcactatgat agaaattgat
    13141 caaatttcac ctaatccatt tcagccaaga aagaattttg atcaagaagc tttagatgag
    13201 cttgctaatt ctatcaaaga atttggactt attcagccta ttattgtatt taaaaaaaat
    13261 aataaattta ttttaattgc tggagaacgt cgcttaagag cagtgaaagc attaggaaaa
    13321 aaagaaattc tagcttttat tgctgatatt gatgagaata agcttagaga attggctctt
    13381 attgaaaata tacaaagaga gaatttaaac cctattgagc ttgctaattc ttataaggat
    13441 ttaatgcaag ttcataaaat tactcaagag aatttagcag aacttattca taagtctcgc
    13501 actcaaataa caaatacttt aagacttctg aatttagata ttagaactca agagttgatt
    13561 gcttctggaa aaatttctca gggtcatgct aaagttttgg ttggtttaga tcaaaaagat
    13621 gaaaaaatgt tagttgatag cataataggt caaaaactta atgttagaga tactgaaaaa
    13681 atagttaaaa aaataaaaaa taatgaaagc ttacctaatc aagaatttga agatgaaata
    13741 aaaaaattaa aacaaatact aaatcgcttt ggatttgact gcaaaaataa aaataatgat
    13801 tttgtaattc atttagaaaa tattgataaa attaaaaaat taatcaaaat gcttgaaaag
    13861 ttttaaccaa aatcttagct tttttatggt aaaatagtcc ttcaaaaatt ctaaccaagg
    13921 agaattatgt ttgaagatat gcatccttcc ataatgcttg ctactatagc tatttttttg
    13981 gctatgatag ttattttaaa tagtatgctg tataagccgc ttttaaaatt tatggatgaa
    14041 agaaatgatt ctataaaaaa tgatgagaat aaagtaaaag aaaattctca agaagtttta
    14101 tgtgtgaatg atgaattaga agttattcat attaacacta gagaagaaat tcaaaaaatc
    14161 aaacaaagtg ctatagctgc tgctaaagaa gaggcagagc aaattcttag aagcaagaaa
    14221 gaagaattag aaagaaaaat ggccagcttt tatgcagatt tagctattca aaaaaaagag
    14281 ttacaagaac atttaaacat acatttacct gagcttaagc aagctttgca aaataacata
    14341 aagaaaattt aagaggagag aaatgagtaa gttattattt attatatttt tgctaccttt
    14401 gtatgctttt ggtgcatcaa acggtagtgg agaatatgat attattccaa ggactattaa
    14461 ttttctaatt tttgtgggta tattgtatta ttttgttgca actccattta aaaattttta
    14521 caaaaaccgt attgtaaaaa tttcttctaa acttgatgaa attcaaaaaa aacttttaga
    14581 aagtaaagct aagaaattag atacaatgaa aaaacttgaa gaagctaagg caagtgctgc
    14641 tgccgcttta attacagcaa aaaaagaagc tgaaatctta gttgaaaata ttaagaaaga
    14701 aactcaagat gagttagatt tacttcaaaa acattttgag gaacaaaaag attatgaatt
    14761 tagaaaaatg gaaaaagaat tagtatcaaa tactttaaat gaaatttttt ctgatccaaa
    14821 tatgacatta aaacagagtg aaataataga acttatgatg aagaaggtat cttaaatatg
    14881 gaaaatataa ttgcaagaag atatgcaaaa gcgatagctt caagagctga tataaatgat
    14941 ttttatcaga atttgtgtat tttaaattct gcttttgttt tgccaaaatt taaaaatatt
    15001 atagaatcta atgagattaa aaaagaaaga aaaatggaat ttcttgattc tttttttgat
    15061 attaaaaatt ctagttttca aaatttttta agacttttga ttgaaaattc aagattagaa
    15121 tgcattcctc aaatagttaa agaacttgaa agacaaaaag cttttaaaga aaatattttt
    15181 gttggtattg tatattctaa agaaaaatta agtcaagaaa atcttaaaga tcttgaagtc
    15241 aaacttaaca aaaaatttga tgcaaatatt aaactaaata ataaaatcag tcaagatgat
    15301 agtgttaaaa tagaattaga agaattaggt tatgaacttt ctttttctat gaaagctctt
    15361 caaaataagc taaacgaata tatattgaaa attatctaag gagaaaaagt aaatgaaatt
    15421 taaagctgat gagatcagtt caataatcaa agaaagaatt gaaaattttg atttaaatct
    15481 tgaaattgaa gaaacaggaa agattatttc tgtagctgat ggtgttgcta aggtatatgg
    15541 acttaagaat attatggctg gagaaatggt agaatttgaa aatggtgata aaggaatggc
    15601 cttaaacctt gaagagtcga gtgtaggtat tgttatactt ggaaaaggag aaggtttaaa
    15661 agaaggtgct tctgtaaaaa gacttaagaa attacttaaa gttccagtag gtgaggcttt
    15721 gattggccgt gttgtaaatg ctttaggtga gccaattgat gctaaaggtg tgatcaatgc
    15781 taatgaatat cgttttgttg aagaaaaagc aaaaggtatt atggcgagaa aaagtgttca
    15841 tgagccttta catacaggaa ttaaagctat tgatgcgctt gtgccaattg gtcgtggtca
    15901 aagagagctt atcataggtg atagacaaac aggtaaaact actgttgctg ttgatactat
    15961 tatatctcaa agaggccaag gagttatctg tatatatgtt gcaattggtc aaaagcaaag
    16021 tacagtggca caagtggtta aaagactaga agaacatggt gctatggaat atactattgt
    16081 tgtaaatgcc ggtgcttcag atcctgcggc tttacagtac ttagctccat atactggtgt
    16141 aaccatgggt gaatttttta gagacaacgc aaaacatgct ttaattgttt atgatgattt
    16201 gagcaagcat gctgtagctt atcgcgaaat gtctttgatt ttacgtcgtc ctccaggtcg
    16261 tgaagcttat ccaggcgatg ttttttacct tcattcaaga ttgcttgaaa gagcaagcaa
    16321 gctaaatgat gaattaggtg ctggttcttt gacggcattg ccgataattg aaacacaagc
    16381 aggagatgtt tctgcttata ttccaactaa tgttatttca attacagatg gacaaatttt
    16441 cttagaaact gatttattta actcaggaat tcgtcctgca attaatgttg gtttatcagt
    16501 atctcgtgta ggtggggctg ctcaaattaa agctacaaaa caagtttcag gcacattaag
    16561 acttgacctt gctcaatata gagagcttca agcttttgca caatttgcta gtgatttaga
    16621 tgaggcaagt agaaaacaac ttgaacgtgg acaaagaatg gttgaactct taaaacaacc
    16681 accttattct ccgcttagcg ttgaaaaaca agtagtttta atttttgcag gaaccaaagg
    16741 tttcttagat gatattgctg tttctagaat taaggaattt gaagatggaa tttatccttt
    16801 tattgaggca aaacatccag atatttttga gcaaattcgc tctaaaaaag ctttagattc
    16861 tgatttggaa gaaaaactag ctaaagccat taatgagttt aaagcaaatc atttataagg
    16921 tcttttatgt ctaatttaaa agaaattaaa agaaaaatta aaagtgttca taacactcaa
    16981 aagactacaa atgctatgaa gctagtttct actgctaagt taaaaaaagc agaagaagca
    17041 gctaaaagat caaaaattta tgcacaaaaa atcgatgaaa ttttgagtga aatttcattt
    17101 cagatcaata aaattgttca caatgaagat gatgtgcgtt tatctttgtt tcataaaaaa
    17161 gaacaaatta aaaccgtaga tttaatattt atcactgcag ataaaggctt atgcggtggt
    17221 tttaatatta agactttaaa aacagtaagt gaaatgctaa aagaatatga agcaaaaaat
    17281 attaatattc gtcttagagc tataggtaaa actgggattg aatattttaa ttttcaaaaa
    17341 atagaattgt tagagaaata tttccatctt agttctagtc ctgattatga gaaagcatgt
    17401 gaagtaattc atgctgctgt agatgatttt ttaaatggaa atacagatga agtgatttta
    17461 gttcataatg gttataaaaa tatgattacc caagaactta aaattaatca tcttattcca
    17521 gttgaaccaa agagtattga acagactcat aattctcttt tagagcttga accagaagga
    17581 actgagcttt tagaagattt aatgaaaaca tattttgagt ataatatgta ttatgcgtta
    17641 atcgattctt tggcggcaga gcatagtgca agaatgcaag ctatggataa tgcaactaat
    17701 aacgcaaagg caagagtgaa acagctaaat ttagcttata acaaagcaag acaagaatct
    17761 attaccactg agcttataga aattatcagt ggtgttgaat caatgaaata gtaaatttta
    17821 aggagaagat aaataatgca aggatttatt tcacaggtat taggtccggt tgttgatgta
    17881 gattttaacg actatttacc tcaaattaat gaagcaattg ttgtaaattt tgaaagcgaa
    17941 ggaaaaaaac ataaacttgt tttagaagta gcagctcatt taggagataa tagagttaga
    18001 actattgcta tggatatgac agatggtttg gtaaggggct taaaagctga ggctttaggt
    18061 gctcctatta gtgttcctgt tggtgagaaa gttttaggaa gaattttcaa tgttactgga
    18121 gatttgatcg atgaaggtga agaaatttct tttgataaaa aatgggcaat tcatagagat
    18181 ccaccagctt ttgaagatca aagcacaaaa agtgagattt ttgaaacagg gattaaagtt
    18241 gtagatttac ttgctcctta tgcaaaaggt ggtaaagtag gtctttttgg tggtgcaggt
    18301 gttggtaaaa ctgttattat tatggagctt attcacaatg ttgcatttaa gcatagcggc
    18361 tattctgtat ttgcaggtgt gggtgagaga actcgtgaag gaaatgacct ttataatgaa
    18421 atgaaagaaa gtaatgtttt agacaaagtt gctctatgtt atggacaaat gaatgaacca
    18481 ccaggggcaa gaaatcgtat tgctttaaca ggtttaacaa tggctgagta ttttagagat
    18541 gaaatgggtc ttgatgtgct tatgtttatt gataatatct ttagattttc acaatcaggt
    18601 tctgaaatgt cagcactttt aggaagaatt ccatcagctg tgggttatca accaacctta
    18661 gcaagtgaaa tgggtaaatt ccaagaaaga attacttcaa ctaaaaaagg ctcaatcact
    18721 tcagttcaag ctgtttacgt tccagctgat gacttaaccg acccagctcc agcaactgtt
    18781 tttgctcact tagatgctac aacggtttta aatagagcta ttgctgaaaa gggtatttat
    18841 cctgcagttg acccacttga ctcaacttca agaatgcttg acccaaatat cattggagaa
    18901 gaacattata aagttgctcg tggtgttcaa tcagtgcttc aaaaatacaa agatttacaa
    18961 gatatcatcg ccattttagg tatggatgag cttagcgaag aggataaact tgtagttgaa
    19021 agagcaagaa agattgaaaa attcttatca caaccatttt tcgttgcaga agttttcaca
    19081 ggtagcccag gaaaatatat aagccttgaa gatacaatag caggatttaa gggaatttta
    19141 gaaggtaaat atgatcattt accagaaaat gctttctata tggttggaaa tatagatgaa
    19201 gctattgcaa aagcggataa attaaaaggt taatttatga acgatttgat taatttcgag
    19261 atagttacgc ctttgggtgt aatctatcaa ggagaagtaa aatctgttac tttaccgggt
    19321 agtgaaggag aatttggcgt gcttaaagga catgctgctt tggtttcttc tttaaaatct
    19381 ggagtaattg atattgaaaa agctgattta aaccatgaat taattgctat tgatgctgga
    19441 catgcaaagg tagatgaaga taagatttgc gtgttagcaa agggtgcggt ttgggtttgt
    19501 ggaagtgatg aaagtgagat tgaaaaaaat cttgctcaag caaaagattt gattaaatct
    19561 atgagttctg ataatgcagc tttagcagca actttttcaa aacttgataa tgtaaggatg
    19621 cattaatgaa ttttgaagct atattttatt ttttcaatag ttcaagtatt attacttata
    19681 tagttttatt atggctttct ttatatttta ttttagcatt tagtattttg tttgctagat
    19741 tgacttattt ggctacatgg agaaataaag aaaaagaaag tttagaaact ttgctcttgg
    19801 gtgagaagga tttaagtcgt actgattcga ttttaagaaa atgcaatgat acaacttcaa
    19861 atcatttaga aatctataaa aatttagcaa gtcgccgcgc ttctgctgga cttacttggc
    19921 ttagtattat tgcttcaact tcacctttta taggtctttt tgggacagtt atttctatac
    19981 ttgaaacttt tggtgggctt ggaactcaaa attctttaag tatcatagct cctaaaatca
    20041 gcgaggcttt agttgctaca ggttgtggta ttttagtagc aattcctgct tatacatttc
    20101 atctcatcat taaaagaaaa gctttcgaac ttttaagcat tattgatagc gagattaaag
    20161 ttataagttc gagtaaataa ggttaaaaat gccatttgat gatgaaaaac ctgagcttaa
    20221 tatcacacct ttagtagata ttatgcttgt attgcttgcg attttaatgg taacagctcc
    20281 aagcattact tatgaagaaa aaattaatct tccacaaggt agtcaaaaaa atactagcgc
    20341 tccaactgtt aagagtttaa ttattagtat taatgcaaaa aaagaaattt ttttaaatca
    20401 agaaaaatac gattttataa gttttgctga caatattgct caaagaaaag cacaatttaa
    20461 taccgaagat ccggttttta tacgcgctga taaaagctta aaatatgacg atgttatttc
    20521 agtcttaaga agtgtaaaaa atttaggatt taataaagtt gctttacaga ctgaataatc
    20581 atgaaaaatt atggtttgag taatttaaat tcgtttttac ttgctttagc aatatatatt
    20641 agtatagtaa ttcttgtttt ttttagactt gtaagcgagg ttgaacctgc tatacaatat
    20701 accgatataa aagatagttt tgtagatatt gaacttgctg aaccatcaaa acaagttatt
    20761 actcaaagca acactcctaa agaaatacaa aaaccaacag agcaagttga tatagaaaag
    20821 ctttttgctc agactacaaa taaaacagtt aaaacagaag atattgacca aaaggcgagt
    20881 aattttaatg agctttttgg aaatatcaaa gaaatacaag aagaaaagac tacaaaaatt
    20941 caatcaagtg ctaaatcagg agcttctagt gccccaaaac ctcaagcttc tgaacttgta
    21001 aaacaactta atgatagctt gcttcaagaa gaaagttcaa cacaaggtga aagtacaaag
    21061 gcacaaaaaa ttggaattta tgatgaattt ttagggaaag tcgtgcgtat tatcactcaa
    21121 agatggactc agtattatcc aaatagtgaa aaaatttctg ttaaggtaaa aatttttatt
    21181 gatgaaaatg gaaaatttgg ctatacttca gttgaaaaaa gtgggaatcc tttatatgat
    21241 gctaaagtgg ctgaattttt agaaagtcaa aaaggtaaat ttattactta tcctccgcaa
    21301 aataaaaata taagcattac catgaattta agagatgaag caaaagttaa aaatgattag
    21361 gagaacaaaa tgaaaaaaat tgtagcaatt tttttagtct ttttaggaag tctttgggca
    21421 gaagatccgg ttattgatgt tgttaattct ggtgtggttt taccaaagat tatcgttaaa
    21481 gataattcaa atttaagtga tgagaattta aagaaaagct tttataatat cattgtgaac
    21541 gatttgaaag taagttcaaa ctttgaagtt gttgctaatg caactgagac aagtaattat
    21601 acttttgaat acactttaaa taaaaatggt aacactttga gtttaaatgt aaaaataaaa
    21661 gctggcggtt ctgataagtc agagcaaact tatactttaa atggtttaga gcaatatcca
    21721 tttttggcac ataaaagcgt caaagcttct gtaaatgcgt taggacttgc acctgttgat
    21781 tggatggatc ataaaatttt gatcgcgaga aattctagct ctaaaaaaag tcaaattatt
    21841 atggctgatt atactttaac ttatcaaaaa gttattgttg atggtgggct taatttattt
    21901 ccaaaatggg gaaataaaga acaaactcta ttttattata cagcttatga tcatgataag
    21961 ccaactttat accgttatga tttaaatacc aataaagcta gtaaaatttt atcaagtggc
    22021 ggtatggttg tagcaagtga tgtgagtgta gatggaagta aactacttgt taccatggct
    22081 ccaaaagatc agcctgatgt ttatttatat gacttaaata ccaaaaatct aacacaatta
    22141 actaattatt ctggtattga tgttaatgga aattttattg gctcagatga tagtaaagtg
    22201 gtatttgtaa gcgatcgttt aggatatcct aatattttta tgcaagattt aaatagcaat
    22261 agtgctgaac aagttgtttt tcatggtaga aacaattcgg ctgtttcgac ttataaagat
    22321 tttttggttt attcaagtcg tgaaccaaat caagcaggtg tttttaatat ttatttgatg
    22381 tcaattaata gtgattatat tcgtcaactt acagcaaatg gaaaaaattt atttccaaga
    22441 ttttctagtg atggtggaag tatagtattt atcaaatatt taggtgcgca aagtgctttg
    22501 ggtgttattc gtgtaaatgc aaataagact ttttattttc ctcttagggt tggaaaaatt
    22561 caatcaattg attggtaaaa atttcaattt taggttaaaa ttaattaaaa attagatata
    22621 ataataagaa tttattaact ttgaaaggtc ataaatgaaa aaaattcttt ttacttcaat
    22681 cgcagctctt gcagttgtta ttagtggttg tagcacaaaa agcactagcg taagcggtga
    22741 tagtagtgtt gattcaaatc gtggttcagg tggaagtgat ggttgggata ttgattcaaa
    22801 aatttctcaa cttaatgata ctttaaataa agtatatttt gattttgata aattcaacat
    22861 tcgtcctgat atgcaaaatg ttgtaagcac aaatgctaat atttttaaca ctgaagtaag
    22921 cggtgtaagt attactgttg aaggaaactg cgatgagtgg ggaaccgatg aatataacca
    22981 agctctaggt ttaaaaagag caaaagctgt aaaagaagct ttaatcgcta aaggtgtaaa
    23041 tgctgataga attgctgtta aaagctatgg agaaacaaat cctgtgtgta ctgaaaaaac
    23101 taaagcttgc gatgcgcaaa acagacgtgc tgaatttaaa ttatcaagat aattaatgaa
    23161 aaaaatattc acagtagctc ttcttggagc tactttactt tatgcagaaa gctcagcttt
    23221 tggtgcagga gatataacaa gcaattcttc ttatggttta acttcaaatg aaaaattatt
    23281 taaagaaaag ttagataatt taaataatga aaatatacaa acaaatgcta gaattaatga
    23341 aattaacgaa agaatcgagg gtttacaaag cactttagaa ggtataaatt ctcaatatgc
    23401 caaatcaaat tctagattaa gtcaagttga agagaataat caaaatattg aaaataattt
    23461 tactagtgaa attcaaaaat taaaggctta tgttgaagaa agtagaaaaa ttcaagaagc
    23521 taataataag caagtaaaaa aagttttagc cgaacttagt tttttagtag atgctattaa
    23581 tgcaaattat gtttctaaaa acgaattaaa tgatgcaaat ttaagcgtta aaactattac
    23641 acctagtgtt gttgtttcaa ctacagattc aaatagtacc attgaaaaca ataatactca
    23701 aaatacccaa gatgataaag caaaacaaat tgatgaatct tggaaaaaga aaaaaaataa
    23761 tgaaatttta gaattagcga taaaagatgt tgataaaaat gcttttgaag attccaaagc
    23821 aaaattaaat tttctcataa caaagcagta taaacctgca agagcaaatt tttggttagg
    23881 ggagatcgag tataaacaaa aaaattataa caatgctatt gtttattata aaaaaagttc
    23941 ttctttgagt acaaaaggag attatttccc aaaactttta tatcatactg ccatttcatt
    24001 ggataaaaca ggtgatacaa aaacagcaaa tggtttttat aaagctttaa aaactaatta
    24061 tccaaattca cccgaagcaa aagcttcacc taatagaaaa taaattaagg agataaaatg
    24121 gctatagaaa aaaatagtgt agtttcaatg ttttatgagt taaaagatgc aaatacaaat
    24181 gaagttttag aatcaaattt atattctcaa cctatttctt ttattttagg caaaggtcag
    24241 attttagaaa gcttagaaga agaagtgatg aagcttgatt gtcctagcaa tgctgatgtg
    24301 gtaattaaaa aagaaaaagg tttaggcgaa tacgatgaaa atgccgttca aactttacca
    24361 aaagagcaat ttgcaggtat tgatttaaaa gtaggtatgg agctttttgg cgaaggtgaa
    24421 aatggcgaaa ccgttcgtgt aactgtaaaa gaaattggtg aaaatgatgt gacaattgac
    24481 tataatcatc cttatgcagg tcgtgatttg cttttttctt taaatatcgt agatgctaga
    24541 gttgcgagtg aagatgaaat tcttacaggt attatcgcag gaagtcatag ttgtggttgt
    24601 ggaagcggac atggacacga tcatcatcac ggacatggac atggtggcgg cggttgctgt
    24661 ggtggcagcg gttgcggttg tcattaatga atgctgcgtt tatatttcca ggtcaaggct
    24721 ctcaaagtct tggcatggga aaagattttt atgaaaactc tataaaagcc aaagaactcc
    24781 ttcaaaacgc aagtgatttt tgtaagattg attttaaaca tttgcttttt gaagaaaacg
    24841 aaaaactcaa tcaaagtgaa tttactcaac ccgccatcgt tttaaattcc ttaatggctt
    24901 atagtgtttt acttgaaaaa aaacctgatt taagttcgaa atttgcttta gggcattctt
    24961 tgggagaatt ttcagcctta gctgtcaatg gtgcttttga ttttttagag gctctttctt
    25021 tggtcaataa aagagggctt ttcatgcaag aagattgtgc aaaagttgaa gcaggtatga
    25081 tggtggtttt ggggcttgac gatgaaaagg ttgaagagct ttgtcaaaaa gcacaaaaag
    25141 aaaacaagca aattttcgct gcaaattata actgcgatgg acaaatcgtt gtagcaggtt
    25201 taaaacctga tttagcaagt tatgaaagtg tatttaaaga agcaggagct aaaagagcta
    25261 tgcttttaaa tatgagcgtg gcaagtcatt gtcctctttt ggaaaatgct tcagctaagc
    25321 tttgtgtgga gcttgaaaag gtgttaaaac caaattttaa agccgtaatt tctaatgcaa
    25381 atgccaaaat ttatacaaga aaagaagaag cccttgagct tttaaaagca caacttatct
    25441 ctcctgtgct ttataaacaa agcattaagg catgtgaaaa tgaagtagat tatttcatag
    25501 aatttggtgc aagcgtgctt aaaggtttga acaaaaaaat cacttcaaaa gaaacttatg
    25561 ctttaacaaa tatgaatgat attgatgaat ttttaaaggt tatatgatga aaatagcaat
    25621 tttaggagcc atgagtgaag aaatcactcc tttacttgaa acacttaaag attatacaaa
    25681 agtggaacac gctaataata cttattattt tgcaaattac aaaaaccatg aacttgtttt
    25741 agcgtattct aaaattggca aagtaaattc tactcttagt gcaagtgtga tgatagaaaa
    25801 atttggcgca caagtgttgc tttttacggg cgttgcaggt gcttttaatc ctgaacttga
    25861 aatcggcgat ttgctttatg cgacaaaatt agctcaatac gatcttgata ttaccgcttt
    25921 tggtcatcct ttgggttttg ttccgggtaa tgaaattttt atcaaaactg atgagaaatt
    25981 aaataatctt gctttagaag ttgctaaaga attaaatatc aaacttcgtg caggtattat
    26041 tgcaacaggc gatgagttta tttgtgatga agcaaaaaaa gcaaaagtta gagaaatttt
    26101 caatgccgat gcttgtgaaa tggaaggtgc aagtgtggct ttggtttgtg atgctttaaa
    26161 agtaccttgc tttattttaa gagctatgag tgataaagca ggggaaaagg ctgaatttga
    26221 ttttgatgag tttgtgatca attcggctaa aatttcagct aattttgtgc ttaaaatgtg
    26281 cgagaaatta tgataaatct tagcaagaaa cttatacgtc aagtcgcaca agccaatgct
    26341 aaatttggac ttattaaaga tggagataga gttcttttag ggcttagtgg tggaaaagat
    26401 tctttagctt tggttcatct tttaaatcgt atgcaagcac atgctccttt taaatttgaa
    26461 cttgaagcaa taactttaag ttatggtatg ggtgaggatt attctcatct tcatgcacat
    26521 tgtgaagaac acggtattaa acatagtgtg cttgattcaa atatttataa agtttcaggc
    26581 gatactataa gagaaaattc gagtttttgt agttattttt caagaatgcg tcgtggagct
    26641 ttatatactt acgcccttga aaaaggtttt aacaagcttg ctatagcaca tcatttagat
    26701 gatgcggctg aaagcttttt tatgaatttt atttataatg gagctttaag aaccttagcg
    26761 cctatttatc aaagtaaacg tggtataact gtgatacgcc ctttgatttt tgtgcgcgaa
    26821 agacagctta gggataatgc tacgcaaaat gaacttagtg tgataggaaa tgaattttgc
    26881 cctggtatga agttgagtga aaaaaatgta aaatttccac acgccagaga agaagccaag
    26941 cagcttttag caaatttaga aaaagaacac cctaagcttt ttacaagttt aaaaaccgct
    27001 tttgccaatc tacacacaga gagtttttgg cttcaaaagg cataaaatta tgaaaaaagc
    27061 ttttgtttta gtagattatc aaaatgattt tattgatgga agcttaggtt ttaataaagc
    27121 tttaaagatt aaagaaaata ttcttaaagc cttaaatcaa atcgatttta ataacacgca
    27181 tttgctttta acctatgata cgcatgatga gcattatcta caaagtaaag aaggtttaaa
    27241 tttacctgta aaacattgca ttaaagagag tttgggttgg caaatgccaa aggaatttga
    27301 acctttttta caaaaagctc ataaaatttt ttataaaaat acttttggta gcttagaatt
    27361 agctaatttc atacaaaaaa gtgattatga agaacttcat tttgcagggc ttgtttctca
    27421 tatttgtgtg ttttgtaata ttattttagc ttttggtgct aagcctaatg caaggataat
    27481 tttacaccaa aatttaagtg caagttttga tgaaaattta gaaaaatccg cttttgatat
    27541 acttagggct tatggtattg aaattgttta atgcaaggct ttatacttca tactcaaaaa
    27601 gttaaagatg aggatttgat tgtttatatt ttaagtccta aaatgcttat taaggcttat
    27661 cgtttttatg gacttagaca ttctagtatt ttaagcggct ataaaatcga ctttgcttta
    27721 gaagaaaatc ctagtttttt accaagactt aaagatgtat tgcatttggg atttttatgg
    27781 attatgcaaa gggataaaat gcttatttgg caagaattta tccgtctttt atataggcac
    27841 ttaaaagatg tagaagagct tgatagtttt tattttgatt tacttgatga gtgtgtgaaa
    27901 aggtttgaaa aacaaaatcc aaagcgtgtt attgttgatg cttatttaaa aattttggaa
    27961 tttgaaggaa gattgcataa agattttttt tgttttgcct gtgatgagaa aattcaaaat
    28021 tccattacat tgctaagggc ttttttacct tcgcattctc aatgtgcttt aggatttgag
    28081 tttgaagaga aaaaactaaa acaattttat agtagtaaaa attgtgcgat ttttgatgat
    28141 gaagaaatag aaaatttata tcatttgatt aaggaaggtt tatgatatta agtgatgaaa
    28201 aatgtgattt tttagaatct atagcaagtt ttttaagtcc taaagatgtg gagcttgtct
    28261 ttgtggatag taaagaaatg caagaaatta acttagagca aagaaaacaa gataaaacca
    28321 ctgatgtact ttcttttcca cttgaaaata tcgatgagag tttgcctttg ggttctgttg
    28381 tgatcaatgt ggatttggca aaagaaaagg ctaaagagtt agggcatagc tatgaagaag
    28441 aaataagctt gctttttatc cacgctatgc ttcatttgtt aggttttgat catgaaaatg
    28501 ataatggaga aatgagagaa aaagagaaag aacttataga gcattttaat ttacctaaaa
    28561 gtttgattgt aaggactttg gaagattaag taagattttt ttcaagggct agaagacttg
    28621 cgctttatat tttaaatata tgagtaaaaa tattaaaaaa aatcattttt gccgatttac
    28681 tttagaataa aatttattcc aaggtgataa agatgatagt atttcctcta agctctttta
    28741 atagatattt tggaaacaat cctttgcaaa cacttaccaa aataagagat gaaagtattg
    28801 aaaatggaaa tcccgagctt acaaaaaaac aaagagaaga attaggtaat gatttgatag
    28861 atttgtataa gatttctaaa aaattcagcg ataaaataga attagtcgag ggttcaatag
    28921 aagataagct tagaaacaat gaattaccag aatcagaagt taaaaattta tttcaatgga
    28981 tggatgaaaa tgctaaacac cctcgttgga tgcatattga tggcgtgagt tatgatgaag
    29041 cttatgttaa aatttttcac acaagcaaaa gtatagatga atttaaagaa aaatatcttg
    29101 agcttcaaaa aaaatatttt gttgatttta acaatattga ttcatcgcag aaaaaactgc
    29161 aagaaacttc agaagaagac aaaaaagctt tcaaacctat acaagtagaa agtaaaagcg
    29221 aaacctacaa agatgataat aaaatgaatg agcttttaag aaaactacta gaaactaaat
    29281 ttggcacaag cgatgagcta gaaattcttt ttggtatgaa ttttagcaat gataatgcag
    29341 gggaatttaa taaaattctt tctcaaaaca cttcagcaaa aattatagat attaaggctt
    29401 aagatttttt aaattataaa aatcaatcaa gttaaactaa aaaattcttc tatttttttt
    29461 cgcatttctt cgacattgtc gatacgatta acggtatctc taaaggctga agcgtcttta
    29521 tgccctttag aatactcgtg taaatgcttg cgaaatatac ttacgccttg atctttgtag
    29581 tgttttatca tttcatcaaa atgagtgagt atgatttctt ttttgagttt ttcatctaca
    29641 cttttaccgc ttttgatttc ataaaatatc caaggatttc ctacgcttgc acgccctatc
    29701 atgagtccat cacattttgt gattttataa acttctttag cgttttgtgc gttaatatcg
    29761 ccatttgcaa tcacaggaat tttcacactc gctttagcac tagcaatgga tccataatcg
    29821 gcttttccgc tataaagctg ttttcttgtg cgtccgtgga tacttataaa atccaccccc
    29881 aagctttcac aaattttagc cattttttca ggatattttt cattaaatcc tagtcgaaat
    29941 ttcacacttg taaggctttt tttattgttt tctttaatca ctcctacaag atttttaaaa
    30001 agctctaaat tttctagcaa agcactgcca gcacattgtt taacaacttt atttacaggg
    30061 caaccgcaat taaaatcgat cccatctaca aaatccattt catttagcat ttgcactgct
    30121 ttttttagca cttctttatc tccacctgca atttggacta tatagggatt ttctaattca
    30181 gctctttcta gcatatgtaa agttttagaa ctttcataaa ctaaggcatt agaacttatc
    30241 atttcactta tggtaatatc agcaccaaat ttttttacta cattacgaaa aggcagatct
    30301 gaaaaacctg ccataggggc taaaaacagg ggttttttgc taaaatctat cattgtatga
    30361 gttgatttag atcgattttg atattttttt cacgcaaggc taaaaaggct ttaaaatcat
    30421 taaatttttt atcatcattg tgaatttgtt ctcttaactc atctaaaagt ccaaattcag
    30481 ccaaaagata taaatatgct cttaaagctt cgcttttttc atttttaatt ttgttaaaaa
    30541 ttcctaaaat agcatcagga tttaaaagtt tagtacttag ttttgctgca ttaagatagt
    30601 ctttttcgct taatatgttg tgtgaaagta aaacttcata ttctgctaca ctaagttcta
    30661 aatttccttc tttaaaacgc ttgataagtg tgagaacttc agaaggcttt ttagggattt
    30721 ttacattttt aatttgctca taactagctt tttctataag agtgttaaaa gcaatttctt
    30781 caaattcatc tttgatttca ttaaggtttt taagtttgtt ataggcataa tttgcatcat
    30841 ttttgagatg atttttttca ttttgcaaat ataaaacatt gttattttcg agtttaaatt
    30901 tgctaaggtt aaaaaattcg tttttattta aaccatcaat aagatctaaa atttcattga
    30961 ttttatttga gtgtggaatt ttttcatgtg tttttatggt tttaaaaagt tgtgctacag
    31021 atctaaattc ttttgtttga aaagtggttt taagatcttt ttcaaggagt aaatcttgag
    31081 tataagcttc aaatttagct gcatctttaa aaaaatgctt aaattttaaa taacgcaaaa
    31141 atccataaaa tgctatgtgt aaaacggcta aaatcatata aataaataaa ggaataacaa
    31201 gccatatcat aataggtagt tcaaaggtat aagtgctgat atttagagta tagcttccta
    31261 gttctagatg ccaagcaaag gcaaaaataa gtgctatata aataaaactt gcaagtaaga
    31321 agagtttaat tttcatgttt ttttccttgt tctgcaattt gacggcaagt gatacaatat
    31381 cttgcgtgag gtttgacttt tagtctttga gagtcgattt catcatcgca agattcgcaa
    31441 attccataag tgccgttttt gattttatct aaagaatctt cgatttctat aagttcttct
    31501 ttgagattgg tgctgatagc aaagtcaatt tgagagcctg tttctatgac agaaaaatct
    31561 acactatcgc ttgggacgct attgtgaaga gcttcgattt catttgaatt gctttgcaaa
    31621 ttttctaaga tagctttttt tctttcttct aaaatatttt tgaaattttg tatttcattt
    31681 tttttcattt taaaactttc tatttgtgat aagggtgatt gttgttgatg caaaatgcac
    31741 gataaatttg ttctaaaagt aaggttttaa caaattgatg tgctaaagta agtttgctta
    31801 atgatagtct aaaatccaaa ctttgattaa attcttctct taaaccataa gcacctccta
    31861 taaaaaaact taattcattt ttatcttgga tgagttttgc aaattctata cttgtaagat
    31921 ctttcccttt ttcatcaaga gcgatacaat agcctttttt ataaggcata aaagcttctt
    31981 catagctttt ttttgcttct atggcattta aattttgagc taaggctatt tttttattaa
    32041 aaacatttat ttcttttaaa gtggcgtatt tggagatgag tttagagtat ttctcactac
    32101 aagttttaaa ttcatcattt ttttgaatac aaaagatatt aacttgcaaa ttattttcca
    32161 ctaaaaaatt ttagtacatc gctaagatat tgtttttgct ctcctctttc aactatggca
    32221 tctataagtc catgttctaa caagaactct gctttttgaa aaccttcagg caaatctgct
    32281 cctatagttt gtttgataac tcttgcacca gcaaaaccta ccaaagcttc aggttcagcg
    32341 atgattaaat ctccaagcca agcaaaagaa gcacttaccc cacccatagt aggatcagtt
    32401 aaaatgctaa tataaggaag tttttctttg ctaagaagtt taagtgcggc actagttttg
    32461 ctcatttgca tcaaagaata agtgctttct tgcattctag ctccaccact tgcacttacg
    32521 atgacaagag gggttttact tgtgatggct ctttgtatag ctctaacgat tttttctcct
    32581 tcaacagaac ctaaagatcc gcccataaaa gaaaaatcaa atacaacaag ttgggttttt
    32641 aaaccattga tttcacattc tccactgatg acagaacttt ttctacctgt tttactttca
    32701 ccttcgctaa ggcgtttttt ataggatttg ctatcaacaa attttaaagg atctatagct
    32761 tctaaatttg catcatactc aataaaactg ccttcatcgc ttaaaagttt aatacgttca
    32821 tcagctgaaa ttctcatgtg ataattgcat ttaggacaaa cattaaaaca agattctatt
    32881 tctttataat acatcaaagc atgacaactt tggcatttta cccagtgatt tggagcttct
    32941 ttaatactag gttgttgtct tcttattttt gaaaaaatat ctgcaaaatt catatattca
    33001 cataattatt ttttaaaaat tctaagatta tatcaaaaat ttttttgtct tggcttagga
    33061 gaaggaaatt ttcatttttt tctatatata aattttgatg aattgctaaa gcagctgctg
    33121 tatcaaaaat tcgtgttttt ccaagaatta atacaaaact aaaatacgaa gcataagcaa
    33181 gacttaaggc tgttgcaccc aaagagcgaa attttaattg attttttgtt aaaaaatcga
    33241 gaagttctgg ataaaatgaa attttttcaa ctatacctat tttaggaaat agattaggtg
    33301 ttaagggtga gtattttgga tcggaaagat tagatttaaa agcttgattg ttcttaaaag
    33361 caaaaatttc ttgactgaca agattgcaaa caaaagcact ttttgcctga tctttttcca
    33421 taagagctat agaagtccca taaaatggta ttttagaaac aaaatttgaa cttccatcca
    33481 aaggatcaag aatcatttgt tttgggctag cttttccgat caatccgctt tcttcagaaa
    33541 aaatttgtcc aaaacaacta agatatttta tgaaaatttg ttcacatttt aagtcaagct
    33601 catagccttg atttttatca tagcctaatt tagagcaaag tttaagatca ttttgtggga
    33661 tattgtttag atacttgcgt atttgcaaat ttgcattcaa gcaagcatct aaaaattctt
    33721 tcattaaaag cgtgttccaa gattaaattc aaaactatta gtatcatcac cttttttatc
    33781 attaagaggt ttggcaaata caagttgtaa aggtccaata ggtgtaatcc attcaatgcc
    33841 tatacctgta ctcattcttt ttatttcatc taaattttta cgccctatca taccataatc
    33901 aaaaaacacg ctaccacgaa gtttgattct atcaatcaaa ggaaaactaa gttctacgga
    33961 attggcaaaa gctatggttc cgcctatttc atctccccat tgatttttag gacttactgt
    34021 tctgctttca aaaccgcgta tcgatctaat accacctaaa taaattcttt ggttaattgg
    34081 taaataacct tcatcccata ctttataaaa actcgcttta tagcgataaa taagatcata
    34141 tcctatatag tcttgcaaac cttgataaaa gttaaattta gagcttgatg aaataaattc
    34201 ttgatctccg ccaagtccag cgtattctaa actagttgaa gcaataatac ctgatcgtgg
    34261 cagataataa tcatctgtat tgttaaaggt gattgctgga gttatagagc ttttaatact
    34321 tttgccaagt tcatatcctg ttcttaaaag agttggactt aagtgatata tatcgctttg
    34381 ttcaagatta taagttaagc ttacattata gtatcttgca aattggcgtc caactgttat
    34441 atcaaagccg taattttttt ctgaataatt atcccattca tagtcatttg aataaagtgt
    34501 tccacccaga ctatattgac tatcaagaac gcgtggattt acgagactaa tccttcccga
    34561 taaagtatca tcgcttttat ctacgcttac agagcttttt attcctgaac caaagatatt
    34621 tgtatccgat aaagaagcgt taagcaaaat accatcgctt gatccatagc caatgcctcc
    34681 agaaatagct cctgtagaag cttctttaac atcaacaatc aaatcaatat gtgtatcatc
    34741 aactttttct tctttgatat ttacatcgtc aaaataagaa gttcttttta aagcattttt
    34801 tgactcgctt aagtctgttc tattgtataa attaccttct gttatatata attctcggcg
    34861 tatgacgcga tctacggtgc gtgaatttcc tgaaataata acatttctta tataaacttt
    34921 atcgtgaggg attactttaa atacaacggt ggcttcttga gtttgatcat ttttttgaat
    34981 atcaggatag acttctacaa acgcataacc caaatcagca ctttgtgttt ctatggtttt
    35041 aacatctttt ctaatgtctt cgatattgat agttttgcca gcgcttgatc ttaaatcttt
    35101 tacggtttgt gcattttgct tatcatcaaa taaaggattt tctatgctta tacttttaat
    35161 tttataaggc tttccttctt tgataaaata agtcaaattt gcttgataag tatctgtgta
    35221 ggttttaaga taaggggagg atacttgaac atctaaatat ccttttttca tatattcatc
    35281 agcaattctt gaactatcgt tactaagttc aaaaactttt aattttccat cattgcgtcc
    35341 ccacatccat cccataaatt ctttttcttt gttaacaaca gcaggttcta tatcagaata
    35401 tgaaaatttc tttgctccac ttaaatgaac attatcaata atgatatttt caccacgatt
    35461 tactataaat tcaagctcta gtccatcagt attttctaaa gtcttttttt tgtattctac
    35521 aatagtatca aaataacttt ttgcttcata ataagcttta atgcgttcaa tagcttcttt
    35581 tatacttcct tcatcaagta gtgtacctct tttaatccct aaaatacttt caacttgttt
    35641 tctatcattt gaagctatac ctgtgatagt aacctttgct atagttggtt tttcagtaac
    35701 tataatttcc aaaattccat tgttgttttc tactgcaata ttttcgaaat aattttgttt
    35761 ataaagatta agaatagcag tgttgatttt tgcaggattt atttcctcgc ctattttaag
    35821 ccccgtgata tttatagcgc ttgtgttcga taaatgattt aatccgataa atttaatatc
    35881 tttaatggtt gctgcattgg ccatagcaac taaagcacaa atactaataa gatgtttttt
    35941 cattgatttt ttacctaaag ctttattaaa agctgtataa tagcaaaaaa aatttaacaa
    36001 aaaaactaag gtagaaagta tgaaaatagc aattataggg cttgggctta tgggtggatc
    36061 tttagggctt tgtttgaaag aaaataagct tatttcttgt gtttatggta tggatttaag
    36121 caaagaaaat gaaaaagatg ccctgcaatt aggtcttatt catgagctta tagaatttaa
    36181 agatttagct ttatgtgata tgatttttgt cgcaactcct gttgatgcta ttatagaaat
    36241 tttgcaaaag ttagttgatt tgccttctaa tgtaacaatt atagagcttg gaagtacaaa
    36301 aagaaaaatt atagaaagtt tgcctaagaa tttaatcaaa caaactcttt ttgctcatcc
    36361 tatgacagga actgaaaatt caggtccaaa agcagctttt aaagagcttt ataaagatgc
    36421 agtttgtgtt ctttgtgata gtgaaatagc tgatgattta catcaaaaaa gagcggtaga
    36481 aattttttct catttaggga tgaaaattgt ttttatggat agtaaagccc atgatcatca
    36541 tgctgctatt atttctcatt tgcctcatgt tataagtttt tctttggcaa attttgtaat
    36601 gaaggaagaa gataaaagaa atattgttca tttagccgga ggatctttta aaggtatgag
    36661 cagaattgcc aaatcatcgc cacaaatgtg ggaaagtatt tttttacaaa ataaagataa
    36721 cttattaagt tctattgatt tttttcaaca agaattagag agatgtaaac aaatgataca
    36781 attagacaaa aacgatgaat taagagaatg gatgaaacag gctaataccc taagagaaat
    36841 tttataaatt tgctagatat ttactgaaaa tataatagaa tttatattaa aagcaacaaa
    36901 aacattgaaa atttttaagg aaggttatgg caaaaagaaa aggcaaaact tatttatctg
    36961 ttttaatttt agttttaata gcaattttga ttttttttat ttcaagatta agtatttttg
    37021 aaaaaaatcc tcctcaaatt ttaatgccag atgttgtata tactgatctt aaaaaaccta
    37081 ttttagtgca tattaaagat gatgaaagtt ctatcaaaaa cgtacaaatt atattgcata
    37141 aagacgacaa tactagtgca atggttatag cagatgaaaa gatttctaat ttaaaagata
    37201 ttaccttaca agttgctttg ccaaaatttg gttacaaaga aaatgtaaaa tcttttgttt
    37261 tggaggtgat agctaaagat tctagttttt ggaatttttt tagtggcaat gaagcaagaa
    37321 aacaaattgc ggtattagta gataatacgg ctccaaaaat caatatcata agcaattctt
    37381 accaaatcga gcaaggtggt gctggggcag ttgtttttaa ggctgatgat gctaatttag
    37441 ataaggtgta tatagaaaca aataaaggta aaatctttaa agccacatct tatgtaaaag
    37501 aaggatatta tgcggctttg attgcttggg atgcaagaga tgaggaattt cgtgcatttg
    37561 ttatcgctac ggataaagcg ggcaatattt caaaagaacg tataaggtat tattttgtta
    37621 atcgtaaata tcgtgtttca aatatcaatc tgacggataa atttttagat ggaaagattg
    37681 agaatttagc aaatcagtac gctccaaaag ataataatct caatcgttat gaaaaattta
    37741 agtttgtcaa tgaaacttta agaaatagca atgaaaaact tatccatgaa atcacttcaa
    37801 aagtacctga ggaaaaaatt gataattttg atttgaattt atttttacct cttaaaaatg
    37861 gtatgaaagt agcggatttt gctgatcata ggtattattc ttataatggg caatttgtga
    37921 gtgattctta tcatatgggg cttgatctag caagcgtagc acaagctcct atcataagta
    37981 ataacgcagg caaggttgtt tttgctgctg aaaatggaat ttatggttta aatttaattg
    38041 tttatcatgg ttttggagta tatagtcttt atgggcactg ttcttctaaa aatgttgatt
    38101 tagatgaaat gattaataaa caaagcatta taggcaaaac aggaacaagt ggtttagcct
    38161 taggcgatca tttgcatttt ggagttttgg ttcaaggggt tgaaacgcgt cctgaacaat
    38221 ggcaagataa aaaatggata gaaaataata tttacaatgt tttaaatgat ggtaaaaaga
    38281 taattttagg aaaaaattaa tgaaacaatt aactttagca aaaactgtca aaggcgtagg
    38341 tataggactt cataagggtg aacccataga aattacttta gagcctttag aagcaaatag
    38401 tggtatagta ttttttagaa gtgatcttaa tgcaagctat aaggcaagtc ctgaaaatgt
    38461 gatcaatact caaatggcaa ctgttttagg agatgaaaga gggtttattt ctacaataga
    38521 gcatttaatg agtgcgatta atgcttatgg aatcgataat gtacgcatag ttttaaatgc
    38581 aaatgaagct cctgttatgg atggatcaag tattagcttt tgtatgatgc ttgatgaagc
    38641 aggggtaaaa gaacttgatg cacctaaaaa aattatggta attaaaaagc ctatagaagt
    38701 aagagatggt aataaatttg tgcgtttaac tcctactaaa gaaccccgta ttaactatac
    38761 gattaaattt gacaatgctg ttataggtga acaaagttac aattttgaat tcagcaaaaa
    38821 aaattatata gaaaacatag caagggctag gacttttggt tttttaaaag atgttcaagc
    38881 tcttaggagt atgaatttag cactaggtgg aagtttagaa aatactatag tggtagatga
    38941 aaatcgtatt ttaaatcctg aaggtttgcg tttcaaagat gagtttgtaa gacataaaat
    39001 tttagatgca attggagatt taaccttact tggatatcgt gtttttgggg attatacttc
    39061 atatgctggg agtcatcgtt taaatcattt acttactaaa gaagttttaa aagataaaga
    39121 tgcttatgaa attgtaagcc ttgaaaaaac aacccaaaaa gcttatgaaa aggtatttgc
    39181 ataaaaactt ctcttttact taatacttta tctaagcctt taatgatcgg aatttatcaa
    39241 gatgataaac ttataaaaac ttataaaagt gaagaaaaag caagcgaatt tttaccaaaa
    39301 attttagatg aattgcttaa agaatatgat tttacaagtt taatctatgc taatggtcca
    39361 ggttcttata tggggattaa aatttcttat gtaagtttga gtactttaag tatagtaaaa
    39421 aatattcctt tatttgcggt gagtgctttt gaattaaatg gctataaacc cataagtgca
    39481 aataaaaatt tttgttttgt atataaggaa ggtgaaattt gtttagagca aaatatccca
    39541 gtagagtttt ttttaccaaa aaatttacaa gagcttaaac taaataatga taatcttccc
    39601 ttttattttt tagatgcaat ttaggatgaa atttgaaaat tttagttcca gctacgagtg
    39661 cgaatttagg gccaggtttt gattgtttag gacttagttt aaagcttttt aatgaaactc
    39721 aaatccaaaa atcaggtgtt tttagcatta gtattggagg cgagggaagt gataatattt
    39781 ttcttaaaaa aaacaatata tttgtaaata ttttttatga aatttatgaa aaactaagcg
    39841 gaaaaaaaga taattttcgt tttatttttc aaaataacat tcctctttca agaggattag
    39901 gaagctcttc agctgtgatt gttggagcta ttgccagtgc ttattatatg agtggattta
    39961 aggtagaaaa agaatgtatt ttagatgaag ctttaattta tgaaaaccat ccagataata
    40021 tcgctccagc tactcttggt ggttttgtgt gttctttggt tgaaaaaaat aaagtttata
    40081 gtatcaaaaa agagattgat aaagatttag ctgctgtggt tgtgatccca aatttggcaa
    40141 tgagcacgga acaatcacgc caagctttgg ccaaaaattt aagttttaat gatgcggttt
    40201 tcaacctttc tcatgcttca tttttaaccg cttgtttttt ggagaaaaaa tatgaatttt
    40261 taaaatttgc aagtcaagat aagctccatg aaatcaatcg tatgaaaaac ttacccgagc
    40321 tttttgaagt gcaaaaattt gccttagaaa ataaagcttt aatgagcaca ctttcaggtt
    40381 cgggatcgag ctttttttct ttagctttta aagatgacgc tttagctttg gcaaagaaaa
    40441 tacaaacaaa atttaaagat tttcgtgtgc aatatttaga atttgatgat aatggctttg
    40501 aaatttgcta aaaaatataa aaaaaagata taattttgaa aaaacatata ccaattagaa
    40561 tgtgcatagc gtgtaaaaac cgctttgagc aaaatatgtt atttagattt aaagttgttt
    40621 taggagatat tgtgcctaaa gcagaacatg gaagaagcgg atatttatgt caaaattgta
    40681 ttgagagaga agataaagtc ttacaaaaag cattttctaa aatatgtaaa aatttaaata
    40741 ctaaaattac tcagcaagga cttaaggaga tatttttaaa tggcaaagat tagaattcat
    40801 gaaatcgcaa aagaattagg ttatgatagt aaggaaatta ttgaaaaggc aaatgaatta
    40861 ggacttggaa ttaaaacagc atcaaatgct gtagaacctg agattgcggc agctatttat
    40921 gagtatatac aaacaagaga aattccagaa gcttttaaga aaaatatcaa aactcctaca
    40981 gcaaaaaagc ctaaaaaaga aaatataaaa gaacaagaaa agctaaatga atctgaaaaa
    41041 aaagaaccta aaaaagaaga aaagcttaaa caagaagtta aaaaagaaga attaaaaatt
    41101 gaaaaagaaa atgcaaaaga ggaagaaaaa caagaaatta ttgatgctca taagccacaa
    41161 agccttgcta gtgcaacttt agccaaaaga cgcggacttg ttattgttaa aaagaaaaaa
    41221 gacgaagaag aaattcaagt taaaaaagaa gaagtaaaaa attcaaatga tatatctatc
    41281 aataatgaag agcgcttaag tttaaaaact atgttttcaa atgctgatga gagtttaaag
    41341 aaaaagaaaa aagaaaaaaa atcttttgtt gcgagtaaaa aagaaagtac cgaaaaaatg
    41401 aattttttag atgaacatga ttttggtgat atttctttag atgatgaaga tgaggtagta
    41461 ttacctgatt ttagtgtaaa agaacaagaa aaaccacaaa atatcaataa aaaacaacct
    41521 aattttataa gacaagctgt tggaaattct gcgggttttg ggtttgaagg tggaattcaa
    41581 agaagaagtc gtaaaaaacc atctaaaaag attgaaaaaa aggaagtaga agaagtaggt
    41641 agcgttgcta tttctaaaga aattcgtgtg tatgaattcg ctgataagat aggaaaaagc
    41701 actagtgaag tgatttcaaa acttttcatg cttggaatga tgacaacaaa aaatgatttc
    41761 ttagatgaag atgcgattga aattttggct gctgaatttg gtatagagat caatatcatt
    41821 aacgaggctg atgagtttga ttatgtaaaa gactatgaag aagagactga tgaaaaagat
    41881 ttagtgacta gagcacctgt gattaccatc atggggcatg ttgatcatgg taaaacttct
    41941 ttgttagatt atattagaaa atcacgcgtt gcaagtggtg aagcaggggg tattactcag
    42001 cacgtgggtg cttatatggt agaaaaaaat gggcgtaaaa ttacttttat cgatactcca
    42061 ggtcacgaag cttttactgc tatgcgtgca aggggtgcaa gtatcactga tattgtaatc
    42121 atcgttgtag ccgcagatga tggggtaaaa ccacaaacca aagaagcgat aaatcatgct
    42181 aaagcagcag gtgtgcctat tattattgct attaataaaa tggataaaga agcagcaaat
    42241 cccgatatgg taaaaactca actcgcagaa atggaaatca tgccagtaga atggggcgga
    42301 tcttatgaat ttgtaggagt ttcggctaaa acaggaatgg ggattgaaga tttgcttgaa
    42361 atcgtgcttt tacaagctga tattttagaa cttaaagcca atccaaaaag ttttgctaaa
    42421 gcaagcatta tagaaagttc tgtgcaaaaa gggcgtggtg cggtggctac tatcatcgtg
    42481 caaaatggaa cacttactgt aggaagtacc gtggttgcag gcgaggctta tggaaaagtg
    42541 cgtgcgatga gcgatgatca aggtaaagcc ttaaaagaaa ttaaaccagg cgaatgtggg
    42601 gttatcgtag ggcttagtga agtagcagat gcaggtgaaa ttttaatcgc agtaaaaacc
    42661 gataaagaag caagagaata tgctaataaa cgccacgaat acaaccgcca aaaagaactt
    42721 agcaaatcca ctaaagttag cattgatgag cttggagcta agatcaaaga aggcaatcta
    42781 aaagccttgc ctgttatttt aaaagctgat gtgcaaggat ctttagaagc cttaaaagca
    42841 agtttagaaa aacttagaaa tgatgagatt aaagtgaata tcattcatag cggggtagga
    42901 gggatcacac aaagtgatat agagcttgca agtgcgagtg aaaactctat agtactaggt
    42961 tttaacatac gcccaacagg ggaagttaaa gagcgtgcta aggataaagg cgtagaaatt
    43021 aaaacctata atgtgattta taatctttta gatgatgtaa aagccttgct tggtggtatg
    43081 atgagtccga ttatttctga agagcaatta ggacaagcag agattagaca agtgatcaat
    43141 gtgccaaaaa tcggacaaat cgcaggttgt atagtaactg aaggggtgat taaccgtgga
    43201 gctaaaattc gccttatccg tgatggagtt gtggtttatg aaggaaatgt aagctcgctt
    43261 aaacgtttta aagatgatgc taaagaagtg gcaaaaggct atgagtgtgg cgtaggtata
    43321 gaagggtgtg atgatatgag agtgggtgat tatatagaaa gctataaaga agtagaggaa
    43381 caagcaagtc tatgaaccca agtgagatta aaaaactacg cactgaaagt atcttaaaag
    43441 agctaatccc tgaagcttta gcaaatttag atgatgaaaa tttgaaaaat ttgtgtgtag
    43501 tggatgtaga gtgtaaaaaa ggcagatatg atgcttttgt gtatcttgat aagatgtttt
    43561 ttaatgttca tgagcaagaa aaaattttat cttctttaaa aaaggcaagt agagctttgc
    43621 aaaattactg catgagtgag cagggttggt ataggtgtcc gaattttcat tttaaatttg
    43681 atgataggct tgagtatcaa aaccatatgg atgcactttt tgaaaaaata aaaaaggata
    43741 aaaatgaatc ttgaagccct ttgcaaagaa gcagagctta gcttttatga tgatgagcta
    43801 gtaagtgaaa atggcagaaa aatttataga atttatgtgc aaaaagaagg cggggtaaat
    43861 cttgatgatt gtgcaaggct tagtgaaatt ttatcgccta tttttgatgt agagccacct
    43921 gtaaatgggg agtatttttt agaagtatct tcaccaggac ttgaaagaaa acttagcaag
    43981 atagaacact ttgctaaaag tataggtgaa cttgtgaaga tcacaaccaa tgaaaaagaa
    44041 aaattcgaag caaaaatcat tgctgtagat gatgaaaata tcactttaga aaatttagaa
    44101 aataaagaaa aaactactat aaattttaat gatataaaaa aagctagaac cttcatacaa
    44161 tggtaaaaat ttagattttt ttatataatt aaaataaaaa caaaaaatca aaaggcatgc
    44221 aatgttagaa aataaatgtg attggaaaat aagtaaggca gatcaaaatg gtaatgtgta
    44281 ttattatttt ccaaaagatg aagatgaatt taaagaagca gttgtaaaaa atggcggtat
    44341 gagtgtgtat gtttatcaag aaggtaaatt tatagatgaa tttcacacaa aaagtcaagg
    44401 tgataaatgg acttcttcta ttcttaatta tttaaaaact atgagt
//
LOCUS       DARGEX010000004        40911 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.004, whole genome shotgun sequence.
ACCESSION   DARGEX010000004 DARGEX010000000
VERSION     DARGEX010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 40911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40911
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.004"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1098
                     /locus_tag="SF010_000171"
     CDS             <1..1098
                     /locus_tag="SF010_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG8229140.1"
                     /translation="QILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIVSAN
                     PEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSG
                     KGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLKPIL
                     THGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGDAQI
                     TSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNGKEY
                     DIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMAAEK
                     IWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            1124..2284
                     /locus_tag="SF010_000172"
     CDS             1124..2284
                     /locus_tag="SF010_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG8229141.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(2309..2932)
                     /locus_tag="SF010_000173"
     CDS             complement(2309..2932)
                     /locus_tag="SF010_000173"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG8229142.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKKELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(2934..3701)
                     /gene="hisF"
                     /locus_tag="SF010_000174"
     CDS             complement(2934..3701)
                     /gene="hisF"
                     /locus_tag="SF010_000174"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8229143.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            complement(3702..4640)
                     /locus_tag="SF010_000175"
     CDS             complement(3702..4640)
                     /locus_tag="SF010_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG8229144.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            complement(4625..5356)
                     /gene="hisA"
                     /locus_tag="SF010_000176"
     CDS             complement(4625..5356)
                     /gene="hisA"
                     /locus_tag="SF010_000176"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG8229145.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            complement(5353..5940)
                     /gene="hisH"
                     /locus_tag="SF010_000177"
     CDS             complement(5353..5940)
                     /gene="hisH"
                     /locus_tag="SF010_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8229146.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKTKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            complement(5937..6995)
                     /gene="hisB"
                     /locus_tag="SF010_000178"
     CDS             complement(5937..6995)
                     /gene="hisB"
                     /locus_tag="SF010_000178"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG8229147.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVHGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            complement(6992..8278)
                     /gene="hisD"
                     /locus_tag="SF010_000179"
     CDS             complement(6992..8278)
                     /gene="hisD"
                     /locus_tag="SF010_000179"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG8229148.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKHLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            complement(8286..9185)
                     /gene="hisG"
                     /locus_tag="SF010_000180"
     CDS             complement(8286..9185)
                     /gene="hisG"
                     /locus_tag="SF010_000180"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG8229149.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            complement(9358..9711)
                     /gene="rplQ"
                     /locus_tag="SF010_000181"
     CDS             complement(9358..9711)
                     /gene="rplQ"
                     /locus_tag="SF010_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG8229150.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            complement(9715..10728)
                     /locus_tag="SF010_000182"
     CDS             complement(9715..10728)
                     /locus_tag="SF010_000182"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG8229151.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDTYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            complement(10741..11367)
                     /gene="rpsD"
                     /locus_tag="SF010_000183"
     CDS             complement(10741..11367)
                     /gene="rpsD"
                     /locus_tag="SF010_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG8229152.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            complement(11395..11787)
                     /gene="rpsK"
                     /locus_tag="SF010_000184"
     CDS             complement(11395..11787)
                     /gene="rpsK"
                     /locus_tag="SF010_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG8229153.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            complement(11797..12162)
                     /gene="rpsM"
                     /locus_tag="SF010_000185"
     CDS             complement(11797..12162)
                     /gene="rpsM"
                     /locus_tag="SF010_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG8229154.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            complement(12165..12278)
                     /gene="rpmJ"
                     /locus_tag="SF010_000186"
     CDS             complement(12165..12278)
                     /gene="rpmJ"
                     /locus_tag="SF010_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG8229155.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            complement(12450..12668)
                     /gene="infA"
                     /locus_tag="SF010_000187"
     CDS             complement(12450..12668)
                     /gene="infA"
                     /locus_tag="SF010_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG8229156.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            complement(12756..13553)
                     /locus_tag="SF010_000188"
     CDS             complement(12756..13553)
                     /locus_tag="SF010_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8229157.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKSSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIEPKFLD"
     gene            13640..14935
                     /locus_tag="SF010_000189"
     CDS             13640..14935
                     /locus_tag="SF010_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229158.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNDNPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            14985..16616
                     /locus_tag="SF010_000190"
     CDS             14985..16616
                     /locus_tag="SF010_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG8229159.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLVLVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(16636..17058)
                     /gene="cgb"
                     /locus_tag="SF010_000191"
     CDS             complement(16636..17058)
                     /gene="cgb"
                     /locus_tag="SF010_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG8229160.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(17125..17559)
                     /locus_tag="SF010_000192"
     CDS             complement(17125..17559)
                     /locus_tag="SF010_000192"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8229161.1"
                     /translation="MQYTALKLLSSSNEDDKLIASDFTSLFLSDVDYVKAPPFASFYL
                     DENKEIYSDNSDKIKQIFVQNNFFSFFNKEPADSLINELLFISFLIKKQDDIILQKFL
                     KEEFFTWFNMWSFDVINKAKTHFYKALTMLMQDFFNQLNTKF"
     gene            complement(17680..18006)
                     /locus_tag="SF010_000193"
     CDS             complement(17680..18006)
                     /locus_tag="SF010_000193"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229162.1"
                     /translation="MSFFTGLIGIGLLNTAIVLQTLHVGQTWIMGLVNPFELLGGTYD
                     WFISLSFAFLGLGTVTWYLHNYLHEKFKSKFFAYFALLCAFLGVFTTRMLFYGLISTQ
                     IMLGHS"
     gene            complement(18058..18315)
                     /locus_tag="SF010_000194"
     CDS             complement(18058..18315)
                     /locus_tag="SF010_000194"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229163.1"
                     /translation="MGVFYANNEWHIGWMNNEILFVSLVCALGFLLYLKTSNWVFYLT
                     LICGILGLFFMSGAYMAPCKKVCLLGILRSLCFIFLLVLYF"
     gene            complement(18384..18548)
                     /locus_tag="SF010_000195"
     CDS             complement(18384..18548)
                     /locus_tag="SF010_000195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229164.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALELQ"
     gene            complement(18535..19191)
                     /gene="dmsB"
                     /locus_tag="SF010_000196"
     CDS             complement(18535..19191)
                     /gene="dmsB"
                     /locus_tag="SF010_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HEG8229165.1"
                     /translation="MKLEENSQFGVMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQNVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRTLKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            complement(19202..21523)
                     /locus_tag="SF010_000197"
                     /pseudo
     CDS             complement(19202..21523)
                     /locus_tag="SF010_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009883064.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            21859..23394
                     /locus_tag="SF010_000198"
     CDS             21859..23394
                     /locus_tag="SF010_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8229166.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSIYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAIDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            23394..24338
                     /locus_tag="SF010_000199"
     CDS             23394..24338
                     /locus_tag="SF010_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229167.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLATFFTFLSDIVARILNPRLRRLDFV"
     gene            24325..25119
                     /locus_tag="SF010_000200"
     CDS             24325..25119
                     /locus_tag="SF010_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229168.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKVVFIGAWWIILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            25116..25826
                     /locus_tag="SF010_000201"
     CDS             25116..25826
                     /locus_tag="SF010_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229169.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKKNASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            25819..26484
                     /locus_tag="SF010_000202"
     CDS             25819..26484
                     /locus_tag="SF010_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8229170.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFITHQSDLFYKFNHKK
                     LKL"
     gene            26597..26986
                     /locus_tag="SF010_000203"
     CDS             26597..26986
                     /locus_tag="SF010_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG8229171.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            26968..27471
                     /locus_tag="SF010_000204"
     CDS             26968..27471
                     /locus_tag="SF010_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG8229172.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            27468..28262
                     /locus_tag="SF010_000205"
     CDS             27468..28262
                     /locus_tag="SF010_000205"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG8229173.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            28264..29490
                     /gene="nuoD"
                     /locus_tag="SF010_000206"
     CDS             28264..29490
                     /gene="nuoD"
                     /locus_tag="SF010_000206"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG8229174.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            29487..29714
                     /locus_tag="SF010_000207"
     CDS             29487..29714
                     /locus_tag="SF010_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG8229175.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            29711..30403
                     /locus_tag="SF010_000208"
     CDS             29711..30403
                     /locus_tag="SF010_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229176.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            30400..32862
                     /locus_tag="SF010_000209"
     CDS             30400..32862
                     /locus_tag="SF010_000209"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG8229177.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            32855..33853
                     /gene="nuoH"
                     /locus_tag="SF010_000210"
     CDS             32855..33853
                     /gene="nuoH"
                     /locus_tag="SF010_000210"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG8229178.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            33863..34504
                     /gene="nuoI"
                     /locus_tag="SF010_000211"
     CDS             33863..34504
                     /gene="nuoI"
                     /locus_tag="SF010_000211"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG8229179.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMQERALENQNTQEQGENK"
     gene            34501..35019
                     /locus_tag="SF010_000212"
     CDS             34501..35019
                     /locus_tag="SF010_000212"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG8229180.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELTKEKQ"
     gene            35016..35312
                     /gene="nuoK"
                     /locus_tag="SF010_000213"
     CDS             35016..35312
                     /gene="nuoK"
                     /locus_tag="SF010_000213"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG8229181.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            35314..37104
                     /gene="nuoL"
                     /locus_tag="SF010_000214"
     CDS             35314..37104
                     /gene="nuoL"
                     /locus_tag="SF010_000214"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG8229182.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPNEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            37106..38593
                     /locus_tag="SF010_000215"
     CDS             37106..38593
                     /locus_tag="SF010_000215"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG8229183.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            38583..39971
                     /locus_tag="SF010_000216"
     CDS             38583..39971
                     /locus_tag="SF010_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG8229184.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIATRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFAILLML"
     gene            39993..>40911
                     /locus_tag="SF010_000217"
     CDS             39993..>40911
                     /locus_tag="SF010_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8229185.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSIRDQQILEKMIDDAKNWMRTFTSDKNFSEVLHIMLKTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNE"
BASE COUNT        12739 a         5865 c         6876 g        15431 t
ORIGIN      
        1 caaattttag agaaattaaa aactgtaaaa tatcctggtt ttgaaaagga tatagtgagt
       61 tttaactttg taaaagatat taaaattcaa gatgatggtg tattcattga tatagaaatc
      121 gtttcagcaa atcctgaagt agctaatgaa attcgtaaaa atattattga agctttatcg
      181 agtttggctt taaaaaatat tgaacttaat atcattactc caaaaattcc tgaagaaaaa
      241 agtaattcaa gaagtggaaa aaatatcgct ccacaagtaa aaaatttcat catggtttca
      301 agtggaaaag gtggtgtggg taaatctaca actacagtaa atttagcaat ttccatggct
      361 aaaatgggaa aaagagtagg tattttagac gcggatattt atgggccaaa tattccaaga
      421 atgctaggtg aaaccaaaac tcagcctgaa gtagtagggc agagattaaa gcctatttta
      481 actcatggtg tttatatgat gagtatgggg gttttgatcg aagagggtca aggccttatg
      541 tggcgtggag ctatgattat gaaagcaatc gagcaacttt tagctgatgt gatttggcct
      601 gaacttgatg tattgttttt agatatgcct ccaggaacag gcgatgcaca aattacttct
      661 gcgcaaagta ttcctattac tgcaggagtt tgtgtaagca cgcctcaaac cgtatcttta
      721 gacgatagca aaagagcttt agatatgttt aataaacttc atattcctat agcgggtgtg
      781 attgaaaata tgagtggatt tttatgtcct gataatggta aagagtatga tatttttggt
      841 aaaggaacag ctgaagatat ggcaaaagcc tataaaagtg aagttttagc acaaattcct
      901 atagaaatga tagtaagaga aggtggagat gaaggcaagc ctgtgagttt ttatcaccct
      961 gaaagtgtga gttcaaggcg ttatttaatg gcggctgaaa aaatttggag ttttatagaa
     1021 aagattaaca atgaaggtgg tgcggataat tctgctatac aacctgtgat gaatggaaaa
     1081 agtgcgtgtt cgcattaaaa attaagtgga taaggaaaag aaaatgatta atactaaaga
     1141 agatttttta cttttaatca aacaaatcga gcaaaaaagt ggctataaaa aacctaaagc
     1201 ttttggtata gcaaggcttg atagaggaca gttaaataaa aataaaatct tacaagcaag
     1261 ttttgctttg attaactatg agcaaaattt tggctcagcg gcaatcatgc ttgaagcttt
     1321 tatgcaaagg ggcgtggaga ttgattttaa tgcgagtgag tttgtgcaaa ctttgaaatt
     1381 agaagatatt gattttgcac tttcttgttt taaacctttt ttagaagaag atgggcatca
     1441 aaatattgat ttattaaaga ttatcaaaga taaatttaaa gacgatgaat tttcttttgt
     1501 ttgtcttttt gaagataaag aacctttaag tgtagaaagt atttatctaa aactttattt
     1561 gctttctact aaaaaagtac ctttaagaag tatcaattta aatggagctt ttggactttt
     1621 aagcaatgta gcttggagtg atgataagcc tatcgagctt gagtatttaa gagcaaatga
     1681 aatgcgttta aaaatgagca atcaatatcc aaaaatcgat tttgttgata aattcccaag
     1741 atttttagca catattatcc ctgaggataa tacaagaatt ttagaaagtt ctaaagtaag
     1801 aatgggtgcg tctttagcag caggaacaac catcatgcca ggggcaagtt atgtgaattt
     1861 taatgcaggt acaacaggag cttgtatggt tgaagggcgt attagttcaa gtgctatagt
     1921 aggagaaggt tctgatgtag gtggcggagc ttcgatttta ggtgttttaa gtggaacaag
     1981 tggcaatgct ataagcgtag gcaaggcttg tcttttaggg gctaattcag tgacaggaat
     2041 tcctttaggg gataattgta tagttgatgc aggtattgca gtgctagaag gaacgaaatt
     2101 tttactcaaa gatgccgaag aacttgctaa acttaatcct tattttaatt ttgataaaga
     2161 aatttacaaa ggcttagagc ttaaaggttt aaatgggcta catttccgtc aagattctat
     2221 aagtggtgct atgatagtag ctttaaataa aaaagcagtc aaacttaatg aagccttgca
     2281 ttgatataaa tttattttac ataaagcttt aagctttatg tctttctttt aattttgaaa
     2341 tcacatctga gaaactaaga tttgcatctg caagtaaaac acttaaatga tacattaaat
     2401 ccgctgcttc acaaataagc tcttttttat cttttactgt cgctgctaaa gctgtttcta
     2461 cgccttcttc accaactttt tgtgcgatgc gttttgtacc acttttgaaa agttttgctg
     2521 tataagaagt attttcatcg gcatttttgc gtgcattaat aagtttttca agtctggcta
     2581 gaaaaacaaa atctgcattt ttagaaattt tttcaaaaca agaaatatcg cccgtatgac
     2641 aagtaggccc tacaggattt gctaaaatta aaagcgtgtc attatcacaa tctaagctta
     2701 aatctatgat atttaagaaa tttccacttt cttcaccctt catccaaaga cgctgttttg
     2761 tgcgtgaaaa aaagactact ttgccacttt ctaagctttt ttctaaggct tcattattca
     2821 taaagcctag cattaaaact tcgcaagttt ttgcatcttg gatgatgaca ggtaaaagat
     2881 tatccacttt ttgccaagcg attttttcat taagttcttt gaaattttgc atattatatc
     2941 cttatactta agccttgatt tttaagataa atttttaatt ctttaatgtc tataagtttt
     3001 tgatgaaaaa cagaagcagc taaagcccca tctataccta gtttaaaagc ttctaaaaaa
     3061 tgttccattt ttcccgctcc cccacttgcg atcaaaggta ctttacaaat tttatataca
     3121 gcttctaatt gttctaaatc atagccattt ttaacaccat cttgattcat catatttaaa
     3181 acaatttcgc ctgcacctag atcttgcact tttttaaccc attctaaagt gctttttcca
     3241 ctatgtttac ttgttttttc atcccctgtg tattgaaata cttttaaatt tccattttca
     3301 tctttaaaac tatcaatccc tactactacg cattgcacgc caaagctttt agcaaggcgt
     3361 gtgattaggc ttggatcatt taaagcagga gaattgatag aaattttatc tgccccatta
     3421 gccaaaagtt cagctgcatc ttcttcgctt ttaatacccc ctgcaacaca aaaagaaata
     3481 ttgatatttt ttgctacttc acttacccat tctcttgata tgcgttcttt tctagcactt
     3541 gcagcaatat cataaaaaac aagctcatca ataccatttt gagaataata cctagcaagc
     3601 tctatgatat ctcccatatc tttatggttt ttaaattgtg ttccttttac tactctgcca
     3661 tctttgacat ctaaacatgc aattatgcgt tttgtaagca tttatttctc caaaatacat
     3721 ttttctttaa gatatttttc catttcttca tcgcttttaa tttcatcaaa attagcttga
     3781 atttttgctt ctttgcccac tttaatttgt ttgtttatat catcaataaa ttctttaaaa
     3841 tttggatttt tattgatcag catatttagt gtttgaatat caagttcttt ttcttttgca
     3901 ctaattaaaa tttgagaatt tgaaatatct ttttcaagtt ttatcactcc tatgccaaaa
     3961 ctttgattta agcgtcttaa ctcacttaaa acttcgctat caatttcttg taaaacaacc
     4021 aaatagcctt catttgccca gctagaattg cttacagctt gaaaatagca ttcttttaaa
     4081 tttgaaaaat ttaaagcaat tttaagttca aaagaaaaaa gcttataact attttgtttg
     4141 atattttcta aaagtgttat ggtctctttt tcataatcat cgtaaggaaa ataaacccct
     4201 acaatatcag gataattcca cttatcttcc ccgcccttac cctttttgct ttgttcgtga
     4261 taaattgttt tgcaatttaa attaaaatct aaattttcat ataaaaattt tacaagcaag
     4321 gggtgtaaat ctctttcatg aaatttattt ttttcttgtt tttcattggt aatttcattt
     4381 ttattatcaa gctttaaaag ttcattttct ctttctttta gccaaaaagt tgtaggtttt
     4441 attgaggttt taagaaagtt aattttatct gtaagcaacc tattccaaat tgtttgagtg
     4501 ggtgtttgtc ctatactaga aagcttttta tctaagcctt tttcaagagc tttttgccaa
     4561 atttcactca catttaaagg ctttttagtt tgttttaaaa cttctataat taattcttta
     4621 taggtcaatt ttccagacat cttatccctt cttctacact aaaaactccg tctaataaag
     4681 cttttcctac gataacccca ctacaaattc cttttaagtt ttcaaggtct tttaagcttg
     4741 ctactccacc acttgcctga atgcaaatat gaggaaaaat ttcatggata agtttataaa
     4801 gtcttgcatt tactccttgc atggtgccat cttttgaaat atctgtgcaa agtatgtgtt
     4861 ttaagccttt attgctataa aaatctaaaa cttccataag ctttttatcg cttgcttctt
     4921 gccaagcatt tacagccaca acataatctt cttttaaaat cgtatctaag gctaaaacta
     4981 tagcttcact accaaattct tttaaaattt caagacataa agtcgcatct ttaattgcca
     5041 tagatcctat aactactctt tttactccac aatcaagcaa agctctaact tctgctttag
     5101 agcgtatacc tccacctact tgcaaattga cactgacttc tttggctaat ttttctatca
     5161 aagcaaattg tcttttgcta ggatcttttg cacctgtaag atctacaaga tgaagttctt
     5221 tcgctcctgc tttttcgtat tctttaaatt tctttaaggg attgtattta tatacttttt
     5281 tttgttcgta atcccctttt acaagacgca ccacttcgcc atctataaga tcgagtgcgg
     5341 gtatgatttg agtcatccta tatccttaat aaaatttgaa attaaaattt ccccagcctc
     5401 gctacttctt tcagggtgaa attgcactcc gtaaaaatta tctttcatta cgcttgcgct
     5461 aaatttttgc gaatactcac aatctgctat agtgtatttc ccaagtccta cacaataact
     5521 atgcacaaaa taaaaataag ccccttctaa gcctttaaac aaagcatgag agctataaac
     5581 ttcattccat cccatatgtg gaaaagtaaa gccttcttta gttttaaatt tttgagttgt
     5641 aaaatctatg agttttaagg tttcttgatt taattcttca gaaaaatttc ctaaaatttg
     5701 catacctaaa caaataccaa gcaaaggttt tttggtattt tgaataaaat caataagatt
     5761 aaattgttct aaatttttca ttgcttcttt tgcggtaccc actccaggta aaaaaagctt
     5821 atccgcactt tcaagttctt ttaaatccct actgatagtt gcattaaaac ctaatctatc
     5881 tagacaaaat ttcaaagatg ctaaattcgc acaggctgta tcgatgatga tgattttcat
     5941 atcactcctt tagagctggc taaattttca ctttctattt ttactgccat tttcaaagct
     6001 tttgcaaagg ctttaaaaag cccttcggct ttatgatgat cgtttttgcc tttaactttt
     6061 aaatgcaaac tcacgcccat agcatagctt aaagaataaa aaaagtgctc gatcatttct
     6121 gtgcttaaag cccctaaatg agatttttta aatttggctt tatagactaa atggggacga
     6181 ttgcaaaaat ccatcgcaca acttgccaaa cactcatcca taggtaaagc aaaaccatat
     6241 cttgcaatgc cgattttatc ccctaaagct tttttgatac aagctccaag tgctaaggct
     6301 acatcttcaa cgctatgatg ctcatcgatt tccaaatctc ctttacaaga aatttcaagc
     6361 cctatacctc catgtacagc gatttgctct aacatgtgat caaaaaaatc aatacctgtt
     6421 ttaatgctaa ccttaccccc atttaagcat acctttactt ttatatctgt ttctttagta
     6481 gttctttgat aactcgcgct tctaaaagaa cttaaaattt cattttctat ttctttccaa
     6541 gaaagttcgc cgtattttaa accatgcacg cctaaatttg aagccaagat catatcactc
     6601 tcacgatctc ctataacaaa actttgctcc ttatcataaa gttcgtgttt gatatactct
     6661 tctaacatag cggttttagg ttttctgcaa gcacaatttt cattttcaaa atgcggacaa
     6721 ataaaaatat cttgaaattc tataccgcaa ctttttaaaa tatcaagcat tttttcatga
     6781 gcgatttcaa aattttcctt tggaaaactt ggtgttccaa gaccgtcttg attgcttacc
     6841 ataacaaatt taaatccaaa tttttttagt tttaaaagag tgggaatagc atctttttca
     6901 aaacgcaatt tttcaagagt atcgatttga aaatcgcttt ttggctcctc tattaaagtg
     6961 ccatctctat ctataaaaag gattttttga ctcattttaa gctttccaaa cgaaaagtta
     7021 ctgcattttt gtgcgcgtct aaatgctcat tttgtgctaa aatttcaaca cttttaccta
     7081 aagctaaaaa accttcttta cttaactctt gaacggtcat tcttttgcta aaatctgcca
     7141 aacctaaact agaatgcgtt ttagtaagtc cataagtagg taaaacatga tttgtcccac
     7201 ttgcataatc acccatagac tctggggaat aagctcctaa aaatactgat cctgcgtgtt
     7261 ttacaccttt taaaagttct cgtggatttt gagtttgtat gatcaaatgt tcaggggcgt
     7321 aaagatttga aatttctaag gcttgattta aatctttagc tatgataatg cgtgaattag
     7381 caatgctttt gcttgcaagt tctttgcgag gcaaaagttc taattgactt tggacttcat
     7441 cacttgcttt tttagcaaaa tcttgactta aacacactaa aatcacttga gaatctgcac
     7501 catgttcagc ttgtgaaagc aaatcactag ctacaaattt ttcattagct aaatcatcag
     7561 ctatgactaa aacttcacta ggtcctgctt gcatatcaat agctgctccg tttatatcac
     7621 tacttacttg gcgttttgct tcggttacaa aggcatttcc tgggccaaaa attttatcca
     7681 cctttaaaac actttgggta ccgtaagcca aagctgctat agctcctgca ccacccattt
     7741 gataaatttc atccacgcca caaagcttag cacaaaaaag cacagcatca ttgatttttg
     7801 caggacttgc taaaacgatt ttttcacaac ctgcaatttt tgcaggaata gctagcatta
     7861 aaaccgttga aaacaaaggt gccaaacccc ctggtatgta aagtcctact ttttctatag
     7921 ggcgtgttaa aacttcacat ttaacgcctt ttgtagtttc aagagcgatt tcatgtggga
     7981 tttgggcttc gtgaaatttt ttgatatttt cataagccac taaaatagct tcttgtaaat
     8041 ctttatctaa atgcttgctt gcttgagtga tttcttcttg agtgatttta atctttgaaa
     8101 tttcagcctt atcaaatttc aaagcttgtt ctatcaaagc ttcatcgcct ttttcttgca
     8161 cttctttaat gatagaactt actatttttg aaatttcatc tttcgcactt atagcagggc
     8221 gttttaacgc ttcttctttt tgtttttcat ccaaattatc atatactaaa atttgcattt
     8281 tttactcact ttaacatttt ttctataggc agaactaaaa tcgaactcgc accttcttct
     8341 tttaaagcct ccatggtttc ccaaaaaaga ttttctttac ttaccatatg taaagctaca
     8401 tttttttcat cgtgtgctaa aggtaagata gtcggtcttt caactcctgg aagtagggct
     8461 tgaattttat caagcttttc ttttggagca tgaagcataa tgtatttaga ttctcttgct
     8521 tgcattactc ctgctacacg caacataatt ttatccacta aggcttgttt ttctttactt
     8581 aaagcatttt ctttttgaat caaacaagca cgagattcat aaatgacttt aacttcttta
     8641 agattgtttg cttgtaaagt tgccccgctt gaaacaagat cgcaaatcgc atcggctaaa
     8701 tttgccctag gggctacttc aacagaacct gtaagcgtac aatttttata attaatccca
     8761 ttttctttca taaaacgctt taaaagttgt ggataagaag tagctatcct taagccttca
     8821 aaatctttca aattttgaaa tttattttct tgaggtaagg caagagaaag acggcaatat
     8881 ccaaaatcta gcttttttaa aagcttatag cttggatttt ctcctaaaga ctggcgttca
     8941 agttcatttt cttctaaaac attttcccct ataatgccta aatctacaac cccatcaaaa
     9001 ataagcccag ggatatcatc atctctaacg cgtaaaatat ctatgggtaa atttgtagaa
     9061 aaagcgatca agctttgttc atggatatgc attttaacac cacattctga aagaagctct
     9121 atggattctt ttgaaagtct acctgatttt tgtatcgcaa tgcgtaaacg agtgttttct
     9181 tgcataacat atccttgaaa ttaaaaatta aaaacttata ttagcataag tagttgaatt
     9241 tttagcaagg gttttagaaa ataaataaat ttaattttat ttaaaataat tatttaaaac
     9301 tttttatttt taaggtattt aattgaagta ttaatcctag caaaagctag gatttgatta
     9361 agctacaaat tcgatgaaag ccatttcagc agcatcacca cggcgaattc ttgttttgat
     9421 gattcttgta tatccaccat tgcgatcttt gaattttgga gcaatttcag tcactaattt
     9481 attagtagcg tttttatctt gtaatgaagc aaaaactgct ctatgagcgt taaaatctcc
     9541 aagtcttgct ctagtaatca atctttctac ataacctctt aattctttag cttttggtag
     9601 agtagtttcg atttttccgc tatttactaa agctatagtt aaatttttta ataaggcagc
     9661 acgatgagat gaagttctgc caagttttct atatccatgt ttatgtctca ttctttatcc
     9721 ttcgttttgt gcttttaatt ctgcgatttt atttttaagt atttctttat tatcgctaag
     9781 cttagaagtt cccacaggaa aacctatact ttccatgatg tttttaattt catcaagaga
     9841 ttttttacct aaatttttaa gccctgcaag ttcacttaca ctcatcaaag caagctcgcc
     9901 tatgtaaact actcctgctt tttcaagaca attataactt ctagcactta aatttaaatc
     9961 tgtaatgttt tgcaataatt tagtattttc tagttcattg cttgttgctt gatttttaat
    10021 tacgcttcta acattggtga ttttatcaaa tactgataat tgtttataca tagcttctag
    10081 agcattttga aaagcttcat ttggagtgat ttgtccatca gttgttacag ttaaaaccac
    10141 tttttcataa tcaggattat cttcaaacaa aactttttca atatcatagg ttgcttctct
    10201 tacaggtgta aagaaagcat ctaaagctat aaatttagga tcatttataa gctctttaat
    10261 ttcttcgctt ggtacatagc caataccttt ttcaacgatc aatgtgaatt tgagttcagc
    10321 atcttcgttg atagttgcta gataggtgtc tttgtttact acctctactt gatcattatt
    10381 tagatctttg ccgtaaattt cttttgagcc tttaaagcta aattctacta tttctttatt
    10441 tgattcgcct ttaattttaa agcgtagttt ttttagatta atgataaaaa gtgctacatc
    10501 ttcaagcata ccacgcatgc tatcaaattc atgagctacg ccatcaatat gaatcgcagt
    10561 tggagcatat cctatggtgc tagtgtaaag taaacggcgt aaaggatggg ctagggtgat
    10621 tccatagccg atctcaaaag gccaagcact gattttagcc acagtatcac taatgttttc
    10681 tattgtaaat tctgttggcg tataagcaga tgttgtaata tttctcatat ttagccccta
    10741 ttatttagag taaagctcaa cgataaatct ttcctcaacc ggaatgacaa cttcttctct
    10801 ttcaggtttt cttgtgaaaa ttccaaatct cttatctttt tcaacatcaa cccaagcaac
    10861 gattccagtt tgtgctgtaa gttcgatagc tcttgtaatt tgaggattgt ttttgctttt
    10921 ttcgataatt tcgattttag cacctgcttc tactctaaag ctaggaatat ccactctttt
    10981 accatttact aaaacatgtc catgtgttac aagttgtctt gcaaaacgac gtgttgtagc
    11041 aaaacccatt ctatatacta cattgtctaa tctttgttct aaaagttgga taagtaatac
    11101 ccctgtattt ccttctcttc ttgctgcttc agcaaataaa cgacggaatt gcttttcgct
    11161 tactccatac ataaatttag ctttttgttt ttctcttaat tgaagtccat actcactaat
    11221 tttacctttt cttgctccgt gttgtcctgg tgcataaggg cgtttatcta gtgcactttt
    11281 gccagctagt cttctttctc cttttaatgc taagctaaca ccaaagcgtc tttctaattt
    11341 ttctactggt cctctatatc ttgccataat attctcctaa atttttctta tatcttagac
    11401 acgacgacgc ttaggcggtc tgcaaccatt gtgagctaat ggagtgatat cttttaagaa
    11461 agttactttg attccttcca tagcacctac actcttaaca gcagtttctc taccgcttcc
    11521 tggtccttgt actttaatgc ctacttcttt aattccgtgt tcttttgctt tatttaaagc
    11581 gtcttctact gcttgttgtg ctgcataagg agttgatttt ttagaacctt taaatcctaa
    11641 accacctgca ctactccaag cgatagcatt tcccatttca tcagttactg taaccatagt
    11701 attgttaaaa gtcgcactga tataaacaat accttttgct atattttttt taactacttt
    11761 tttctttacg atttttcttt ttgccatgat ttatccttat gattttgcac caacagtttt
    11821 tctcttacct tttctagttc ttgcgtttgt ttttgttttt tgtccgcgaa ctggtaaccc
    11881 ttttctgtgt cttaaacctc taaagcttcc taaatccata agcgctttaa tatccatagc
    11941 aacttgtttt ctcaagtccc cttcaaccat atagttttct tgaatttctt tacggatagc
    12001 tgctgcttca tcttcactta actcatgaac tcttttatca taagaaattc ctactttatc
    12061 tagaattttt cttgaagtga aaagtcctat accataaata taggttagtc catactcaat
    12121 tctttttttc tttggtaaat ccacacctgc aatacgagcc atgtttatcc ttgtctttgt
    12181 ttatgttttg gattttcgca aataatgcga accacgcctt tacggcgaac tactttgcac
    12241 ttgtcgcaca tctttttaac cgatggtctc actttcatga gcgtctcctt gaatgaattc
    12301 cacttgattt acgactacat caggttttat gaataaccaa ctattttcaa aataagtggt
    12361 ggattttaaa aatacttctt catatagttc gatgtaattt gtcgcaaaaa ctctaatttt
    12421 atctaaaatt agcttttaaa taacttagat tatttatatc taaaagttat acgcccttta
    12481 tcaaggctat aaggtgtaag ttctactttt actttatcac ctggcattat tcttatataa
    12541 tgcatacgca tttttcctgc aatatgacat aaaattacat gtttgttgtc aagttcaacc
    12601 ttgaaatttg cattaggcaa tgcttcaagt acggtgccat caatttcaat tacatcatct
    12661 tttgccaaaa ttttctcctt tcatgaaata aaaaggctat aattttagca aaaattatta
    12721 aaatttttac ttaattttta gtaattttta agtaattaat ctaaaaattt aggttcgata
    12781 aaaggcacat gagtccctat aactttgagt tttctttctt taaattcttt aagtagtttt
    12841 tcccttgttt gtatagcctc attttgatct atatcaaatt ttatagcgat tttaggtttt
    12901 ggaatttgta tatcataaag atgaagtaaa tctccccaaa agactatttt atcatcaatt
    12961 attatagcat tttgtcctgg ggtatgtcca taagcaggta tggctttaat gcctgaattt
    13021 tgaaagatta aatctttaga gtggttaata aattctatat ttttaagttt aagcaaggtg
    13081 tttttaattt cttgtctatc gcttttgatc caaaaatcat attctttttt atcgattaaa
    13141 atttgagctt ttggaaaaag attttcttcg ctcattaaag cacctatatg atcaggatgc
    13201 gcgtgtgtta agataatatg agtgatatct ttaaaatcgg ttttgtggat atgtaatttt
    13261 tcttttaatg tatcaatagt atctaaaaac cctgtgtcta ttaaagcatt aaaatttgga
    13321 ttttttatca gagcaatatt atgctcattt cttttgattt ttgtgcgagt tttttctata
    13381 aaattcttat cttcatcgct ttgtggcact aaaaaagaaa ataataaatt taaaaattca
    13441 tcatcagatt gtttaagaga gattatatgg gtttgatttg aacttttgct tgtggttttt
    13501 tcttctaaaa aataaagatt ggtttttaaa agagtggtta taaaattaaa catatttatc
    13561 cttaaatttt tagataatat tttggaaatg attatagtat aataaaaaca atgtttttaa
    13621 aatttaaggt aattaatcaa tgagaaaatc aaaatttgaa acaaaggaaa ttaagatctt
    13681 aggactttct tcactaggag gaactttaga attttatgat tttattattt ttgtcttttt
    13741 tgctgaatat atagctaatg tattttttcc taaagatatg agtgaatttt gggctttatt
    13801 aaatacttat ggagcatttg cagctggata tttagcacgt cctttaggtg gtatagttat
    13861 ggcacatttt ggagataaat ttgggcgtaa aaatatgttt atgctaagta ttttactaat
    13921 ggttcttcct acctttgtct tagcttttat tccaggttat gaaactcttg ggtttttagc
    13981 tcctgtttta ttgatactta taagaatttt tcaaggcata gctataggtg gagaattgcc
    14041 tggagcttgg gtttttgtaa gagagtattg tcaagaaaaa caaaaagctt tctttttaag
    14101 ctgtttaaat tcagctatgg ctttaggaat tttgttagga agtatagtat ttctaatcat
    14161 taatgctttt tttagcatag aagaaattgc tgcttatgca tggcgtattg ctttttttgt
    14221 aggtggaatt tttgggatta tttctattta tttgcgtaga tttttgcaag aaactcctgt
    14281 ttttaaacaa atgaaaaaag aatcatcgct tagttctttt ccacttaaag atttatttaa
    14341 agaaaaggat attgtaaaaa atttattttc atcaatgatg atgacttggg ttttaacagg
    14401 ttgtgttatt gtgcttgttt tattaatgcc taaatttatg cccagtattt taaatttaag
    14461 tggagttgaa ggaagttatt tacagatatt aggaattttg ggaatagctt taggcggggt
    14521 ttttatgggt tatcttgtag ataaatttgg tttatttaaa atttgcattt tcttttcttt
    14581 agcttttgta tttttttctt ttttatattt ttatgcttta tatgagctta aaaatttggt
    14641 tttggtgtgt attttgtatt cgattgtttg ttttttaggt ggaattaatg tgttcgcacc
    14701 tattttaatg agtgaagttt ttagagctaa aataagattt tcaggaattt ctttttctta
    14761 taatattgct tatgcaattt caggcggtat tactccgcaa ctcgtttttt ggcttaatac
    14821 acttgcgagt aaaaatgaca atccattttt atatggtatg agtatatata tgattttttt
    14881 agcgttattg gctatttgtg ctgtttttat agtaaaagat aaaataaaat tttgataatc
    14941 actcttaaaa tgttataatt aaaattatat tttggagttt ataaatgcct tttattatgg
    15001 aattacttaa gcaaaataaa ttaaagttga tttctttttt gcttttttct tttattacaa
    15061 gcgctgttgg agttttaact cttgttttta tcaatgatta tttgcttaaa aatgcacaaa
    15121 acattcctat tttttatttt attgttttgc ttttgatttt ttttataagt tctaccatag
    15181 ttgaacttgg acttagtatt tttggacaaa attttatttt taaaatgcaa aggcgcgtag
    15241 taaagcagat cttagacacc cctttgttaa gagtcgctaa agtaggtaag gctagaattt
    15301 tagcttcttt gggaagtgat gtgagaaata tatcttttgg gcttttaaga ttgcctgatt
    15361 ttttacaatc aagtatattg attttatgca ctagtgttta tttatgttat ctttcaccac
    15421 aaatttttgc tttgtgtgtg gtatggatta tggttatttt tattactaat aattttttga
    15481 tgatgaaagt atatcagtat tttagaaagg caagggaaaa tgatgatgct ttgcaaaata
    15541 attaccaaaa tatactagat ggacataaag aacttttgat caatcgtgat agagctaagc
    15601 tttattatga agatgaattt gaaaataatg caagattgaa aaagaaaaat agtactttag
    15661 gtaatctttt taacaatctc tcaaacaact ggacaaatgt aactcttttg gttttagtgg
    15721 gtgtagagtt ttacttagct ttaaaatttg aatgggcaag tgttgcagat gctacaacta
    15781 tagctctttc tattttgttt ttacgaaccc ctttagtatc tatgatagga tcttttccta
    15841 ctttgctttt ggcaaaaatc gctttggata agatcgcaaa attggaatta gatgattata
    15901 tagaaggttt taaaaaaaca cattatatca gtgaatggaa aaaaatttct tttagaaata
    15961 ctcaatttgc ttatgaagaa aattttcatt taaatcctgt aaatatagaa cttaaaaaag
    16021 gtgaattggt atttttaata ggtaaaaatg gaagtggtaa atccactttt tgtatgcttt
    16081 tgacaggact ttttaagcca agcaaaggcg gaatttatgt tgatgatacg cttatagatg
    16141 ataaaaattt agatgagtat agatctctta tttctgctgt ttttagcgat tttcatcttt
    16201 ttactaaaac cttaaataaa gaaaattttg caagcgaaga aaaaattgct ttttggttgg
    16261 agtttttaga acttaaagat aaaacaagtg tcaaagataa tgaactgacc ttaaccaaac
    16321 tttctacagg gcaaaaaaag cgtttagcta tgcttatagc cttgcttgaa gaaagggata
    16381 ttttagtgct tgatgaatgg gcggctgatc aagatcctgt ttttagaaga tttttttata
    16441 aaaaactttt acctttgcta aaagagcaag gtaaaacaat ctttgctatc acacatgatg
    16501 atgcatattt tgatagtgct gatagaattt tcttggctca aaatggtgaa atcagcgaat
    16561 taaagggtga gaatataaag gaattagcta aaaatttagt agaaaaattt gattaaagcc
    16621 caaaatgggc ttatattatt tatcatagag ctttttttct atattgatat aaaattcagc
    16681 aatttttcca taagcaactt cccaagcttt aagagtagct tcgtcaggat ttaaaagatt
    16741 tttaatagct tttaaaaggc aagctccaac tataggataa tgctcttctt taacccctaa
    16801 attaacatga gttatggcaa ctttatcaac aaagtttctc atattttcta aattttctat
    16861 atttttagct gccattaaaa tcgccatcgc taaagctttt ggttgttctc ctgaaatttg
    16921 tttttccata ttaaacatag gttttacctc aggataatca ttaaacatta ttttataaaa
    16981 ctcattggtt aaatctactc catttttttg caaaataggc acacaatctt tgatgatttg
    17041 tatttgttct tttgtcataa tttctccttt ttaatgtaaa agagatatta tatatcttaa
    17101 aaaggagaaa aaaattgact tgtgttaaaa ttttgtattt agttgattga aaaagtcttg
    17161 cattaacatt gttaatgctt tataaaaatg tgttttagct ttattgataa catcaaaact
    17221 ccacatgtta aaccaagtaa aaaattcttc ttttaagaat ttttgcaaaa ttatatcatc
    17281 ttgttttttg attaaaaaac taataaataa taattcattt atcaagctat ctgcaggttc
    17341 tttattaaaa aaagaaaaaa agttattttg cacaaaaatt tgcttaattt tatcagaatt
    17401 atctgaataa atttctttat tttcatcaag ataaaaagaa gcaaaaggcg gtgcttttac
    17461 ataatcaaca tcgcttaaaa acaaagatgt aaaatcactt gctattaatt tatcatcttc
    17521 gtttgaagat gataaaagct ttaaagcggt gtattgcaat ttgctattat ttttaaaaac
    17581 caattttgcc agaattcttc ttttttaagt ttttctagca aaaaatgatt aggtggattt
    17641 tgcaaaaatt gataaatata tctattgcca atttttgcat taagaatgtc ccaacatgat
    17701 ttgagtactt ataagtccat aaaatagcat tctggtggta aataccccta aaaatgcaca
    17761 aagtagggca aaataagcaa aaaatttact tttaaatttt tcatgtaaat aattatgcaa
    17821 ataccaagta acagtcccaa gtcctaagaa tgcaaaagaa agcgatataa accaatcata
    17881 ggttccacct aaaagttcaa aagggtttac aagccccata atccaagttt gtcctacatg
    17941 tagggtttgc aaaactatag cagtgtttaa aagccctata cctataagtc ctgtaaaaaa
    18001 cgacattttt ctttcatgtt tgctattttc aaaaaaaaca ataataaaca atagcgccta
    18061 aaaatatagc actagcaaaa aaataaagca aagtgatctt aaaatcccaa gtaggcacac
    18121 tttcttgcat ggagccatat aagctccact cataaagaaa agtcctaaaa ttccacatat
    18181 tagcgtaaga taaaacaccc aatttgaagt ttttagataa agcaaaaagc ccaaagcaca
    18241 cacaagagat acaaataaaa tttcattatt catccagcct atgtgccact cattgtttgc
    18301 ataaaaaaca cccattctat ttaatacatt aaaaatgtgt gtaatatcat ttaaatgaaa
    18361 aaatgaaggg ataaaagcaa ccatcattgc aattctaagg ctaatccaaa agactttaaa
    18421 tttgcataat ttttgtaacc atttataaat gcaggtgcat aaaccaaact aagtccaatt
    18481 acagcttgtg ctaaaatagt aaataacacc aaaggcattt cgcttaaaat gtgattaaat
    18541 gatgtcattt ttaactcctt ggtagttttg aggtagatga aaaatcgcac ttttattacc
    18601 tgaaggcaaa ctatgttttt caggcactat acataaattc ggatgcgtga tagaagcatc
    18661 aggtaaaggt gtgatagagg ctaaatttcc atgttcttct ctcagttttg ttatatcgcc
    18721 tgcttttaat gttctaaaag gacaagagtc cacgcaaatt ggatttttac cttcttttaa
    18781 tctctcataa cacccatcgc atttgctcat atgaccactt tcatggttaa attgaggtgc
    18841 gccataagga catgccatag cacaagcttt gcagcctata cacatactat catcgattgc
    18901 tactattccc cattttattt tcattgttgc accagttgga caagctttaa gacaagatgg
    18961 attagaacaa tgattgcaag aaatagaagt gtagtaagca aaaacatttt gctcaaaact
    19021 tccatcttct ttacaggtcc aatttccccc ttcagtctca aacacacggc gaaaattaac
    19081 tcccacaggc atgtttttat aatccttgca agaaagtgag caagtcctac agcctacgca
    19141 tttgctttga tctagcataa caccaaattg tgaattttct tctaatttca tctttttctc
    19201 cttaaacttt tgcaatttca actaaaatag aatgttgtcc atttccttta gaaatagcag
    19261 ttggtactat acttgccaaa gaattcacac aagttcccac atcgatacca ttttcatatt
    19321 ttgcccatgc accttgtggg gttactgcac aacctggtat gatttttgga gtaatttttg
    19381 ctatgccttg tatgattcct aagtcatttc ttacttgcac cacatcgccc gttttgatac
    19441 ttctttgctc tgcatctatg gtatttatcc aaatttcttg tggattagct tctctaattt
    19501 gtggaatttc ccaaaagcta gaatgcgttc tacctttgta gtgatagcca aaaaattgca
    19561 aaggatactt ttgttttaat ggatctaaaa tcccttctct ttggctttca aaaacaggaa
    19621 taggtactat ttgttgtcct tcttttaatt tccaagtttt ttgcatttgt gcgagttttg
    19681 tgctataaat ttctatcttt ccgctaggag tttttaaagg attattgata ggatctttta
    19741 taaaactttg taatgccact acaggtttta caggctcaaa ttttacaagt cctttttcgc
    19801 acatttcttc aaaactaggc aaaagtggat tttttttcat actttcttca taaaggtatt
    19861 ttagccaatc tttttgtgtt cttccttcgc taaattcttt ttctatgcca agtcttttag
    19921 caagttcaag acacatttta taaataggtt ttgcttcacc aactggctcg atagcttttt
    19981 gacaataaat aatataaggc ttattgctat aatatcctgc gctaggtctt ataaaatctt
    20041 cttgctctag catagttgca tcaggtaaga tataatctgc gtagttattt gacggagttc
    20101 tagttacatt aacatctatt atacactcac acaaattctc atcgcttaaa atatcatgca
    20161 cttctttaat tgtgctgtgc tgatttgtaa gacaatttcc tgctgtattg aaaataaatt
    20221 aatattttgt tttaattgtg ttgtgccacg caccccatcg ctaatatctg tcatttcttt
    20281 tccacgataa atagcatctg tgaataaaaa acaaggaata gaatctttta ttggattttt
    20341 aaaaggcata cctattatat catatgtttt acttgaccct gttcgacatc ctgtatttgt
    20401 gccttctatg ccaatatttc ctgtaataca agctagagtt gctatcgccc ttgcattttg
    20461 ttctccattt gaatgtcttt gcactcccca accttgttct ataaaacaag gctttatggt
    20521 ggcaatttct cttgcaagtt gaactatgcg gcgtgctgga tttttgtaat cttgctagcc
    20581 caatcaggag ttttttctac tccatcgttt agtcctaaac atagctttca tagcttgagt
    20641 ttttggctgc atcttgtggc agagtatttt cgctaaagcc tatggtgtat ttatcaagaa
    20701 aagttctatc aagtaaatct tcttttatca tcacataagt tagcgcagca attaaagctg
    20761 catcggttcc tggtgctata ggtatccact cattgcaatg ccctatcata gaatcattgt
    20821 atcttgggtc aatgtgaatt attttacatc cactttcttc taaggctttt tgataagcat
    20881 agcctactcc accacctccc attctagttt caacatgatt tgctctaaaa aatatagcta
    20941 attttgcaga gtgtaaagtg tatatatcgc tagcaggaga tccaccatag aaaaaattca
    21001 tagcatttga aatttgagcc gtagaataag aattatgata atttaaataa ccaccataaa
    21061 gacttaaaag tctagcccat ggaccttgtg tacagcgatt gattattgtt cctgttgttc
    21121 ctgttgcata atttatataa aaggcttcat tgccgtattt ttctttaatt tcttgcattt
    21181 tggcagaaat ttcatcaaaa gcttgttccc aagaaatagg cataaattta ccttcgcctc
    21241 tttttcccac tctttttaat ggtcttttta agcgatttgc attgtaaact ttatatcttg
    21301 aactacgccc tctaatacag gctcttgctt gacgattatc aaagctatca tcaccttcat
    21361 gatcagtact aacatattta ataattccat cttgagtatg cacttttaca ggacattttg
    21421 tttcgcaatt tacattacat ccagcccatt tgctgatcaa tggtggagtt tttaataaat
    21481 ttgcacttag acttatagga cttaaggtta agccgccaaa caaagaactc cattttaaaa
    21541 aatctctacg attttgttcc gtgttatctc cttacattta tgtgacaaaa agtaattgcg
    21601 attatagtac aaataataat tttattcaat taaaattaag actttaaaac tcctaaatat
    21661 aggctttata atgaattttt cgtttatgaa tttaacttca aaaaataaaa atttgaataa
    21721 tataatgata aaaatttatt aaaatagtat ttaaatataa atttataact aaaatataac
    21781 tttatccccc gtataggctt gcgagttgag tttttttgtt ttataatttt gtgcgttatt
    21841 aaaataaaaa ggttttttat gttgagattt ttaatttttg caatgttgtt gtttgtgaat
    21901 ttagaagcaa aaatcccaaa agatacactt attatagcag ttgaaaatga aatcgcaagg
    21961 ataaatcctg cttatagtga ggatcacgat gcagtgatta atcttgtatt ttcaggactt
    22021 acgcgttttg atgagcatat gagcttaaag cctgatttag ctgcgtcgtg gaatgttagc
    22081 aaggatggac ttagctatga tatctttttg cgtgaagatg ttttgtggca cgatggagtg
    22141 aaatttagtg ccgatgatgt taaattcagt cttgaagctt ttaaaaatcc taaaaataat
    22201 tcttctattt atgtgaattt tgaagatatt aaaagtatag aaattttaaa tccttatcat
    22261 cttaaaatca cgctttctaa accttttcct gcatttttag atgctttaag tataggaatg
    22321 cttcctaaac atttacttag tgataaagac ttaaatactg cttcttttaa tcaaaatccc
    22381 ataggcacag gtccttataa atttgtaaaa tggaaaaagg gcgaatatgt agagtttaaa
    22441 gctaatgaga atttttatct tacaaaagta aaaaccccaa gacttatcat caaacatatt
    22501 tttgatcctt cggttgcaag cgtagagctt aaaaatggca aaattgatgc ggctttgatt
    22561 gatgtttctt tattgaatat ttttaaaaag gatgaaaatt ttaaaatttt gcgtgaaaga
    22621 tctgctgatt atagagcttt aatgtttaat ttagagaatg aatttttaaa agatattcaa
    22681 ataagaaagg ctttaaatta tgctattgat aagcaaagta tagtcaaaaa tcttttgcat
    22741 gattatggtt ttgtagccaa tcatccttta gagcgttctt gggcggattc taaagctttt
    22801 aaaacttatg aatacaatcc taaaaaagcc caagatttga ttttggcttt aggttttaag
    22861 aaaaacgatg agggtatttt tgaaaaagat ggcaagattt tagaatttga aatttgggcg
    22921 atgagtaatg atcctttaag ggtaagtttg gctggaattt tgcaaagcga atttagaaaa
    22981 ataggagttg taagcaaggt ggtggctaaa cctgctggaa gttttgatta ttctaaagta
    23041 gatagttttt taataggctg gggaagtcct ttagatcctg attttcacac ttttagggta
    23101 tttgaaagtt cgcaagatag tgctttaaat gatgagggtt ggaattttgg acattatcat
    23161 gataaaaaag tggatatagc cttgcaaaaa gcaagaaaca cttcaaattt ggaagagaga
    23221 aaaaaatatt ataaagattt tatagatgct ttgtatgaaa atcctccttt tattttttta
    23281 gcctatcttg attttgcttt agtttataat aaagatttaa aaggtatcaa agcaaggact
    23341 ttaggtcatc acggagtggg ttttacttgg aatgtttatg agtggagtaa atagtgctaa
    23401 aacgcttagt ttttagtatt gtcgtagcat tttttagcac ttttttatgt tttgttttac
    23461 ttcattttag taaaggcagt atagcttatg ctaatggagt taattcacaa agtaaagaat
    23521 ttgttcaaag aatagaacaa aatttagggc ttgataagcc tttgctagag cagtataaaa
    23581 tttggctttt taaggcttta aaaggagatt taggagtttc ttttttaagt ggagaaagtg
    23641 ttttaaagct tataaaagaa agaattttta atacttttat tttgggtttt agtgccttaa
    23701 tgcttttatt tttactcagt gtttttttgg cacttttggg atattattat aaagaaagtt
    23761 ttatagataa aatcatcact tttttagctt ttaatttttt tgctttacct ccttttgttt
    23821 tggctttatt gtttgttttg atttttggaa ttttttggaa aattttgcct gttatgggaa
    23881 gtagtgatat aggctttgaa gatgattttt taaatcgttt agagcatttg attttgcctg
    23941 ttttggtgct cgttttatca catttggcgt tatttttaag gattgctaga aattttatca
    24001 atgaaagttt ttctcaaatt tttattcaaa atttatacgc tagagcttta agggagaaag
    24061 atatttattt tttagttttg aaatattctt taagtcctat tgtggcttat tttgggggaa
    24121 gtgctttaag ttttatgatg ggaacttatg tggtagaaag tgtctttgct tacgaggggc
    24181 ttgggtcttt actttttaaa agtattattt ttaaagatta tcctgttgta cttgcactta
    24241 tattttttag cgttttgctt gcaacatttt ttacattttt aagtgatatt gtagctagga
    24301 ttttaaatcc tagattaaga aggcttgatt ttgtttaaat ttcttatcat tcttgcgcct
    24361 ttaatttttt tgtttttatg cgccttgttt gcaccttttt tggctccttt tgatatttta
    24421 agcactcatt tagaaaattt gcatcaagct cctaatttta cttatatttt agggactgat
    24481 tttttaggca gagatttgtt ttctcgtttg ctttttgctt tgagaaattc tttgattata
    24541 ggtgttggtg gatctttatt gtctattatc tttgctttgt gctatttgtt tttagcgcga
    24601 tgtttttttt acgttttttg gatgcgtatt ttagagtttt ttttagcctt gcctgctttt
    24661 ttacttatga tgttttttca aagtatgata acttctgatg tgtttttgat gattttttta
    24721 atcgctttaa ttcattggtg tttcatagca agaattatag aaagtgaatt aaaaagactt
    24781 gaaaatttag atttttacaa agcaaatata gtgcttggaa gaactaaatt tagagctttt
    24841 tttaaagatt taatacctgc tttaaaaaca ctgattttta cactttttat atttaatatc
    24901 gttcatgcta tagccacaga agctactttg agtttttttg gactgggttt aggatttgaa
    24961 attccaactt taggtactct tttgagtgag tcttcaaaag tagtttttat aggtgcttgg
    25021 tggataatac tttttccact tttaagcttg cttttgttgt ttttacctct tttatggttg
    25081 ggtaattttt tacaaaaaat ttggggtata agatcttgaa ggtaagaaat ttaaatatca
    25141 gtttgaagaa taatttattg cttaaggata ttaatttaga tataaaaaca ggcaaaactt
    25201 taatgatact aggacaaagt ggagtgggta aaagtttgtt gggaaaagct ttggtaagac
    25261 ttttagattc taatttcaca ataagttttg atgaattaag ttttcataat tcttgtattt
    25321 ttaattttaa caaagaagag cttagaaatt ttcgttctaa ggtggcactt gttttgcaag
    25381 atgcagagct tagtctttat ccttatttgg atattggaaa tttatgtcat cttgttttaa
    25441 aaactcatac aaaattaaaa caaaaagaaa gaaaagatta cgctttttct tattttcaaa
    25501 aattaggatt tgaaaatctt gatcgtttgt ggcattctta tgctaatgaa ttaagtttgg
    25561 gtatggcaag aagggtgagc ctagctttgg cattattaaa tcaaccccaa attttaattt
    25621 gtgatgaaat cacagcttct ttggataaaa aaaacgcttc aaagatcata tcgattttag
    25681 aagaattaaa aaatactaca gccttagttt gtatcactca tgatttaaat ttggtaaatt
    25741 ctttagcaga tgaaattctt atgctagaaa aaaatagttc aaatttatat agcttagatg
    25801 agtttttaag gtattataat gcttaaagtt tgtaatttaa gtaagtttta tgagcttaaa
    25861 aagcattggt atttaaaaaa agaaagacat attatttttg ataatgtcaa tttttcttta
    25921 aatgaaaatg acaatttaat aattttaggt aaaagtggtg caggtaaaag cacattagct
    25981 agaattcttt gttttttaga agatccaagt gaaggtgagg tatggtatga aaatcttaac
    26041 ttgcacaagc ttgataaaaa caaacaaaga cttttaagaa agcaaattca gtattgcttt
    26101 caagatcaaa aaatggcttt aaacccttat aaaaaaatca aaaatcttat acaagatggt
    26161 ttggaaaatt ttaatttaca aaagaatgat gacttgattt tagaattttt tgattttttt
    26221 agtctaaaaa agcaaatttt aaaacaaaaa ccctatgagt taagtggagg agaagccacg
    26281 cgtgtaggtc ttatccgtgc tttggtttta aatcctaaat tgttgatttt agatgaaatt
    26341 acttcagcac ttgatattaa aacttctaaa gaaattttaa cttttttata tgactatcag
    26401 caaaaaaata atatttctta tatatttata acccatcaaa gtgatctttt ttataaattt
    26461 aatcataaaa aattaaaact ttaaaaaata ttttttaata taagtttcaa tatagaaagt
    26521 ttagagtaaa ataaagaaaa gtgtaaattt aatttttgtt gtggagtgat taaagtgctt
    26581 taaaaaagga gaataaatgt ctcatataga tgcttcgcat ccttattttg gtattttttt
    26641 aatgctagta cttgctagtg ttattttttt cggactggtt tttttagctt caaaaatcgg
    26701 taataatttt gccgcaaaaa atcgcaaaaa attaggactt ggaatttatg aatgtggtcc
    26761 tattcctgtt aaacaagcta acaagattaa ctctcaattt ttcatcatcg ccttaatctt
    26821 catacttttg gatatagaag ttgtgttttt atttccttgg gctttgattt ttaaagattt
    26881 aggttggttt gggcttttag aagtttttat ttttatcgta cttttaggag ttggattttt
    26941 atatgcttat aaaaaaggag cgtttgcatg gcagagcatc aagtaaatta tgcaagtggt
    27001 ttgcccgtag ttttaactag tgttgataaa ctagttcaat ggggcaggag taattcttta
    27061 tgggctttat cttatggact tgcctgttgt gcgattgaga tgatggcggc tgggggttca
    27121 agatatgatt ttgatagatt tggaacgatt tttagagctt caccacgcca tagtgaagtg
    27181 atgattatcg caggaacttt atgtaaaaag catgctgaat ttacaagaag actttacgat
    27241 caaatgcctg atcctaaatg ggtgatttct atgggaagtt gtgccaatac aggcggtatg
    27301 tttaatactt attctacggt tcaaggagtg gatagaatta tacctgtaga tatttatgtg
    27361 ccaggctgtg ctccacgccc cgaaagtttt cagtttgctt tgatgatttt gcaaaaaaag
    27421 atccgcaaag aaaaagcaag tcgtaaaatc gcacctaaaa ggttggtata atgagaaagt
    27481 atagcgataa aaaaaatgct caaactcaaa attattacaa agatagattt tatcacgcgc
    27541 cacacactgt aaaatctgat gttaatgaaa gtgtttttaa agaggatttt gaagttttaa
    27601 aaactcaagt agaaatttta aattcctttg tagagcttga tttttgggta atagaaatta
    27661 aaaaagaaga caatgttaaa accttgcaaa tgcttaaaac tttagggtat ttaagtttta
    27721 cagaggcaag tgctattgat tttgtagcag ataaaaatgg ttttgaagtg ttttatcagc
    27781 ttttaaattt agaaaaaaga ttaagagtga gaataaaaac ttttgtaggc gtaaaagagc
    27841 gtttgcaaag cgtggctcat atttttaaag gagcaaattg gagtgagaga gaaatttatg
    27901 atatgtttgg aattttcatc ataaatcatc ccaatttaaa acgcatttta atgcctgatg
    27961 attggtttgg acatccgctt ttgaaaactt atcctttaaa gggcgatgag tttgcaagat
    28021 ggtatgagat tgataaaatt tttggcaaag aataccgcga agtagtgggc gaagaacaaa
    28081 gagattctgg ttttgctgat gataaagata cgctaaattt tgcaagactt tatcatgaag
    28141 tgccaaaagg tggtcaaaag aaggaaattt cctttaaaca agaatatcaa gaagatgaag
    28201 gcgtggcttt tgtaaaaaaa gtaaaacgtg atgaagcaaa aattttagag aaaaggcgtt
    28261 aaaatgcaaa ttcctagcaa gttaaaacct tattatgaaa atatagcttt tgagcaagaa
    28321 gactcaaaaa tgattatcaa cttaggccct caacaccctt cagcacacgg aaatttacgc
    28381 cttattttag aacttgatgg agagcaagtt gtaaaagcgc gtccttgtat aggttatatg
    28441 catcgtggta tggaaaaaat ggctgaaaat atgatttatc aagagtttat tcctactact
    28501 gatagaatgg attatatcgc tgcttcagcg aataattatg cttattgtgc agcggttgaa
    28561 aagctttgtg gtttagagat tccacgccgt gccgcagtga tacgcatgat acttttagaa
    28621 ttaaaccgta tcacatcaca tttgctttgg cttgccactc atgcgcttga tattggtgcg
    28681 atgagtgtgt ttttatactg ctttagagaa cgtgagtatg ttttggattt gatagaaaag
    28741 tattgtggtg caaggcttac gcattcttct atgagaatag gtggggttat gcttgattta
    28801 cctgagaatt atttagaaga aatgcttgca ttttgcgata aatttccaaa tgatttaaaa
    28861 gattatgaag atcttttaga tgataataga atttggcgtt taagaactga aaatgtaggt
    28921 gtagttacta aagaacaagc tttaaactgg ggttgtacgg gtgtgatgct aagaggaagt
    28981 ggcataaaat acgatatacg caaagaagag ccttatttgc tttataatga agtcgaattt
    29041 ggcgtgcctt atgctacgca aggggattct tatgcaagat ataaagttta tatgcaagaa
    29101 tttcgtgaaa gtttgaaaat ccttagacaa tgtgccatgc tttataaaga tactccacct
    29161 gaaattttag ctacgcatcc tgagtatgta agtgcttcaa aggaacaaat tttaacgcag
    29221 aattattctt taatgcagca ttttgtttta atcactcaag gtttaaaacc ccctaaaggc
    29281 gaagtttatg tgcctactga aagtccaaaa ggtgagcttg gcttttttat ccatagtgat
    29341 ggtacaggaa gaccttatcg tttaaaggct agaacgccta gttattggca ttgtgcgttt
    29401 tttgaagaaa tgcttgtagg tacttattta gctgatgttg tagccattat gggtaatgta
    29461 aatatagttt taggtgagat agatcgatga gaagggtaga tttaagaaaa agcaaagagc
    29521 tttttgaaga tttagcacaa atcataaaag aagcaaaaca aggtgaggtt ttagtggtgc
    29581 tttttgaaat cggcgatttt tctcctgttg aaaaaagttt ttcttttgta aaagaacaag
    29641 gctgtgagct tttaaattct ttgaaattta atcaagtcga ttggactatt gttataaaaa
    29701 aggagagagt atgatttatg ataatgctct ttgtttttta gatatgccaa gccttaaaaa
    29761 caaaaattta tgtgaaaaaa taggtgtaaa tagtattaat atttcttgtt tggaagataa
    29821 aaacttaaaa gctaaatttt acaaatgcga aattgcaagt ttgagttttg ttttggcctt
    29881 gctttgtaaa ttaagcgatg aaggacaatt ttgcgattta gatgagggat atttaagtgc
    29941 tgaatcttgt tttggagagg aagaagcagg cgaagtgctt gcttttttaa aagagactaa
    30001 gtatttaatt atagataaaa atatccattc ttataaagat agtgaaaata tcaaatattt
    30061 tttgaatttc ctaagtgtaa aatatggatt aaagatttta gatagcgatg aagaagaatg
    30121 cgattttaaa aaggcaaaat taaacaccct aaaagaactc gataattatg acgggttagt
    30181 gctttttaga gcaaatttgc aagataaaaa tttacattgt tcaaagcaat ttttacaaat
    30241 tgcaaaatgc aaagatcaaa gtgaagttga aattttggct aaagatttta gtcttaaaac
    30301 caagctttgt ttagatgaaa atttacaagg cactatagct tttttaaatt atgaaaacaa
    30361 tggttttgat tttactccaa ttcgcataaa ggaagcaaaa tgacagttaa gattaatggt
    30421 atagattgcg cctttgaaga aggcgaatat attttaaata tagcaagaag aaatgatatt
    30481 tttatcccag cgatttgcta tctttcgggc tgtagtccta ctttggcttg tcgtatgtgt
    30541 atggttgaag ctgatggtaa aaaggtatat tcttgcaata ctaaagcaaa agagggcatg
    30601 gttgtagaaa gtgatttaca aaatctttgg gatgaaagaa atgagatcat gcaagcttat
    30661 tgtatcaatc atcctttaga atgtggagtt tgtgataaat caggcgagtg tgaattgcaa
    30721 aatttcactc ataaaagtcg tgtaaatgtt caaaaatatt ggattaaaga cacgcataaa
    30781 ccgcataaac attggggaat gattaattac gatcccgcac tttgcatagt atgtgagcgt
    30841 tgtattacag tttgtaagga taaaatcgga gaaagtgctt taaagactgt tcctcgtggc
    30901 ggagatagtg tggataatag ctttaaagag agcatgggaa aagatgctta tgcgatttgg
    30961 actaaatttc aaaaaagttt gataggccct acaaatggcg acacgcttga ttgttcattt
    31021 tgtggagaat gtacaagcgt atgcccaaca ggagctttaa taggttcgaa atttcaatac
    31081 acttcaaata tttgggaact taaaagaatc cctgcttcaa atccacattc aagcgattgc
    31141 gagttgatgt attatgatat taagcaaagc ggcattagca atcaaaaaga aaaaatttat
    31201 cgtgtgagta atgattttgc ctttgcgagt ttaaataagg ctgcaagatt tgcttttgat
    31261 acgcaaaatg aggcggataa agatgaaaaa gcctttaaag aacttgtgga gctttttgag
    31321 aaaaatgaaa ttaaaaacat taaatttaat agttttatta ccaatgaaga agctttgatt
    31381 ttacaaaatt taaaaaagaa atttaatctt tctttaatca atgaagaagc tttgaaattt
    31441 aaagaatttt tacaagaatt tatcgctaat tctggtgagt tttatagcgc taatactcaa
    31501 gatataacaa aaagtgattt tttggttgtg gctggaatgc ttttaagata tgatgctcca
    31561 acgcttagtt ataaaatcaa taatgcttta gtgatgaata aaggctcagg gctttatttt
    31621 catcctatgg aagatatggg tatagcaaaa tattctaaaa attttatctc gcacattcat
    31681 aaaaatggcg atgaagagca aattttatat tttttacttc aaaaatttag ccaagatgaa
    31741 ggtatcaaaa ctcatttagc agagtttttt gttagtgaaa ataaagaaat agaagaaagt
    31801 atcaacgaag aagttgtaga acaagtcata gaaaaagatg aagaaggcaa tgaaattcaa
    31861 aaagaagtaa aaaaagtcgt gcctaagaaa gtgaaaaaca acatagaagt acaacgctct
    31921 gtttttgcta aaaatttagg catagatgaa gataaattag aagatttatt gcttaaaaaa
    31981 gcaaatttta ctcttgttat agggagtgat ttttattttc ataaaaatgc gaaaaaactt
    32041 gctaaattac ttgctttgat ccaaaatacc actcctttta aagtcttttt aaatcctacg
    32101 catactaata ccttaggtgt ggctatgatt tgcgatttgg ataacaatac acaagaaggc
    32161 aagactttag gctacaatga aaaaggtgat tttagttttt cttatgaaga gcatgcaaat
    32221 ttagctagtg cgagtttaaa tcagcaagaa ggaacttttt taaattatga taaaagagtg
    32281 gtaccaacta acgctgcttt agaatttaag ggatattttt taaatgattt ggctaatgct
    32341 ttaggttttg atgaggaata tactataaat tatactaaga gactccctat aaataaaggt
    32401 ttttctccga ttgattttga tcatttagac aatttttata ccaatgcagg cgattgtaaa
    32461 aggggatatg agcttaattt agaatgtttc aaacaagttg ctaaaaaaga attcatctct
    32521 ccaaattttg aaaatttaag cctaaaagaa gatgaaattt tgctttatag tgctaatcct
    32581 agctatcaat ttggtagatt ttcaaatcgt gctagtgcga ttaatgaggt gattttttta
    32641 ggtgtaagtg aaaatttagc taaagagaaa aatttaaaag ataaagatct tgtaaaactt
    32701 aaaataaaag ataaagaatt aagccttagt gtgcgtgtgg ataaggatat aaaaaatgga
    32761 gctttcttgc cgtattttga tgaaaaactt gacacgctaa gcttttttga tgaaagattt
    32821 gttgtggcga atttagaaaa attaggagca aaccatgagt gattttgctt tttttgcttt
    32881 agagactttg attaaatgta ttattatcat tgcaatattt gcgagtttag caggtcttgc
    32941 aacttatgct gaaagaaagg ttttagctta ttttcaaaga cgcatagggc ctgatatggt
    33001 agggcctttt gggcttattc aacttgtagc tgatatgata aagcttttta ctaaagaaga
    33061 tataatccct tcaaattcgc aaaaatttat ttttgctata gcacctttga tttctgctat
    33121 ttgtgctttt atttctttag cagctattcc tatgctacct gaatttactt tatttggaag
    33181 ggttattcag cctatagtgg cagatatcaa tgtagctttg ctttttgtca tcggtacttc
    33241 aggactttgc ttttatgcgg tgtttttggg tggacttgca agtaataata aatggtcgat
    33301 tttaggggct gcaagagggc ttgtagcgat tatttcctat gaaagcgtag gagctttagc
    33361 tttgattgct attataatgc ttgtaggttc tttttctttg gtggatatta acaattatca
    33421 aagcgatgga tttttttctt ggcttatttt taaacaacct ttggcttttg tgctttttat
    33481 aattgcttta tttatagaga ctaatagaac tccgctttgt ttgacggaaa atgatgctga
    33541 aattgtagcg ggttatggaa cggagtattc gggtttaaga tggggtatgt ttttcatagg
    33601 tgaatatact tctatgatag ctggagctat tttggtcact cttttgtttt tagggggttt
    33661 taatagcttt tggattattc ctggttggat tatgatgata gtaaaatcaa gttttatttt
    33721 cttttggtat ttttgggcaa gagctgcttt tccgcaattg cgtccagatc aagtgatgaa
    33781 aatgtgctat ttgatcttaa tccctttagc tgttttaaac cttttaatca ctgctttgac
    33841 agttctttta taggagtttg atatgaaaaa ttattattta gtagatgaga aaagaaaaac
    33901 tcctgttagc acttgggaga aaatttcaca agctttgcgt agaagcgtta aactagagct
    33961 ttttgtaggg ctttttgtga tgatgagaga attacttaag agaaataata gcgctacgat
    34021 taaatatcct tttgaaaagg taaagcttga caatcgttac cgtgctgttc atcgtttgat
    34081 gcgttttata gaaagcgaaa atgaaagatg tataggttgt gggctttgcg aaaaaatttg
    34141 cattagcaat tgtattagaa tggaaacttc tttagatgaa aatgggcgta aaaaagtagg
    34201 aaattatagt attaatttag ggcgttgtat ttattgtggt ttttgtgctg aggtttgtcc
    34261 tgaacttgct atagtacatg gaatagagta tgaaaatgca gccgagcaaa ggtcttattt
    34321 tggctataag caagattttt taactcctat tgataagctt aaaaatcaag ttgaatttga
    34381 aggagcagga agtcttagaa aggatgcaaa tttgtgggtt aaaaaaacac caaattatta
    34441 tgatgtgatg caagaaagag ccttagaaaa tcaaaacaca caagagcaag gagaaaataa
    34501 atgatagaaa atttggcttt tgtatttttt agtgtagtgg ttttaggctt ttttggcatt
    34561 gcggttttaa gtaaaaatat gctttattct ctttctgctt tagcgggtgg aatggtgttt
    34621 ttatcgggat tttatttttt gcttgatgca gagtttttag gcgtgataca aattattgtt
    34681 tatagtggag ctgtacttgg actttatagt tttgcgatga tgttttttga tgcttctaaa
    34741 gaatttaaag aacaacttaa agctaaaaaa agttttttta ctttggtggt tttaagtgcg
    34801 attttacttt tgactatgct tataggtttt aaataccaaa atatcagcac ggatttgcct
    34861 ttaaatgatc ctgctttgtt tgattttaat aaacaactgg ctttagcgat tttttcaaaa
    34921 tatcttttag cttttgagtt tatagctatt ttgcttttga tcgctttagt ttgtgctatc
    34981 actcttactc ataaagagct tacaaaggaa aaacaatgat agaaaagtat tttttcgttg
    35041 ctattttaat gtttgtcata gggcttgtag ggattttaaa aagacaaaat ctcattatgc
    35101 tttttatttc gagtgaaatt ttattaaata gtgctaattt agccttagta gcggcttcta
    35161 aaatgcacaa tgatttaaat ggacaggttt ttgcactttt tatcatgggt gtagcggctt
    35221 gtgaagtagc tgttggtgta gctttgtgcg tgctttggta tagaagaaaa ggcactttgg
    35281 aattaaaaag cttaaaagaa gtggaggctt agtatgcaaa atttggcttt gatttctctt
    35341 tttagtcctt ttgtagcttt tttgtttgca agttgttttg ctttgagtga gaaaaaacaa
    35401 ttcgtaggga tattttgttc acttctagta gctttgagta ctttttgttc tttgtatttg
    35461 cttttttgca atgaagcttt taatgtgagt ttgtttgaat ggtttgctgg agtaaatttt
    35521 ggttttgata tagatgctat ttcgcttact atgatgagta ttgtaggtat tgtagccact
    35581 tgtgtgcatt tttatagtat tttttatatg gctcatgatg aaggttttaa taaatttttt
    35641 gcttatttgg ggctttttgt cttttctatg ctttttttag tcatgagtga taatttttta
    35701 ggacttttcg taggttggga aggcgttggg ctttgctctt ggttgctcat aggtttttgg
    35761 tataaaaatg atacttattc ttttgcggct aatgaagctt ttattatgaa tcgtattgcg
    35821 gatttgggta tgcttttagg aattttttgg ctttatttgc aagcaggaac tttaaaatat
    35881 gatgaagttt tttccatggc acaaagccta gatcacaatg ctttgatctt aatcgcaact
    35941 tgtttattta taggggctat gggaaaatct gcacaatttc cttttcacac ttggcttgct
    36001 gatgctatgg cagggccaac tcctgtttct gcattaatcc atgcagcaac catggtaaca
    36061 gcgggggttt atttggtaat tcgtgcgagt acgctttatg atttagttcc tgaagtttct
    36121 tatattattg ccttactcgg agcttttgta gcgatttttg cagcctctat ggctttggtg
    36181 gttagggatt taaaacgtat tattgcttac tctaccttat cgcaacttgg atatatgttt
    36241 gtggctgcag gacttggggc ttatggtata gctttatttc acttagctac gcatgctttt
    36301 tttaaatctt tacttttctt aggcgctgga aatgtaatgc atgctatgaa tgataaatta
    36361 gacattaaaa aaatgggtgg actttttaaa cctttaaaaa ttacagctat tttaatgtgt
    36421 ataggatctt tagctttagc aggaatttat ccttttgcag gatttttctc taaagatttg
    36481 attttgggat attctttcat ttcttttcac catggtattt ttttagtgct tttaatcgca
    36541 gcttttttaa cagcatttta tagctttaga cttttaatgt tggtattttt tacccctgca
    36601 agacatgatg aacatccgaa tgaagcaagt aaaatagcac tcttggctat gagtcctttg
    36661 atggttttag ctattattgc aggatttttt gaacatagtt tttttgaata tttaagcaca
    36721 aaattagttt ttattgatgc acaaaatcaa attgtaatga tttgtgcgag tgtagcagct
    36781 attttgggtg taattttggc tatttttgct tataaaaatt cttggtttaa ggaaagtatt
    36841 gaagaaaata aaattcacaa acttttaagt aatgattatt ttattcctag attttatcat
    36901 caatttatcg tttcaaaata tgaaagttta tgtgcgattt taaagcattg tgatctttat
    36961 atttttgata gaatagttga aaaaattgct ttgtattctc aaattatttc acaaaaaatg
    37021 attatgccaa acagcttaaa cttaatgctt agatttttgg tggcagcttt tgtgattttg
    37081 ttgattttgg tatggatggt gtaaaatgct aaattatttg atattttttc ctttaatttc
    37141 tgcttttgtg gttttgcttt taaatcgtgg aggcgttaag gtttttagcg ttgttgtaag
    37201 ttttatgatt ttggctttaa atttggatat ttttgcagat tttttacaag gggtaagctt
    37261 tgattataat ctctctttta aaattttgaa attttttagc tttcatgtag gagtagacag
    37321 tattgcactt gtattgatgc ttttaagttc tttgatgata tttttaagct ttttattttt
    37381 aaagctggaa caaaaagcac ttgtatcttg tatattcttt ttagaatttg ctattatggg
    37441 actttttagt gcaaaagatg gtttgttgtt ttatgttttt tgggaatttt ctcttttgcc
    37501 tttactttat attatgggag tttatggtaa agattttaga gcaggggtga aattttttat
    37561 ctatgctttt gcgggttcaa ttttaatgct tgtagcattg atttatcaag cttatttaaa
    37621 ttatcagctt ttaaatatct tcacttttga cttggaaatt tggaaaaata atgcctcagc
    37681 agtaaatttt acagagcaac ttttactttt tggagcattt tttatcgctt ttgctatcaa
    37741 agctccttta tttccacttc atacttgggc acctaaggtt tatgcaaatt cgcctatact
    37801 tgtttctgta atgcttgtag tttttaaaat ggctcctttt ggatttttac ttttttgttt
    37861 accacttttt ccagatgcga gtgtgtattt tatgccttta attgtagctt tatgtatagt
    37921 aagtatcgtt tataatgctt taattgctta tagagcagaa aatattaaag aattgattgc
    37981 ttatagttct atttcacatc ttggtgtgat gattttggga attttttctt taaatgcttt
    38041 gggtattagt ggtgcggttt tttatatgtt tgcacatggt attgtaacgg gagctttatt
    38101 tttaatggtt gaacttttat accaaagata tcatacttat gatatttctt tttaccattc
    38161 tttagccaaa aaagcacctt tattttcaat tttctttatg ctcattttac ttgcgagtgt
    38221 ttctttgcct ttaactgttt cttttgtggg agagttttta attcttttag gtatagcaaa
    38281 gattaattta ttttacgctt tgttggcagg tttggtgatt attttaggag cgatttatat
    38341 gttcgcagta tttagaaaaa tatttttcat gcaaaaacaa agctttatag agggtttttc
    38401 tttacgtttt agagaaatag tagcgcttgt gtgcattgta gtaatgattt ttggactagg
    38461 gcttatgcca aatatacttt taaagccgat acaaaaagat gtggataatc ttataaaaac
    38521 aatgaatatt agagctgttg agcaaaatac tttagatttt ttatctaaaa taggagaggc
    38581 aaatgttaaa taatttttta aatttagaac ttttaaatat aagcttatct tatccatttt
    38641 tatttttaat tacaactgca atagttcttt tgctttgctc tggtttttgg aaatttcatc
    38701 gatcgtttta tatcggtata agttctttat ctttaattgt aagtgctttt ttgattttaa
    38761 ataatgcaaa tgctcaaggc ttagaagcaa aagctttttt ggccacttta aataatgata
    38821 ttgtttcatt ttatgcttct ttggtaattt tgtgtttttc atttttatat cttttaatgc
    38881 aaaaagaaga aaatcaaggt gaattttatg ctttattttt atttatgatt gcatctttgc
    38941 ttttgatggt ttcaagctca aatttagtac ttatttttat aggacttgaa agttcttctt
    39001 tagcgcttta tactttaata gcaacgcgcg gaagtgataa tgctatttca agtgcgataa
    39061 aatactttag tgtagcggct gtaggagctg ggttttttgt tatggctgta gcttttattt
    39121 atttaaaaac aggaacttta gatttatctg ctaatttagc attaaaaaat gagtttcaaa
    39181 aagatcccat gcttttgggt gctggagtga tgatttttgt tctttgtgca atcaagcttt
    39241 ctttggcacc ttttcatttt tggcttaaag atgtgtatta tgcagcacat acaaatttgg
    39301 ttgcttttat ttcagttgtg ccaaaagttg ccatgttggt tgtggttatt cgtttgtttg
    39361 attttttaaa taatacaggt tttgaatata tcataatagt tctagcgatt ttttctatgc
    39421 ttataggtgc ttttgcggct ctaagtcaaa acaatatcaa aaaaatgttt gcttatagtt
    39481 ctgtagtgca ttcttctttg gttttggtag cttgcattcc tttattaaaa gaacaaaatt
    39541 ttgatggaat tttgcttgct atttttggat attggacttt atttgctttt gcaaattatg
    39601 ctgtatttat gattttaagc aattatgaga ataattctta tgagagttta aatgggcttt
    39661 tggttaaaaa acctttaatt gctttttgtt taagcattag tgtgctttct ttagcaggta
    39721 tcccgccttt tggagtgttt tggggtaaat ttatgatttt aaatacagca attttaaatg
    39781 gatattggta tttggcgctt tttgtggctt tatcttctgt tattatgctt tatgcgtatt
    39841 taaagatttt aattcatgtt ttatttatga aaaatgatag ggttcataat attaagttta
    39901 gttttataca aaattttatt ttagcttttt gtgtttgtgt aagcactttt gctatattgt
    39961 taatgttata agagttttgc tataattatt ttatgagaat attattttta attttattaa
    40021 gttttttaaa tgcttttgct tttgagcttg ttttaaacac gggtcgcgaa aataatcaag
    40081 cttttgcagt tttacatgcg agtaatgatt tagaatttac atgtcaaaaa tttattaccg
    40141 aagcaaaagt tcattttgaa tgtgatattg caggtatggt tgataataaa ttaaaagatc
    40201 agagtttttc tgcttttgat ttaaaattta tacaagaagc tcaaaaaatt aaaatgatca
    40261 ttttgccaaa aatacaagca agaatgtttg acacttctca aaatatttat atagataaag
    40321 aactcagttc atcaagttcg cataaaagta aggcttttac ttttattttt acaccagaac
    40381 tagcacctat taaagactat gatggacttg attttaatat caattttcca catgagagtt
    40441 tgccttatgt tggagctttg gatttaaatt ctgatcctgt tgttattcct caaagtgcag
    40501 atatcaatac ttatttacgc atcaaaaaag aatacgataa ggctaattac aatcaagtgg
    40561 tgattgatgc acaaaatgct atcaatagat atcgtggcag tatttttact agtgaattta
    40621 tactttataa attaagagct caaaataaac tttacactca agatccaagt atacgcgatc
    40681 agcaaatttt agaaaagatg attgatgatg ctaaaaattg gatgcgtact tttacaagtg
    40741 ataaaaattt ttcagaagtt ttacatataa tgttaaaaac ttatatcgct ttagctcagc
    40801 gtgctgatgt agagtataca atgtcgattt tggataatga acaacctaat aattatttta
    40861 ctcagttatc aaaacttgat tatgcagatt atatttataa tttaaatgaa a
//
LOCUS       DARGEX010000005        28991 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.005, whole genome shotgun sequence.
ACCESSION   DARGEX010000005 DARGEX010000000
VERSION     DARGEX010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.005"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            32..679
                     /locus_tag="SF010_000218"
     CDS             32..679
                     /locus_tag="SF010_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG8229186.1"
                     /translation="MKKGIFLLVFLSIFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            696..3071
                     /gene="lon"
                     /locus_tag="SF010_000219"
     CDS             696..3071
                     /gene="lon"
                     /locus_tag="SF010_000219"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG8229187.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDLSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(3131..3391)
                     /gene="rpsR"
                     /locus_tag="SF010_000220"
     CDS             complement(3131..3391)
                     /gene="rpsR"
                     /locus_tag="SF010_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG8229188.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(3402..3950)
                     /locus_tag="SF010_000221"
     CDS             complement(3402..3950)
                     /locus_tag="SF010_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8229189.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPTPQRNQNPQ
                     HEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(3959..4336)
                     /locus_tag="SF010_000222"
     CDS             complement(3959..4336)
                     /locus_tag="SF010_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG8229190.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(4423..5289)
                     /locus_tag="SF010_000223"
     CDS             complement(4423..5289)
                     /locus_tag="SF010_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG8229191.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQTTLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(5282..6388)
                     /gene="rseP"
                     /locus_tag="SF010_000224"
     CDS             complement(5282..6388)
                     /gene="rseP"
                     /locus_tag="SF010_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG8229192.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIASNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(6385..6921)
                     /gene="pgsA"
                     /locus_tag="SF010_000225"
     CDS             complement(6385..6921)
                     /gene="pgsA"
                     /locus_tag="SF010_000225"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG8229193.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(7047..7652)
                     /locus_tag="SF010_000226"
     CDS             complement(7047..7652)
                     /locus_tag="SF010_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8229194.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEITRLSPSSLGLE
                     PWKFIVMQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLNIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(7652..8272)
                     /locus_tag="SF010_000227"
     CDS             complement(7652..8272)
                     /locus_tag="SF010_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8229195.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDDFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(8336..8761)
                     /locus_tag="SF010_000228"
     CDS             complement(8336..8761)
                     /locus_tag="SF010_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8229196.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(8773..9861)
                     /locus_tag="SF010_000229"
     CDS             complement(8773..9861)
                     /locus_tag="SF010_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG8229197.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAVSGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            9960..12713
                     /gene="ileS"
                     /locus_tag="SF010_000230"
     CDS             9960..12713
                     /gene="ileS"
                     /locus_tag="SF010_000230"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG8229198.1"
                     /translation="MDYKETLLLPSTSFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQAEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDEFFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDTGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            12707..12817
                     /locus_tag="SF010_000231"
     CDS             12707..12817
                     /locus_tag="SF010_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229199.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            12814..14175
                     /gene="gatA"
                     /locus_tag="SF010_000232"
     CDS             12814..14175
                     /gene="gatA"
                     /locus_tag="SF010_000232"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG8229200.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKVKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            14185..15642
                     /gene="guaB"
                     /locus_tag="SF010_000233"
     CDS             14185..15642
                     /gene="guaB"
                     /locus_tag="SF010_000233"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG8229201.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            15639..15812
                     /gene="xseB"
                     /locus_tag="SF010_000234"
     CDS             15639..15812
                     /gene="xseB"
                     /locus_tag="SF010_000234"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG8229202.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            15805..16587
                     /locus_tag="SF010_000235"
     CDS             15805..16587
                     /locus_tag="SF010_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG8229203.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKIIKEFKN"
     gene            16708..18006
                     /locus_tag="SF010_000236"
     CDS             16708..18006
                     /locus_tag="SF010_000236"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG8229204.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLGDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKNLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQQYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYTAGEEPIGLDLEAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            17999..18349
                     /locus_tag="SF010_000237"
     CDS             17999..18349
                     /locus_tag="SF010_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229205.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            18339..20549
                     /locus_tag="SF010_000238"
     CDS             18339..20549
                     /locus_tag="SF010_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG8229206.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLVKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            20558..24397
                     /locus_tag="SF010_000239"
     CDS             20558..24397
                     /locus_tag="SF010_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8229207.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLHEMLSKNSKALRVVDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLTELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLIDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKI
                     NNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLE
                     VFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYI
                     SFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIEL
                     DRLEKEKEKILQKYLFS"
     gene            24440..25141
                     /locus_tag="SF010_000240"
     CDS             24440..25141
                     /locus_tag="SF010_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG8229208.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            25134..25733
                     /locus_tag="SF010_000241"
     CDS             25134..25733
                     /locus_tag="SF010_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG8229209.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSYVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            25737..26834
                     /gene="dapE"
                     /locus_tag="SF010_000242"
     CDS             25737..26834
                     /gene="dapE"
                     /locus_tag="SF010_000242"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG8229210.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSSDAFVPMEKEGFIYARGAQDMKSGVA
                     AFVDAAKNVDFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            26844..28907
                     /locus_tag="SF010_000243"
     CDS             26844..28907
                     /locus_tag="SF010_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8229211.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIIDKIQ
                     ITVPYIIIEVKKPKLKDSKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKITFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
BASE COUNT        10529 a         3733 c         5165 g         9564 t
ORIGIN      
        1 atatttttga gaatataaat caaggtgaag tatgaaaaaa ggtatttttt tattggtttt
       61 tttaagtatt ttttttagtg cgtgtagtac gaaaaatgat gaaggtttat acaatcttag
      121 tgctagtgag tggtataagc aaattattaa agatttgcag gacaaggatt tggaaaaagc
      181 tgatgatcat tataatggta tggcaagtga gcatgttgcc gatcctttat tagaaactac
      241 tttaattatt ttagcacaag ctcatatgga tgaagaggaa tataagttag ctgaatttta
      301 tttagatgaa tataataaaa aatttggaaa ttcacgcaat gctgattata ttcgttatct
      361 taaaattaag gcaaaatttg atgcatttgc agtgccaaat cgtaatcagg ctttaatgct
      421 tgaaagccaa aaagaaatag atactttttt gaaagattat ccttatacag aatatgaacc
      481 tttggttcaa acaatgctta caaaatttaa tttagcggtt ttttatctta atagtactat
      541 agaaaatcta taccagcgca tagggcatga tgaaagtgca caaatttata aacaaagact
      601 tcaagaaagt gaattttatc agcaaagtat tatcaaacct gagcttcctt ggtatagaag
      661 tatatttgaa agattttaat aaacaaggaa aataaatgca gattgaagag atacaaaatt
      721 atccagcaaa tttaccagta ttggttgaag atgaattatt tttatatcct tttatgataa
      781 ctcctatttt tattaacgat ttatccaata tgaaagcttt agatctcgcg attaaaaatg
      841 atagcatgct ttttgttgca ccttcaaagt tggaaaatgg aagaaatttt gatgaaattt
      901 ataattgcgg agtgattggg actatcatgc gaaaagttcc tttgcctgat ggaagagtga
      961 aaatactttt tcaaggatat gccaagggta aaattataga gcaaatttct aataaacctt
     1021 tagaagccaa gatagaactt ataaaagaag actttttaga aggaactaaa aaagaagcac
     1081 ttcttgaagt tttaaaagag aaagtaaaaa atttggcaaa tattagtcat tatttttctc
     1141 cagatctttt aagaacaatt gaagaaggtt ttgatgcatc taggatttgc gatttgattt
     1201 taaatactgt gcgtattaaa aaacaagttg cttatgagtt ttttgtttta acagatcttg
     1261 agcaaaaatt agtaaaatta atagatttaa ttgctcaaga aatagaagct aataaaattc
     1321 aaaaagaaat taaaaataaa gtacattctc gtattgataa ggtaaataaa gaatattttt
     1381 taaaagaaca attaagacaa attcaaaaag agcttggttc tgatacgcaa aaagaagatg
     1441 aggttagaga gtatcaaaag cgtctggagt taaagaagaa atttatgcac gaagacgctt
     1501 ataaagaaat caaaaaacaa attgaaaaat tcgaacgcat tcatcaagat aattccgaag
     1561 catcgatgat tcaaacttac atagaaacag cattagatgt tccttttgaa aaaatttcta
     1621 agaaaaaact tgatattaag gaagtttcaa aacagctcaa ccatgatcat tatgcattaa
     1681 ataaaccaaa agaacgcata gaagaatatt ttgcagttag ggagctttta gaaaaaagaa
     1741 aaatagcaga aaaagatggt gctaaagtta tactttgtct ttatgggcct cctggcgtgg
     1801 gtaaaacttc actggcaaat tctgtttcaa aagctttaaa aagagagctt attcgtatag
     1861 ccttaggtgg acttgaagat gttaatgagc tgcgtggtca tcgtagaact tacataggcg
     1921 ctatgcctgg acgtattact caaggactca tagaggcaaa acaaattaat cctgtaattg
     1981 tattggatga aattgataaa ttaaatcgca gttttagagg cgatccaagt gcggtgcttt
     2041 tagaaatttt agatccagag caaaattcta aatttaggga ttattattta aattttaata
     2101 ttgatttaag taaagtcatt tttatagcaa cggcaaatga tattagcaat attcctgcac
     2161 ctttaagaga tagaatggaa tttatagaac ttagctctta tactccaagt gaaaaatttc
     2221 atataatgaa aaaatattta attccagatg agcttaaaaa acatggctta aaatccaatg
     2281 aattatttat tgatgatgaa actatagagc taatcattag cgattatact cgtgaatcag
     2341 gagttagaaa tttgcgtcgc aaagtggcag agttgtgtcg taagagtgct aaaaaactac
     2401 ttttagaaaa tattaaaaaa gtcattatta atacaaaaaa tttgaatgaa tttttagata
     2461 aaaaagtttt tgaaatagaa aaaaataatg gagaaaatca agtaggtcag gtcaatggtt
     2521 tggcttggac aagcgtaggt ggagatgttt taaaagtaga ggctgtaaaa attaaaggta
     2581 aaggagaatt aacgctcaca ggaagtttgg gtgatgtaat gaaagaatca gctagaattg
     2641 cttttagcat gataaaagtt ttaatcgatg aaggaaaaat aaaaatacct aaaaaaataa
     2701 ttattgatcc taaagttaat gtttatgata gttataatat tcatatacat gtgccagatg
     2761 gagctactcc aaaagatggc ccaagtgcag gtattacgat aagcacagct attgcttcta
     2821 tttttagtga taaaaaggtt aaagcagatg ttgcaatgac gggtgaaata gatttaaaag
     2881 gaaaagtttt accaataggc ggattaaaag aaaaattaat tgcagcttat aaagcagata
     2941 taaaaacagc tttaattcca agaaaaaatt acgaaagaga tttaaaagat attcctagtg
     3001 aggttagaga caatatggaa atcattgctg ttgatacttt cagtgatgtt ttagaatata
     3061 ctttggttta actttatttt gagaataaat gtataagaaa gcaaactttt tacaagtttg
     3121 ctttaaaaga ttatagtcct tcaaaaggat tattgattac ttcttttcta tccactatat
     3181 aagggataag agctacatgt cttgcacgtt tgattgcaac ttctaccatt tcttggtatt
     3241 ttttgcttgt gcctgttaaa cggcgtggca tgattttaaa tctttcagat aaagcatgtt
     3301 ttaacattgc tgtatcttta taatcaataa attcaacttt tgcttcagtg tatttgcaat
     3361 atttgcgaga gtattttctt ttttctgcca tagtttatcc tttaaaatgg taaattagta
     3421 tcatcgctat cataagcatc gatatcaatt tcttttaatt tttcttcgtg ttgtgggttt
     3481 tggtttcttt gtggagtagg gtttgctttt gctttattaa aattttgatt ttcactcata
     3541 taaggatcat agctttgatt ttcatagttt ccactataat tgttgtttga aaagctatta
     3601 ttgccaaaac caccttgttg tggagcattg gaattgccaa gcatttccat attttcaact
     3661 tgaatgctat gtttagagcg attttgtcca ttttgatcac tccattgttc aaatctcaaa
     3721 cgtccttcta tgagtacttt tgaacctttt gtaaggtatt ggtttgcaac ttctgcggtg
     3781 cgaccataaa agcttatatc aataaagcaa gtttcttctc ttttttctcc atttgcggta
     3841 aatcttcttg ttactgctat agcggaagct ccaatagcac taccgctttg tgcataacgc
     3901 atttctatat cacgtgtaag atttccaacc aaaacaactt tgttaaacat ctttttcctt
     3961 attgaatttc aggagcatct aaaggtttaa tttctttttt agattgctta atcccgtggc
     4021 ttagtttttc ccaagctgca atttcttttt tattttcata ttttacgatt aaaaatctta
     4081 ttacttcttc agtgattctt aacacccttt caagctcagc gatcaagttt gtaggagctt
     4141 tgaaataaat cacaaaataa gttcctcttt cgtatttttt gattttatac gctaattttc
     4201 tagtacccat tggaacaaca gtttcaattt ctgcactatt tttggttagg acttctttaa
     4261 cgaattccaa cttcgcattc acttcctctt cagtaagtgt tggttttaag ataaataaaa
     4321 cctcataatg tttcatcttt tctccttatg gatattaaag cccattttta tgagcaagga
     4381 ttttgcataa agcaagacta gattatatca aaatatactt aattagtctt gaatacttaa
     4441 ggttttatct aaatttgttt tgatttcttc aagcatagca aaacgttttt tatacatgga
     4501 gcgtttttgc gaagggattt cttctaggtt tttttgagag tggtggagtt tatagtattt
     4561 gtgtttattg atttttatta attctccacc attttctagc caaatttttt gataatctac
     4621 aaaatagcct ttttcttttc ctttttgaga acggatttga tttttttcat gtacacctaa
     4681 agtagtttga agttttaaaa tttcacaaag catcttagag cattctataa gtaaagcaac
     4741 agggcgcaaa ccatgacatt ttttagttaa aattttatta atttctaaaa tattaaaatc
     4801 tttgtattta tgtccttgta tacaagaaag tagaagattg ttttctaaag taaagcaaaa
     4861 attacattgt aagattgtgt attttttaaa ttttaaagaa aaagcccaaa aaccttcttc
     4921 gcaaacatta tagttatatc ctaaaaaaag ctcaaaatct tcatcaaaag aaaaaattat
     4981 ttgctcctcg ggaagaaatt taaaacaagc gagtccctta tcaacatcat aaataagtgt
     5041 tttaacacgt tcatttgctt taaaactttt atcgcaaaat cttcttgtag cattgtaaca
     5101 agcatagggt ctttgagaga aaaagtcttt taaatgttta tttttttctt tattaagcgt
     5161 tttttctaga agtcttactt gaggaaaata taaaattttt cttgcttgaa aacgcaaata
     5221 gcgccaaaag attatacttt ttcttctatc agtaaaattt ggaatagggt aggaaaattt
     5281 tttattcacc tataatcctt gatatatcat tataagttgc aaagagcatt aaacttaaaa
     5341 gtattgccat gcctgtatag cttaaatatt caaaagtacg ctgtggaact ttgcgtctaa
     5401 aaatcatttc ataaagatta aaaagtatat gtcctccatc aagcatagga ataggtaaaa
     5461 gatttaaaat gcctaaattt atagaaatta aagcagtgat aaataaaagc aaagtaaagc
     5521 tattttgtgc agcctttgag gtaatttcag tcatggtgat aataccgcct aaattttttg
     5581 cttcaacttc accacttatg agttttacaa tacccttgat gatgagtgta gaagcttgaa
     5641 aactttcttg tgcggcatat ttaaaacttt ctaaaccttg gtgttttaca agagtgcttg
     5701 tcccatttgg actgactcca agttgaggtt tttcaacgat ttgtccaaag tcattgtatc
     5761 cttgtcctat ttttggagtt aaaataaatt ctaaattttt tccttctcta ttgattaata
     5821 ttttcaaagg atctaaactt aaatgctttg aaatttcatc aaaggtttga attcttatac
     5881 cgttaatttc taagatagta tcattttttt gaagtcctat ttcttgtgca gcagagtttg
     5941 acgctatgtt tcctatttgc ggagcaagtt tgtttagacc taaatttcct atgataatat
     6001 aaagaaaaaa agctaaaatt agattaaaaa atggtccagc aaaaagaata taaatctttt
     6061 ttaaaggact taaaatgcta tagctatctt tgtctagatt ttcaaaacca ggacgcatat
     6121 catcttgtcc tttaagttta acatatcctc caagtggtaa agtgcttaag cgatagtttg
     6181 tgcctttaaa ttcacgctct ataagacttt ttccaaatcc tatactaaaa acttcaactt
     6241 ttacacccaa agatcttgca gccaaaaaat gtcctaattc gtgaaagaaa attaaaaatg
     6301 agatgactaa aacagttgct aaaaattcaa tagaataaaa tttaattccc aaaatcaaaa
     6361 taacaattaa aaataataaa gatctcattt ttctcctttt ttttgagctt ttatataagt
     6421 atagatgtat tcaaatccag aataaagagt taaaatcaaa gctatgtaaa gtagaatttc
     6481 accgcctatc cactccatga ttaaaaatcc tatcgcagtc atttgaaaag cggttttaag
     6541 tttgcctgca aaagaagcat tgacatttaa attttcgcta atcattacaa ctctaaaacc
     6601 tgtgataaaa aattccctta ctaatataat ataaattacc cattcattag cttttcctgt
     6661 aagtaaaagc cctaaaaaag ctgctaaaac aagcatttta tcggctaatg gatctaagat
     6721 tccacccagt tttgtagttt gtttccaagt tcttgcgatg tatccatcaa aaaaatcact
     6781 taaagctgct aatgaaaaag ttaaagcagc aaaatagtta atccaacttt gatgaatatt
     6841 ttcaaaatga tgaattaata aaaaaaatag caaaggcgct aaaaccattc taaaaatcgc
     6901 caagatattg ggtaaattca taacaagcct tgtgaaatta aatgtaaaat tataatcaaa
     6961 attgtataaa atttaagcaa agacttagta aaaatacaaa aaaagaatca gtttattttt
     7021 atttaaattt tgcttaaaag caaaatttaa ataaatttta caacttcatc aaaactaaaa
     7081 cgattttttt gaggattttt ttcatcgttg caatatccta aagctaccac caaacttgat
     7141 ctttcttttt gaatattaag tgataaataa gaatcaagct tttctttatc aaaaccacct
     7201 atagtgcaac ttgctatatt taaagcatta gcactgtaaa gtatgctagc tagagctata
     7261 tgagcttgtt ctcttgcata agatattttt tgttcttgat tcagagattt taaaaaaggc
     7321 atataagcat ctaagcgttt ttgaatttct gtttcactca tatctctttt tctaagtttt
     7381 tcttcaaaat aatctaaaaa atcaagtctt gaaatgatga taattaatgc agcgcaatct
     7441 tttacatgtt tttgttggtt gcaaatttta gaaagttctt cttttctttt ctcatcttgc
     7501 attactataa atttccaagg ttccagtcct aaggaactgg ggcttaatct tgttatttct
     7561 aaaatagaat ttaaatcctc ttttttgagt ttttcatttt taaaatttct acaagaatat
     7621 cttgtgctaa aaatttcaag ttcttttttc attatttttc cttgtaaaat tcgacgactt
     7681 cattaaaatt taagcgttga gtagaatatt ttggttcgtg ggctttatat cctaaggata
     7741 aaattacggc agtttcaaaa ggataagtta aattaagaaa atcatcaacc ttagcttttt
     7801 caaagccacc tatcatgcaa gaatcaatac ctaagctcat tgcagctagt gacatttgca
     7861 tcatagcaag atagcattga agttgtgcat aatgatagag ttcattatca ttcattgcat
     7921 tggttttatg agtataaatt tctaaaattt tttgaaaatt ttcttcgcta gaacctgaga
     7981 aacgacgcac ttgtttttgt gcaaattcat ctttgctttg aagatctttt cttgctagaa
     8041 aaataatatt atgacttgca cttgctacat tttgttgatt gtaacatagg gttgagagtt
     8101 taagattgtg ttctttttgt tctaatacta caaatttcca aggctcaaat ccatgtgagc
     8161 ttggggctaa gactccactt tctaagataa aatgcaaatc cttttcattg atttttttat
     8221 cattaaaaag tttacaagct ctgcgttttg aaattagttc tttaaaattc attttattcc
     8281 ttaaaatcaa aaataataat attaattata aaatgcaaag cttaatcaaa aaatattata
     8341 gtttgatatt tttcttaaaa acaaaaccgg atttttcaaa acccattttt tggatataaa
     8401 attcatgagc ttgtgttcta aaaaaacttg aacttagttc taattcttca tatccttgat
     8461 cttttgccca aatttggatt tttttcaaaa aagcttgacc tatacctttt cctcttaaag
     8521 cttcatctac gacaaaatca caaatataaa gacaatgatt atgataaagt acattaaagg
     8581 gcatgactcc acaagctgct ttgtagcttc cctcattttc ataggcaaaa agtttataat
     8641 gttgagtttg tgtagcaagt tggattttgt ctaaaaaatc tttcaaagat aggttatttc
     8701 ttaattgttt tatcaaggga taaatttttt ccaagtcttc ttttagctta atttctttca
     8761 tttttaaatc ccttaaattt caaaaatttc aggttttaat tttaaaagta agcaaaaagt
     8821 tgccaaaaca gcttgttctt gcataaattc acgatctcca tctaaataaa gcgtttcttg
     8881 gataaaagtt ccatctctaa acattgcacc tatataaata gtgcctgatt ttatttttcc
     8941 ctcatctttt tcgccaacta ctccgctaac agctaaggca aaatcaggat tagctgtttt
     9001 aaaaatacct tttagcataa aataaacaca acgttcactg tattcgccat tattttctaa
     9061 gacgctttcg ctaattccaa gccattcgtg tttgatgcgg ttggaataac ttacaataga
     9121 accttcaaaa atttcactta cacctgaaat tttggttaag gtacttgcac aaagtccacc
     9181 tgtgcaactt tcagcaaaag aaatttttaa ttttttttct aaaagtttag agcttataaa
     9241 atgtatggga tctttaccta aaaatacctt ttgtccaaaa agatttttta cgctatttaa
     9301 aaaaccatca agttttccaa aattagcgca agtggcctta ataagcacaa gattatctaa
     9361 aagcttggtt gattttatac ttatctcata agattttgtt agggtttgca gtagcaatat
     9421 agcgctttca tcatccatgc caaaaatgca aaaatatgca aaatttaatt ttatatgccc
     9481 aagaagattg ggtaattttt cgcttggatt tattttaacg acattaattt ttgaatttga
     9541 aaaattacac acaaagctat ttttactaaa ttctgcttta tctggaacca aggtatcatc
     9601 ttttaagata agattatcat catttaaagt tgctaaaatt ttagcaacag tcgcataatg
     9661 taaagagctt gtaaataaag tgataaaatc atactgattt aagagatttt caagtaaaaa
     9721 aggtaaatct ttatcggttt tattttgtat gcgaatttcg ttgatttctt taaatttttc
     9781 ttcataagtt ctataaatat aatttttgaa tttttcgttt atagtaagct catctcctat
     9841 aagataaagc aaatgtttca taaattttcc tttttttctt ataattatag ccaaaaacaa
     9901 agtagaaatt aaagctaatt tgagtagaat ttaagattat taaaaattag gtggaaaaaa
     9961 tggactacaa agaaactcta cttttgccca gtactagttt tgctatgcgg gcgaatttag
    10021 cggaacttga accgcaaaga tttaaaaaat ggtttgagca aaattatgct tatgaaaaaa
    10081 tgaaagaaaa tcgcaaaaat gcgaaaaaaa gttttacctt acacgatggc cccccttatg
    10141 ctaacggaca tatccatata ggacatgctt taaataaaat tttaaaagaa actattatca
    10201 aaacgcatta ttttaaaggt gagagtgtgc gttttactcc agggtgggat tgtcatggtt
    10261 tgcctataga acaacaagca gaagtaaagc ttggagaaaa gaaaaaaagc ttaagtaaaa
    10321 aagaaattcg tgagttttgc agacaacatg cgagtgaatt tgtagatatc caaagagaag
    10381 aatttaaaaa tttaggcatt attgcagatt gggataagcc ttatttaact atgaaatttg
    10441 agtttgaagc agcgatttat agaactttat gcgagattgc taaaaaaggc ttactttgcg
    10501 agcgttctaa gcctgttttt tggagttggg cggcaaagtc agctttagcg gaagctgaag
    10561 tagagtatca agataaagaa gattattcta tctttgtggc ttttgattta gatgtaaaag
    10621 cttgcgaaaa attaggcgtt tcaaaagcaa gcgcagtgat atggacaact acgccttgga
    10681 ctttggtggc taatcaagct atagctttaa atcctaatga aaattatgtg atcaccaaag
    10741 agggtttgat ttttgcaagt gctttactta aaagtatggt agaaaaagga cttacaagtg
    10801 gagaaattca aaaagaacta aacgcaaaag aatttgaaaa acttgaagct atcaatcctt
    10861 taaatggaag aaaatctgtt ttaattatgg gcgagcatgt attgatggat ggtggaagtg
    10921 gacttgtaca tactgcacca ggacatggcg aagatgatta ttatgcttgt ttgaaatatg
    10981 gcattgaggt tttaatgcct gttgatgata gtggatgtta tgatgaaact ttaagagcta
    11041 aagggctttt gccttctcat ttgcttgaag agtttatagg tcttcatatt tttaaggcca
    11101 atgaaaaaat tttagaactt ttaggcgaaa aactgttaca ttcttctaaa tttatacact
    11161 cttatccatt ttgttggaga acgcataagc ctgtgattta tagagctact aaacaatggt
    11221 ttattttaat ggatgaacca aaacttcaag gaaaaacttt aagagagtgt gcaaaagaac
    11281 aacttttaaa aacaaccttt tatccgcaaa gtggggtaaa aagaataggt tctatggtgg
    11341 aaaatcgccc agattggtgt atttcaagac aaagagactg gggaacgcct atagcctttt
    11401 ttagagataa aaacactaaa gaagtgattt ttgatgatga gttttttgac tttgtagcag
    11461 ctatctttga aaaacatggc gctgatgcgt ggtgggagtt tgaaatcaaa gatttaattc
    11521 ctacaaattc aaaatacaac gctgaaaatt tagaaaaagt atatgatatt ttagatgttt
    11581 ggtttgatag tggaagtact tttaatgcgg ttttaaatag cggactttat gacacaggag
    11641 aaaaaagagc aagtatgtat ttagaaggaa gcgatcaaca tcggggttgg tttcaaagct
    11701 ctttgcttgt aggtacagcg atcaatgaaa gtgcacctta tgaaagcatt ttaactcatg
    11761 gttttaccac cgatgaaaaa gggcaaaaaa tgtctaaatc taaaggcaat gtgattgctc
    11821 ctgaatatgt agcaaaaacc tatggagttg aaattttaag actttggata cttttaagtg
    11881 attattcaag tgatttaaaa atttcagaca atatcttaaa acaagtaggc gaacaatacc
    11941 gcaaaataag aaacactata agatttttac ttgccaatac caatgattta aaagatttaa
    12001 aagttaaaga atttagtttt attgataaat ggatattaag ccgtgcaact aaagttttta
    12061 aagcaagcaa agaggcattt tttgcttatg aatttgctaa aggttttagt ttgcttttaa
    12121 atttcttaag tgcggattta agtgggattt atcttgatat cagtaaagat agactttatt
    12181 gtgatagcga aaatgcccaa agaagaaaat ctgctcaagt ggctatggct ttgatagcaa
    12241 aagagctttt aaatttactt gctccaaatt taagctatag tgtagatgag gctttagaac
    12301 atgctaatgt tttaatcaaa ggtgatgcaa aagatgtatt tgatctaagt ttaactcagg
    12361 attttgatta tgattttggt atagatgata catttttaat gagtgctaga gagaaatttt
    12421 ttgaacagat tgatatactt aaaaaagata aaatcattaa atctactttg gaattaaatt
    12481 taaacatcag ttttaataaa ttcccaaatg aggaattagc cgattggttt atggtaagtc
    12541 aaatcagcaa tgaaaatgaa gaaattttgg ctgaatttga agtagagaat gagaaattta
    12601 aaatcaccaa agcttcactt tgtaaatgcc caagatgttg gaaacttcaa agtaaagatg
    12661 aagaaacacc ttgtttaaga tgtgaagaag ttttaaaagg gattcaatgc tagaaaatcc
    12721 tattccaaat agcattatca tcacaactat agcggtggtt ttggctttta gtgctttagc
    12781 agtatttttg atcaaaaaaa caaaggaaaa taaatgataa ctttaaaaga agctttaaaa
    12841 tactccaaag aagaacttga aaatttaaaa aaagaactca atgaaaaagc aaaaaaagaa
    12901 aaaaaaatag gtgcttatat cgaacaattt ttagataaag acttaagtgt ttcaggtgaa
    12961 ggtgtgcctg tagctataaa agataatatc agcgtaaagg gctgggagct tactagtgcg
    13021 agtaagattt tacaaggtta tatcgctcct tatgatgcaa gtgtgattgt taatttaaaa
    13081 gctaatggtt tttctccttt tgggcgttgc aatatggatg aatttgctat gggaagttca
    13141 acagcgagtt cttattatgg caaaacttta aatcctttaa attttgagcg tgtgccaggt
    13201 ggttcaagtg gtggaagtgc tgctgcggta gcgggtggct tggctttggc aagtttgggt
    13261 tctgatacag gaggatctgt acgtcagcct gcagcttttt gtggttgcgt aggatttaaa
    13321 ccgagttatg gaagagtgag tcgctatggc ttagcttctt attcttcaag tttggatcaa
    13381 attggggttt taacgcaaaa tgtagaagat gcggcaattt tatatgatgc gatcgcagga
    13441 tatgataaaa tggatagcac gagtgcaaat atcgagttta tcaaaaccgc tccaaattta
    13501 aatgcaaata aaaaattaaa aattgcagtg attgaaaatt atgtcaatga tgcagatagt
    13561 gaagtaaaaa acgcactttt aaaaaccata gatatgttaa aagctaatgg acatgagatt
    13621 gtatataaaa atttgcttga ttctaagttt gatatcgcag cgtattatat catcgcaaca
    13681 gctgaagcaa gtgcaaattt aagtcgttat gatggggtgc gttatggcaa gcgttctgaa
    13741 aatatccaaa atttaaaaga aatgtatgta aatacacgca gcgaaggttt tggagaagaa
    13801 gtaaaaagaa gaattttgtt aggaactttt gttttaagca gtggatatta tgatgcgtat
    13861 tatattaaag cacaaaaagc tagagctttt attaaggtaa aatatgaaga aattttgcaa
    13921 gattgtgatc ttatttttat gcctgtaacg cctacaacgg cttttaaatt tgatactcaa
    13981 aaaagcccta tgcaaactta tttagaagat gtttatacta tctctgtaaa tttagcagga
    14041 cttggaggca ttagtgtgcc tgttgcaaaa gataaagaag ggcttaatat atcagcacaa
    14101 ctgatttgca aagcttatga tgaacaaacc ttgttagatg gggctttaag tttagaacaa
    14161 atgattaaac attaaggatg aaagatgaaa attgtaaaaa gagctttaac ttttgaagat
    14221 gtattattgc gtcctgggta ttctgaagtt ttacctaagg aagtaaaaat tcacactaaa
    14281 ttaacaaaaa atatcacttt aaatatgcct ttaatctctg cggctatgga tacagttact
    14341 gaacacaggg ctgctattat gatggcaaga cttggagggc ttggagtgat tcataaaaac
    14401 atggatatag cctcacaggt tagagaagta aaaagagtga aaaaaagcga aagcggggtg
    14461 attatcgatc ctatttttgt aagtcctaag gcaagtgttg cggaagcttt agaaattatg
    14521 gcagagtata gaatttcagg tgttcctgta gtagatgaag ataagaaact aataggcata
    14581 ctcaccaatc gtgatttaag atttgagagt gatttttcaa atttggttga aaatgttatg
    14641 actaaaatgc ctttaattac tgctccaaag ggttgtactt tagatgatgc ggaaaaaatt
    14701 ttcagcacca acaaagtaga aaaacttcct atagttgatg aacaaggacg cttggaagga
    14761 cttatcacta taaaagatct taaaaaacgc aaagaatatc ctgatgccaa taaagataat
    14821 tttggaagat tacgcgtggg tgcggctata ggagtagggc aaatggatcg tgtgaatgct
    14881 ttagttgaag caggcgttga tgttgttgtg cttgattctg cgcatgggca ttctaagggt
    14941 attattgata cagtaaaagc aattaaggct aaatatccaa atttagatct tatcgcagga
    15001 aatatcgcca ctgcagctgc agcaaaagca ctttgtgaag caggagtaga tgcggttaaa
    15061 gtaggtattg ggccaggaag tatttgtact acacgtattg tttcaggtgt gggcgtgcct
    15121 caaatttcag ccattgatga gtgcgtggaa gaagcaaata aatttggcgt tcctgtgata
    15181 gctgatggcg ggattaaata ttcaggtgat atcgcaaaag ctttagctgt aggtgcgagt
    15241 tctgttatga taggatcgct tttagctgga acggatgaga gtccaggaga gctttttact
    15301 tatcaaggaa gacaatataa gtcttatcgt ggtatgggct cacttggggc tatgcaaaag
    15361 ggaagttcgg atagatattt tcagcaaggt actgctcaag ataaactcgt tcctgaaggt
    15421 atagaagggc gtgttcctta tgtgggaagt ataagaagcg tggtgcatca acttttagga
    15481 ggtttgcgtt cttctatggg ttatgttggg gctaaagata tagaagattt tcaaaaaaga
    15541 gccgaatttg ttgaaattac cactgcaggg cttaaagaaa gtcacgtgca tgatgttact
    15601 atcactcatg aagcaccaaa ctacaaggtt aatcatcaat gagttttgaa gaaaatttaa
    15661 aacacgctaa tgaatctttg gaaaaattaa ataatcaaga gcttgcctta gatgaaagtg
    15721 taaaaattta taaagaaggt ttagagagta tcaaaaaagc aagacttgag cttgaaaaag
    15781 caaaattaga agtggagcaa atcgatgagt aaaatagcag ctttacagtt tccaacttta
    15841 gctttaagtg aatcaaggct tgattattat cttaaagctt caaaagacaa tggagtaaat
    15901 ttagtagttt tgggagaata tgtgatcaac agttttttta cagaactttt gcatatgcca
    15961 aaaaatatga taaaagaaca aagcgaagct aaaaaagaaa gcttgattaa acttgctaaa
    16021 aaatacgaat tagaaattat cgctccttat gtaagcgttg aagctaaaag ttataaaaaa
    16081 ctttgcttaa aagttactcc aaatggtgtg aaaagttatg aacagcaaat tttaatgcct
    16141 tatgaacatt ggaatgaaga aaaatttttc agcaacaaaa ctccatcaga attaaaaatt
    16201 tttactttta attatgaaaa attaaaatgt gctttgcttt ttggttttga gacacatttt
    16261 gatatttttt ggcaacagat tatggcgaaa aaaattgatt tggttatcgt tcctagtgct
    16321 tgtacctttg aaagcaaaca aagatgggaa gaacttttaa aaacaagagc ttttttaaat
    16381 tctacaagca ttttaagagt aaatcgcata ggcaaaacaa aagatgagtg gaatttttac
    16441 ggcgatactt tgtttattaa tgcttttggt gagatagaaa gtaaattggg ttctgaagaa
    16501 gaaatgctta ttatagagcc taaaaaaagt gatgaagcaa gaaaactttg gggttttgat
    16561 aagataataa aagaatttaa aaattaaatt tatacttata gatttataag tttataaaag
    16621 ttatctagag ctgatagaag ctaaggttta tattttcttt ttagtaaaaa agtgctaaaa
    16681 tttagccttt aaagtataaa ggtttaaatg atgcaaaata tccattttat cggcataggc
    16741 ggtataggaa tttccgcttt agcaagattt ttaaaagaaa aaggttttaa aattagcgga
    16801 agtgatctta aagagagtaa aatcactaaa gaactagaaa aagaaggggt taaggtcagt
    16861 atccctcatc ataaagacaa tattttaaac aaagatttag ttatttattc tgctgctatc
    16921 aaagaagaaa atcctgaatt taaacacgct aaagaattag gcattaaatg cctttcacgc
    16981 aaggaggcct tacctcttat cttagaagat aagcgcgttt ttgcagttgc aggagcacat
    17041 ggaaaaagca caacttcaag tattttggct tctttgcttg gtgatgcttc tgtgatcatc
    17101 ggagcgattt taaaagaatt tggttcaaat atgatttata aagaaagcca aaaccttgtt
    17161 tttgaagctg atgagagcga tagttctttt ttaaattcaa atccttattt ggctatagtt
    17221 actaatgcag aagcagagca tttagatcat tatggcaatg aagtttcaaa actccatcat
    17281 gcttatgcgg agtttttaga tacggctaaa attcgcgtga ttaatgctga agatgagttt
    17341 ttgaaaaatt ataaaaatga gtcaaccaag ctttatccga gcaaagatat caaaaactgc
    17401 accatgcgta tagaaaattt caaacctttt acaagctttg agttgaaaaa tttaggtgaa
    17461 tttaaggttt ttggcatggg atatcattta gcccttgatg cgtctttggc gattttggcg
    17521 gctttaaatt tcttagatat agaaacgata agaactaggc ttaaaaatta tcaaggtatt
    17581 aaaaagcgtt ttgatatttt acatgctgat gaaaatttgg ttttaatcga tgattatggt
    17641 catcatccca ccgaaataaa agcgacttta agtgcagcac aacaatacgc aaaattaggc
    17701 ggatataaga aaatcacagc tatctttgaa ccccaccgct acacgcgttt ggctgcaaat
    17761 ttaaaggaat ttgcaaaggc ttttgaaggt gtagacgagc ttataatttt acctgtttat
    17821 actgcaggag aagagcctat agggcttgat ttagaagcgg tttttcctaa ggctttattt
    17881 gtagaagata tcaaaagaga gggtaaattt ttggtagctt ctaaggggca agtttttgaa
    17941 gaagggctta ttataggttt tggtgcagga gatatcagta ataaattaag gcaaaaaaat
    18001 gagtaggttt tttttatatt ttttaattat tttaatttta gccttaatca cttttgcttt
    18061 gcgtgaaaaa ttaggcaaaa aaactaaacc tttttttggt attttacttg tgatttttat
    18121 tgttttagcg gtattttttg aatttgaaaa cacgcaaaaa agtcatttaa gaacagatat
    18181 tatcgtagct tttaatcaaa ataaaaatat tttatgtaaa gatatcaatg tttctaaggc
    18241 gtattttaat tatgaatttg gtacaggaag ttttatttca aaggataata atcaaagttt
    18301 taattcttta atcatagata ttaaagattg taggttaaat gatgaatgat acaaaagaag
    18361 aattgatctc aaagcttgat ttaaacagct atttagaaga gtttaaagcc ctttttgcaa
    18421 gagataagga gatttttttg caaggagatt ctaatcttca ttttaaacgt atacatgagc
    18481 tttgcgaggt ggaatttcct actataccag agcttagcaa tcttgataaa gccttggttc
    18541 atttaagtaa gcaaggaatt ttgcatttag atgaaatttt tgaatttgta aaaatttttc
    18601 gttattttga aaagttaaaa aaaataaaac taggaacaaa tttagactct tggctacaaa
    18661 agatagaatt tgttagcggg gctttggagc tttgtttgaa tttcgatgaa aaaggggagt
    18721 taaaagaaag tttagatgaa agacttgtaa atcttaatgc cgctctaaga ttaaaaaatg
    18781 aaagcataat agctgagttt aagaaatttt gctatacaaa agctttaatg ccttatctta
    18841 tcgatacaca aatccatctt ataaacaatc ttgaagcctt gcttgtaaga ggcgggttta
    18901 atcacgctat taaagcaaaa atcataggca gaagtaatgg cggtggcttt tatatcgtgc
    18961 ctttaagtgt tgaaaatttg caaaatgata tagaaaaaat caaaaatcaa aaagaagaaa
    19021 tttattatga atacgctaaa aatttctcag cttttttagt aaaaaatcta ccttttttaa
    19081 aatttatcaa tacagccttt gatctttttg atcattatag tgctagggtt ttgcttgcta
    19141 aaaaaaggga ttttgaattt gttttgtgtg atcaaagtac ggatttagtg cttaaaaatt
    19201 ttgctcatcc tgccttaaaa aatccaaaaa gcgtgagttt ggaatttaaa aaacaagttt
    19261 taatcatcac aggggtaaat gcaggcggaa aatccatgct tttaaaatcc atgctaagcg
    19321 cagcattttt agctaaacat cttttgccta tgcatataaa agcaagtgaa agtaaaatcg
    19381 gtacttttaa agaatttgat gccatcatag aagatccgca aaatgttaaa aacgacattt
    19441 caacttttgc aggaagaatg ttgcattttt ctagactttt ttctaggaaa aatttgcttt
    19501 taggtatcga tgaaatagag cttggaacag attttgaaga agcggcttgt ttgtatagtg
    19561 tgttaatttc aaaactcata gctaataatc ttaaaatcat cattactaca caccacaaac
    19621 gccttgccat gcttttagca aagaatgagc aagttgaact catcgctgcc ttatatgatg
    19681 aagagctttc acgcccaaaa tacgagtttt taaaaggcac cataggaaaa tcttatgcct
    19741 ttgaaaccgc tttgcgttat cagattccgc cgaatttagt tagcgaggct aaaaagcttt
    19801 atggcgagga taaagaaaat ttagaagagc ttgtgggtaa aaatatcaat cttgaattag
    19861 aactaaaagc taagcttgaa aatgtcgaga aaaaagagca aaaagtcgat gaaattttac
    19921 tttccttaaa agagcaaaaa gaaaaaaatg aacaagaatt tcgtacgagt ttgagaaatt
    19981 tagaatttaa atttcacaaa gccatagaag aagctaaaaa aaccatacag cttaaagata
    20041 taaaagacaa gcaaagaagt cttaataaag ccaatgaact taaaaaagaa atcatcttgc
    20101 caagtatgga gcaaaacgaa gaattgcgtg tgggggattt tgtaaaatat gaaaaaatta
    20161 agggtaaaat cataagcatt tctaaaaacg atgctatggt tgaaagtgat gggatcaaac
    20221 ttcgtgtgcc tttaaaactg cttaaaaaaa gcactcctac atctaaaata agtccaaaaa
    20281 caagcattag tgtggcaaaa ccgactaatc ttagtgttag cttggatttg cacgggctta
    20341 ggagtgatga agctatttca aggcttgata aatttatttc agatgctttg cttgcaggct
    20401 ttgatgaagt tttagtttac catggtatag gagcaggaaa gcttgccttt gctgtaagag
    20461 agtttttgaa aactcataaa agtgtcaagg gctttaatga cgcaccgatc aatcaaggtg
    20521 gctttggtgc taaggtggta agattataag gaaataaatg attacaaaag ataatttaaa
    20581 acaagtttta gaaaacttag gctttaaaaa taaaaatgaa aattatgtaa aaacaatcaa
    20641 taattacact cttttaatag attataaaaa ccaaagtatt aattatccaa aagaaataaa
    20701 aattcacgat aaaactactt ctaatttttc acaccctgaa aattttgtag tttttgaatg
    20761 tgtgcataga cttttagaaa aaggttataa ggctgaacat ttagagttag agccaaaatg
    20821 gaatcttggc agggataaaa aaggtggtaa ggctgatatt ttagtaaagg ataatgaaaa
    20881 caatccttat ttgattatag aatgtaaaac cacagattct aaaaatagtg aatttataaa
    20941 agaatggaat agaatgcaag aagatggcgg acagcttttt tcttattttc agcaagaaaa
    21001 aggtgtaaaa tatctttgtc tttatacaag tgattttagc gataagttag aatataaaaa
    21061 ttacatcata caagcttacg ataacgaaga atatctaaaa gaaaaggaat tgcaaaattc
    21121 ttataaaaaa tctaataaca atatagaact ttttaaaact tggaaagaaa gttatgaact
    21181 gcaatatttt aaacaaggta tttttgaagc aaatgtcaat gcctataaaa ttttagaaat
    21241 tactccaact tttgataatc ttaaagaact taaagaagaa ggcaaatatc acgaatttgc
    21301 aaaaatttta cgcaagcata atatatcagg caaggaaaat gcctttgata aacttgtaaa
    21361 tatttttctt tgcaaaattt atgatgaaac ttttaataaa aacaatctca aatttggata
    21421 ttttggtgta atggcagata cttatgcaaa tatgcaagat agattaatgt ggctttataa
    21481 agaagctatg aaagaattct taggagagaa aattaccttt gtatctaatg aagatataga
    21541 aaaagacttt aagcaattaa agataaaaac tttaaaagaa gtaatgcaaa attacatcaa
    21601 agaattaaaa ttttattcaa ataatgattt tgcattttta gaagtgcata ataaagaatt
    21661 attcttaaaa aatgcacttg tattaaaaga aatagtagag ctttttgcaa attacaagct
    21721 tactcaaaac tctacaaatc aatttttagg caatcttttt gaactttttt tgcaaaaagg
    21781 tatgaagcaa gacgaaggtc agttttttac ccctattcaa atttgtgaat ttattatgta
    21841 ttctttaccg cttcacgaaa tgttaagcaa aaactctaaa gctttaaggg tggttgatta
    21901 tgcttgtggt gctggacatt ttttaaacac ctatgccaat gagcttaagc gttatctaac
    21961 agaagatgag cttaaagagc attataaaaa tatttatggt attgaaaaag agtatcgctt
    22021 aagtaaggtt tctaaggtat caagtgcaat gtatgggcaa aatgaaatca atattttata
    22081 cgctgatgca cttgcttctt ttgaattagc aaatacaaat aatttagaag gagaaaaagc
    22141 aaaaccacaa atagaatcaa atagttttga tttgcttata gcaaatccgc cttattctgt
    22201 aaaaggattt ttagaaactt taagtgataa atctaaaaat acttataaac ttttcaacga
    22261 tgatataaac atagaaacaa ataattctat cgaatgcttt ttttgtgagc gagcaaatca
    22321 aattttaaat gataatgcta aagctgctat tatcttacca agttctattt taaataaaga
    22381 ttctatttat aaaaatacaa gagaaatatt atttcaaaat tttgatttta ttgccattgt
    22441 agagctaggt aatcaaacat ttggagcaac agggacaaat acgattattt tatttttacg
    22501 caaaaaagaa acttttaaac aagaaaatca tcttatttct caagattata gtttgattaa
    22561 agaacgcata gaagctgaaa atttaaaaga caatgaaagc ttttatcaaa attatctaag
    22621 tgcgtattgt gattttagaa aatttgataa agagctttat agcaattttt taaatggaaa
    22681 cttagattct aaactcacag agctagaagc ctttaaagat tatcgcaatg catttaggca
    22741 aacaagtgat tataaaaaac ttaaagaatc taaaatttat aaagaaagta aagataagca
    22801 agatttagaa gataaagcct ttttagctta tgctcaggca atagaaaagg ataaattgct
    22861 ttattttagt ctaagtctta atcaagaagt tttaatcata aaatccccaa gtgatataaa
    22921 agaacaaaag aaatttttag gttatgagtg gagtaataga aaaggtgatg aaggtttaaa
    22981 agaattgcac gagccttatt tgagcccact ttttgaaaga ggcaatccac aaaatgagac
    23041 caagcttaat actttaatct acaaatcttt tttaaatacg cttgatgtta tcccgcaaga
    23101 attgcagatt tatgctacaa aagcaaggct tattgatatg atggattttg aaaaagtgga
    23161 atttaataaa gctataagtt taaatccaaa aactcaaaga gaagaaataa agtctcaata
    23221 cccattggtt aaattgaaaa tttgtggaga ttttttcatg ggaggaacac catcaagaaa
    23281 aaatataaat tattggaatg gggatattaa gtggctaaca attagcgatt actctaatcg
    23341 tcaagttatt atggatacta aagaaaaaat tacaagagag ggttttaaga attctaatgc
    23401 aaaaatgata caaaaaggtg ctgttgttgt ttcaatttat gcaactattg gtagagttgg
    23461 aatattaggc gaagatatga caacaaatca agctatagta gctattattc caaatgaaga
    23521 atttataaat aaatatctta tgtatgctat tgattatttt aaatttcaat tatataacga
    23581 agttattaca acttcgcaac aaaatataaa tttaggaatc ttgcaaaata tggttattcc
    23641 aaaaccaccg cttgaaattc aaaaacaaat cgtagcagag tgtgaaaaga tagaagagca
    23701 gtataatact ttaagtttga gtataaaaga gtatcaaaac ctaatcaaag caatgcttca
    23761 aaaatgtggt attatagagg acaatcaaga atatgaacta aattctattt tagataaaat
    23821 taataattta tgtaaaataa atttggatag tgaattttta tcatcattta ataaaacaat
    23881 taaagaatat gctttatcaa atccaatttt taaactaagt attggaaaaa gagttttaaa
    23941 taatgagctg cttgaaaatg gacaaattcc tgtttatagt gcaaatgtgt tggaagtatt
    24001 tggatttgtt aataaagaaa ttttgcaaga ttatgataat gattctgttt tgtggggtat
    24061 agatggagat tggatggtgg gatttatacc aaaaaataaa aagttttatc caactgatca
    24121 ttgtggggta ttaagggttg atgatacaaa aataaatgct aaatacataa gttttatttt
    24181 aaatgaagct ggtaaaaaac aaggattttc aagaaaactt agagcttcaa tagatagaat
    24241 aaaagcatta agagttaaac ttccttcttt agaatttcaa gatcaaatag cagatataac
    24301 tgacaagatt gagaaaaaaa tcaatgaata taaaatagaa cttgatagat tagaaaaaga
    24361 aaaagaaaaa atcttgcaaa aatatttatt ttcttaaagc atttttcgct aaactttgta
    24421 aattttataa ggtttagcga tgaaaaacat tatgatatta agcggagcgg gtttgtctgc
    24481 tccaagtggg cttaaaactt ttagagataa tgatggactt tgggaagaat acgatgtgat
    24541 ggaggtttgc tctgcaacag gttttagaaa aaatcctaaa aaagtacttg atttttacga
    24601 tgcaagaagg gcacaacttc aaaatgtaaa gccaaatcac gcccatgaaa aaatcgcaca
    24661 gttaaaagaa aaatggggta aaaacctttt tgtcatcacg caaaatgtag atgatttgct
    24721 agagcgtgca gggtgtaaag atgtagtaca tttgcatggc tttttgcccg aacttcgttg
    24781 cctaaaatgt gaaggaattt ttaatatagg ctatgaaaaa ttcacagata aacaatgccc
    24841 aaaatgcaaa agtaaggatt taagacacaa tatagtcatg tttgaagagc aagctcctgc
    24901 ttatgctacg ctttattctt tacttcatca aacttcatta tttattagca taggcacaag
    24961 tggggcggtt ttgcctgtgg ggcagtatgc ttcaatgtgt gaaaaaagta ttttaaatat
    25021 ttatgaaaaa gatgtgaatt tagagcgata ttttgataaa atctatatag aagatattat
    25081 aagcgctatt gataaaatcg cacttgatat agaaaatttt atgaaagatg gtaatgtttg
    25141 attctttttt aagtggagtt tttttgggct ttggagtgag tgtgcctttt ggacctgtaa
    25201 atattttgat tttaacttat gcactaaaag cttttaaaaa ttccatagct gtaggacttg
    25261 gagcatttag tatagatatg ctttatcttt ttttgcttca atttgggctt ttaaatttct
    25321 tagacaatgt catttttatg cgttttttgg cgatttttgg tttttgtttt ttaacttata
    25381 tggcgtattt gatgctaaga aaaaagaaag aaagcttaaa tttagagcat aaagaattta
    25441 aagaaagtct tttgaaaagt tatattaaag gagctttttt aaatggttca aatccttttg
    25501 tgataggatt ttggcttagt gctgcaagtg tggttttaag cagcgatcat gcttatttga
    25561 tgactttagg acttgttgtg gctatacttt tttgggtaag tgctttagcc tttgtggtgg
    25621 caagatatag ttatgttttt agtgcaaaag ttgtttttat aatcaatata atttcagcta
    25681 taattataga gtattttgct cttaatttat tatataaaac tttcttagga taaaaaatga
    25741 atgcaaaaga atttttaatc gaacttttaa aatttaaatc tgttacgcca aatgatgatg
    25801 gagctttaaa tttcatcgct atggaactga gtgattttga agcttttttc atagaaaaag
    25861 aaggcattaa aaacctttta ctcactaaaa aatttaaaga tgaaggcgag catttagctt
    25921 ttggtgggca tgtagatgtg gtgcctgcag gcgagggttg gagtagcgat gctttcgtgc
    25981 ctatggaaaa agaaggcttt atctatgcaa ggggtgctca agatatgaaa agcggagtag
    26041 cagcctttgt agatgcggca aagaatgtag attttaaagg agcaagactg agtcttattt
    26101 taacaagtga tgaagaaggt gaagctatat atggaactaa ggctgtttta gaatggatgc
    26161 aagaaagaga tatgttacct gattatgctg tggttgccga gccaacctgt gttaaaaaaa
    26221 tcggcgatag tattaaaata gggcgtcgtg gttctatcaa tggaaaactt ttaatccgtg
    26281 gaaaacaagg gcatgttgct tatcctgaaa aatgtatcaa tcctgtgcat gattttgcac
    26341 cagttttaaa gcttttagcg ggttttgatc tcgatccagg tagtgctgaa tttagtcctt
    26401 caaaaattgt tattaccgat attcgcggag gtatgggggt gtgtaatgtt acgccaaatg
    26461 atttaaaact tatgtttaat gttcgcaatt cccctgatac aagcttagaa gatgtaaaaa
    26521 gttatgtaga aaaaatttgt catggtttaa actatgagtt agagctaaaa caatcaagcg
    26581 aagctttttt gacaaatatc gataataaaa tcgttcaaaa aatgaatgaa agcgttcaaa
    26641 aaatcactca tgaagtgcca gagcttaata ctaaaggcgg cacaagtgat gcaaggtatt
    26701 ttgcaaaata tggtgtaaaa gtagtggaat ttggggtttg taatgataga attcacgcta
    26761 ttgatgaaag agtaagcata gaagaatttg aaaaactttg ccttgttttt aaagacttga
    26821 tagaaaattt ttaaaggttt aggatgattg aggaaatttt aaaagatagt gattacaagc
    26881 tagatctatt tagtaaaaaa gctattgctg aattggaaac taaaattata gctaaaacaa
    26941 acaaaaataa ccaaattata tactatacta attgccttat ccgcgataaa gaaattaaac
    27001 ttacgccaga agaaattgtg cgtcagcttt atatcgataa gcttttaaat gaatataact
    27061 atcctaaaga tatgataaaa attgaatttg gtgtgcattt tggacgcgaa gtaaaaaggg
    27121 ctgatattgt gataattgat aaaatccaaa tcacagtccc atacatcatt atagaagtaa
    27181 aaaagccaaa gttgaaagat agcaaagaac aattaaaaag ttattgtaat gctacaggtg
    27241 caactatggc tgtgtggtgt aatggtaaag aaattagcta ttatcataga aaagatccaa
    27301 attattttga atctattcca aatattcctg catcaaacca gacattaccg gatctgttga
    27361 aagtaaaaat tacctttgat gatttgatta aagaagatat tttaaaaagt caaaagcgaa
    27421 gtttaaagaa tttagttaca gaaatggaag atgaggtgtt ggcaaatgct ggagttgatg
    27481 tatttgaaga atgttttaag cttatattta taaaactttt tgatgagcta gagggtgcaa
    27541 gagatagaac aaagagctta gagtttagaa attatggaga gtctgattct gaacttaagc
    27601 aaaaaataga aaaactcttt gataaagcaa agaaaaaatg ggaaggtgta tttaataatg
    27661 atgagaaaat taaactttct ccttcgcacc taagtgtatg tgtatcatca ttgcaaaatg
    27721 taaagttatt taactcaaat ttagaagtga ttgatgatgc ttttgaatat ctagtgaata
    27781 aatcctcaaa aggtgaaaaa gggcaatatt ttactccgcg ttatgtaata gatatgtgtg
    27841 taaaaatgct aaatcccaaa aaagatgaaa gtatgataga tactgcaagt ggaagttgtg
    27901 gatttccgat acatacttgt ttttatgtgt ggcgttcaat ttataaagaa agaggcatag
    27961 aagcaagtca tctctttaca gcccaagaaa agatttctga gtgtcaagat tatgtaaaag
    28021 aaaaagtgtt tggtatagat tttgatgaaa agagtgtgcg cgtatcaaaa atgcttaatc
    28081 taattgcagg tgatgggcat acaaatgttt tgtatttaaa ttccattgac tttgatagat
    28141 gggatgagtg ggtaaaagat gatgaagatt ggcaagatgt gtattttgaa ggttttaaac
    28201 gcttaaaaaa tttaagagta actaaaaatc aaaataggga ttttaatttt gatgttttaa
    28261 tggcaaatcc gccttttgca ggagatataa aagagagtag aattttagct agatatgagc
    28321 taggcaaaaa agaaaatggc aaacctcaaa gtaaggtagg aagagatatt ttatttatcg
    28381 aacgaaattt agatatgtta aagcctggtg gtagaatggc tattgtattg ccacaagggc
    28441 gttttaataa ttcaagcgat aaatatataa gagaatttat cgcacaaaaa gctagaatct
    28501 tagcggttgt aggacttcat ggaaatgtct ttaaaccaca cacggggaca aaaacaagtg
    28561 ttttattttt acaaaaatgg gatgataaat tatgtccaaa gtgtgaggac tataatatct
    28621 tctttgctac tatgaatgag cctagtaaag ataattcagg cgaaaagatt tattacccac
    28681 ttttagattc tcatgatcat ttagtagtaa aacatgattt atttcatccg catttagaag
    28741 gagatgagcc tataaaacaa aaagatgaaa gccaagaaga gtttgacaaa agaatacaag
    28801 aatatagatt aaatgtagaa aaatataaag acttgcaaaa agatggcata gctgaagctt
    28861 ttattgaatt tgcaaaagca gaaaatttga gtttttggaa agaataagtg aatggataat
    28921 atgaaagaat ttaaaatttt ttgcgatgaa agcaatcatt tattttacaa agataatcca
    28981 actttgtgtt c
//
LOCUS       DARGEX010000006        28370 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.006, whole genome shotgun sequence.
ACCESSION   DARGEX010000006 DARGEX010000000
VERSION     DARGEX010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.006"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(139..588)
                     /locus_tag="SF010_000244"
     CDS             complement(139..588)
                     /locus_tag="SF010_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229212.1"
                     /translation="MVIFCAALALLLFLGVIAYLIISDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(604..3849)
                     /gene="ccsA"
                     /locus_tag="SF010_000245"
     CDS             complement(604..3849)
                     /gene="ccsA"
                     /locus_tag="SF010_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG8229213.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAVANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWFAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(3867..4562)
                     /locus_tag="SF010_000246"
     CDS             complement(3867..4562)
                     /locus_tag="SF010_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229214.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4549..5319)
                     /locus_tag="SF010_000247"
     CDS             complement(4549..5319)
                     /locus_tag="SF010_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229215.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5316..6368)
                     /locus_tag="SF010_000248"
     CDS             complement(5316..6368)
                     /locus_tag="SF010_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8229216.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYCEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6368..7264)
                     /locus_tag="SF010_000249"
     CDS             complement(6368..7264)
                     /locus_tag="SF010_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8229217.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYSSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7283..8392)
                     /locus_tag="SF010_000250"
     CDS             complement(7283..8392)
                     /locus_tag="SF010_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8229218.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8414..9529)
                     /locus_tag="SF010_000251"
     CDS             complement(8414..9529)
                     /locus_tag="SF010_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8229219.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9560..9994)
                     /locus_tag="SF010_000252"
     CDS             complement(9560..9994)
                     /locus_tag="SF010_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8229220.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(10003..10194)
                     /locus_tag="SF010_000253"
     CDS             complement(10003..10194)
                     /locus_tag="SF010_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG8229221.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10247..10753)
                     /locus_tag="SF010_000254"
     CDS             complement(10247..10753)
                     /locus_tag="SF010_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG8229222.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10762..11793)
                     /locus_tag="SF010_000255"
     CDS             complement(10762..11793)
                     /locus_tag="SF010_000255"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG8229223.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11793..13094)
                     /gene="flgR"
                     /locus_tag="SF010_000256"
     CDS             complement(11793..13094)
                     /gene="flgR"
                     /locus_tag="SF010_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG8229224.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYNFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(13151..13600)
                     /gene="flgQ"
                     /locus_tag="SF010_000257"
     CDS             complement(13151..13600)
                     /gene="flgQ"
                     /locus_tag="SF010_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG8229225.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(13576..14091)
                     /gene="flgP"
                     /locus_tag="SF010_000258"
     CDS             complement(13576..14091)
                     /gene="flgP"
                     /locus_tag="SF010_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG8229226.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14160..16748)
                     /gene="gyrA"
                     /locus_tag="SF010_000259"
     CDS             complement(14160..16748)
                     /gene="gyrA"
                     /locus_tag="SF010_000259"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG8229227.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(16789..17364)
                     /locus_tag="SF010_000260"
     CDS             complement(16789..17364)
                     /locus_tag="SF010_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8229228.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(17361..18005)
                     /locus_tag="SF010_000261"
     CDS             complement(17361..18005)
                     /locus_tag="SF010_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229229.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(18082..19878)
                     /gene="lepA"
                     /locus_tag="SF010_000262"
     CDS             complement(18082..19878)
                     /gene="lepA"
                     /locus_tag="SF010_000262"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG8229230.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            20005..21279
                     /gene="cmeD"
                     /locus_tag="SF010_000263"
     CDS             20005..21279
                     /gene="cmeD"
                     /locus_tag="SF010_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG8229231.1"
                     /translation="MFKKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLSSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRVLESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            21276..22016
                     /gene="cmeE"
                     /locus_tag="SF010_000264"
     CDS             21276..22016
                     /gene="cmeE"
                     /locus_tag="SF010_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG8229232.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNRAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            22019..25036
                     /gene="cmeF"
                     /locus_tag="SF010_000265"
     CDS             22019..25036
                     /gene="cmeF"
                     /locus_tag="SF010_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8229233.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDIANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLGK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(25060..25866)
                     /locus_tag="SF010_000266"
     CDS             complement(25060..25866)
                     /locus_tag="SF010_000266"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8229234.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(25867..26586)
                     /locus_tag="SF010_000267"
     CDS             complement(25867..26586)
                     /locus_tag="SF010_000267"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG8229235.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(26586..26837)
                     /locus_tag="SF010_000268"
     CDS             complement(26586..26837)
                     /locus_tag="SF010_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229236.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(26841..28286)
                     /locus_tag="SF010_000269"
     CDS             complement(26841..28286)
                     /locus_tag="SF010_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG8229237.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
BASE COUNT         9864 a         5155 c         3566 g         9785 t
ORIGIN      
        1 tattgatttt ctatatttga aaaattttat tttttaaaaa gtatatgtta aagtatatgt
       61 tttttgtatt attaattttt caagtatgtt cttttggtta ttttaactat aaatcacagt
      121 cctcttgagc gcaccatatt atttatcttc tttaattttt cttttagcta atcccatatg
      181 ctcgtaagca tcaatttctt ttttgtaaga tccagaaatt ttcttaagtt ctttatttaa
      241 gtaacttact gtttgtgcac ttgcattaat atttgcagcc aaagcagaaa caaattctag
      301 tttctttttt gctgcttcat ctaattcttt agaagttttt gaaccaagtt tatgtgtctg
      361 cacataaagt ttggcaagtt cttttaattc aatatccgtt agtttaacat cggaagcagc
      421 aattatcatt ttatctaagt ctgtatcaaa ttttttagtc ttttcagcta catgctgctt
      481 ttggctagtt ttttgctttt taattgtttt tttgccatca cttataataa gataagcaat
      541 cacgcctaaa aacaataaaa gcgctaaagc agcacaaaaa ataaccaaaa aaatatggtt
      601 catttaaagt ttgcccacaa aatttcgctt ccttcttgca aaaaaagcta aaaccaccat
      661 caatgcaaat ccccaataaa cataattagg aatttgagcc gcttcgcctg cagcgtaaga
      721 atgaagtcct gttaaaaagt aatttactcc aaaataagtc ataataataa cccaataagc
      781 aaacatactc cataaagcaa acacaaattg attacaatat tttggaatca ttctaagatg
      841 caaaattgct gcataaacca aaatgctaac taaagcccaa gtttccttag aatcccaact
      901 ccaatatctc ccccaacttt catttgccca aattgctcct aaaaaatttc ctacagtaag
      961 caaacaaagt ccaaaaatca ttgccatttc attaattctt gtagcctctg taatatttct
     1021 caaaatatta agattatatt ttccatcttt cttaagaaaa cacattaaga acaatgtaaa
     1081 gataccaagt aaggcacaaa gtcctaaaaa tccataacta gcagtaataa cagatacatg
     1141 aatactaagc caataagaat taagcacagg aacaagattt gtaatttgcg gattcatttc
     1201 gcttaaatgc gcaaccatta atacaacacc agataaaata gaagttaatg acaaggctat
     1261 aggacttttt ctggagaaaa atatacccga caaagacaat gcccaagcta tatacaccat
     1321 actttcatag ccattactcc atggagcatg acctgataaa taagcacgaa gtccaagacc
     1381 tactgtatga attacaaaag ctaaaacatt taaaacatat accactttaa atataaaaga
     1441 gatttttaaa ttcggtacga ccattttaga aaaaacaaga atcaagagta aaaaacccgc
     1501 aattaaatat acaggagcga gtttaacgaa aatttcagcc ttattagaaa aaatttccat
     1561 ttcaaccttg gttttactag gcatgacttt atatcctatt ttttcttgat attctttgat
     1621 aaatttcaag ccttcatcag ctctaatcca attaccatct ttaaaagcat tttccacggc
     1681 actaaaataa ttctgtatta aagccaaaac aatatgccct tcatccccct taagagtagt
     1741 tacagcagaa aaaggtgcaa accaaacatt atttggatta ttttgaacag gaataaattt
     1801 aaataattca ccactaaaaa ctaaatttac aacattagct ctttcatcta gttttataat
     1861 ttccttatca aaaactcctc ttgcatttgg gtttttacga tttgcatttt caacatattt
     1921 ttgaagttta tatcggttat tctcatcaaa gaaatcttta taagaaatat atttagcact
     1981 aggaatttct aaaatatttg caacagcatc acgaactgct tgattttgtg gcattaaaat
     2041 aaaaggttcc atttgccatt tatctacatc aacgagcatg gaaagcataa cagcgttaga
     2101 attttgaccc ttatagctat cactttgatg aattttttct aaaatttctc ttgatagcgt
     2161 atcaaaaggc accattcttc catctgctga tttttgaact attaaagtgg caagagcttt
     2221 agcatgatta gtatttacca caggtaaggt cgaatttaaa tcttgagcaa aagtcttttc
     2281 agaaccaaaa gataacaata aaataaaaat aatcacactt gtatgtttta aagtgtcttt
     2341 attaattaat cttgccaaag ttctaaatct agaatgtgga tttaaaaaat tcataaacat
     2401 tccaagacaa agcagaaaat aacctatata agttggtatt ttgcccggat ctttatttac
     2461 agataaaaca gtcccttttt catcttgatc ataagaactt tgataaaatc tatagccatc
     2521 ataatctaaa acattattca taaaaattct ataatcaaaa ttttcattat tattttttac
     2581 ggtaatttca cttgcataag aagctggaga catagaacct ggataacgat ctaatacaaa
     2641 atctcttaaa taaatatcaa aaggcaattg ttcataagaa agcgcccaag aaataaagaa
     2701 tttttgatct gcaagttcta tcataatagg tttattatat tcaaaaatat aaaattcttt
     2761 actttcattt ttatagctta attctaattt taaagcatta gagccagtta attctaagtt
     2821 tttattctta ttgcttaagg caaaatcttt aaaatgcaat aataaagaat ttttccaatt
     2881 ttgaggctcg ccaaaagtag aaatcaacat agttctaccc acttctaacc aagcagattt
     2941 aaaccataac caaaaacttt catcttgagg tctattggag ccttctaaag cttcttgcgc
     3001 atgcaaagaa gcagctttaa ctacaaagct gatatcatta atttcataga gtcttctttc
     3061 cttagcattt gccttttctc caattttaag gtctaaattt tgtccatcta gcatacttag
     3121 aaaatgtaag ttttcacttg aacttaaagt taaattttca tcaattttta caaaaggtgc
     3181 tttaacatta tcattcataa aagcaaagtt aaccccttct atattcttaa cttcaccttt
     3241 ttcaaattta acatcaacac cttgagatcc tttttgagaa agcatcaaaa ccaataaagg
     3301 atcagaatta ttattttctt tataagtata atgagcattt aagattaaat ctttatattt
     3361 taatacagct tgatcatcac ctaaattaag ttttagttta aaagaattag caaaaggcaa
     3421 atttcctata taacgatcat taaccgcact atagcgttct ccatctttta tagcagaaat
     3481 acgcaaagaa gtcttagaac tttctataag tgaattttga gtatgctctc taataggtaa
     3541 aataccttca aaaccagcat atcttgtcat tgcagaaccc actaaaataa ataaaaaaga
     3601 aatatgaaaa atcattaaag gtaatttttt aagcccaaac attttataac gaaacatccc
     3661 gcatagtaaa ttaataccaa gtaaaagttg tatatattca aaccaaaaag tatcataaac
     3721 cattgcccaa gccgtaggag ttccataagc actttcaata aaagttgcca aagcacaaaa
     3781 aagcgcaaaa agcaaaaaca atacaaccga aactcttaaa tcccctatgc tttttattat
     3841 atttttcatt ctttttcctt taaattttaa agccctaaat atttctttct aatctcatca
     3901 tcacctatta aatttttagc ctcgttttcc attacaatgc gaccattttc caaaacataa
     3961 gcataatcac ttatttttaa tgcagaataa gcattttgct ctaccaaaag aatagttata
     4021 ccctcttctt ttaaacgcac aataatatca aaaacttcac ccacaatctt tggagcaagt
     4081 cccaaagaag gctcatccaa catcaaaagt tttggttcac tcattaaagc ccttgaaatc
     4141 gcaagcattt gcgcttcccc tccactcaat gttccagcta aagcatgctt tttacttgca
     4201 agtcttggaa aaagtttata catttgctct cttaaatgct cataattttc agcattatta
     4261 aaagcaccta tttttaaatt ttcctctacg cttaaattaa taaaaacacg ccttccttca
     4321 ggaactaaag ctataccttt ttgaactaaa gtatgagtta aatgcctttt agtatcataa
     4381 cctaagaaat taacctcacc agttctttta actgagttta aaagcgcatt taaagttgaa
     4441 gttttacctg ctccatttga acctataaga gaaacaatat gacctgtttc cactttaaaa
     4501 tcaatccctt taacagcttc aattaatcca taataaacat gcaaatcttt aactattagc
     4561 atcaaaatcc cctaaatacg cagcaattac ttctttatga tttacagcat cgcaaagttt
     4621 accttcaaaa attgtttttc cataatcaag taccaatacg cgatcacaca atttatttac
     4681 aaatttcata tcatgttcta taagcaaaac gctaatttta taatcttttc gtaatttaaa
     4741 aatgagctca gcaagttcat cactctcaga gctattcatc ccagcggctg gctcatcaag
     4801 caataataat cttggttgag tagccattgc tcttgcaatc tcaacttttc tttgttgtcc
     4861 ataactcaag ctagtagcct tttcataggc aaattctgca ataccaagtt cttctaatat
     4921 tgcataagcc ttctctttaa atacttgttc tatttttcca aaacgcccta aatgcaaaaa
     4981 ggcttcaaaa atattatatt tcatttgttt attaaaacca ataagaacat tttcaagcac
     5041 attcatgctt gaaaaaagcc taatattttg aaatgttcta gctattccta aatgcacaat
     5101 cttatgaggt tttaagtgat caattctttc tcctagaaat tcaaccgaac ctgaactagg
     5161 tttatagtta cctgttataa tattaaaaag agttgttttg ccagccccat taggtccaat
     5221 taaagcaaaa atttcaccct cattgatttt aaaagaagtt tcattaatag ccttaacact
     5281 accaaaactt tttgaaattt gttttaattc caaaatcatt ttttgctcct tttaaaacgc
     5341 tttttaatcc ctctaatcac atcactcaac tcacaataac ccattatgcc ttttcttgca
     5401 aaaagcatta ctaaaatcag aacaatagaa aaaacaacca ttctaagccc tggcgttgat
     5461 tggatatcaa gatttaaaga atctattttt atatttaact catctaaaaa tctaagccac
     5521 tcacttccac caataaccaa tatcgcacct ataatagcac ctgtagtaga accaagtcca
     5581 cctaaaacaa taataatcaa aagctgaaaa gtaagtaaaa aatcaaattg agttggagat
     5641 acggtagtca acagacaagc taaaagtccg ccacctacac cttctaaaaa tgctgaagtg
     5701 ctaaaagcta aagtttttat ccaaaaagta tttattccca tagcgcttgc agcatcttca
     5761 tcatctctta tagccttcat tgcacgacca tatttagaat aaactatatt taaaattaaa
     5821 ataaccgcta caatagcaat accacctgtc caatagatcg tggaaaattg tggaatatct
     5881 accagccctc ttgagccatt agtaatagaa ggaaaattaa tagcagctat tttaataatt
     5941 attccaaagc ctaaagttac aatagccaaa taatcccctc tcacgcgaaa tacagcaaaa
     6001 gccaaaatca gggcaagtaa agatgaacaa attccagcca caattaaagc tagaataaag
     6061 gaatttgaat ggatagctaa aataaaagaa ctaggaccat ctaaaaaaaa ctgatcattt
     6121 tttgcatcag cacttaaaag aactaaagca gccgcataag ctccaatcgc aacaaatcca
     6181 ttgggttcta gtgaaaattg tccagttaca ccattaataa gattgtaact cacagccaaa
     6241 ataataaaaa tagcaatttg attaacaatg tttaatccat aatccccaaa aatataagga
     6301 gaaatgaaaa taaaaataat tgaagcaatt aaaaagatta aatgtgaaac cttaattcta
     6361 accatcatta aaacctactc ttttcaaaat ttatacctaa aattcccgta ggcctaaata
     6421 acaatataaa caccaaaaaa ataaaagcaa atgcatcttt aaagcctgat aaatctggaa
     6481 aaaaagccac aacaacaact tcagtaaatc ctataataag tccacccaaa actgcaccta
     6541 ctacagaacc tatacctcct aaaactgcag cagcaaaagc ttttaaacct attaaagttc
     6601 ccatagtagg ttcaacagag taataatttg cagcccaaaa aacaccccca actgctgcca
     6661 aagctgaacc tagggcaaaa actatagcaa taatacgatt tgcatctata cccattaaat
     6721 ttactgtttg tatatcaaat gccaaagcac gaatagctat accatatttg cttttataca
     6781 aaatccataa cactgctatt aaaataacaa atgtaagagc aggaaccatt aaagaactat
     6841 aagttgttat cactccacca aaattaacac tttcctcaaa ataacttggc ggtgtaaaag
     6901 ttctaggtgt tgaagtaaaa agcatattaa aaagattttg caagaaaaaa ctaataccga
     6961 ttgctgtaat caacaatgaa attctaggag cctgtcttaa aggtttataa gcgattctat
     7021 ctgtagctat tccaacacaa gcagcaaaaa tcattgctaa agacaaagct cctagaaaag
     7081 gaacatttag attagtcatg caaaaaagag ccgcataagc accaaccatc ataatatcgc
     7141 cgtgagcaaa attaataagt cttaacacgc cataaaccat agtatagcca acagcaataa
     7201 gggcatacat actgcctaaa ctaagtccat taacaagttg ttgtaaaaat aaagtagaat
     7261 ccataatctt tctatttttc ctttaaggat tgataatatc tttataattt tgcttctgat
     7321 ttttaatttc tttaaccact acagaacgag ttgcatttcc tgtttgatca atactgataa
     7381 caccagaaac gccttgataa tttttagttt ggtgaatttt ttcattgaca cacttactag
     7441 taagattttc aacgcaagca ttcatagcat ttagcattac aaaatacgca tcagcaccca
     7501 tagctgaaaa atttggaact tcttttgttc ccttagcttt ttcataaaca ctgataaatt
     7561 ctttgcttaa ttttgtagtt ggattattag catcaaaact atctgtgaaa atataaccct
     7621 cgcttgcatc tccagctaaa ctaataaaag tttgatcagc aactccatct gcagaaccca
     7681 taggaatatt taaacctgcg agttttgatt gtcttgcaaa taaagaagct tcactataat
     7741 aaagcggtaa aaaaataaat tctggattta aacttttaac ttgagctaca atagctctaa
     7801 aatctttatc acctgaatta actcttaaaa ttctaagaat ttgaccacca ttagacttgt
     7861 actgtttttc aaaagctttt gctaaaccta aggaatagtc agtgctttga tctactacaa
     7921 taacagcact tttgtaatta agttttgaaa aaacatattt tgctaaagat gaaccttgaa
     7981 aactatccat aaaacatact cgagaagaat atattttttt atcaagcaat ctatcaccag
     8041 ttgcagcagg agcgatcaat ggaattttat tatcttctgc tacgcgcata acttgcaatg
     8101 tattagcagt aaccatttcc cctataaggc ctataacttt atcttgagaa actaaacgat
     8161 ttgctccact cgaagattct aatttatcac ctttagtatc aataatagca agagaaacct
     8221 tatctccatt acttaaagct gattgcattg aatttgcaag tttaatccct tctagtgcgc
     8281 tttgtccata tgctgcagta gctccgctaa gcggtaaaac aactcctatt ttgacttccg
     8341 cagcacttaa acttaaactt agaatacttg ctaaaattaa actttttttc attctctacc
     8401 tttattttag taattatgga tttataattg ttttataatt ttgtttttga ttttgaattt
     8461 ctttaatcac aacagaacga atggcattac cgctttcatc tatgctaatc acaccaccaa
     8521 cagcttgaaa atctttagtt tgatgaattt tgctattaat acattcgctg ctaagattac
     8581 caacgcaagc attcatagca tttaacatta caaaatacgc atcagccccc atagccgaaa
     8641 atgctggaag ttcttttgtt cctttaactt tctcataagc tgcaacaaaa tcttttccta
     8701 attgtgtaga tggattgtta taatcaaaac tatcagtgaa aattactcca ttaacagcac
     8761 ttccgccaag atctataaaa gtttgattgt taacaccatc tcctgctgct aaaagtttat
     8821 caaaaccaat ttgtcttgct tgtctcgcaa ttaaagcagc ttcaggatga taaataggca
     8881 tataaacaaa atcaggattt aaactcttaa gttgagaaac cacagctcta aaatctttat
     8941 ctcctgaatt aataacaagt ttttttataa ttttcccacc attattctta aaagaatttt
     9001 caaaagctct tgccaaacct aaagaataaa cattgctttg atctatgatg ataacagcat
     9061 ttttaagtcc taaatcctta gatacataag tagcaaattt atctccttga aaactatctt
     9121 taaaacaaac tctacttgca tatttctttt tatctagcaa tttatctcca gatgccactg
     9181 gagctattag gggaattttt ttctcttctg ctatagaaat agcttgaatg gtatttggag
     9241 ttgtagcttc accaataatc ccaaggactt tatctgttgc tattaaacga ttaactccat
     9301 ttgaagtttc aagcttatct ccttttgtat ctattgtgat aagtttaata acatctccat
     9361 ttgaaagttt tggctgtagc ttattagcca gttcaattcc gttaaaaaca tcttgcccat
     9421 aagctgccac agttccagtt aaaggtaaaa ctactcctat attaatatcc ttagcatata
     9481 agcaatttac catagttaaa acacttaaag ttaaagttag ttttttcata gtattccttt
     9541 taattatagt ttttacattt tattttagaa atatattatg ttttgttttt tgcgcaggtt
     9601 cttcttcaag aagatctttt acttgcaaat caagcgcaaa atttccacct ttaatataag
     9661 caataatatt atctatatcc tcgtggctta aatttctagc ataaaaagcc atttgagaag
     9721 ctgttgtaga actgctacta tcaagagtat aacctatcaa agctccttta atatcctcag
     9781 gagacatatc ttttaaaatt ctagatccta taacactctt ttcagcatta tctccatggc
     9841 aagtattgca tttattttga aaatacaaag ccttcgcttt ttccatatca tattgcttat
     9901 ttgcatcaaa ggtataagta aaaaatgatt tcaagttaat accaaaaagc gcaacaacaa
     9961 atattgaact aataaacaac cagcgtgcaa tcatgatttt ccttatttta ttgtaatttc
    10021 tgtttgtgtt ttattttgat atctatgtgt ttttttgttg tatttttttt cttttttaat
    10081 atcatagcga taacgaacag tccctgaaac ttctatatct ttaaagactt catctaacgg
    10141 agctgcaaaa acaaaatgat ttaaaatcat accaattaaa aatatttttt tcatttttat
    10201 tctttaaaca caaaaaaacg attatatcaa aaaaagataa tccttgttaa tgaccacctt
    10261 tgtgtaaaaa ataaagtcct acacaaagag ctaaaatcga tccagcaaga aaagccatat
    10321 ccacaggagt agcaaatttc atctgtaaaa ccctttgaaa gaaatttacc actaagacca
    10381 taatgataac ttttgcaagc ttgtctttta attgatctaa gctatgcacc tctaaaacct
    10441 tgctttgttt tgtttgttta aattcttcta tttcgctgat aaaaagctca taaactccaa
    10501 aagaaaaaat aaacaaaact aaagccataa gataaagatc aacagctcct ataattaaag
    10561 ccaccacatc ctcatgcaaa tccacattag aacctgcatc aaaaaaataa ttataagtat
    10621 aaaatataac ttttaaaaca tcataacttg caataaaaaa caatacaaaa gctccaatta
    10681 aaccaaaaat tacgggtaaa attgtaacaa tacgacttct aacaagtaaa gattcaaata
    10741 ttttctctaa catttttttc cttatttatt ttttaattct aaccattttt gcgcaatacg
    10801 cacagcattt gttgcagcac ctacacgaat ttgatccgcc acacaccaaa gatggagtat
    10861 ttttttatca tacacatcag cacgaattct tcctacataa gtttcattag tatcgctagt
    10921 cattaagggc atagggtatt ttttattttt aggatcatct atgacaataa cacttggtgc
    10981 tttttctaaa atttctttag ctttttttac atctatttct ttttcaaaat gcatagtaat
    11041 ggcttcgcta tgacttctta aaacaggcac tcttacacaa gttgccgaaa cttctaaatt
    11101 tttatgtaaa attttttgag tttcattgac cattttaagt tcttctttag tgtaatcatt
    11161 atccataaaa acatcaattt gtggaataag attaagtgcc aaagtataag gaaaagtttg
    11221 aggttcaaat tcatcaagtt taaaagcaaa aaaactttgc atggcttcaa ccaattcttg
    11281 cattccttct tttcccgctc cacttgcagc ctgataggta cttacatcaa cacgctttaa
    11341 attaaatgca tcatttaaag gttttaaaac ttgcaccatt tgtatagtag aacaatttgg
    11401 attagcaata atccctgttt ttttccaatc tttaatatcc tcaggattgc attcaggaac
    11461 caccaaagga acatcttttt ccattctaaa atgacttgta ttatcaatta caatagcacc
    11521 tgattctact gcaaatttag catatttttc actcacactt ccacctgcgc taaaaaaagc
    11581 aatatcaata ggattttctt taaatacatt ttcggtaagt tctttgactt tataagcttt
    11641 gcctttaaat tctacttcac tacctacact ttttgcactt gctaaaggta aaatactttc
    11701 cactgggaaa tcaagttcat ctaaaacatt taaaagctct tccccaaccg caccagtagc
    11761 acccacaatg gctatttttt gtttttttga cattacttat cctttatttg atatttttta
    11821 attttttcat ttaaaatttt tatatccata cctaaaattt gagaagcttg atccttgtca
    11881 taatctacac ttaaaagaac ttcacaaatc aattcttttt ctaaattctt tacatctttt
    11941 tttatacttc tagcttctaa gaacaaatct tcacttgaaa tttcatcatt ttcacttaaa
    12001 atacaagctc tttgtacaac ggatattaat tctctaatat taccaggaaa attatattca
    12061 agtaaagcat ttttagcttc ttgactgagc tgtttttcct taaaatcata ttctttacaa
    12121 gtatcttcta aaaccttttg agctatacct aaaatttctt ctttacgctc tcttaaaggc
    12181 gggatattaa taggaacagt gtttaaacga taatataaat ctgaacgaaa ttcgccattt
    12241 tttatttttt catccaaatt tgcattagtt gcactgataa ttcttacatc tattttgatg
    12301 ctttttgtac ttccaagtcg cgtaatttct ttttcttgca aagctcttaa aagtttggct
    12361 tgaatttcat aaggcatttc gccaatttca tctaaaaata aagtgccctc attagccatt
    12421 tcaaaaagcc ctattttagt tgcattagca tcagtaaaag cacctttttc aaaaccaaaa
    12481 agctcacttt caatcaaatt tgcaggaatg gctgccatat taatagcaac aaaaggctta
    12541 ttagagcgtt tagaatgagt gtgaatataa cgagaaaata cctcttttcc tactccactc
    12601 tctccaaaaa acattacaga ggcatcagtt ttagccgctt tttgacttaa atttaatgtt
    12661 ttttctaaat taggagaagt tgaaaaaaaa tctttatttt cttctttttt ttcatttttt
    12721 ttgctttttt tatcggctgt tttttctctt atgattttag cacgcttaat agcctcgact
    12781 aaagtatcaa catcaaaagg cttggttaaa aaatctttta ctcccaaacg aaccgcttct
    12841 atagcacggc ttaaagtagc atttcctgtc ataataataa aatcatattt attttcacag
    12901 gctttaacaa attctatacc atcaattcct ggcatattaa tatctgtaat aatcaaatct
    12961 gtattctcat ctattttttt taaagcttca gtagcagatt tataagattt aatattaaat
    13021 tcttcatact ctgctaatgc aatttctaag gatttgcgca tattaatatc atcttctact
    13081 atgactaaat tcatcctaag ccttttaaaa aatttctact atagtatcca atttgcgctt
    13141 aattttgaat ttactttttt ttaagataat aaattatcgc attttgttcg ccaaattcca
    13201 cggtaaaacg caagggtaaa attttaacat aagtttcact ttgagcacgt aataagtcag
    13261 tattaacaat atccttaaca ctgattctag cccctataaa gcaatcgctt aactcatctt
    13321 tatgagaatt taaaaaatta aatttaattg tttttggcat attatcatca atcaatccta
    13381 aagaagttcg aggtaaaact tttaaatctt gatcactata agaaatttca catacccatt
    13441 gttcttcaac attttcgctt tgcgtcattg ctaaggataa attttgattt tgatgaaaga
    13501 gaatgaaatt tttactagaa agctctgccc aaaaaataaa ttcatcttgg gcaaaaagct
    13561 taaagctaag aaagattaat aagcaaacaa ttctttccac ttgtctgcat cgattttaag
    13621 ttctaagttt accctataaa gcccttgatt aaaattctga tcaataatac ttgcattttt
    13681 tatcaaacca tttacttgcg cagtaatagt tgaacttcta agcattgcat cttttacggt
    13741 gtctttacca ttcactttca caccataaag cttacttgca agctgtctgt aagcatctgt
    13801 aatcgctgct ctttttgcta aagctagggc ttgagcagta gaaactgtat tcatcggagc
    13861 aatcccttca ccaactgctg taaaactaag ttccgtttcg ctagcatctg gagccaacat
    13921 tttttcttct ctgataatat cacgcacatc atctttatcg actttttgca cgataacatc
    13981 ttgagatggg gcagtgctat ttgcacttga atttttagtt gcactgtttg cacttgatac
    14041 acaaccagcg aaaattcctg ctattgctag cataaaataa atttttttca tttttacacc
    14101 ttcaaaatat tgtaattagt aaaaaataaa aagcaataag cgttccaact ttaaacttat
    14161 tacaaatcta aaccaaagtt ttcatcgctt aactcatcct catcattttc ctctttagga
    14221 cacttagcga tgctaaccac ctcgtcattt tccacattaa ctacaatgac accactcgta
    14281 ttacgccctg cttttctaat gctttgcata tcaacacgta tcatcttgcc tgaacttgta
    14341 agagccatca aatccatagt ttcatctact ataactacgc taataagatc tttggttttt
    14401 tctgtaagtt tcatacaaat tacaccctta ccacctctgc tttgcaatct atattctcca
    14461 gcatttgtgc gttttcctat accttttgca cttatgctta aaatttcttg ctcatcattt
    14521 tctataacaa ctgcacctac taattcgtca tttttctctt taaacttaat agccgtcacc
    14581 ccacgactta cacggccgat ttcacgcact ttagcaagtg ggaatttgat acacatacct
    14641 tttttggtta ctgcaaagag cattttacct tgtgtgctta cactttcttc attttcaaga
    14701 ttttcatcat ctaaattttc aatttcttga ttttctaaat tttcttcacc accagtggca
    14761 aaaatttcat cttcatctct ttgaacaata atagcagtta ccaactcatc attttcatcc
    14821 aagttgatcg ctctaactcc cacacttctg atattttgat attcactcaa atttgtacgc
    14881 tttacaatac catttttagt aaagaaacat aaagatttac tctcatcaaa atccgtggtt
    14941 ggaataatag ccatgatttt ttcttcagct tgtaaattaa taagatttac cactgctttt
    15001 cctttagccg ttcttgagcc ttcaggaatt ttataaactt taagccaata aagctgtcca
    15061 cgatctgtta caaacataag tgtatcatgt gtatttgccg taaagaaact ttctataaaa
    15121 tcatcatcat aagtcgtaac ggctaatttt ccttttccgc ctcgtttttg cttttcatat
    15181 tgtttactag gcacacgctt aatataacca cgatgcgtaa tagttacaac catattttca
    15241 ttaggaatca aatcttcaat atcaatatca tcataatcat cttcaatttg agtaatacgt
    15301 ggcacatcaa atttacttct aatttctttt aattcatcgc gaattaaatt ttcaagcaag
    15361 gtttcacttt ttaaaatttc ttcaagtctt gcaatttctt tcattaattc tgcaagttca
    15421 ttttcgattt tttctctttc aagtcctgtt aaacgaccaa gtttcatatc taaaatagca
    15481 ttggcttgaa gctcactaag accaaattta gctaccaaag aatctcttgc ggtattatta
    15541 tcagaactat ttttaattaa agcaatcact tcatctatat tatcaagtgc aattttaaga
    15601 ccttctaaaa tatgagctct tgctcttgcc ttttgaagtt caaaaatcgt tcttctaata
    15661 ataactgttt ttctatgggt taagaaaaga tttaaaagtt ctaacaaaga gaaaatttta
    15721 ggttctttat tgtgaattgc caacataatc acaccaaaag tactttccat agtagtagat
    15781 ttaaatagat tgtttaaaac aatttcactc atagcctcac gtttaagctc tataacaacg
    15841 cggattcctt ctttattgct ctcatctctt acttcagata ttccttcaat ttgcttttct
    15901 ttaacaagct ctgcaatctg ctctataagc ctagctttat tggtttgata aggaagctca
    15961 tctataacaa taacatcttt atttgtcttt ttttcaatat gagttttagc gcgcactttc
    16021 acgcgaccac gccctgtgcg ataagcttct ataatacctt ttttaccata aattattcca
    16081 cctgttggaa aatctggacc tttgataaac tgcataatct cttctaagct tgcatcttta
    16141 ctatcaagca aatataaaag tccatctatc aactcattta aactatgagg tgggatgttt
    16201 gtcgccatac ctacagctat accacttgaa ccatttaata ataaatttgg aaccctagaa
    16261 ggtaagacat caggttcact ttctgaacca tcataatttg gaacaaaatc gaccgtatct
    16321 ttatctatat cttttaaaag ctcatgagaa agtttactca tttttgcttc agtataacgc
    16381 atcgcagcag cgctatcacc atctatagat ccaaagttgc cttgtcctgt aatacttgga
    16441 tatctcatag aaaaatcttg agccattcta accaaagcat cataaactgc tgtatctcca
    16501 tgtggatgat aacgacctat aacagcaccc actatacggg ctgatttgac aaaatctgtt
    16561 ctactttttg cctcatcatt ttgcatagca tataaaattc ttctatgaac aggctttaaa
    16621 ccatctcttg cgtcaggcaa agcacgacct ataataacac tcatagaata gtctaagtaa
    16681 ctacctttta tagaattttc tatatctaca agttcaatat cagaatcttt gctaaaaata
    16741 ttctccataa aaatccttct attagttcaa agttttgatt atagcatatt aaacttttgc
    16801 atcagctaaa acaagagcaa aaagtacaga aattttattt tcttctaaaa cttttttagc
    16861 ttccaaaagg ctagaaccag tcgttacaat atcatctact aaaattacag gttcgtgaat
    16921 ggtttttaag agtttgtaat ttcttttatg tttttgacga aattctaaac tttttccaga
    16981 atatttaata tgattttgtg cttttaaaac attaaaaaca ggttttacaa attttgtttt
    17041 aagatatcta gctaaaatag cagaatgcga ataaagcata tcttcaacct tatcatctaa
    17101 agctataaca ttaattgtca ttctaggatc aaaaaaatct ttaaattttg caaaacttaa
    17161 tttagcaagc attttataaa caaaataacc ataaaaataa tgtttagagt gaagcaagtg
    17221 ttgtatttca tggtatttat aaaaagaata gactttgaaa ttattatcaa gctttcttac
    17281 atttaaggaa aattcagaaa gctctagctc gcataattca caaaagcaaa gcagagcaaa
    17341 agctccgcaa tttatacacc tcaaagttca gagattaaac tagctgcttt atttgccatt
    17401 tgttttatta acaaatgagt ataaaaagtt gtttctttta aatcatcaaa accttgtaca
    17461 tcttgcttgg tacggattgt aaatttctta tttttattta tatcactaac ttgtaaaact
    17521 cctactagtt ttgaatgtaa tcctatagca tcttgagttg ctccataaga tataaattct
    17581 aaatcaatct tactcacata aggtgaattt tgatcgttat tgtcaagcac aactattcct
    17641 ctagcttcaa gttcttgttt taaataagta taaaataccg cattaaaatt cacatcaaca
    17701 aataactttt tccctttagc atttaaaacc ttttgccctt cttttaaatc ataaaatcta
    17761 tgtaaataaa cctttttcaa agcaatacca gtgtctaaag tgcgtttatt ggcacaacat
    17821 tgaattccaa catcgctaat atataaaagc cctttaatct ttgcttcaaa accaccagga
    17881 ctttcacaag aactgcattg agaattttta gaaatttgat taacttgagc aaaagtatct
    17941 tgtttagttg cacaagcact caaaaataaa ataggcacta taaaaatcaa aaatttttta
    18001 aacatttttt ctccttagaa aattatttta aaattgtatt aaaaatacaa gcaaatttca
    18061 agccaagttt taaatttatc atcaatctat ctttaaaaca ctcaaaaaag cctcttgagg
    18121 taaatttacc ttacctatag ctttcattct ttttttacct tctttttgct tttctaaaag
    18181 ctttcttttt ctagtaatat ccccaccata acattttgct gtcacatttt tacccatgga
    18241 tttaacagtt tctcttgcga tgattttatt tccaatactt gcttgaatgg ccacttcaaa
    18301 aagctgtcta ggaactattt ctttcatagc actaacaagt tctcttcctt tactttgcgc
    18361 tttttcatta ggcacgataa tgcttagcgc atcaacattt tcacccgcta ccttaatatc
    18421 aagttttacc aaatccccta ctctaaattc tataggctca taatcaaaac tcgcataacc
    18481 ttttgttaag gactttaatt tatcataaaa atccatcaca atctcattta aaggcacatc
    18541 atattctagc aaaacacgct caggtgtgat atagtccatt ttaacctgta ctcctctttt
    18601 gcgatttaaa agagtgatta aattccctaa aaattcactt ggagtaatga tagtagcttt
    18661 aacataaggc tcttttatat gatcgatttt attaacagga ggaagctcgc taggattttg
    18721 aattttaata aactctccat cggtttgata aatttcataa gtcacagttg gagctgtagc
    18781 aatcaaatca agattaaatt ctctctcaag cctttctttg ataacttcca tatgtaaaag
    18841 ccctaaaaat cctaccctaa aaccaaagcc taaggccaaa gaagtttcag gctcataagt
    18901 aatagaacta tcattaagct ttaatttatc caaagcatct cttaaatctt caaatttatc
    18961 cgtttctata ggataaagtc ccgcaaatac aaaagcttta gccttttcaa aaccacctat
    19021 ggcttcttta gctttgtttt ttaccaaagt gatggtatcg cctacttgta catcacctac
    19081 ggttttaagc cctaaaacca ccacacctac ttcgcctgat tgtaaagatt gagttttaat
    19141 tggacttaaa gggtggggat aaaaaagatc ttgaactata tgttttttat ccgtactcat
    19201 gactaaaact tcatcgtttt tagcaatact tccttcataa atcctaacca aagccaaagc
    19261 acccaaataa ttatcaaacc aagaatcata aattaaagcc ttagtaggag cttcatcatc
    19321 tgtttttggt gcagggattt tagtaataat tgtttctata agctctttta tacccactcc
    19381 tgtttttgca ctcacacaaa ttgcatcttt gcaatctata cctataatat gctcgatttc
    19441 atgctttact ttctcaacat cagcattagg taaatcgatt ttattaatca caggaatgat
    19501 ttcaagatta ttttcaagcg ctatataaac attagctata gtctgtgctt caacaccttg
    19561 agaagcatct actacaagca aagctccttc acaacttgcc aaagaacgac tcacttcata
    19621 agaaaaatcc acatggccag gagtatcaat aagatttaaa acaaaatttt cattattaaa
    19681 tttataattt aaacgcactg attgtgcttt tatggtgata ccacgctctt tttctatatc
    19741 catagtatcc ataacttgtg aactcatctg cctatcgcta atagcaccac actcactaat
    19801 aatcctatct gcaagagtag attttccatg atctatatga gctataatag aaaaatttct
    19861 aatatttttt accgacaaaa tttcatccta aatataaaat tttaaagcta ggattttaac
    19921 aaaatttatg tttaaaacaa ataaatttta ttttatataa aaaacttcaa ttgaaattta
    19981 tataaagtat attaaaatat caaaatgttt aaaaaatatt taaaatcagc tatattttta
    20041 gctctttatc ccttagcaat gttagcttct aatttgcacg aatttatagc actaagtcaa
    20101 aataatgaat cctatctcat taagcaaatg caaagcgaac aagcaaattt agacaaagaa
    20161 caagctttta gaaattacct accctctctt agtctaagct cagcttatgt agccaacaat
    20221 aaagatcgct tcattatcga tccacaagaa agtttatttg ctaaagtttc tcttaatttt
    20281 ttgctttttg atggaggtgc tagagaggct aatttaagag ttttagaaag cagagaaaaa
    20341 ttaagccttt tagacaaaga acaaaataaa aattaccttg ccctaaatgc aatcacactt
    20401 tattttaaca ccttaagtct tgaaaaaatt ttactagcca atcaacaaaa agtatctttt
    20461 ttaaaatcaa cttttgaaag attgcaaaaa ttttacgacg caggacttag ccctaaagat
    20521 gaacttgaaa gcattaaggc taaataccat ttaagcttat tagagctcag tcaaaatgaa
    20581 ttaaaacttg ccaatataca aaaagagatt aaaattttaa gcgatacaga ttttaaagtg
    20641 caagggaatg cttttttaga aaatccgcaa caagaaaaaa gtcaaaacta tgaagtaatg
    20701 atagctaaag aacaaatcaa tcttgctaaa gaaagtgtaa atttggcaaa agctgaatat
    20761 tttccaaaat tttatattca agataatttt aacttttata aaaacaatta taatccaaaa
    20821 gttccagctc cttttgcaaa tttagcggat caattcttag aaaaatattc tcaaggtaat
    20881 caatttattt taggtatgga atggaaaatt tttgatttca atgcaagggc taaagaagtt
    20941 gaaaaagagc gtttaaatgt tcaaatagcc aatgcaaatg caagatttag cgagagaaaa
    21001 aataaagaag aattaaatta tttagacaaa agtttaaaag ttttacaaga acaaatttta
    21061 gctcttaatc ttagcttaaa tgctgcaaat ttagcttttg aaagtgtaga taaaaaatac
    21121 caagcaggac ttgtttctta tgtagaatat cttcaagctt tagaggctaa atttaaagca
    21181 caaagcgatt tagagcttgc taaaaatgaa tttgaaatta ctaaagcaaa ttattatttt
    21241 aatgcgggta tagatcttaa ttcaaaggtt aaagaatgaa aaaaattcta tttttacttc
    21301 ttgtttttaa ttgcgccttt ggcgaagaaa tttacgcaag tttcaatgta gaagcatcaa
    21361 aacaaagcaa acttgccctt gaaagcatag gtttggttca aaaaattcct gtagaaattg
    21421 gacaaaaagt cagcaaagga gaacttttac ttgctcttga tcaagaaagt gaaaaaatag
    21481 ctcttcaaaa tgctcaaaat tcttatcaac ttgcccttgt agaatacgaa aataccaaaa
    21541 gtaggatgca aaaaatcaaa gctgtagaaa atgttataga caaacaaagc tatgaagata
    21601 tgaaagctaa gtttgatgct gctaatttaa atttaaacag agcaaaaatc aatatagctt
    21661 attataaaaa tatcatggca aaaaaagaat tacgcgcacc ttatgatgct attatcgcaa
    21721 acaaatttat acaagtgggc gaaggagtag gaggagtagc tcaaccttta atagaaattt
    21781 tttcctatcc acaaagcaaa ctgattttaa gttttgatga aaaatataaa gataaagtta
    21841 gattaggcga tgatttcttt tataaaatcg atcaaaatgg tacagaattg aaaggaaaaa
    21901 tcagccttat ttatccaagt atagaagtaa aaacaagaaa aatttatgct gaagtgcaaa
    21961 ctacaaatct aacaccaggg ctttttggtg aaggtagaat catcactaaa gattaaaaat
    22021 gtttaaacta gctataaacc gacctattac cgtgctaatg tttttcttag ctcttatgat
    22081 ttttgggcta atctctgctt ttagcatgag tgtaaattta tttcctaatg tttccatacc
    22141 tcttataaaa atcacaagca agataaatgg ggatttaaat ttcgtagaat caaaagtcac
    22201 taaagaaata gaaaatgctt taagtgaaat cgatggagta aagaccataa cctcagctgc
    22261 atatgataat tttagtgtaa gtgtagtcga gtttaaactg ggtaaaaatc ttgaagtagc
    22321 tgccaatgat gtgcgtgata aaataggaac tttaagccta ccttctaagc ctgaaattga
    22381 aaaaatcagt tcagattctg gttctgctat ttcacttttt ctatattcta aagataaatt
    22441 acaactcatg cgtgaaatca atgacaaaat aaaacctttt ttgcaaagag ttgaaggagt
    22501 aggtaaaatc gaagctaagg ggtttttaga accccaaatt cgcatagaat taaaaccaaa
    22561 cgaacttaga aaatacaatc ttaacgccct tgatatagca aatatcatca aaagtcaaaa
    22621 ttttaaacaa gccctaggcg aacttaacaa caatcaagat aactatatca tcaaaggcta
    22681 ttttgaagcc acaaatttag aagaacttag caatcttcgc ataaaaacag gagtattttt
    22741 aagtgatatt gctaatattt caagccttta tgaagatgaa aaacaaagtg ctttatacga
    22801 aggtaaagaa ggggtgcttt tagaacttgg aaaaatcaca aattataaca cccttgaaat
    22861 gattaaaaat gtcaaaaatg ccttgcctat tttagaaaaa caaattccaa aagatataag
    22921 cattaatatg ctttatgata aaagcttaaa tatccacaag cacctttctc aagtgatttt
    22981 tgatatggtt ttggggattt ttctaaccct tgttatcgtg tttttatttt taagaaattt
    23041 aagtgcaact ctcattgctt gcatagctat acctacttct atcatttcaa ctttttttat
    23101 tatcgatctt ttaggctatg atttaaaccg cttaactttt atagctttaa ccttaagcat
    23161 aggaattttt atcgatgatg ctatagtagt gattgaaaat attgctaaaa aactaaaaac
    23221 ttatccgcct ttacaagctg cttttttggg tatcaatgaa ataggtttta gcgttttaag
    23281 cataagtata gttttacttt gtgtttttat ccctatttct tatatgaact ctatatcagg
    23341 gctttttttc aatgccttag gcataagcgt tgcaagtggg atagttataa gctttttggt
    23401 ttctgtattt ttaataccta gtattggggc aagattttta aatccaaaag aaaacaagtt
    23461 ttatgaaaaa acagaagctt tttttgaaaa aatagagcaa aagtatgaaa atttactcta
    23521 taaaatttta caaaataaag taaaatttat cctagccact cttgttttta tagggctttc
    23581 ttttgcttta gccactcgca tagggcttga ttttttacct atggaagatg atagtgaaat
    23641 tcaagttttg cttgaaagca aaaaggattt aagtttagaa gccatgaaag aaaaaagttt
    23701 aaatttgctt ggaaaaatca aaaatgatag caatgtcaaa tacgcttttt tacttgtagg
    23761 ctatgatgat gccaaagatg ctacaaaggc taaaatttat gttaaactta aaaatttaga
    23821 cgaaagaaat ttaagacaaa gtgccatagt aagtttatat cgtcaaaaat ttcaagatga
    23881 aagtttaaaa atcaaaattt tagaacttcc aaagatagag ggtgcaggca ttgatgatcc
    23941 cgtgcaattt ttaatcttag gagatgattt aaacactcta aaagaagctg cttctcaggc
    24001 aaaagaaatt ttaggcacta atgcgcgcat tgtagatata agcgataatg ctaatgctac
    24061 aaaagatgaa gtagccttac acatcaacaa agaaaaagcc aaacttttag atgtcaatcc
    24121 tcaatatatc gctggggttt tagggtattc tttctcgcaa cttagcgtag gaagcatgga
    24181 tagaggcaat tcaaaagatg atattatcct aagttttgct ccagaattta aaaaaaacat
    24241 agaagcttta aagcgcatta gcattaaaaa caaccaaggt ataaatttag aactttcaag
    24301 cgtggtggat tttatataca gtaaagattt aaaaactatc aatcgttaca ataaaaaccg
    24361 ctctgtgaaa atcacagctg gagtgaatga tctttcctta ggagcggtgc aaaaactttt
    24421 actagataat atggataaaa ttttaaataa caatccaagt cttagctatg ctttttcagg
    24481 ctttatcaat cttttaggtg aaaccgtgca aggttttgct atggcagtag cacttgcttt
    24541 tgttttaatt tatcttgttt tagccgcact ttatgaaagt tttattctgc ctttaatcat
    24601 catgataacc atgcctttag cctttggcgg agcttctata gggcttttta tcacagggca
    24661 taatttttca ctttttgtac ttattgccat catcttactt tttggtatgg tggggaaaaa
    24721 tgctatttta ctcgtagatg tagctaataa aaaatgccat gaaggtttag atcccgataa
    24781 agctctttta atcgctggaa aatcacgctt aagggctata ttgatgacaa cttttgctat
    24841 gatttttgct atgctcccac ttgctctttc aaggggtgcg ggctatgaag ctaattctcc
    24901 tatggcaata gccattatct ttggacttat aagttcgact ttgcttacct tactcgtagt
    24961 acctgcactt tttaaatttt gttttaaact agatagcaaa ttaagaaaaa tttatgagag
    25021 agaaaaatta aattaaccaa aatgattaat ttaatttttt taagtattat tcttataaag
    25081 tgcttttaag ttatcatagg cgatttgtat tttttcaaac tgttctcttg cgtaagcttt
    25141 ttctattgca ctttttcctt gatgaaaatc aggatgataa agttttacca aaatcaaata
    25201 tttttgtctg atttcactaa gatcattttg cggagtgcat tctaaagtat taaaataatt
    25261 actaaaaagc ttagctaaag cattaaattt ccatttcata ttttctttat tgtgaatatt
    25321 ttggcgaaat tttttatact cttcgcggtc aacttcaaaa ttcacgcaat attttaaatg
    25381 ctcgctctca tctgcaaaag cttcaaaaag ttcaagggta ttctcgtttt tatattctaa
    25441 aattagaata tttgtcattt cattatattc tatattatga tcttgaaaat aatttcttat
    25501 ataagtaata aataattttt cattagagct taacttcatc aaaattctac ccgcaacaaa
    25561 atcaatcttg ataaacaaca taggcttaag catattattt tgctcaaaaa ttaatctaaa
    25621 agttttaaaa tgagcatctt gtaaattctc tataccttca tttgtgcttt tacgatattt
    25681 ttgatctaaa acttttaaga aataacggcg ctgtggaatt tcattttctt caaaaaaaga
    25741 aaaaatttta ttttttcgtc ctataacctt tgtgaaattt ttggtaatca agtctttaaa
    25801 atactgaaat acgctaatat catctgtatt aacattgata gtttctaaag tttgcacgat
    25861 ttgcatctat ttctcccata aaacctcatt ttcaaaaagc tctttagtgc cttttaaaat
    25921 ttcattgggt gtataatcgg ctttataaga taaagattga cactttttta caaaataccc
    25981 aagataaata taatctaagt tcattttttt agctatttgt atttcattga gcaaagaaaa
    26041 tttacccaaa gaaaaatacg aaaaatcagg atcataaaaa caataaatgc ttgaaattcc
    26101 atcctctaaa atatcaatca aatcaacaca aacgagctta tcttctatat aaaatgcaag
    26161 ctcatatcca aaattcataa aaccatcgac ataaagatta taatactgtt taaagcttaa
    26221 atcataacgc ttccagttct ttttttcttc cataaaacga tggtatttat catataaaaa
    26281 caaatgttca ttgcttaaat tgggcgttct aagtataact ttggtgttaa tatttttatt
    26341 tacaaccctt ctttcacttc ttgaaaaatt atattcatta actaaaattc taagacttaa
    26401 acattcatca caatctttac aaatagggcg tgaaaaatac ctaccaaaac gacgccaacc
    26461 tcgttttatt agctcattat tgatttcttt agggcaattt tcaatgtatt tatactctat
    26521 tcttgaacgt ttatccttta agtaaggaca ctgatcttca agagtacaaa aaccaatctc
    26581 aagcattaaa ttttcttaat atctgtattt ttgataaatt cggaaaattc atcctgtagt
    26641 ttttcttgct ttaagaaaat ttcttgcatt tccttatcta tgtttgtttc ttgatttttt
    26701 tcgcgaatat ctttagctag tttttctaaa ttttttacac ttgcaccact cttgcttgat
    26761 ttcttcgcta attttgaagt attggtgtta gcttgcattt cttttttaat acttttaaga
    26821 ctgtctaaaa aatccatcta ttattcccta ctttctcgta tttttttaag cgtagcagct
    26881 attgcagcta taacttcttc tttattttct tgatgacgat cttctgtttt ttctaataat
    26941 tcttgcatat gtgtttctat gaaagaggtg tctaaatacc cccttctaaa ttctcttgtt
    27001 tttgtaatgg caattaaaaa tggtattgtt gttctaatat catcaatcac aaattccttc
    27061 aaagcacgct caagtttatt aaccgctaaa tcataacttg ttgctttaat aataagcttt
    27121 gcaagcatgg aatcataata aggcggcaca gtatagtctt tataaatatg actatcaacc
    27181 ctaacagatg gtccaagagc tgggtagtat tctcctattt ttccaggact tggaataaaa
    27241 tttttccata cattttcagc agtaattcta gcttcaatag caaaacccct aggtttaata
    27301 tcgctttgtt ctaagtccaa aatttctcct gctgcaatac gaatttgtct tacaataaga
    27361 tcaatacctg taatttcttc agtaattgga tgctcaactt gaattcttgt attcatttcc
    27421 ataaaataaa agcgattata atcatcaagc aaaaactcta tagttccagc atttgtataa
    27481 cctacagcct tagcagctgc cacagctgta acacccatgg tttttctaag attatctgaa
    27541 attccagggc aaggtgctat ctcaattacc ttttgatgtc ttctttgaat agaacaatcc
    27601 ctttcacaaa gatggataat atttccgtag ttatctccta aaatttgaaa ttctatatgt
    27661 ctgggattaa ctacatattt ttccataaat acttcatcat tattaaagta tgttaaagct
    27721 tctcttttgc aagattcaaa ggcattttca agatcttgtt ctttatgaac aacgcgaatt
    27781 ccgcgtccac ctccaccacc tgaagctttt aaaataacag gataaccaat cttctcagca
    27841 aaaattttaa tttcttccat gctataggaa tttaattttt cagtccctgg aacaataggt
    27901 atgccatttt tagccattaa cttacgagcg atatttttat ttcccatctt atggattact
    27961 tcagattttg gacctataaa aataattcca gcatcttcac aagccttagc aaattcgtaa
    28021 ttctcactta aaaatccata accaggatgg atcgcatcag caccacaagc cttagcaatc
    28081 tcgacaatac gagcaacatc taaatatcct cttatagcat ccgttcctat gcgataagcc
    28141 tcatctgcga tttttacatg caaacattca cgatcaggct ctgtaaaaac tgcaacactt
    28201 ttaatatgta aatctctaca agcacggatt actctaacag ctatttcagc tctatttgct
    28261 atgagaattt tatggatttg attcataatt tgcctttttt gttatatttt tattgttaat
    28321 tttagcaaat tttccttaca aaaacttagc aaaaaattta atttatttta
//
LOCUS       DARGEX010000007        28007 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.007, whole genome shotgun sequence.
ACCESSION   DARGEX010000007 DARGEX010000000
VERSION     DARGEX010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28007
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.007"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(35..382)
                     /locus_tag="SF010_000270"
     CDS             complement(35..382)
                     /locus_tag="SF010_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229238.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(481..1054)
                     /locus_tag="SF010_000271"
                     /pseudo
     CDS             complement(481..1054)
                     /locus_tag="SF010_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1056..1379)
                     /locus_tag="SF010_000272"
     CDS             complement(1056..1379)
                     /locus_tag="SF010_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG8229239.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRK"
     gene            1623..2969
                     /locus_tag="SF010_000273"
     CDS             1623..2969
                     /locus_tag="SF010_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HEG8229240.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            3153..5150
                     /locus_tag="SF010_000274"
     CDS             3153..5150
                     /locus_tag="SF010_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG8229241.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGYLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            5225..6028
                     /locus_tag="SF010_000275"
     CDS             5225..6028
                     /locus_tag="SF010_000275"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG8229242.1"
                     /translation="MENLYALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVLILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            6160..7968
                     /locus_tag="SF010_000276"
     CDS             6160..7968
                     /locus_tag="SF010_000276"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG8229243.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            7965..8483
                     /locus_tag="SF010_000277"
     CDS             7965..8483
                     /locus_tag="SF010_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG8229244.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            8522..9613
                     /locus_tag="SF010_000278"
     CDS             8522..9613
                     /locus_tag="SF010_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8229245.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANILAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            9655..13114
                     /locus_tag="SF010_000279"
                     /pseudo
     CDS             9655..13114
                     /locus_tag="SF010_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            13195..14223
                     /locus_tag="SF010_000280"
     CDS             13195..14223
                     /locus_tag="SF010_000280"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG8229246.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKIILQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            14233..14679
                     /locus_tag="SF010_000281"
     CDS             14233..14679
                     /locus_tag="SF010_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8229247.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVVDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            14683..15528
                     /gene="argB"
                     /locus_tag="SF010_000282"
     CDS             14683..15528
                     /gene="argB"
                     /locus_tag="SF010_000282"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG8229248.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKVTIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            15532..16719
                     /locus_tag="SF010_000283"
     CDS             15532..16719
                     /locus_tag="SF010_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG8229249.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKSGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNTVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKSVKVFKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(16738..17367)
                     /locus_tag="SF010_000284"
     CDS             complement(16738..17367)
                     /locus_tag="SF010_000284"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG8229250.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            17456..18004
                     /locus_tag="SF010_000285"
     CDS             17456..18004
                     /locus_tag="SF010_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG8229251.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESGIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(17973..19346)
                     /locus_tag="SF010_000286"
     CDS             complement(17973..19346)
                     /locus_tag="SF010_000286"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG8229252.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(19333..20355)
                     /locus_tag="SF010_000287"
     CDS             complement(19333..20355)
                     /locus_tag="SF010_000287"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG8229253.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(20369..20779)
                     /locus_tag="SF010_000288"
     CDS             complement(20369..20779)
                     /locus_tag="SF010_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8229254.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKESFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(20780..21388)
                     /gene="pyrE"
                     /locus_tag="SF010_000289"
     CDS             complement(20780..21388)
                     /gene="pyrE"
                     /locus_tag="SF010_000289"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG8229255.1"
                     /translation="MNLGQIYKDCGAYLEDHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(21391..21954)
                     /gene="frr"
                     /locus_tag="SF010_000290"
     CDS             complement(21391..21954)
                     /gene="frr"
                     /locus_tag="SF010_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG8229256.1"
                     /translation="MIMLSEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTINITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDAYTIKIDESVKSKESELLKV"
     gene            complement(21964..22335)
                     /gene="secG"
                     /locus_tag="SF010_000291"
     CDS             complement(21964..22335)
                     /gene="secG"
                     /locus_tag="SF010_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG8229257.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAAQLPSDVNSSK"
     gene            complement(22439..23134)
                     /locus_tag="SF010_000292"
     CDS             complement(22439..23134)
                     /locus_tag="SF010_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG8229258.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVIGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            23295..23930
                     /locus_tag="SF010_000293"
     CDS             23295..23930
                     /locus_tag="SF010_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG8229259.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            23927..25810
                     /locus_tag="SF010_000294"
     CDS             23927..25810
                     /locus_tag="SF010_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG8229260.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(25833..26804)
                     /locus_tag="SF010_000295"
     CDS             complement(25833..26804)
                     /locus_tag="SF010_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG8229261.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(26814..27995)
                     /locus_tag="SF010_000296"
     CDS             complement(26814..27995)
                     /locus_tag="SF010_000296"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG8229262.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDYILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         9455 a         3774 c         4922 g         9856 t
ORIGIN      
        1 tgatttttat aaatcccttg ttaagggatt tatattaata agctttttta taacattgaa
       61 tttcaatttt tctagctact ggaatagcct gagtatttgg tgtagcaggt attccataag
      121 aaattttact ttctaaaaaa tttccaacct gtaaatcttt aaaagttcca tctttatctg
      181 ttccaaaaat accacaatca tccatttcta tttcggtatt tggtagaact tttatagcca
      241 tttgtccgcc ataaatagag tcaataagca aggttttatt gttatcataa atttgtgcaa
      301 tagtaccttc aagttttaga ctatctgcaa aaagcattga gctagctaaa agtgctgatg
      361 tgaataaaat actttttttc ataattattt ctccttaatg taaagtgatg acattataaa
      421 atttttaagt gaagtgaatg tgaaattaaa aatttttgac tttcataaaa ttaatacgct
      481 ttaattattt tcaaaaaaag cttgtggaaa aagatataaa ccttcattaa aaggagcttt
      541 gattagagta tattgaagat gaaatggggt aatggagtta atagattgtt ctaaaaaaag
      601 tagtgcagta aaaagcatct ttatctgtac ttatgataaa ttttctgcct aaatgttcca
      661 aagctttagc aactattttt tgtttggttt tttcatcaaa ttttaatctt ttaatagcaa
      721 ttttatgact cagttttaaa aaatcatcca tagagcttaa gataacttgg tctttagcat
      781 ttttgtcatc atctgttgta gcatgtatga gtatagttgg agaagtttta actagcatag
      841 cgatatgaga ataagggctt tgacttaaat tttctattaa aaaactttca cttcctattc
      901 ctgcacgaaa gacaagatca cctatttcaa gaaaaggtag atagggtttt ttgatgattt
      961 gatttgaagg attggaattt ataaagaaac ccaaaattcc aatcaataaa aataaaatta
     1021 agaaaaaata taaaatttta tttaagtaaa acaagctatt ttctatcttt tttagcaaga
     1081 aaaacattgc tgctttgatt attatcattg ttaaataaca ctaaaactct gattttagca
     1141 gaatctttat tgattgtttt ttcttcaatt tgaatatttt taacaccacc cattcttttt
     1201 gctttggctg cattttcagc aacaacttga gtgattttat cactaacaaa tgttttttct
     1261 tcatcgcttt tagcttcgct aagatcaatg taactcataa cagatttagt attaccactg
     1321 taaagatctt ttgtaaaatt tttagctaaa tcttcaggat ttgaagaacc gcaagccact
     1381 aaaaaaaggc aactaaagcc aagaaagaaa gtttaaaaaa tttcattttt ttcttttgat
     1441 agtataaatt aaaatattca taattatagc aaaataattc aaaattattt ttttattctt
     1501 gtttataatg gttacattag aaaatatatt ttttttaaaa agctataaat ttaaacacat
     1561 ataagttgga gttaaaatat cctattttat tatcgaataa aaatgataca aaaggatagg
     1621 atatggaaat ttttttagct ttattgggtt ttttctcgtt aggattgata gtttggcttt
     1681 tgctaaaaga ttatactact ccagcactag cttttataag tgtaagtatt agtgtagctt
     1741 gtattttact tattcttgaa cggcttggtt ttggcgtggg tgtagcttta ggggttaaag
     1801 gaggtgtttt tgatattaaa acattggttg tttttattaa agatggagtc aaaagcgtaa
     1861 cggatacggc agctttgttt gttttttcta tactcttttt tagtgtttta aatgcaagtg
     1921 gtttttttac taaaatttta aatgcatttt tatcaaaaat gaaagctaat gtatatcaag
     1981 tttgcattct tactgttttt attgctgctg ctgtgcattt agatggttca ggtgcttcta
     2041 cttttcttat tgtaatacct gcattattac ctatttatga gcgtttaggt ataagaaaga
     2101 cttcaatgtt attgattatt acttcggcta tgggggttat gaatgttatt ccttggggtg
     2161 gtcctacttt aagagcggct actaatatag gaatggatgc aaatttgctt tggcaccata
     2221 ttatacctat tcagattgta ggtttggtat tatcccttct tttggcaatt tggattgcta
     2281 agatagaaat aaaaagaggt gcaggcgcag gtaacttgtc tggaataaat ttaaatatag
     2341 aaaaaagcga acaccataat gaaaaatggt tttggttaaa tttacttgta gctattggag
     2401 ttattgggct tttaattagc ggtattattc ctagttatat ttgctttatg ataggacttg
     2461 caataatttt accgcttaat tatcctaatt taaaaacagc taaaaaagtt ttagatcgtg
     2521 caagtggtgg tgcaatgctt atgtatatta ctttaattgg tgctgggata ttaataggcg
     2581 tatttgataa aagtggtatt atggagaaaa tgggtgtttt gattttaaat tttgttccag
     2641 attatttagg cgcttatatt cctttgatgg tagggatatt ggctgttcca atggcaatta
     2701 ttttttgtac agattcttat ttttatggag tgatgcctat agttttgagt gtaactaagg
     2761 cttttggcgc tgaacctttg actatagcta ttatcatggt gatagcaaga aattgtgcga
     2821 catttatttc tcctgttgtg cctgcaactt tgctaggttg tggtttagca gaggttaata
     2881 ttaaagatca tatcaaaaga agcttttttt atatatgggg tataagtatt atttgcttga
     2941 tttttgctga ggtagctggg ataatataat taaaataaaa gaacttttga tttttcaatg
     3001 attggttcat tgttttatga tatttttgag tcaaaaattt ataaaaatat aagcgttttt
     3061 ttgtattatt ttattttgct ttagagaaaa attataaatt taaacttata agaatatttt
     3121 ttaagttgaa agtaaaattt taaaacggag aaatgatgta caaaaaacaa aatttaccag
     3181 aacttacctt aaggggtttg gttttgggaa gtattttaac tattattttt acagcttcaa
     3241 atgtatattt agggttaaaa gtgggactta ctttttcatc atcaattcca gctgtggtca
     3301 tctccatggc ggttttgagt ctttttaaga cttcaaatat tttagaaaat aatatggttc
     3361 aaactcaagc ttcagcagca ggaactttat catcagttat ttttgttatc ccagggcttt
     3421 ttatgtgtgg gtattggagt gaatttccac tttggcaaac ttttatgata tgtctttgtg
     3481 gtggcggact tggagtgctt tttactatac cattaagaag gactatggtg gttgaaagca
     3541 agcttgctta tcctgaaggt agagctgcag ctgaaatttt aaaagtagcc aataaagatc
     3601 agagtagtaa aaaaggaaaa caaggcatta aagaaatagc attaggctct tttatagctg
     3661 ctatttttag tttgttaagc aatggtttta aactcgctgc aagtgagagt aattttgctt
     3721 ttatttggaa taaaatggct tttggttttt ctatgggata ttctttggca cttttagggg
     3781 caggttattt agttggttta gcaggtgcta tagctctttt tgtaggtatg tttttagctt
     3841 ggggtatttt tactccctat ctttcaaatt ttgaattcga tagtgcaaaa aatgccgtag
     3901 atttagcttc tagtgtatgg agttctaaag taaggcttat aggaacagga gctattgcta
     3961 tagcagcgct ttggacttta atagaacttt taaaacccgt tattgaaggt attaaagaaa
     4021 ttgttaaaaa tgttaaaatt actaatcaag aaaaaaatga aagaacaaat atagaccttt
     4081 ctttaaaaag tatttttata ctttttgttt taatggttgt gggtttattt attacttttt
     4141 atagttttgt tgaagatgct aacttaagta tttattatca aatgctattt tcatttgttg
     4201 gaactttagt ttctgtttta ataggttttt ttgttgcagc agcttgcgga tatatggcag
     4261 gacttgtagg atcttcttct agtcctattt ctggaatcgg acttattggt gttattattt
     4321 cttctattgt ttttttggtt ttaggtgtgg aactttttca agatcctatg ctttctaaat
     4381 ttgcagtagc attagctatt tttactacta gtgttatttt agctacagct gctatttcga
     4441 atgataattt acaagattta aagacaggat atttagtcgg agctactcct tggaaacaac
     4501 aagttgcttt acttgtaggc tgtgtttttg gtgctttggc tatagttcct gttttaaatt
     4561 tgctttatca agcctatggt tttgtcggag caatgccaag agaaggtatg gatgcttcat
     4621 cagctttagc agcaccgcaa gcaaatttaa tgagtactat cgcccaagga atttttcatc
     4681 acaatataga gtggggttat atggcttttg gtgtatttgt aggaatttta atgattatta
     4741 tagataaaat tttaagaaga acacagaaaa tgtctttgcc gcctttagcc gttggaatag
     4801 gtatttacct tccccctgct gtaaatatac ctttagttat aggcggaatt ttaaaatata
     4861 ttgtaatgca acacttgact aaaaaatatg caaaaaattc tcataaagaa gaaaaacttg
     4921 caagttgtga gcaaagaggc acgctttttg cttcagggct tatagtgggt gaaagtattt
     4981 ttggggtaat tatcgcagga attactgtat tttcagtaag tatgggtggt agtgaaaatc
     5041 ctttagcttt aaatttagca aattttcatg atagtgagct tttcgcactt atcttttttg
     5101 tgggagttgt attatatttc attaagcgta ttgttaaaaa agatgcttaa tttttggggt
     5161 taaaacccta tttaatccat tctgatataa tttttctttt gcaattatca ttcaaggatt
     5221 aaatatggaa aatttatatg ctttaatact tggaattata gaaggtctga ctgagttttt
     5281 acctgtttct tcaacaggac atatgatttt aggtacgact attttaggta tcgatataga
     5341 tgagttttgg aaaagctttt tgattatcat ccagcttggt tctattttgg cggtaatttt
     5401 tgtattttgg cgtaaattgt ttcaagggct tgatatttgg ttaaaacttg cagtgggatt
     5461 ttttcctacc ggagttatag ggctttttgt ggcaaaatac ttaaatgctt tatttaatgg
     5521 ttgggttgtg gttggaatgc tcatttttgg tggtgttgtg cttattctta tagaacttgc
     5581 gcacaaaaat aaacaatatc gtatcaattc tttagaagaa ataagcttta aacaagcttt
     5641 ttgtataggt atttttcaat ctttagccat gattcctggc acttcaagga gtggagcaag
     5701 tattattggt gggcttttgt taggatttaa tagaaaagtg gctgctgagt ttagtttttt
     5761 gcttgccatt ccaacgatga ttatcgctac agcttatagc atttataaag agcctgagct
     5821 tcttggcaat gcaaattctt taattccttt aggcataggt tttatcactg cttttattgt
     5881 tgcagtttta gttataaaat ttttcttaaa atttatttct aaattcgact ttatcccttt
     5941 tggaatttat cgtattattt taggatttgt tttcttttat ttgtattata gtgggatttt
     6001 aaatgctgga agtgaattta agctataaat aaatattaaa tttattctaa gatttttttt
     6061 aaaaataagc tgaatttcaa aaataattaa gtcttagaaa gttaaaatta gaactttata
     6121 aacactcaca gggtaagtga gcgacaaagg gttaaaaata tggaaaaaga agttattgcg
     6181 tatttggaca atgagacgat aattgactct caaagtgtga aaaatacaaa tttaaaagaa
     6241 atttattttg ataattctaa agaaagttta gaagtgatac gccattcttg tgcgcatttg
     6301 atggcacagg cgattaagag cttgtatcct gaggctaaat ttttcgttgg tcctgttata
     6361 gaagatggat tttattatga ttttcgtgta gaaagtaaga ttggcgaaga agatttagta
     6421 aaaattgaaa aaaagatgaa agaacttgct gaagcaaaga ttgaaatttc aaaatatgaa
     6481 atcacaaaaa acgaagcttt ggctaaattt caaaatgatg atttaaaaca agaagtttta
     6541 ttgcgtattc ctgatggagc tgtaagtatt tataaacaag gtgaatttga agatttgtgt
     6601 cgtggtcctc atgtgccaaa tacgaaattt ttacgctttt ttaaactcac tcgtgttgca
     6661 ggagcgtatt tgggtggcga tgaaaaaaga gaaatgctta ctcgaattta tgggactgct
     6721 tttgcagata aggaaagttt aaaagagtat ttaaccatta ttgaagaagc taaaaaacgc
     6781 gatcatagaa agcttggaac agagcttaaa ctttttactt ttgatgatga gatcggagga
     6841 ggccttccta tctggttaag taatggtgca agacttagat ctaaacttga acatatgctt
     6901 tataaaattc atcgtttgcg tggttatgag cctgtgcgtg ggcctgagct tttaaaagca
     6961 gatgcatgga aaatcagtgg gcattatgca aactataaag aaaatatgta ttttacacaa
     7021 attgatgaac aagagtatgg tattaagcct atgaactgtg tgggacatat taaaatttat
     7081 caaagtgatg taagaagcta tcgtgatttg cctttgaaat tttttgaata cggcgtagtg
     7141 catcgtcatg aaaaaagtgg ggttttgcac ggacttttta gagtgagaga attcactcaa
     7201 gatgatgcac atattttttg tatgccaagt cagattaaag agcaggtttt agaaatttta
     7261 gcttttgtgg ataatttgat gaaattattt gattttagct atgaaatgga aatttcaact
     7321 aaacctgaaa aagccatagg tgatgatgaa atttgggaaa tagcgactaa ggctttaaaa
     7381 gaagctttag atgaacaagg tttaaaatac ggtattgatg aaggtggcgg ggctttttat
     7441 gggccaaaga ttgatattaa aatcaccgat gctttaaaaa gaaagtggca atgtggaacc
     7501 atacaagtag attttaacct gccaagtcgt tttaaacttg aatacactga tagtgataat
     7561 gaaaaaaaac aacctgtaat gttgcatcgt gcgattttag gttcttttga aagatttata
     7621 ggaattttaa ccgagcattg tgcgggtgag tttccgtttt ttatcgcacc aactgcggtg
     7681 ggtatagtgc caataggcga agcacatatt gcttacgcaa aagaaattca aaaagaatta
     7741 ttagagctta atatcgatag cgaggtgtat gaaaaaaatg agagcttaag taaaaaaatt
     7801 cgtatcgctg aaaagcaaaa attacctatg attttagttt taggcgatga tgaggtggca
     7861 aagcgtagcg ttgctttaag agatagaaga gctaaagaac aaaaaaatct tagcttggac
     7921 gaatttatta aattagttaa ggagaaaatg agtgaggtac acttttgagt aaagaaaaag
     7981 aagtattgct caatgaagaa ataagagcgg atgaaatcag atgtgttggc gatgatggca
     8041 aagtttatgg tattatcagt agtgatgaag ctttagaaat tgcaaatcgt ttaggacttg
     8101 atcttgtaat gatagctgca gatgctaagc cacctgtttg caagatcatg gactatggta
     8161 aattccgtta tcaacaagag aaaaaacaaa aagaagcaaa gaaaaaacaa aaagtgattg
     8221 atataaaaga aatcaaactt tctgtaaaaa ttgctcaaaa tgatattaat tacaaggtaa
     8281 aacatgcttt agaattttta gaacaaggta agcatgtgag atttcgtgtg ttcttaaaag
     8341 gacgtgaaat ggcaactcct gaagcaggtg tagctttgct tgaaaaaatt tggactatga
     8401 tagaaaatga agctaatcgt gacaaagagc caaattttga aggtcgttat gtaaatatgc
     8461 ttgtaactcc aaaaaaagct taatccactt ttgtggataa ggcttttaaa ggttttaaat
     8521 tttgaaagaa aatccttctt ttttaaaaga gcaaattata acttatcttg gaaataaaag
     8581 agcactttta agttttttaa ataatggctt taaggtagct aaaaaagaac ttggtaaaga
     8641 taaatttagt ttttgtgata tatttagtgg ctcaggtgtt gtaagtcgtt ttgcaaaagc
     8701 acactcaaat tatattttag ccaatgattt agaagattat tcaaaactca tcaatgagtg
     8761 ttatcttgct aataaagaca aagatttact tcaaaatata aaaaagtatt ataaaaattt
     8821 aatccaaaat ttagattttc aaaaaggttt tatcagtgag ctttatgctc caaaagatga
     8881 tgatgatatt aaaaaaaatg aaagggtttt ttatactttt aaaaatgctt tatatcttga
     8941 tactataagg caaaaaatcg aaaatgaaat tccaaaagaa ttgaggcatt tctttatagc
     9001 tcctttgatt tatgaagcca gtgttcattc aaatactagc ggagttttta aaggttttta
     9061 taagggtaag gatggcatcg gaaaatttgg tggcgaagga caaaatgcac ttaaacgcat
     9121 taaaggagaa atagagctta aaatgcctat tttttcaaat ttttcttgtg aatttgaagt
     9181 gatgcaaaag gatgcaaaca tacttgcaaa agaacttgat ttttttgatg tagtgtatct
     9241 tgacccccct tataatcagc acccttatag ttctaattat tttatgctaa atttaattgc
     9301 aaattataaa aaacctgaag aaatttctaa aatcagtggc attccaaagg attggaaccg
     9361 cagtactttt aataagtcaa aatttgccca agatgcttta tttgaactta ttaatgattt
     9421 aaaagcaaga gtgattttac tttcttataa ttgtgaaggt tttgtaaaaa aagaaatttt
     9481 tttaaagcgc ttaagcactc ttggaaaatg ccggatttta gagcaaaaat ataatacttt
     9541 tagagcttct cgcaatctta aaaatcgcaa catccatctt catgagcaac tttatatttt
     9601 agttaaaaat tagtttttcg tgctaaaatt gcacttaaaa atgaggaggg atttatgaaa
     9661 ctaaaattat ctttttgtgc attaatggca tttggttttt ctaactatct ttttgcttca
     9721 gctattgatc caaagttatt ttcaagaata tcttgatttt gccagtaata aaggcaaatt
     9781 tcaagtaggt caaattggct tttaaatttt agcaaaaaat cctagtcaaa atatctcttt
     9841 taatgtgcct atgattgatt tttctacttc aaatcgtgga ggaaaattcc aaggagaatt
     9901 taccaatata ggacaatctt atatagtcag cgcttctcat atgagtacaa gtttaaatac
     9961 tgggaagtaa ataaaggcta tgtgaaacaa ggtagtgttt tacactttgg aggggtagca
    10021 aatagaatcg taagctcaag tgataatttt acttataaaa aagaaaatgt ggattttgct
    10081 gttttaaaaa tgagtaagat tagtctcaat aaaagtgcaa atttgagtaa agatttaaat
    10141 cttattgaaa aaaattctgg cgatggtgga gatatttatg aatacaagga tccattttgg
    10201 gatagttgtc aaagtggaaa atgtgattat tcaaaaggta aaggcaagct ttttgatagt
    10261 tcgcgttatg agtactttgc aagagaggga agtggtattg tagctttagg ttttgaagat
    10321 acaaataaag tacccattaa gatttttgat tctaatgaaa tcaatttagg aggttttgtc
    10381 agtttaactc ctaaaaatac tgaagataag cgttttaagt tgcaatttct taattatacc
    10441 aatgataaaa gaaattcttt tacaagttct ttaatatcct gggattctgg aagtggagtg
    10501 tttatgataa gatggataaa aatggtattt agtgggtgtg gtaagtacga gtaattgtaa
    10561 tgtccatttt actatggata tacttgttta caggttgatt atgctttgat caatcaagta
    10621 aagatcaatg aattttaaaa tgctcataaa gtagccatag gatctggaac ttatacactt
    10681 agtagcgatg gtttggtgaa agatggtaaa aaaatagaaa atgtaagttt gatttctaag
    10741 actaatgtgg gttatgtaag ctataaaaat tcttttgatg ataaaaataa ttgtgataag
    10801 agaattgaag aaatgcaaaa tagcaaggat ttgtattttt ctcaaaatgg aagtataaat
    10861 ttaaatagcg atgtggattt aggcgctagt gttttaaatt tgataaaaat tcaaattggc
    10921 aaataacagg cgataaatgg cttatacatg gcggaattta tgctgataag ggttcaaggt
    10981 agaatataat gttaaaacca aaaaagatga ttttctttat aaaatgggtg aaggagagct
    11041 tgttgtcaaa agtcaaagtg tggatacagg acttagaatg ggtgaggacc aaggtaagtc
    11101 ttgagggtga aggttgaagt tttggcgaaa tttatatgaa tggtggaact ttggatctat
    11161 cgggcttaac attaaaattt gatcaaatta aagctaactc taataatgtt tttatcacaa
    11221 gctctaaagc aggggcaaat ttaaatttag aaaacaagca aaattatctt tatcatggca
    11281 atatttttca gatgaggcca taacaattag tgctaataca gataaagctt tgatttttga
    11341 tggtaatatt tacaataaag aaggtgtttt taggacagaa aatgccaagt taaattttca
    11401 aggacatgct agaatacacg cttatgtaag caaagaacaa gctaaaaaac ttcaagaaca
    11461 tggtttaagt gctttaacta agcctgtaag ttttacacaa gaagattggg aagatagggt
    11521 ttttgtttta aaagagctta atttagaaaa aaagcgagtt ttatttaggg cgtaatgtaa
    11581 gcttaaaagt agaaaacctt aatgctaaaa attccaaaat agagcttgga agtaaaaatt
    11641 tgtggatcga tgaaaaagat ggggaaaata ttattgataa gactgatgat tattcttatg
    11701 gagatgttgt ataaacagga gttggcaaag aaatggcttt tgagcaaaag ctttaaaata
    11761 cccaaaatgc taagatagaa aaggtttatt ttagtgtaaa tttaaatctt gatcattctg
    11821 atgttacttt gcaaaacaca ttttttagtg gtaatatcaa aggtatcaat gatacgcaaa
    11881 aaaaaatctt gcgattaaag attctttgct tgagtctcat atataaatga gcaatcttca
    11941 agtagaaaaa agtgctattt ataggaaagt tgatgcaaaa aaattaagtg caaataatac
    12001 aatatttaaa atcaatgcgg attttgaaaa ttctaaagca gattatatta attctaagga
    12061 aagcacacaa ggagtaaata atactttagt attaattttt cttaataatc ctagtaaaaa
    12121 gcgggtttaa atatcttact agctcattta aaagatgaaa ataaacattt aacaaaggaa
    12181 ttttttacta tgccaaatgt gagcaaggtt ttagtacgta taccccaaat gttgtttttt
    12241 ctcataatga agaaaatttt gcccagagtg gaatttagaa aaaattgatt ctaagattaa
    12301 agatgaatat ttttttacta atgataatac tcaagctatt gtaaaaacta aatctatact
    12361 tgctcaagct attttaggct ccatgatagg agtgggataa tatgcataaa agaatggggg
    12421 aattacgcaa taatccttat gaaagtggtg tatggttaag aacttttgga tggggtacga
    12481 gtgatgagta taatagtgga aaatactttg aaattcaaag cggacatgat aaattaaacg
    12541 agtattcgaa tttcgagctt tacagtggag taaggttttt atagtgattt tgttttagat
    12601 atatttatta tcaaaatgaa ataaatgcaa attttattcc aggaaatcaa ggtagattag
    12661 atgataatga tggttcgcat aatattatct taagtgctga gttaggttat agaaaagctt
    12721 atgataaatt ttatcttgag ccgagtttgg aatttatcag tggttatgta ggagctatgg
    12781 atctaaaagg agatattgct agtttaaaac gattttctta tattccttta gtcgtaaaaa
    12841 cagcattttt cataggaagt caaaattaaa atttaaattt tagaacagga cttggtttgt
    12901 atgcggatcc gattaaagca ggagatcaaa tcttggagga tcaagcaagt cagagaagat
    12961 atgaaggaaa aaagatcaaa gaatgtttat aaatttagga aatgattata agcttaacga
    13021 taaaacacgc tttagttttg aatttgaaaa gacatttttt ggcgatttaa atgtagattg
    13081 gagtgcaaat gctaatttaa gatatagttt ttaaataaaa aataatttaa aaattgtatt
    13141 tttattttaa gcttttttgt ttataatact tgcttttaca tttaaaggat aaagatgaaa
    13201 ataaaagttg ggattttagg agcgagtggt tatgcgggaa atgaacttgt tcgcattttg
    13261 cttaatcatc ccaaggttga aatttcttat ttgggttcga gttctagcgt ggggcaaaat
    13321 tatcaagatc tttatcctaa caccccttta aatttatgtt ttgaaaataa aaatttagat
    13381 gaacttgaac ttgatctttt gtttttggct actccgcatg aatttagtgc taaactttta
    13441 aatgagaatt tattaaaaaa gatgaaaatc attgatttaa gtgcggattt tcgtcttaaa
    13501 aatcctaaag attatgagct ttggtataaa ttcactcatc ctaatcaaga gcttttgcaa
    13561 aatgcggttt atggactttg tgagctttat aaagaagaga taaaaaaagc aagtttagtg
    13621 gcaaatccag gttgttatac cacttgttct atcttaagtc tttatccgct ttttaaagaa
    13681 aagatcattg attttagctc agttattatt gatgcaaaaa gtggagtaag tggagcagga
    13741 agaagtgcaa aggtggaaaa tcttttttgt gaagttaatg aaaatatcaa agcttataat
    13801 ttagctttgc atcgccatac tcctgaaatt gaagagcatt taagctatgc agccaaaaag
    13861 aaaatcattc tacaatttac ccctcatctt gtgtctatgc aaagaggaat tttaatcagt
    13921 gcttatgcaa atttaaaaga ggatttgcaa gaacaagata tacgcgatat ttatacaaaa
    13981 tactatcaaa acaataaatt cataaggctt ttaccgccgc agtcgcttcc gcagactcgg
    14041 tgggttaaat caagcaattt tgcggatata aattttagtg tagatcaacg cacaaagcgt
    14101 gttattgtgc ttggtgctat tgataattta atcaaaggtg cagcaggaca agctgttcaa
    14161 aatatgaatt taatgtttga ttttgatgaa gatgaaggac ttaaattctt tgcaaatttg
    14221 taaaggataa aaatgttaat acgagctatg caaaaaagcg attatgaagc cgtttataag
    14281 ctttggtgtg agataaaagg ctttgggata agaagcattg atgatagcaa agaaaatata
    14341 gaaaattttt tagatagaaa cccaaatctt agcgttgtag cagtggttga tgaagaaatt
    14401 gtaggaagta tactttgcgg gcatgatgga cgcataggag gattttatca tgtatgtgta
    14461 cataaagatc atagaaaaaa gggtatagcg cacgagatga ctaaattttg tcttgaggct
    14521 ttaaaagctc aaaagattaa taaaatcgcc ttaatcgctt ttaaaaacaa tgatttaggc
    14581 aatgagtttt ggaaacatta tggttttact ttaagagagg atgcgaatta ttacgatctt
    14641 tctttaaatg agtataatca aactagcttt aatgcttaag gaatgatcat gcaaaaatat
    14701 ttagaaaaag ctaatgtctt aatcgaagct ttgccttata tacgcaaatt taattctaag
    14761 attatactta taaaatacgg cggatcagct atggaaaatg aagagctaaa gcattgtgtg
    14821 atgcaagata tagctctttt aaaactcgtg ggtttaaagc ctattattgt acatggtggg
    14881 ggaaaagata tttctgctat gtgtgaaaaa ttaggcgtaa agagtgagtt taaaaacggt
    14941 cttagggtta gtgataaagt cactattgaa gtagccagca tggttttaaa tcatatcaat
    15001 aaaaatttag tccatagttt gcaaaattta ggagttaaag ccatagggct ttgtggtaaa
    15061 gatggcgcgc ttttagaatg tgtgaaaaaa gatgaaaatt tagcttttgt tggcacgata
    15121 caaaaggtaa attcgaaaat tttagaagag cttttagaga aagatttttt acctatcatt
    15181 gctcctattg gcatggatga ggattttaat acttataata ttaacgctga tgacgtagct
    15241 tgtgcgatcg ccaaggcttt aagggctgaa aaacttgctt ttttaaccga tactgcagga
    15301 ctttatgagg attttagtga taaaaattct ttgatttcta aaattagcct tgaacaagct
    15361 aaaattttag ctcctaaaat agaaggtggt atgcatgtaa aattaaaatc ttgcattgat
    15421 gcttgtgaaa atggagtcaa aaaggtgcat attttagatg gacgcgtgaa gcattcttta
    15481 ttgcttgagt tttttactga tgaaggtata ggcactttgg tgggttaaag gatgaaaatg
    15541 gattataaag aacaaagtca tattgtccct acttataagc gttttgatat agttttagaa
    15601 aaagggcagg gggtttatct ttttgatgat aaggctaaaa aatatcttga tttttcaagt
    15661 ggtataggtg tttgtgcttt aggatataat catgctaaat ttaatgctaa aatcaaagct
    15721 caagtggata aacttttaca tactagcaat ttatattata atgaaaacat agctgctgca
    15781 gctaaaaatt tagccaaagc tagtgcttta gagcgtgttt tttttacaaa ttctggtaca
    15841 gaaagtatag aaggagcgat gaaaacagct agaaaatacg cttttaacaa aggcattaag
    15901 agtggacaat ttatcgcttt taagcattct tttcatgggc gtactttagg ggctttatcg
    15961 cttactgcta atgaaaaata tcaaaagcct tttaaacctt taatttcagg ggttaaattt
    16021 gcaaaatata atgatatttc aagcgttgaa aaactggtga atgaaaaaac ttgtgccatt
    16081 atcttagaaa gcgtgcaagg agaaggtggg ataaatcctg caaataaaga tttttacaaa
    16141 gccttaagaa agctttgcga tgaaaaagat atattattaa tcgctgatga aattcaatgt
    16201 ggtatgggta gaagtggaaa attttttgcc tatgagcacg cacaaatttt gcctgatatc
    16261 atgacttcag cgaaggcctt gggttgtggg cttagtgtgg gtgcttttgt aataaatcaa
    16321 aaggtagcaa gcaattcttt agaagcgggc gatcatggta gcacttatgg gggaaatcct
    16381 ttggtttgtg caggagtgaa tacagttttt gaaattttta aagaagaaaa aattttagaa
    16441 aatgtcaata aactcacgcc ttatttagag caaagtttag atgagttgat caaagaattt
    16501 gatttttgta aaaaacgcaa aggtttaggg tttatgcaag ggctgagtct tgataaaagt
    16561 gtaaaagtat tcaaggtcat tcaaaaatgc caagaaaatg cacttttact gataagttgt
    16621 ggagagaatg atttgagatt tttacctcct ttaattttgc aaaaagaaca tattgatgaa
    16681 atgagcgaaa agttaagaaa ggctctaaag agtttttaat aaattttgta aaaaagttta
    16741 ttcttttcca tctactatag gcacaaataa acattcttct aaaatttctt tttgtaaatt
    16801 tgtgccattt tttctaaggc gtgtgatgaa ttgtttgcca ttgtgtaaaa taggagcgac
    16861 taaaatcccg tcatcgctta attgatcgag taaaatttca ggaatttgtg tcgcataagc
    16921 agaaaataaa atcctatcat aaggagcata atttttccag ccattttgcc catcatcaaa
    16981 ttttacattg atattaaaaa gttctaattc tctgaaagtt tgagcggctt ttttggctaa
    17041 attttctatg cgttctatgg taaaaacacg ccttatgact ttgcttaaaa tcgcagcttg
    17101 atagccactt ccacaaccta tctctaaaat actatcagca tttttaaaat ctaaggccat
    17161 agtcatttta gctacagtta aaggtgaact aatccattga gaatttgcca aaggcaaagc
    17221 atcaaggcga taagcatggg cttttaaagg agaaaaaatt tcacgcggaa tttgacaaaa
    17281 agcattaaaa agttcttcat tgataaaaac tttttgtgca atttcttcag ccatattttg
    17341 acatcttttt tgttcaaatg cgttcattac ttctcctata aatttaaata aaaattgtaa
    17401 ctaaaaaagt tgaaatagag ttaaacttag ctatacttaa ataaaaagga aaaaaatgct
    17461 tataaaattt aaaaatcata gtcccaaact aggtcaaaat gtttttgttg cagagggcgc
    17521 taaaatcata ggagaaatag aaataggaga tgaaagtggt atttggttta attgtgtttt
    17581 aagagccgat gttaatttta taaaaattgg caaaagaacc aatattcaag atcttagcac
    17641 ggtgcatgtt tggcataggg aatttgatga aaaaggaaag ttaaaagacg ctggttttcc
    17701 tacgataata ggagatgatg taaccatagg acataattgc gttatccatg cttgtgtgat
    17761 aaaaaatcgt gttttaatcg gaatgaatgc tgttatcatg gacaatgctt tgatagaaga
    17821 agatagcata gtgggtgctg gaagcgttgt aacaaagggt aaaaaatttc cgccacgctc
    17881 tttgatactt ggaaatcctg caaaatttgt gcgtgaatta aacgatgaag aaataagctt
    17941 tctaaaacaa tccgctttaa attatgtgga ttttaaaaac gagtttttaa aagatcttca
    18001 gtgatatttt gaagtttagg tgagagtttt acttcaaatt tcacaaaacg atcaagatct
    18061 aaaaaactct catcgagttt tgaaatttgc tcttttgtat aatcttgaat agtatttaaa
    18121 gatgactttt taagaagtct tttttctttg tagactaatt ctaaaagttc tttgcgttct
    18181 aaattttcat cttgatttgg gttttcgtca aaaacataaa gctcatcaaa aaggattttt
    18241 tgcgtgtttt tatcataaac cctaaaaagc tttttaaaat gaggtagggt tgatttttcg
    18301 ttattttcgc tgattttgat tttaggtttt atgccttgat cttctaaggc tgcgagttta
    18361 taaacgcaac taaaaatagg gtcacttgaa gcagtgatca atctttcacc tacaccaaag
    18421 atatcaatag gtgcattttg ttctttgagt tttttaatac tccattcatc aagggcgtta
    18481 gaaactatga ttttacattt ttgaagtcct gcttgatcaa gttcttgtct gattttcaaa
    18541 ctcaacttaa gtaaatttcc agaatctatt ctcacaccgc cttcttggat accaaattct
    18601 ttaaaaactt taatcgcatt tttaagtccg ctatttagac aatcataagt atcaatcaaa
    18661 aaaacaggat tttttggata aattttcaca taagctttaa aagcttcaag ttcattttca
    18721 aacatttgca cccaagaatg tgccatagtt ccattgatag ggatattata aatttttcct
    18781 gctaaagtac aagcacttcc tatgcaacct cctataaaag ctgctcttgc tccttttaag
    18841 gctgcttcac ttccttgtgc tctgcgtgaa ccaaattcta aaattttact gtctttagct
    18901 gcacgcacga tacgattggt tttggtagca ataaggcttt ggtggtttaa acttaaaagt
    18961 aaaaaagttt ctaaaagctg tgcttctatg gttgtagctt taatacatag caaaggttcg
    19021 tttggaaaaa tcacttctcc ttcacgcata gcataaattt cacccttaaa tttaaagtta
    19081 gctaaaaaat ctaaaaattc tgtatcaaaa ataccttgtt ttcttaaaaa ttctatatct
    19141 tctgcatcaa aactcaaatt ttcaacaaag tctaaaatat cttcaagacc tgcaaaaata
    19201 gcaaaagatc ctgaatctgg aatttttcta aaaaatatat caaaataaca aatttgatct
    19261 tttttattgt ttttgaaata gccttgagac attgtaaatt cataaaaatc acaaagcaag
    19321 gctaaagaag ttttagaagt catcaaagct tatactaccc ttagaataat tcgttacttt
    19381 actttcaaag aaattgctct tttgatcgtt aaattttgaa aaatcatcta cccatttaat
    19441 aggatgtttt gcattgtata acttatctaa attgatcgcg cttaatcttt gatctacaag
    19501 ataatggata tattcttcta tgatatcatc agtaaagccc atgatttgat tttgagtgat
    19561 gtatttaccc catttgatct caagatctcc agctttttta aacatatcat aaattttatt
    19621 gatattttca tcatggaaca aatcaggtct ttctttgcgt actgaattga tcatattttg
    19681 aaataataaa agatgtgtga tttcatctct ttggataaag cggatcattt gtgctgaacc
    19741 tagcattttt cctgcacgtg caagtgcgta aatggcagta aaaccactat aaaaatatac
    19801 tccttctaaa atttgatttg ccaccatagc caaaagaagt ttattatcat ctacatcgcc
    19861 tgctaattct tcataaatgc ttgaaataaa gtcatttttt tcacgcaaag tttcatcatg
    19921 cttttccatt tcataaatca aatctgtatt atcgcaaatc gcttctacca taacagcgta
    19981 agattttgaa tggtttgcct cttcataagc ttggcgtgct aaaactgcat tgatttcagg
    20041 agctgtgatg taagggttga tattgtctgc taaattattg gtttgaaaac tatccataga
    20101 aataagctga ctccaaacca aatcatacat tcttttttca cctgcagtta aattacagcg
    20161 ataatcaagt gcatctttag ttgtatccac ttcttttgga aaccaagtat ttgcctccat
    20221 taaatcccaa agttttaaag cccaagtata ttttgcctta gtaaaattta aaattccatg
    20281 tgggttacca tcaaaaactt tacgatctcc taaggtttcg tttgaacttg gattgtaaat
    20341 tctttttctt tgcattttta acctttcttt atgctttagt agctatacaa ctttgagtta
    20401 aaatatcgtg taaatttaaa cgatcttttc ttacaaaact gacaaataaa ccaaagagta
    20461 agccaaaact tataataaat atcacatatc ttagtaaaat tctaagaaaa cttagtttct
    20521 ttcccgtttt tatatcaata agatataaat catatgcttt aagacctggg ctttgtgcct
    20581 tttttgttaa aaaaatagct tgaatcaaac caaataaaaa agtacataaa gttgtgataa
    20641 aatggttgtt taaaaaagat tctttagagc ctaatagaaa ataaaataaa tacaaaatag
    20701 gaacataaat aagaaaaata tctataagca aagctctaaa tcttagccat ctagagctaa
    20761 tttttgcttt agttttcatt taatttccac ggcttcctgg ttttatagct ttactccctt
    20821 ttttacaaag tggacaattt gtttcatcat aaatttcaaa ttcaaaattt cctagagtaa
    20881 agagtggtaa attttcaggt aatttcgcat tatcttttct tggagatttt aaattttcta
    20941 ctgcacaaaa accacgattt gccaatgctg caaaacctac aacaatgcca cctaaacttt
    21001 caatgatttt tgcactctct aaagcactac cacctgtagt aatgatatct tcacaaatta
    21061 taaatttttc accctttttc acctcaaaac cacgtcttaa agtcatttct ttatttactc
    21121 tttcagtgaa gataaaacgt ttactacaag ctctcgcaag ctcataacct gctaaaattc
    21181 cacctaaagc aggagaacaa atgctatcaa attctatctt atagcttgca ataatctttg
    21241 caagttcgtc acaaagtttt gctgctaatt ttggattctc taaaactttt gcactttgaa
    21301 gataaaattg cgaatgttta cctgaactta gtaaaaaatg gtcttctaaa taagcaccac
    21361 aatctttata aatttgccct aaattcatcg ttaaaccttt aaaagttcac tttctttact
    21421 ttttacactc tcatcaattt ttattgtgta ggcgtcggta agtttttgca cttcatcata
    21481 agcttttttt gcttcatctt cgcttattgc cttatctttt tctagttttt taactgcatc
    21541 gttggcatct ttgcgtatat ttcttataga aacttttgcc ttttcaccca tagctttagc
    21601 ttgctttacg ttttcttctc tttgctctct agtcatcgga gggaaaaata attttacact
    21661 ttcgccgtca ttgtttggat ttacaccgat atttgcagct gcaatagcac tttctatggt
    21721 ttttagtaaa ggtttttccc aaggagtgat gttaatagtt gaagcatcgc ttgctaaaac
    21781 agttgctact tgatttaaag gagtttgagt tccgtaataa tccactgtaa tatgatctaa
    21841 aatatgggta ttaacttttc cagttcttaa agtggtgaag tcttttttta aggcttctaa
    21901 agatttttca ctttgggttt tttgtttgtt aaaaatttca cttagcatta tcatttcctt
    21961 taattattta cttgaattaa catcgcttgg aagttgtgct gcacttggag cgatagaatt
    22021 tgtgtttggg gtagcaggca caataggagc gcttggaata gtagtgttgt tgttttctac
    22081 tttaattttc tctgctagtg agtccttgct agctttattg tataaataac caagaccaat
    22141 agtatttgca ataagtaaaa ttcccatgac aaaggtaaat tttgccaaaa atccagccgg
    22201 tcctttggca ccaaataaac tttcattgct tccactataa gctccaagtc ctatacttga
    22261 acttttttga agtaaaactg ctatacaaat aactacaacg atgataaatt gtaaaatgat
    22321 taaaagagtg atcattgaaa attcctaaaa gttaattttt aaatgattat tttaactaaa
    22381 taaaacttga aaagttttga aacttgaaaa gtttttgtga gaaaaatccc acaaaaactt
    22441 atctgctatt gaagcttctt aagatattaa gtaaagatac gaaaagatta acaaaatcaa
    22501 gataaagtgc tactgcacct tcgattggag tttcataatt tccgcggata atattttgcg
    22561 tatcataaag aatgtaaaat gaaaataata ttgcagctac tgctgaaata gctagattaa
    22621 ctatactgct ttggaagaaa aggtttagta aagatgctgc tacaataacg attaatacta
    22681 taaataaagc tttgcctata acagtaaaat ctttttttgt attcatagca aatacgctaa
    22741 gtcctgcaaa agcaactgtt gttaaagcaa aagcttgagc gatgataatt cctccagctg
    22801 gtagagctaa aactgaaata agcaaaggtg taagtgttaa acctgagcag aaagtaaaac
    22861 caaaaagtaa aacaagattt aatggagctt ctcttttttt ccattgcaaa gcaaataaaa
    22921 gtccgatttc aacagcaaaa aggatccaaa aagttacttg tgattgtata aaaaatgatg
    22981 ctaaagcaaa aattcctaca tacgcaccta ctgttgcagc taataatgaa gcagcaaaaa
    23041 gttgataagt ttgtttaata aaaatactta attcgcttga gcgtgtattt tcaaattctt
    23101 ttgatcttga gtagtctcta tcataaagac tcataaaatt ctccttgcaa aattgttaga
    23161 ttttttaaaa tcttgagcga aatctaacat attagactaa ataaaaagtt aatttatata
    23221 atatctttat gattaaatga aatctttgct gaaattttgt tataatttta agattttagt
    23281 ttcaggttgg ttttatggaa aatcttatta gtggtgcgat taagtttatg caagaagact
    23341 ttaaggagca tgaagaactt tttgaaagtc taaaaaataa gcaaaatccc catactcttt
    23401 ttataggttg ttctgattct agagtaattc caaatttgat caccaatacg ggtccaggtg
    23461 agctttttgt aatacgaaat attgcaaata tagttccacc ttatcgcatt ggggaagatt
    23521 acttagcgac aacttcagca atagagtatg ctttaaattc attgcatatt aaaaatatcg
    23581 tcgtttgtgg ccatagtaat tgtggaggtt gcaatgctct ttattattct gatgaagagt
    23641 taaataaaat tcctaatgtg aaaaaatggc ttactatgtt agatccgata aaaaaagatg
    23701 taatgatttt tgcaagagac gatttggcta tgcgttcatg gcttacagaa aaattaaatt
    23761 tagtaaattc tttgcaaaat atacttactt atccaggcgt gcaagaagct ttagatgaag
    23821 gaaaaataga agtacatgct tggtattata ttatagagac aggtgaaatt tatgagtatg
    23881 attttaaagc aaaaattttt actttaatac aggataggaa agttcaatga agaaaattat
    23941 ttttagttta tgttttttta ttttatacct tggagcacaa gaatttaaat ttattgatgc
    24001 gaatattagt aaagaggatg aaggaattta tgctttagtt gaaaaatatg ttgatcttaa
    24061 caatcaaatt aaagaattta agaaaaacaa tgatgaaaat tcaagcactt ttaatggtat
    24121 tttaagtgaa tttgaaaaag acaaaaagac tattttagca aaaatacccg atatgatagt
    24181 aggacaaaag attaatgaag aggcagtggc tagattttta aaagcaaaag aaaaattact
    24241 agatgttcaa aaaaagaata ttaataagcc ttatatttat acagatgcca ctcttaatct
    24301 agtttatttt aatattgtgg aaagttttta ttcttctttg tttgaagtgg aaaaactttt
    24361 taaaaataca gcaagcagtg aagatttgat tgctactgtt gataaggcaa tggaaaattt
    24421 acaaaattct tctaatgtta atttagatag ttttaaaagc aaaattacaa attcagaaga
    24481 attagaaaaa attaccctaa aagaaagata tatcagtaat gctgtagatt cttattctga
    24541 aattcttaag tatttacgct caaatgcaga tttgcttgaa agtaattata ttttttcatt
    24601 actcgagctt caagtttgga tagatcgtat aaatgaggca attggggtaa gttttgttaa
    24661 tatcggaaaa atagtaattt ctgctctggt tttagtattt tttatatctt taagacgttt
    24721 ttttgcaaat atagtatatt ttttccttgt tcagtttttt tatagaaata aaaatgatgt
    24781 agatgatatt aaagtcattt ttattgagaa tattaaaaaa cccgtaggct tcttgttgat
    24841 tgtctatgct atttctcttt gtcttactat agcaacttat cctgcacctt tgagtgtaaa
    24901 tttaagtaat ttttttcata tagtttatgc agttttaatt gcatggctta ttttaagaat
    24961 gcttgatggt tatggcgtgg tattggtttc taaacttgct caaaaaagtg gaaaaaaaga
    25021 agttgtaaat ttaattatta aaattttata ttttgtcatt attattatag ccttattata
    25081 tattcttgct caacttggtt ttaatatttc ggctattatt gcatctttgg gaattggtgg
    25141 tttagctgtt gctttagcgg cgaaagatat cattgcaaat ttctttgctt ctatactctt
    25201 actttttgat aatagcttta atcaaggaga ttgggtagag gtttcaggca tagaaggaac
    25261 cgtggttgaa acaggactta gaaaaactac tattagaact tttgataatt gtcttgtatt
    25321 tttaccaaat tcaactatta tgggagctaa tatcaaaaat tggagcaaaa gacgcatggg
    25381 tcgccatgtt agaatgtatt tgggtgttgg ttatgatgct actcctgaaa aactagaaca
    25441 atgtgtaaaa gatctaagag aatttttgca tacaagtgat ttagtagctc acgatgagga
    25501 tagcgcatta aaatatggcg atcatacaac aaaatatcgt caaaatcttg tatctattaa
    25561 tgatttagaa ggctataaaa atgcttgtta tgtggcttta agtgaatttg cagatagtag
    25621 tattaatata gagctttatt tttatatcaa agaaataggt ggaaaagatt ttagagaagc
    25681 tagacaaagt ttaatgcttg agtttatgcg tataattgaa aaaaatggtt taacctttgc
    25741 tttcccaagt cgtagtattt atatagaaaa tttaccaccc cttgatttgc aagcaaaagc
    25801 tataaaatag caagatttta tcttgctatt ttttaaaccg gcataacgcg tatatttgga
    25861 cttaattctt cttgtaaaat tgtttcaata gcataaagtg ttgcaccact tccactagaa
    25921 caaccactac aagcaccaag ataacgaata taaacatcaa ttgctgcacc ttcagccttt
    25981 tgtatatcaa tcacttccaa atctccacca tcattatgaa gcatagggcg aatttcagca
    26041 tctaaaacac tttcaactgc ttttaattgt cccactacgg tcatttcatc aaaagctaca
    26101 tcacttttca ttgtattttt gagtttttct ctatctattt cagctctagt ttcagctaaa
    26161 atatctacaa ggtaataatc tcttttttca tgtccgcctg gtttgataca ggatttacaa
    26221 aaagcacccg ctttagtgta ttgtgtgatt tcttctacgc tatgcaaatc attaagttta
    26281 atcacttctt taatagttcc aagacttacc ctagcgcact cgcaaactat aatttgatct
    26341 tcaaaatctt caggacttat gcctttataa tgcgctgctg cttgtttgat tacatcataa
    26401 gccataaccg aacagtgcat tttttgaggt ggaacagctg gagtttctgg attatcacgc
    26461 atagcaaatt ccacatctaa atttgtgatt tttactgctt catctacagt ttttcctata
    26521 caaagatcca ccatagtatc actacttgct atagctgtac cacaaccaaa acttttaaat
    26581 tttgcatcga taattttatc agttttttca tctacaagcc aaaaaagtct taccgcatcg
    26641 ccgcaacttt ctgcgccaaa atcagctacg atcaattttg cattgcgtgc tttagcatct
    26701 tcttcactaa attctcccat atgttgagga ttattcattc tatcttgaac tttttgtgaa
    26761 tactcatccc aaatggatcc accaattaaa ctattttttc ccatttttca tccttatttg
    26821 taattatttg gattataagc ataagtacaa gaaattgctc ttaatctctg tgttgcattt
    26881 ttaatttgtt ttgctgcata atcaatttct tcttcagtgt taaaacgtga caaagaaagc
    26941 cttaaagctg tatgcgctaa atcatgctcc gcaccgatag cttccataat aggattgctt
    27001 tctaaagctt cacttgcaca ggctgagccc gtacttgcag ctataccatt tttatttaaa
    27061 tcccaaagca ttgcttcgcc ttcaactcct ttaatacttg ctaagattgt attaggcaca
    27121 cggtgttctc tttttccaac cactgttgta tcaggcaagg ctaaaatttg atcttctagt
    27181 ttatctctta aacggcgtat atgagaatct tcaaaatcaa gcatagtatt tgcaatacgc
    27241 aaagcctcgc ccatagccac tatataaggt acatttaaag tcccgcttct acgaccaccc
    27301 atgtgttctc caccgtgtaa aagtggagta agcttaagtc ctttttttat aaaaagtcca
    27361 cccacaccct ttggtccatg aaatttatgt gccgaaaatg aagcaaaatc aactcctact
    27421 tgagttaaat taacctttat tttacctact gcttgagtag catctgtatg aaaaagagca
    27481 ccaaattcat gcgcaagttc tgccatcgct ttaatatcaa aaatcatacc tgtttcatta
    27541 tttgcccaca taacacttac aagtgctgtt ttatcgctaa tcactttacg caaatcttct
    27601 acagtagaaa ctccttcttc atttacagga agttctatga cttttactcc aagacttttt
    27661 aaaaaataag cagcagcagt aacagcaggg tgttctacac tagaaataat cacttcattg
    27721 cgttctttat ctaaaatata atcaaaatac acacccttaa gcacccagtt aatgctttct
    27781 gtcgcacagg aggttacaat tatgtcatct aggtcatttg ctccaagtcc tgcataaagt
    27841 ttatccaaag cttctcttaa ggcaggatgt gttgcgctac catattgatg aaggctattt
    27901 ggatttccat acatatcctt taaaaaaggt agcatcaact cataagcatt aggatcaagc
    27961 attgtcgttg cgttgttatc taaatatact ttcactttaa aatcctt
//
LOCUS       DARGEX010000008        25540 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.008, whole genome shotgun sequence.
ACCESSION   DARGEX010000008 DARGEX010000000
VERSION     DARGEX010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25540
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.008"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(80..496)
                     /locus_tag="SF010_000297"
     CDS             complement(80..496)
                     /locus_tag="SF010_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8229263.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQSNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
     gene            complement(560..1303)
                     /locus_tag="SF010_000298"
     CDS             complement(560..1303)
                     /locus_tag="SF010_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG8229264.1"
                     /translation="MTIDLNHNFTSFVLLDKVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFYIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            1461..1886
                     /gene="exbB"
                     /locus_tag="SF010_000299"
     CDS             1461..1886
                     /gene="exbB"
                     /locus_tag="SF010_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG8229265.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            1879..2268
                     /gene="exbD"
                     /locus_tag="SF010_000300"
     CDS             1879..2268
                     /gene="exbD"
                     /locus_tag="SF010_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG8229266.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            2265..2949
                     /locus_tag="SF010_000301"
                     /pseudo
     CDS             2265..2949
                     /locus_tag="SF010_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(2962..3831)
                     /locus_tag="SF010_000302"
     CDS             complement(2962..3831)
                     /locus_tag="SF010_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229267.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEANQFVSNWF
                     ESVKNNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKGDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(3835..3996)
                     /locus_tag="SF010_000303"
     CDS             complement(3835..3996)
                     /locus_tag="SF010_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229268.1"
                     /translation="MLKIILILSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            4091..5074
                     /locus_tag="SF010_000304"
     CDS             4091..5074
                     /locus_tag="SF010_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG8229269.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(5160..6248)
                     /gene="aroC"
                     /locus_tag="SF010_000305"
     CDS             complement(5160..6248)
                     /gene="aroC"
                     /locus_tag="SF010_000305"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG8229270.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(6248..6922)
                     /locus_tag="SF010_000306"
     CDS             complement(6248..6922)
                     /locus_tag="SF010_000306"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG8229271.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(6909..7349)
                     /gene="rnhA"
                     /locus_tag="SF010_000307"
     CDS             complement(6909..7349)
                     /gene="rnhA"
                     /locus_tag="SF010_000307"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG8229272.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(7336..8322)
                     /locus_tag="SF010_000308"
     CDS             complement(7336..8322)
                     /locus_tag="SF010_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229273.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKESDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            8392..10209
                     /locus_tag="SF010_000309"
     CDS             8392..10209
                     /locus_tag="SF010_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8229274.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEELNNFLKEYLSFLKY
                     EKNEEILQQSFRNLNGIFGNKNFTAYDLGFSIQNNDEPF"
     gene            10291..10563
                     /locus_tag="SF010_000310"
     CDS             10291..10563
                     /locus_tag="SF010_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG8229275.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            10550..11101
                     /locus_tag="SF010_000311"
     CDS             10550..11101
                     /locus_tag="SF010_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8229276.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            11085..12368
                     /locus_tag="SF010_000312"
     CDS             11085..12368
                     /locus_tag="SF010_000312"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG8229277.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            12372..12683
                     /locus_tag="SF010_000313"
     CDS             12372..12683
                     /locus_tag="SF010_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG8229278.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            12680..13774
                     /locus_tag="SF010_000314"
     CDS             12680..13774
                     /locus_tag="SF010_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG8229279.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVIRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            13771..14616
                     /locus_tag="SF010_000315"
     CDS             13771..14616
                     /locus_tag="SF010_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG8229280.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPKLLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            14626..16524
                     /gene="tkt"
                     /locus_tag="SF010_000316"
     CDS             14626..16524
                     /gene="tkt"
                     /locus_tag="SF010_000316"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG8229281.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNDISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLRALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESTNELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            16526..17635
                     /locus_tag="SF010_000317"
     CDS             16526..17635
                     /locus_tag="SF010_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229282.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMIAKLNLDISFVEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            17636..18358
                     /locus_tag="SF010_000318"
     CDS             17636..18358
                     /locus_tag="SF010_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229283.1"
                     /translation="MVVKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNISEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            18361..19251
                     /locus_tag="SF010_000319"
     CDS             18361..19251
                     /locus_tag="SF010_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG8229284.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            19251..19850
                     /locus_tag="SF010_000320"
     CDS             19251..19850
                     /locus_tag="SF010_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG8229285.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIHSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            19906..20406
                     /locus_tag="SF010_000321"
     CDS             19906..20406
                     /locus_tag="SF010_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229286.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETIDNTGIYNSTMD
                     FKNLFK"
     gene            complement(20778..21536)
                     /gene="map"
                     /locus_tag="SF010_000322"
     CDS             complement(20778..21536)
                     /gene="map"
                     /locus_tag="SF010_000322"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG8229287.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(21546..22289)
                     /locus_tag="SF010_000323"
     CDS             complement(21546..22289)
                     /locus_tag="SF010_000323"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG8229288.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKEKENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(22291..22749)
                     /locus_tag="SF010_000324"
     CDS             complement(22291..22749)
                     /locus_tag="SF010_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8229289.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTTKKGADCSGFTQSALTQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(22758..23927)
                     /gene="nhaA"
                     /locus_tag="SF010_000325"
     CDS             complement(22758..23927)
                     /gene="nhaA"
                     /locus_tag="SF010_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8229290.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(23924..25072)
                     /gene="nhaA"
                     /locus_tag="SF010_000326"
     CDS             complement(23924..25072)
                     /gene="nhaA"
                     /locus_tag="SF010_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8229291.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(25216..25398)
                     /locus_tag="SF010_000327"
     CDS             complement(25216..25398)
                     /locus_tag="SF010_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG8229292.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         9431 a         4100 c         3611 g         8398 t
ORIGIN      
        1 aatcaaaaaa taaaaatttg gaagactatg cttccaaatt tttgcatcaa attttctaag
       61 ggagttaaat tttcaaaaat taatctaatt tttgacctag gatatttcct tgcatatctg
      121 tataaacttc catattgtta ttaaacttaa atttataacc attaatttct ttgtctactt
      181 caagaatttg agcatttgat tgagttgcac tcactttttt cataacatta ggtaagatag
      241 tatgtggcaa agccttatat tttccatcaa cttctttcca ctctccattg atcataaaat
      301 caatttcagt tccatcattt aaaatcacat cataagaatc tatatctttt ttcaccaaac
      361 caatttgagc ggttttaaaa tttttagaaa taaattcttt ggcattattt ggaagttcgc
      421 tagcaggaac aaccatatct ttagctaaaa gcaccgtagt acccaacaaa gcaagtaaag
      481 ttagttttgc tttcataatt tctccttttt ttcttggttg gcgaaagttt aactcaaaac
      541 tgtgaagtga atgtgaaact taaaaaataa ttttcaagct ttcattctca acacttatac
      601 cttgactttt tataaatttt atttcttttc catcttcaaa ttttaaaata tctttatctt
      661 ttagattaat atcataagtt aaaatatgca aaacaatatc ataaatataa aagaaaagtt
      721 ctttttcttc tatgtttaaa tcacaaactt caagttctaa tttatcaaaa tttctaagcc
      781 cataagtata agcattaact ccattttcac taggataaac actaacatat atccaattat
      841 ataccggcaa gcgattatca tctaacattt ttgcattttc tatataaaaa ctgggctcta
      901 aaacaactgc acctgtataa aaacctaaag catgtttatt atccaaacat aaagctgcaa
      961 ttttcgtaaa cattttagct tgttctaatt tgctttgatc ttgacttagc accgctataa
     1021 gaagatgagc tttatgtttt ttagtttgct ctaaggcatc tttccacata aaattaaaat
     1081 ttgcatagta ttctgcttcg tgattaggta taggattttt aatcaaattt agagtaacta
     1141 acatattttc atatgaaaaa atcacgccct ctttggtaaa attttcatca gctattttta
     1201 tattaaattt atcttctaaa atgcttttta actccgaaaa attaaaatca actttatcaa
     1261 gaagaacaaa agaggtaaaa ttgtgattta aatctatagt catgttaaac cctattaaat
     1321 ttttataaat tataacctaa taaaaataaa tactataaac aagaatttct taaaaattat
     1381 gataattgat attaattata aatttatttt ttatacagta taatctttta aaatttataa
     1441 gtatattttt ggagaaaaat atggaatttt taaaagatta catcgattta attatctttt
     1501 taattctagg aattatggca tttatagctt tttggtgtgt tgtagaaaga atgctatttt
     1561 ttagaaaaat taactttaaa aattatgaga atcaagagca atttgatgat gcgattagtg
     1621 aaaatttaac caccatatat atcatctatt ccaatgcccc ttatatagga cttttaggca
     1681 ctgtaatagg catcatggtt acattttacg aaatgggctt ggcgggcaat atagatgtca
     1741 aatctatagt cgtgggactt tctttagctc ttaaagctac agccttagga cttttggttg
     1801 ctattcctgc tttaatggct tataatgcct tacttagaaa agtttctctc ttaagcaatg
     1861 cttataaggc aaataaaaat gcttaaacta ccaaaaaatg aaggtttaaa tatagtccca
     1921 tttatagaca ttatgcttgt tttgcttgct atagtgctta gtatttcaac ctttattgcg
     1981 catggaaaaa ttcaaatctc acttccttca agtgaaaatg ctaccaatat aagcaataat
     2041 gaaaaaaaac ttcttataac catagacgaa aaaaatactt tttatttaaa tgataaatta
     2101 gctgatttaa atgaagttca aaatgctatt ttttcacttg ataaaaaaac catagtagaa
     2161 ctaaaaagcg ataaaaatgc taaatttgaa agctttgtaa aaattataga ttttttaaaa
     2221 gccaaagaac atgaaaattt tcagattctt actgagaaaa acaaatgaaa actttatttt
     2281 taaatcataa ataccaagct tcttatataa cttttatagt ctttatacct ttactttttg
     2341 tcatttttca ctcaaatgac ttttttaaaa tggaaattaa aaatgaagat tctttttctt
     2401 tagcaataaa acaatttacc caaactaatc caacaaatga gactaaacca acagaatcca
     2461 ttatagaacc tatcaaacca aaacctcagc caaaagttat taaaaaaaac tcctgaaaaa
     2521 attcaaaaaa aggtaaaaaa aatacctcca cgcccaatac caaataaaac cccaataaca
     2581 ccaactcaag aagttaaaac ttttacaaaa acaactgata caaatgtcaa acctaaaatc
     2641 acccaattaa cacaaggaaa agataatcac cctgtattaa aagaaattca aaaagctata
     2701 caacaagcac aattttatcc aaggcaagca aaaaaaatgc gtatgcaagg aactgtaaaa
     2761 gtagaatttt tatggaaaga aaacaaaact ttagcagatt taaaaatcat agaaagctca
     2821 ggatatgatt tattagataa aagtgcttta gaaagcataa gaaaagcttc tttaaatttt
     2881 ccacactata acggagattt aagaattaca ctacctatta tatatgattt taaaacccta
     2941 agaggataaa attataattt gctacactct cttatctaca atttgtgctt cttgattttc
     3001 aattttattt tgaaaatctt tacttaaatt ctgacttaat tcttgcaaag atttttgctt
     3061 cagtttttca aattcttcag gattgctagc ctcaagcttt gcctgctcat cagcacttaa
     3121 agcacttaaa cctttttctt gagctttttg aagcaaatct tcgtctcctt tttctttgat
     3181 attattttcc ttatcatctt ttttattgat tttttgcgga tctatggttt tcatagcatt
     3241 agctccacca cctgatgctt ctttaatgtc gcttaaaatt tctctcatgc taggttcttt
     3301 aacatcacta tcatcaactt taccatcttt atttacatct ttatcaataa aaaaatttaa
     3361 tttttcttct atatttgcat catcagatat tttttcatcg cttgttttaa agcctaaatt
     3421 ttgcatactt tgttgaaggg tacttgtatt aaaatttaat tttacacttt gttgtttatt
     3481 atttaaattt gaatttaaag aaccaaaatt attttttaca ctttcaaacc aatttgaaac
     3541 aaattgattt gcttcgccat taagccttat actaccatca tttctagcaa cataattcat
     3601 ataagaaccg aaattttttt gtaaactact ataattttca tcgcttaaat ttaaagctat
     3661 aagttcacct tgcttatttt caaaaacaac cttaacacca tcgctattta aactcgaaag
     3721 atcttgcacg ggaattttat cttgatcttc tttttttaat acgctaagct cttttttatc
     3781 aacattatta gttaaagaat gggttaaact agcagaagta tcgattttca ttatttatcc
     3841 ttttttacat tttgcaaata aacctaaacg acacattttt ctctcatgtg aattttttaa
     3901 agaattacac tttttaagtt cttgctcgta gttagcacaa gaatttgcaa aagcaaaaga
     3961 actcaaaatg cttaaaatca aaattatttt taacactttc caatccttat tttaaagatt
     4021 ttttagttaa aattatacct tttataatcg acaaaatctt aaaaaacttt ataatctcag
     4081 aaaggaatca atgaaagcat tagctctttt tagcggtggg cttgatagta tgcttgcaat
     4141 gaaactcatc actgcacaag gcatagaagt taaagctcta aatatcaaca taggttttgg
     4201 aagcacaagt gataaaagcg aaatcatgaa aaagcgtgca gcgatggtag gtgcggattt
     4261 tgaaatgata gatgtaagaa attcctatct tcaagaagtg ctttttaatc cacaatatgg
     4321 ctatggcaaa cattttaatc cttgtataga ttgtcatgct tttatgttta aaactgctct
     4381 tgctatgtta aaagaagaaa atgcaagttt tatcatcaca ggagaagttt taggacaacg
     4441 ccctatgagt caaagaagtg atgcaatggc aaaggttaaa aaacttgctc ttgatgaaga
     4501 agatttaatc ttgcgtccta tgtgtgcaaa aaacctacct ctaaccaaac ctgaaagaga
     4561 aggttgggta gatagagaaa aactcgaagg tattagcgga agaagtcgta aaagacaact
     4621 tgaacttgca gctaaatttg gattagaaga ctttgaaagc ccaggtggag gttgtttgct
     4681 aactcttgat agttttgcta aaaaaattcg agatttcata gaatttgaca aagatatgca
     4741 ggttaatgac gcacaacttt taaaatatgg tcgtcattta agattaccca atggagctaa
     4801 aatgatcata ggtagaaatg aacttgaaaa tactctttta aaaggtttaa aaactcctaa
     4861 atatgaagta atagaacttg gagatttaat cggagcttac tctttggtag atgaaaaaat
     4921 ttcagaaaaa gacttagaac ttgccttaaa aatagccctt acctatacta aacacgaagt
     4981 aggaaaaagc tatgaactta aatttaaaaa tcaagcttat acaagtatag cttttgaaaa
     5041 taaggctgat attaatcaat tttttattag ttaaagtata aagtatttag caaaacaagc
     5101 gatatagtat ttgaatcttt tcaaaatatt gcaatcaagc ccatgaaaat gggctttttt
     5161 tattttaatc cataagcatt ttttaaattg tttaaattcg cactcgcatt caaaagcaaa
     5221 caatcagcca aaactaaacg caccatagca ctagctacaa cacttcctct aacacctaca
     5281 caaggatcat gcctaccttt gagttcaaat tccaaattat tgccaaattt atctatactt
     5341 tcttgcttgg caaaaataga aggagtaggt ttaaaataag tttttaaaat aagattttct
     5401 ccatttgaaa ttcctcctaa aattcctcca ctatgattgc ttaaaaactt gccatctttt
     5461 aaagcatcat tattatacga tccgcgcatt ttacttgcat taataccttc gcctatttca
     5521 actgctttaa cagcattaat tcccattaaa gcatgagcta atttagagtc taacttatca
     5581 taaagaactt ctccaagtcc cacaagcata ccactaactt ttgtaaaaac agcagcgcct
     5641 acactatctt ttgaatttct agcatttaaa atttcatttt taaagtcact ttctagtttt
     5701 ggatcaaggc aaaaaatttc acttttctta gcaaattcaa aatcaaattc ttcttctttc
     5761 aaatttgata caaaagttcc tattccaaaa acaccacttt gaacacaaat gccaaattca
     5821 cacaaaagca tcgctgcaac tgcaccacca gccactctag caacactttc cctagcgctt
     5881 gatctacccc cacccctatg atctcttatg ccatatttat aaaaataagt aaaatccgca
     5941 tgagcaggac gaaatagatc ttttaaatta tcataatctt tagaatgagc attttcatta
     6001 aaaactacta tagctatggg atgacccgtt gtatatcctt caaaaacccc gcttaaaacc
     6061 tgagctttat cgctttcttt tcttggtgtt gcaaatttac ttccgccttt gcgtttatca
     6121 agctcatttt gcaaaaattc ttcatcaaat ttaaccccag caggcattcc atcaataata
     6181 catccaacag ccacaccatg agactcacca aaacttgtaa atttcaatct cgtaccaaag
     6241 gtattcacta taaagctcct aatttctcaa gtgcaatttt tgctgccatt tgctgtgctt
     6301 cttttttgct tcccgcaata gctcttgcaa gttctttacc atcaagcatt aaagcgattt
     6361 caaattgctt taaatgatca ggaccaaaag cacgcactgt ttcatactgc ggagtttgtc
     6421 cgatttttcc ctgtgtaatc tcttgtaatt ttgttttata atcttttata agaatttttg
     6481 catcaatttg agggaaattt ttttctataa gtcttaaagc aatagttttt gcaaactcaa
     6541 acccagcttc taaatgtata gcacctataa tggcttctaa cgcatctgaa agtatagaag
     6601 gcttttcttt tcctccattg ttttcctcag caacactcat aaaaataaaa tcacccaaat
     6661 ttaaactatt tgcaattttt gcaaaagact tttcattcac taaagccgct ctaagcttag
     6721 ataaatctcc ttcggcatct ttggcgaatt tatgaaaaag gtattcacct acaactaaat
     6781 caagcacggc atcacctaaa aattccaagc gttcgttgtt gtaagatttt ttaaaacttt
     6841 tatgggttaa agcatgtata agaagatttt tatctttaaa ttcataagtt aaactctgct
     6901 ctagcttttc aatgtttttc atcattttcc cttgcaattt tcaaagcagc ttcacgcgcc
     6961 aatgtatcac acctttcatt ttccaaatgt ccattatgtg cttttaccca aaaagcctta
     7021 atcttatgag attttgccac tttaatatat tccttccata aatctatatt ttttttacct
     7081 ttaaaatcct tttttatcca tccttctagc cattcattaa tactttgaac cattaggtta
     7141 gaatctgtaa aaagcgaaat ttcacaaggc tcttttaaag ccttcaaaga ttcaataatt
     7201 gccattagct ccattctatt gttagtggta ttagcctcag ctccaaaacc ttccttttga
     7261 tactccttat aacgcaaaat ataagcccat ccgccaaaac ctggattatt aagacatgag
     7321 ccatctgtat aaatttcaat gtgtttcatt gtttttcact tcataaataa ttttacaagt
     7381 attaaactca taacaaacag gacagtgata aaaaaacaaa ggcattacat ttttacactc
     7441 agaacaacga tatgaaaatt ctaaccccgc attaaaagaa ttatctttta aaatttttaa
     7501 cattttaaag ttagaatttt taaaaacaaa ctggtgcgta tcatcatgct ttgaaatttt
     7561 acccaaagca taaaagaatt ctaaaaaatc ttgattttct aaattaaacg cttcattttc
     7621 tctataaagc aaatcacaaa tatcaaaaaa attttgccct aaaaacatat gatatttttc
     7681 aaaaactaaa cgccccaaca taggattatc ttctatttta aattctaaaa gttttttctt
     7741 tttttcttca tcagtaatat taaaagtaca aagttctaaa gctttgataa aatcactctc
     7801 tttttgtaca tcttcattaa gctcaaaaag acattctaaa agttctaaat tttctttata
     7861 agaacgaagt tttaaataaa caatttttaa aagttttaag gcttgtatat ttcttggacg
     7921 cagttttaaa gcttgtaata aaacttcttt tgcacgctct aaaaatcctg ctttaaaata
     7981 aacttttgct aaagaaagga aaataaattc tctttcttgt ttatctttac atttttcaag
     8041 agcaatcaaa taaatttgag ttgctttttc aaattccccg cttttagtaa aaatttcagc
     8101 caaaaaactt aaatttccaa aactcaagct actatttctt aataactctt tatgagcgtt
     8161 atccatttca aattttttta taaatttttc aagcttttgt tcttcatctt tgctagcaaa
     8221 tattttccaa atataatttg caacagctac aacaaatact aaaatggtta aaattataag
     8281 ccctactaaa gggtctctgt attctacaaa gaaaaaatcc atagtctcgc tctaaaaatt
     8341 ttatgccaaa ttatagccaa atctttgtat aattttaaca aggtttgtaa aatgataact
     8401 aaagaaagta tagaaaattt atcccaaaga cttaatattg ttgatattat agaaaattat
     8461 attgaagtaa aaaaacaagg ctctagtttt gtgtgtatct gtcctttcca tgcagataaa
     8521 aacccgtcta tgcatatcaa tcctaccaaa ggtttttatc attgttttgc ttgcaaagct
     8581 ggtggagatg cttttaaatt tgtaatggat tatgaaaaat taagttttgc cgatgcagtt
     8641 gaaaaagttg caagccttag taattttact ttgagttata caaaagaaaa acaagaaaat
     8701 aaaaaagagc taaagtctat actaccaagc ttaaatgcgt attttaaaga taatctcaaa
     8761 caccacaaag aagttttaac ctatctttac cagagagctt taaatgacaa agatatagcc
     8821 aaattcgaat taggttttgc aggagcaagt gaagatagta taagattatt gcaaaatcaa
     8881 aaaattcctt tagaagatgc tatgagtgtt ggagctttaa aaaaagatga aaataatgaa
     8941 ttttacgcaa gttttatatg gcgtatcacc tttccaatct acgatcataa agacttattg
     9001 gtagggtttg gaggacgcac tttaaatccc aatgtaccgg caaagtatgt aaattcaccc
     9061 caaaatatac tttttgataa aagtagaatt ttttatgctt ttaacatcgc taaagaaaat
     9121 atagccaaaa aaaaagaaat aatagtatgt gaaggctaca tggatgcaat agcttttcac
     9181 aaagcagggt ttaacaatgc tgtagcagtt cttggaacag cattaaccga acatcatcta
     9241 cccttaatcc gccgttatga tgcaaaagtg attttatgtt ttgacaatga tgaagcagga
     9301 ttaaaagctg cgacacgatc tgcattttta ttaagcacaa acaaaataga cggtaaagtg
     9361 gcaattttgc aaggcggaaa agatcctgct gagctcgtag caaaaaatga aagcacaaaa
     9421 ctccataata tactcgatga aggaatagag cttggtgaat tttatatcag acgcttaata
     9481 tccactcatt ccataatttc tgctcttgat aaacaaaaag ctttagaagc tatacaaaaa
     9541 ttcaccttta atcttgaacc tttagtggca aattcttaca ctagtctagt ttcaaattta
     9601 ttaaaagtgg atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac catacaaacc
     9661 cctttaattt ctcaaaataa atacaatttt cctaaagaaa aaattcacat tgcagaatta
     9721 gaacttatag cttttttaaa acagcatcca gatatatgta acgattttaa gcaaattagt
     9781 gatagtgttt gttttaaaca taagatttta ttggataaaa ttttagaaaa aaaaggttat
     9841 gaagatagtg atattagaga atttgaaagt aaaaatattc gaaaaaattt aaactatagc
     9901 gaattcttgt taggtatttg caaggttaat ttagcttttt taaacaatgt aaaaattaaa
     9961 aattctacac tcgcattaaa aaaacaactt tttacgctta ttgataaaaa tttaaatctt
    10021 ttaattaaaa atttaaatac cgaagaatta aataattttt taaaagaata tttaagcttc
    10081 ttaaaatatg aaaaaaacga agaaattctg caacaatcat ttagaaactt aaatggaatt
    10141 tttggtaaca aaaactttac agcttatgat ttaggattta gcatacaaaa taatgacgaa
    10201 cctttttaat ttatttaaat ttcaagcctt aatttacctt tttttaaaca caatcacgct
    10261 aaagtatata aaaattttta aggataaatt atgatgcctt ttagtgatga agagcttata
    10321 aatcctgtta aagcaagttt agaaaagagc ttgcctatgc ttgaacgtga tggcggaggg
    10381 cttgaatttt taggaattaa aaatgggatt gtttatgtcc atttaatagg agcttgtaaa
    10441 ggctgtgcat cgagtggaac aacgctaaaa tatggtcttg aaaggcaact taagattgat
    10501 attcatccag aaatcactat aatcaattta aacggcggag cagacgaatt tgcaaaatta
    10561 taaaaaactt ggaattgaac atttttacaa gaaagatttt aaaactgcaa aaatgtattt
    10621 ttctatggct tatgaaaaac gcaaaaataa acgcttgcta aattttatct gcctttgtga
    10681 tcttgcttta aaatctccta aagaagcttc tttacttttt gatttttata tagaacatta
    10741 caaaatctct agcattgata aagacttaga agaaatttta agtacaattg aatttaaaaa
    10801 acaagaaaac aaacaggaaa acgaatttga agatgggcat gcgttaaatt atcaagattt
    10861 tttaaaaagc gaagaagaac ttggctttca aaaaagtttt gaaaatatca ttaacagcac
    10921 taagttagtt attgataatc gtgatgattt tttagatttt ttggaaaaat tacttgataa
    10981 tggctataaa gatatgactt taaattacat agaaaatgtt atgcctcatt tttgggcaaa
    11041 tgatagattt atcaaactcc aagaaaaact catgggattt aaaagtgaaa ttaaaacttg
    11101 aaaattcatt cattacagat aacaccttag agtgtgaaaa agaatgcttt tttttgcaaa
    11161 ccacacaaaa tgctaaattt cacgctcaag ccttagaaaa aggtgcaaaa atcattgatg
    11221 taaatgagtg taaaaaactt ttaaaaatcg atgaaaagat tcaaatcata ggaatcacag
    11281 gaaccaatgg caaaaccaca accgcagcag cgatttattc tatcttattg gatttaggtt
    11341 ataagtgtgg gctttgtggg acaagaggag cttttatcaa cgatgaacaa atcgatgaaa
    11401 aatccttaac cacctcccct attcttaaaa ccttagaata cctacaaata gccactcaaa
    11461 aaaaatgtga ttttttcatc atggaagtaa gctcacacgc cttaattcaa aaccgcatcg
    11521 aaggcttaaa ttttgctgct aaaattttta ccaatatcac tcaagatcat ttagattttc
    11581 atggtacttt tgaaaattat aaagaagcaa aagaactttt ttttaccgat gagagtttaa
    11641 aatttatcaa caaagatgct ttggctatta aatttaatgt gcgtaatgct tttacttatg
    11701 gcatagaaaa tcctgcttta tatcaaatca aagcttattc tttagaagaa ggcattagtg
    11761 ctattgtaac aaataaaaat caaacttttc acatagactc gcccttgcta ggacttttta
    11821 atctttacaa tcttctagtt gctagtgctt gtgtgaatga actcgtaaag cctgatttaa
    11881 aagacttgga aaaagctatc agtggatttg gcggggtttg tggcagggta gaacaagtag
    11941 caaaaggcgt gattgtagat tttgctcata cgcctgatgg cattgaaaaa gtgcttgaca
    12001 ctcttaaaaa taaaaaactc atcgttgttt ttggagcagg tggagataga gataaaacca
    12061 aacgcccttt aatgggaaaa atcgtcgaac attttgcaaa aattgctatc attacaagtg
    12121 acaatccacg cagtgaagaa ccaaaaacca tcatggaaga aattttatca ggctttacta
    12181 aaaaagaaaa agttttaatg atagaagata gaaaagaagc tataaaaaaa gctttagaac
    12241 taaaagaaaa tgacgattta gtcgttattt taggcaaagg tgatgaaact actcaagaaa
    12301 ttaaagggat aaaatatcct tttagtgata aagtagttgt taatgaaatt ttaaaaaatc
    12361 aaggataatc aatgtttgaa aatatggatt tttctaaaat gggagaactt ttaaatcaag
    12421 ttcaagaaaa agcaaaaaat atagaactag aacttgcaaa tcgtgaattt agtgccaaaa
    12481 gtggagcagg acttgttaaa gtaagtgcca atggaaaggg tgaaattatc gatgttagca
    12541 ttgatgattc tttacttgaa gataaagaat ccttgcaaat tttacttatt tctgcaatta
    12601 atgatgtttt ggctatggtt gcgcaaaatc gttcaagtat ggcgaatgat gttttaggcg
    12661 gttttggagg tatgaaatta tgaaaaaaat tttaattatt tgtatgcttt ttactttgtc
    12721 ttttggtata gaaagaccta aatttgaaga ttttttagca ggttatgaaa gaaataaggc
    12781 aagcatgctt aactatgaag gaatgccagc ttttgcactc agtgaaaatt tacttgctgt
    12841 gttaaaacag cctaatacta agcttaacaa atatgtaaaa tacgatccat ttttaaattt
    12901 ataccttgta agaactgact ttagcctaat ccctactcct atgggtgatg aagaaaaact
    12961 tactcgtaat gattgggttg gaatttggga tcctaataaa ccctatatag gacatattaa
    13021 gtatttagct caaaatattg atgaaaaaga tcaacttgat tttaattcta aaataggact
    13081 tttagggact ccgtgctgtg aaatgatggg gattgcttta aataatagct cttttatagg
    13141 caatcgctat ttaaaacatt ttatgaaata taacgatgtt tattgggggg atattggcgt
    13201 tgattttgtt attcgagaaa ataaaattta tgttaacaat gtaagaaaaa atccacaatt
    13261 tttaatcaac gatcaagtta taagtgttga tggtttaccc gccaatgatt taagaaaact
    13321 caatgaaaaa attctttttg cagatcgcgg aagcactctt tattttcaag tgttacgtga
    13381 taatatggat ttaaatattt ctactgaagt ttttgcaaaa gatttgagca aatttaacct
    13441 tcctgattct aaaccaaaac caaaaattac aaatttcaca agcaatcttg gtttaacggt
    13501 taatactagt cttgttgtaa ccaaaataga tccaaaatca aaagcatcaa atgcaggatt
    13561 tatggtagga gataaaattt tacgcgttaa taatattatt ttaaataatt ttaaagaatt
    13621 acaaaatatt ttaagcgctg gtaatgactt tagcatctta attgaacgca aaagtactaa
    13681 attaccttta tcaaatttca acaatgaact aggcggaaat gccaactcag gtggcgatgg
    13741 taaatttcaa tttttcataa ggcttactaa gtgaatttaa aagaactttt tatccatcac
    13801 ttagaaaaaa atctacctaa agtcgaaagc tttcatcctt tttttaatga agctttagct
    13861 cttatgctaa aagcaggagg gaagcatttt cgtgcacaat tgcttttaag cgtagtacaa
    13921 agcaataaac ctaaactttt aaatcaagct ttagatgtgg ctttagcttt ggaatttatc
    13981 catacttatt cactcataca cgatgattta cccgctatgg ataatgcgga ttttagacga
    14041 ggaattccaa ccttacacaa aagctacgat gaaactacag ccatcttagt gggtgatgct
    14101 ttaaatactg aagctttttt agttctaagt catgctcatt taaaagatga aatcaaaatc
    14161 aaactcatca aaacccttgc ctttaatgca ggacttaatg gaatggtcat aggacaagct
    14221 attgattgtt tttttgaaga caaaagactg agtttaaatg aacttgagtt tttacacaca
    14281 cataaaaccg caagattaat cgctgcagct ttaaaaatgg gttgtgaaat ttgcgaactt
    14341 aacaacgaag aaagcaatca aatttacaaa cttggtttaa aactaggact gatttttcaa
    14401 atcaatgatg atattatcga tgtaaccaca agtcaagaac aaagcggaaa gcctactaat
    14461 aacgatattc ataaaaattc ttttgtcaat ttgcttggac ttgaacaagc cataaaaaca
    14521 aaagaaaatc ttcttagtga atgcgaacaa gatttagaaa aacttaatga aaaactcgca
    14581 caaatgatac aaaatttaat aattcaatac ttataaaggc aaaaaatgga cattcaaatt
    14641 ttacaagaac aggcaaatac tctaagattt ttaagtgccg atatggtgca aaaagcaaac
    14701 tcaggacacc caggtgcacc tttgggctta gcagatattt taagtgtttt aagttatcat
    14761 ttaaaacaca atcccaaaaa tccaacttgg ctaaaccgtg atagacttgt attttcaggt
    14821 ggacatgcaa gtgctttact ttatagtttt ttacatttaa gtggctatga tttaagccta
    14881 gaagatctta aaaatttccg ccaacttcat tctaaaaccc caggacaccc tgaaatttca
    14941 actcttggag tagagattgc tacaggccct ttaggacaag gcgttgccaa tgctgtaggc
    15001 tttgctatgg cggcaaaaaa agcacaaaat ttactaggta gtgatttaat cgatcataaa
    15061 atttattgtc tttgcggaga tggagatttg caagaaggca tttcttatga agcttgttct
    15121 ttagcaggac ttcacaaact tgataatttc atacttattt atgatagcaa cgatatctcc
    15181 atagaaggcg atgtaggttt agcctttaac gaaaatgtaa aaatgcgttt tgaagcacaa
    15241 ggatttgaag ttttaagtat aaatggacac gattatgaag aaattaataa agccttagaa
    15301 caagctaaaa aatccacaaa accttgtctt atcatcgcaa aaacaactat agcaaagggt
    15361 gcaggagagc ttgaaggcag tcataaaagc catggcgcac ctttgggtga agaagtgatt
    15421 aaaaaagcca aagaacaagc aggttttgat ccaaatatca gttttcatat cccacaagca
    15481 agcaaaatcc gctttgaaag tgctgtagaa cttggggatt tagaagaagc aaaatggaaa
    15541 gataagcttg aaaaaagtgc taaaaaagaa cttttagaaa ggctattaaa tcctgatttt
    15601 aacaagatag cttatcctga ttttaaagga aaagatcttg ctacaagaga tagtaatggt
    15661 gaaattttaa atgttttagc taaaaattta gaaggatttt taggtggaag tgcagactta
    15721 ggcccttcga ataaaacaga acttcacagt atgggagact ttgtagaagg taaaaatatc
    15781 cattttggta tcagagaaca cgctatggca gcgattaaca atgcttttgc aagatatgga
    15841 attttcttac cattttcggc aacttttttc atctttagcg agtacttaaa acctgccgca
    15901 agaatagcag ctctaatgaa aatcaaacat tttttcattt tcacacacga tagcataggc
    15961 gtgggcgaag atggaccaac acaccaacct atagaacaac ttagcacttt tagagctatg
    16021 ccaaattttt taacctttag acctgctgat ggggtggaaa atgtcaaagc ttggcaaata
    16081 gccctaaatg ctgatattcc gagtgctttt ctgctttcac gccaaaaact cagagctcta
    16141 aatgaacctg tttttggaga tgtaaaaaat ggagcgtatt tactcaaaga aagcaaagag
    16201 gctaaattta cacttttagc aagtggaagt gaagtttggc tttgtttaga aagtacaaac
    16261 gaacttgaaa aacaaggttt tgcttgtaat gttgtttcca tgccttgttt tgaacttttt
    16321 gaaaaacaag ataaagctta tcaagaaaga ttgttaaaag gtgaagttat aggtgttgaa
    16381 gcagcacatt ctaatgaact ttataaattt tgccataaag tgtatggcat agaaagtttt
    16441 ggagaaagcg gcaaagacaa agatgtgttt gaacactttg gatttagcgt ttcaaagctt
    16501 gtaaatttta tccttagcaa ataaaatgaa tacaaatttc aaatttcaaa ataacactct
    16561 ttttatcttt ggaatttggg ataaaacaag catttataag ttaaaaataa aagatttttt
    16621 agctttgatc caaagcaagg aagtgatttt tgattttaaa gatctaaaag caatcgatac
    16681 cgctggagtg agatttttcc ttgctttgga aaatgatctt aaagataaaa atattaaaat
    16741 caccaaagaa ggcttaaatt cacgctttca aacccttttt gaactttgtg aaaaaaacta
    16801 ccaaagacta agcaaaacaa aaaaatcaca taaaaatttc agtgaatact ttatcgatct
    16861 tggaaaatta agtttagaac ttttaaaaat tttaagaaaa ttcatcaatt tcacaggagc
    16921 ttttttcaca agtctttttt tatgccttaa aaatcctaaa aattttcgct ttattgcttt
    16981 tttatatcat atagaaaatt ctgcttttaa agccttacct atagttattt taaccgctct
    17041 tttagtagga gtggttttag cctatcaggc tgcttatcaa ctcgcacaat ttggagccaa
    17101 tattttcata gtggatttga tgggaatttc agccactaga gaacttgcac ctttaatcgc
    17161 tgccatagta atcgcgggaa gaagtgcaag ttcttatacc gcacaaattg gagtgatgaa
    17221 aattactgat gaaattgcag ctatgaatac tatgggtttt cgttcttttg aatttattat
    17281 tattccacgt gtcatggctt tggtagtggc catgccttta atcgttgcca ttagcgatgc
    17341 aatcagtatt ataggcggaa tgatgattgc aaaattaaat cttgatattt cttttgtcga
    17401 atttttaaga cgctttagag aagctgtcga tataaaacat atctttatag gacttgcaaa
    17461 agcacctatt tttggatttt taataggact tattgcttgt tttcgtggtt ttgaggtaaa
    17521 aaacactaca caaagcatag gaatttatac aacaaaaagc gttgtaaatg ctattttttg
    17581 ggtgatagct tttgatgctt tattctctgt tgttttaact tctgcaggaa tttaaatggt
    17641 tgttaaagcg caaaatatca ttacaaaatt tggagaaaaa attgtccatg atggcgtaag
    17701 ttttgaaatc aaaaaaaatg aaatttttgg tattttagga ggtagtggaa gtggaaaatc
    17761 cgtcctttta aaacaaatgc ttatgcttga acattttgat ggtggagaat atgaaatttt
    17821 aggctataaa cttaaaaata tcagcgaaga agatgcactt gctttgcgta aaaaatgggg
    17881 tgtggttttt cagtttgctg cactttttag cttttttaat gtttatgaaa atatcgccat
    17941 tcctttaaaa gaatacactc atttagatga aaatagcata caagaactgg ttttaatgaa
    18001 gctaaaaatg gtaggcttaa acgaaagtgt tttaaaacaa tttccaagtg aacttagtgg
    18061 cggtatgcaa aaaagagtgg caattgctag agctttagca cttgatagta aattgctttt
    18121 tttagatgaa cctacttcag gacttgaccc tcatagtagt cgtgaatttg acgatttggt
    18181 tttagagtta aaaaaaagtt ttgatttaaa tatcattttg gttacacatg ataaagaaag
    18241 tatgaaaaat ttactcgatc gttttatcat tttagaaaat aaaaaagttg gattttgcgg
    18301 tacttatgaa gaattacgcc tgcaaaatga acgacttttt aaaagattta tggagtaaaa
    18361 gtggaaaata gagcaaatta tttttttgta ggactttttg tttttggagt attttttgca
    18421 agccttggtt tcatactttg gcttggtgga tactctaaag aagaaagttt taagtattat
    18481 gaaattcaca cacaagaatc cgttgcagga cttggcataa aagcacccgt aaggcttttg
    18541 ggcgtggaag taggtagcgt agaagaaatc agcatttaca atcaagatga actcggcgtt
    18601 aacatacgca tcaaggtcaa aaataacacc cctataaaag aagatacttt tgctactttg
    18661 caacttcaag gtatcacagg acttaaattt gtccaacttc aaggcggaag taaaaatagc
    18721 aaagatttag tatctataca gggaaaactt ccagtcattc cttttaaaga aagtttttta
    18781 gcaactatag atagacaaag tgaacatatt ttttctttag ttaaaacggc cgatgataaa
    18841 tcaaaagaac ttttaagcga aaaaaatctt aaaaatctag aaatcctttt gcaaaatcta
    18901 gcagaattaa gtgcaaattt aaacgctaat tctaaaaatt taagccttaa tctttcaaac
    18961 gcaagtttaa aaataggaaa aatggctgat aatataagcc ttagtgcgca aaatttcaac
    19021 tccagtctta aagacataaa agaaagtacg atgattttaa aaaatttcat aaaaaaagct
    19081 gatgaaaaat taaacactta tgatgatatt aaagcatctt tgatgcaaaa tttagagctt
    19141 tttaaacgag ttttaattga aagcaatatt ctaatagaaa atttacaaaa cagccctgct
    19201 gatttgattt ttaaagaaac caaacctaaa ctaggaccag gagaaaaata atgctaaagc
    19261 aattattctg tattttgact tttattttta tgttatgcgg atgctcttta agacacgaaa
    19321 ccatcaacaa aaatgaaaat atcatattaa aagatgaagg aatagattca aatatttttt
    19381 ttaaaaaaac cggtaaaatt cttaaaattc gcaatgcaaa tgcacctttg tatttaaact
    19441 cgcgagctat tgtttatata gataatggtt ttagcaacaa atacgcacat tatttctggg
    19501 gagatttacc aagcaatctt tattcttttt taattttgtc aaaatttgaa caaagcaata
    19561 tttttacaac cctactttct tcaacaagct ctttaagtgc ggattatgct cttgaaagca
    19621 ggattaactc ttttgagcaa attcttaata acaatgaaaa ctacgctcaa atttctataa
    19681 gcgtaaattt cataaatctt gaaaacaatc aaataatagc tcataaaatt ttcaatacta
    19741 aagaaaaaat agaaaaaaaa gacatccact ctacttataa tgcttttcaa aaagccttga
    19801 ataaaattgg caatgagatt gttttttggg taaattctaa cttatcctaa tttaggaaca
    19861 ctttttgctt tttaaatatt gagcaatatt tttgaaaggt aaacaatgaa aagtgattta
    19921 gatatattta aaaaacactt aggtgaaatt caaggcgtga atgaatttaa agcaaatcaa
    19981 atttgctctc aaatcaatga tgcaaatgat tttataggag cacttcaagt gcttgatatg
    20041 tctttaaaaa aaatagaaaa aagtattcta gaaagaatag atgaaaattc agatgatatg
    20101 caaaaaagaa ctcttgatgc cacagcatca caacttatac aaaactgctc tttcatggga
    20161 acagctcttt ttggaaatat tttcaatgtt tatgttggta aaaaactttt tgaatttgaa
    20221 attgctaatc cacttttaat tcttcaaaca agtaattacg aaggtgtatt ggcctatata
    20281 caagataaaa gagatgaaat aaaaatcatt ctatcagagt tagcaaccgc aatcaccatg
    20341 ggcgaaacta tagataatac tggaatttat aactctacaa tggattttaa aaatttattt
    20401 aaataagaaa tagtaatcgt ttgttctctt taagaaaata taatatattt tagcttaaag
    20461 agattttcca aactcttaaa agagagttag gctacgaata aaaaggggag ggaaatagcc
    20521 taacccaaaa gagatcttaa aagatctctt taaaccaaaa taaatattta gataatttaa
    20581 caacttttat taaattatat aaaccatatt tatgttttag tttaatacga tgtgacattt
    20641 tattctaaaa acacttaatc tgctataaaa atatcattta gtaacttaaa ttattaaaga
    20701 atattactac aatattattt aaaaaatttt aaatttttag gattttaaga aaaaaatatt
    20761 atttttataa tttaatatca tatcatagaa agaatttcag cacgcccatt aatcacggca
    20821 acacaatgtt cataatgagc cgcattcagc ccatcaatac ttccagcatc ccattttcca
    20881 ttataatgct ttggtgttcc atctttttgg catatcatag gctctatgca aaacaccatt
    20941 ccatttttaa ttttagggcc actttttgca ctcgcacctt tttctaaata gtttaaaatt
    21001 tcaggctctc catggggctt tcgtcctata ccatgcccgc aatatccacg aagcgggaca
    21061 aaacctcttg catggataaa ttcgcctaaa gcagctgaaa gttccttaaa acgcattcca
    21121 tcacgaataa tatctatagc atgatataac gcgtctttag cacaagagat taaagcttta
    21181 tcagtgggtg aaacttctcc tatagcaata gttcttgctg catccccata atacccatca
    21241 atcaaacttc ccacatcaag acctaaaata tcaccctctt tgataatttt atcatctgga
    21301 attccatgga tacaaacttg atttaaagat gtgcaaatgg cacctggaaa accataaagt
    21361 cccttaaatg atggcttggc gccaaggctt aaaatataat cttctgccat tttatcgatt
    21421 tgttttaagc tcattcctat tttaatttca ttctctaaaa aatttaaagt ttttgctaca
    21481 atttgatttg ctattcttaa tttttctatt tcatctggtt ttttcaattc tatcatttta
    21541 tttccttata aatttagcca aattttagca gtatttttta aagattcaac atcgcttgaa
    21601 gcataaaaat gtaattttgc tttatgattt ttcaaatcta tattttcttt ttctttaaga
    21661 aattcaacta tagcatctcc tgaatgaatt aattttgttt tatcaccaaa atacttactt
    21721 aaagaacgac ctagtaaagg gaaatgagtg caagcgagta tcaaagcatc tggagttgtg
    21781 atatttttaa aataatactc catagcactt tgcaaaaaat ctccttcaaa aataccttct
    21841 tcaaccatag gcacaaaaag ccctgtagct aaagcattta tatttgtata tccttgggat
    21901 aataaacgct tttggtattc ttctgattta atggttgctt ttgttgcaat gactaaaatt
    21961 tctttatttt tatcatgcaa agcttttatc gttgcttcaa cccctgcatc aattacacca
    22021 tatactggaa aatgtgcttt tgtccttaaa gcatctaaag cataagcact agcagtatta
    22081 catgcaatga taagcatatc aatttgaaat tgttcaaaaa attccaatgc ttcaagacag
    22141 aactttataa tagtatcttt atcttttact ccataaggaa ctcttgcagt atctccataa
    22201 tagataattt catcaaaaag tctagcttca taaagagatt ttaaaacgct aagcccccct
    22261 accccgctat caaatacacc tattttcact ttaatacctt cttgctccta tataacgagc
    22321 cttccaataa gaactattta gctcgacttc ttttactcca cctttagtag ataaatgtat
    22381 aaattttccc ttgctcatat aaataccaac atgcatacca tttggccctc tacctgtctt
    22441 aaaaaatacc aaatctcctg tttgcaattt tgatttagaa acttttcttc cagaacctaa
    22501 ttgagttttt gtagtgcgag gtatgcgtat attaagctga gttaatgcgc tctgtgtaaa
    22561 tcctgaacaa tcagcacctt ttttagtagt tccacctaaa acataagggg tttttttcca
    22621 ttcatttgca ataaccttga gccttgcttc tttatttgtg ttgtaactag gacgatagtt
    22681 tagattctga taaaaactac atccacttat aaaaaatata atcgtaataa taaaaaaaat
    22741 atgcctcatc aatcccctta agatcgagta gtaaagaatt taagataaat aaaaccccaa
    22801 atcccagaac aaaatgaggc tataagaata gctaagttat ctgcataatt aaaaatatca
    22861 ctaacttcat acgccaatcc atcaataaac aaactcattg taaaaccaat tcctgtaagt
    22921 atgcaaaccc cataaagttg tttcaaattt gaaccttggg gcaaagctgc aaatttaaag
    22981 cggattgcca aataagaaaa taaaaataca cccacttgtt tacccacaaa aagccctaag
    23041 aaaataccta tacttacacc tgaaaaaatt gctcctatat cgatattgga taaatttact
    23101 ccagcgttag caaaagcaaa taaaggtaaa ataataaaag caatccaaaa ttttaagctt
    23161 tcataaattt cttctaaaaa tgcttcccca tttttagttt gcatcggtat aaaaaatgct
    23221 gttacaattc cagctaaagt tgcatgtact ccacttttta aaacactaat ccaaagaata
    23281 actgagcaaa taaaataaaa agactttctt gttatcccta aaagatttaa aataagcatt
    23341 accaaaatag caagtcctgc aacgacaaaa gcaactattg ataattttgt cgtataaaaa
    23401 atagctataa ttaaaatagc acccacatca tcaaaaatag ccaaagaaag taagaaaatt
    23461 tttaaacttg atggaatgtg cttgccacac atcattaaaa tcgctaaggc aaacgctgta
    23521 tctgtggctg taggtatagc ccaacctttt aaagtataag catctcctat atttaccaaa
    23581 gcaaacaaca tcgcaggtat aagtataccc cctaaagcag ccataaaagg taaaacaata
    23641 tttttaggat ttttaaaatc cccatgcaaa aattccttct taagctcaag ccctatagca
    23701 aagaaaaata tagatataag cccatcattt atccaaagta aaaaaggctt gttaagctca
    23761 aattcaccta cactaaatcc gacttttaaa tttagaaatt ctcgataatg ttcgctaaaa
    23821 gacccgtttt gcacaagcaa agcaagcaaa gtacaaacta taagtaaaac accaccaaaa
    23881 gcctcgttta aaactaaagt ttttaattta tgtactatat tattcattta acaatcttaa
    23941 gataaataaa accaacaatg gcacttaaaa aacttgctat taaaatagca agtttatccg
    24001 catgttcaaa aatatcacta tttttataag ccaaaccatc aataaacaaa ctcatcgtaa
    24061 aaccaatgcc tgttaaaata catataccat aaaattttcc atatttaata ttttcaggta
    24121 gttttgcaag cttaagtttg atagcaataa aacaaaaagt aaaaacacct agttgctttc
    24181 ctaaaaataa tcctagaata attccaaggc ttacaggcga gaataccgaa ccaagatgca
    24241 tatctctgat atcaatccca gcattggcaa aagcaaataa aggtaaaata aaataaacca
    24301 cccaaggatt taaatcctta agaacttcat gcaaataagg ttttttattt tttgtatcaa
    24361 gcggtataaa taaagaaata atcacaccag ccaaagtcgc atgtactcca cttttaagca
    24421 tagctatcca caatacaaca cctactaaca catacaaaga aagatgggtg atgtgataat
    24481 aatttaacaa aagcagagca aatatacaaa acaaacaaat aataatcgcc aaagctgaaa
    24541 gctgatctgt ataaaataaa gcaataataa caatagcacc caaatcatca aaaatagcta
    24601 aagaaagtaa aaaaagcttt aaacttgtag gaattttatt tcctaaaagc atcaaaatac
    24661 ccactgcaaa agctatatca gttgctgtag gtattgccca acctttcata gcaaaatcat
    24721 gagaataatt aatagcaata aaaattaaag ccggagtaat cataccccct aaagctccaa
    24781 atataggtaa agatacagct cttatatttt taagttgccc acgtaaaatt tcatatttta
    24841 actcaagccc tatacataga aaaaatatag ctatcaaacc atcatttatc cataaatcca
    24901 acgactttga aatttgaaaa tgatcaaatc ctactgtaaa attagcatga aaaaaatctg
    24961 tataaataac acttaaagaa gaatttttac ataataaagc taaaaatgta aaaaatataa
    25021 gcaaaatacc agggaaagtt tcacttaaaa ccatcttctt tatcatttgc atccttgctc
    25081 ctaagtaaat atttgtaaaa aatttaatac gataaataaa atggtaaaat tataacgaaa
    25141 aaatactaaa gaaataatta tttaaaaaaa caagcccaag ataccaaaaa gttcttaagc
    25201 ttgttcttaa gatatttaag cgtaaatatc taaaccacta gagctagaag cttgtggagc
    25261 ggaggcttga gagacacctt ccataccttc gatgagttca ttcatcaatg cctcgtttgt
    25321 gtccatagat tttttcaaaa ctgaagtatt aacagcagtc attaaattaa cattacccat
    25381 agaaacatct gaaaccatac atcctccttt tagattgagt cttaagactt tatttaaatc
    25441 ggatgatatt tttaaaactt aatatttttt actaaacttt ttaaaatttt tcaaggaagc
    25501 caatatctga aattaaaaat cataaatttt taagataaaa
//
LOCUS       DARGEX010000009        24494 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.009, whole genome shotgun sequence.
ACCESSION   DARGEX010000009 DARGEX010000000
VERSION     DARGEX010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.009"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            91..405
                     /locus_tag="SF010_000328"
     CDS             91..405
                     /locus_tag="SF010_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG8229293.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            408..1103
                     /locus_tag="SF010_000329"
     CDS             408..1103
                     /locus_tag="SF010_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229294.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DFLRLLRIYLYGICFDVQILFSSYVYDKISFQNNEKNIDQDGDLIIIDKKFAILPLCK
                     EINTYNLKIENEIHELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            1103..1594
                     /gene="fldA"
                     /locus_tag="SF010_000330"
     CDS             1103..1594
                     /gene="fldA"
                     /locus_tag="SF010_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG8229295.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(1640..2170)
                     /locus_tag="SF010_000331"
     CDS             complement(1640..2170)
                     /locus_tag="SF010_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229296.1"
                     /translation="MSKITLILSFFITLFMSACTNTTFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLKNKIINQIVSFFYF"
     gene            complement(2176..2886)
                     /locus_tag="SF010_000332"
     CDS             complement(2176..2886)
                     /locus_tag="SF010_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG8229297.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2935..4740)
                     /gene="selB"
                     /locus_tag="SF010_000333"
     CDS             complement(2935..4740)
                     /gene="selB"
                     /locus_tag="SF010_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG8229298.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFIVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENYEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQLYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(4737..6059)
                     /locus_tag="SF010_000334"
     CDS             complement(4737..6059)
                     /locus_tag="SF010_000334"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG8229299.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELIEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEANIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            6137..7798
                     /locus_tag="SF010_000335"
     CDS             6137..7798
                     /locus_tag="SF010_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8229300.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAENLSVVRK
                     DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDEDKIKTLYCCADCKAKVMIKAMIN"
     gene            complement(7791..8600)
                     /locus_tag="SF010_000336"
     CDS             complement(7791..8600)
                     /locus_tag="SF010_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8229301.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(8597..9892)
                     /locus_tag="SF010_000337"
     CDS             complement(8597..9892)
                     /locus_tag="SF010_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229302.1"
                     /translation="MLNYVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            10059..10661
                     /gene="rdgB"
                     /locus_tag="SF010_000338"
     CDS             10059..10661
                     /gene="rdgB"
                     /locus_tag="SF010_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG8229303.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(10692..13163)
                     /locus_tag="SF010_000339"
     CDS             complement(10692..13163)
                     /locus_tag="SF010_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG8229304.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMITYIKSDLVLYGVSLVFLLGFALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYIALVLIITLSVVVHLITHFIENTQNHPK
                     ATVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSIRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(13163..13732)
                     /locus_tag="SF010_000340"
     CDS             complement(13163..13732)
                     /locus_tag="SF010_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG8229305.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(13742..14440)
                     /locus_tag="SF010_000341"
     CDS             complement(13742..14440)
                     /locus_tag="SF010_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG8229306.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLVPLRFVGNILQFKFEE
                     AGEEFKRFTTNTIMGFGGLMDMASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            complement(14485..14928)
                     /locus_tag="SF010_000342"
     CDS             complement(14485..14928)
                     /locus_tag="SF010_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG8229307.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            complement(14942..16261)
                     /locus_tag="SF010_000343"
     CDS             complement(14942..16261)
                     /locus_tag="SF010_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG8229308.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMS
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAAASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            complement(16271..17335)
                     /gene="mqnE"
                     /locus_tag="SF010_000344"
     CDS             complement(16271..17335)
                     /gene="mqnE"
                     /locus_tag="SF010_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG8229309.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            17479..19827
                     /locus_tag="SF010_000345"
     CDS             17479..19827
                     /locus_tag="SF010_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8229310.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFNNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDNKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            19832..21628
                     /gene="glmS"
                     /locus_tag="SF010_000346"
     CDS             19832..21628
                     /gene="glmS"
                     /locus_tag="SF010_000346"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG8229311.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGNEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            21631..>24494
                     /locus_tag="SF010_000347"
     CDS             21631..>24494
                     /locus_tag="SF010_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG8229312.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGMQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQ"
BASE COUNT         8606 a         3338 c         3865 g         8685 t
ORIGIN      
        1 tattgataat aaatttcaaa ataaatttag tttttttata ttataataat aattatcaaa
       61 atatatttta aaaatcacaa aggagaattt atgtcagttt tggttattgg tgcagatgaa
      121 atcactccta ttagagctgt tttacatgat ttaggtgcta aaaaaataga acactgggat
      181 gcgcgtaatg aaaatagagt taatcgcaag ccgattcctt gtgatacaga atgtatagta
      241 atgttaacaa gctttttaaa tcataatact atgaaaaaaa tcaaaaatga agctaaaaag
      301 cgtaaaattc cattagtttg tgcaaaaaga agtgtaagtt gtgtgtattg tgaatattgt
      361 aaaattttta atcttaataa agaattttct tgctataaag gttaaagatg ttatttggat
      421 ttgatgataa gcgagaattt ataccgcaaa tttatcgcta tttaaacaat caagagctta
      481 tgttgacttt tttaactcaa tataatgcga gcgttgatag cgctctaaaa attcctcttt
      541 catatgcaaa aaataccaag agtttaaaaa tgatatttgg aaatttttta catgatataa
      601 tgcatgtttc atttggtaag attcaaaata taaatatcaa gcttaatgca tacgcttttt
      661 actttcaaaa aagaaaaagc ttgattttta atactaaaat atctaagaat gtcgattttt
      721 taagactttt aagaatttat ctttatggca tttgttttga tgtgcaaatt ttatttagct
      781 cttatgttta tgataagatt tcttttcaaa ataatgaaaa aaatatagat caagatggtg
      841 atcttattat aatagataag aaatttgcaa ttttaccact ttgcaaagag attaatacat
      901 ataatttaaa aattgaaaat gaaattcatg aattattgaa tttaataaaa gaaaacaatt
      961 ttgaaaaatt ttatattgtt tgtccgcgta acaaaaattt cacacatttt attgaaataa
     1021 aacatttttt gtgtgattta aacaaaacta tgttaaaatt agttccgtat aaaatatcaa
     1081 atcaaattat aaggagaaaa taatgtcagt agcagtaatc tatggtagtg ctatgggaaa
     1141 tacagaagga gcggctaata caattgcttc aaaacttgga attagcgatg tttttaatat
     1201 ctcagatatt gatgcggcta aaatgaattc ttacgataaa ttaatttgtg gaacttcaac
     1261 ttggggaagt ggtgatttac aagatgattg ggatggtttt gatttttcag ggcttagtct
     1321 cggtggaaaa accgtagctg tatttggtat gggtgatagt gaaagttatt ctgatacttt
     1381 ttgtggtggc atgggtaaat tagctcaaaa tttaaaagat gcaggcgcaa atttggtagg
     1441 agaagtttca actgatggtt atacatttga agcaagtgat gcggttgtag atggtaaatt
     1501 tgttggactt gctcttgaca atgataatca agaagatcaa actgaatcaa gaattgatgc
     1561 ttggatagaa caaatcaaac cttattttgc ttaataattc ttaaaatcaa gagtttttat
     1621 actcttgatt gtctttttct taaaaataaa aaaaactcac tatttgattt ataattttat
     1681 tttttaaaga taattgacag cgttctttat ttccaagata agctgttctt gcaagaagac
     1741 ttgttttttg agaattgtga tttttagagt tgatttgtaa attaacttgc atagtatagt
     1801 agttttctac catccattct ccatcgcttt ccaaaggatc aaaatcataa aaaaatcttg
     1861 ctgaagttgt gattttttga gcataagaat gctttttcat atctacaaga ttgattaaaa
     1921 tttcataatc tgcattctct tttacttctt ttaagcctaa atttttaagt tttaaagcca
     1981 aatctctatc tagagtagtt tgaagttgac taggattttg aaaggaaatt ttaaaacttt
     2041 gttgtttttg tgatctgata aaaatgcctt cattgcttgt ttgaataaag ctttgtgtga
     2101 aagttgtatt ggtgcaagca ctcataaaga gtgttataaa aaagcttaaa attaaagtaa
     2161 ttttagacat taggtttatt taataatagt tggagtagcg ctaagaccta atgagcgata
     2221 tttttcatat aaggaaaaaa cttcttttaa ttctgcatcg cttacttttg gataattttt
     2281 gatatttgca tcatagtatt tgtttaaaat tgcgattttt tctttatcat tttttgcttt
     2341 ttttgcttct ttgtagatta gagcggattt ttcaaaagca gattttccat gtactggagt
     2401 taaaatataa ttaacttgat agtttttaag ttcattatca atttgagcta aatgttctct
     2461 acaataaggg cattcaggat ctgaaaaaac ataaattgcg ggtttatttt tatctcctaa
     2521 agctattacc atggtttctt tttgtgctac agctttagca ttttttgtaa aattttctct
     2581 tgcttcttga aattttttca tttcatattc ttgagcataa gaaattcccg ttttcaagtc
     2641 gataagatca ggggtaataa gactatcttt tgtaaaaaga atgttttctt gtttttgtcc
     2701 atttaattca acgcttacaa taacactttc aaaacccgta ttaccaacct tttgacgatt
     2761 tgatacacta acggtagcat ttggaaattg tgctttaatg ctttttgaat aaaaatcact
     2821 aatttctgaa ttacttgcag caaacaaaga tgctgaacag gcaagaatta aacttaattt
     2881 tttcatagtt tataaatcct ttaaataaat tatgtttaat tctataatga ttttctaaat
     2941 gtttgttaaa aatctttttt cagcttcttt gcttacttga ggaaatttgt ctaagtattc
     3001 taaataagca atagcatatt ttcttgaaag attgaaatat tctttcatac tttgcacatc
     3061 aagactttga ttttttaata aatttaaaca ttcttgcata agtttttcaa gagcttgttt
     3121 ttctataaaa agattgtgtg aaagtcttac aactaagcct ttttgggtaa gttttttgag
     3181 tatattatct ccgctttttc tatcaagttc taaaaaatca taaagattat aaggagcttc
     3241 gggtttaata ccttgttttt ttaaaatttc atataattga ttattatttt tttcttgaag
     3301 tttttcaaaa tctatgcctt ttttaaaata aattccattt tgaaaatcca ataaatttga
     3361 catctcttta agcccgagtt cgcaaaaatt ttcacttgcc caagtaatcc ttaaagctaa
     3421 agaatgtgct gaaagcatgg cataaggatt tttttcaagt atgaatttga tgaaattttt
     3481 aatttcttct agactttgta aatgatatac attaagattt ttttcatcaa caaatacttg
     3541 atttaattct tttgctaatt tcaatgcttt ttgatgagaa agtttaaatc tctgataact
     3601 tgaaagcaag ccaaagccgt atttgtgtgc gtcttttaag aaagaaaaag ccgctttaaa
     3661 atctttattt ttcaaaaaca ttaaaaattt atttttttgt tcttttttta aaggttcgct
     3721 taaaggattt aaaaccttac caccgcctat aacacgattg ttttgtaata aaataaaagc
     3781 ctcatcaaaa cttaaaaata catttttatc aaaactaaaa tgcacaaaaa attcatcatt
     3841 ttctagtttt tttaatatat ttattttaca ttctatttgt cttgaaccca cacaaaaaat
     3901 cattttgcta ttttgtaaat tttttgcttt aactaaagca tcgcattctt taaaggcttt
     3961 aaaataacct tttttactta gtaaataacc ttttttcaac tctttataat cacaatttaa
     4021 acttaaagcc acacggttgc aagctttgat ttgctctaga ttggtatcgt gattttgtat
     4081 atttttaaca atgagttctt tttgagtgtc taaacagatg attttttcat ttaaagtgat
     4141 acttccttca ttcaagctgc ctgtaacgac agttcctata ccttttagag aaaaaactct
     4201 atcgatataa taatgaaaaa tcagttcttc ataattttct ttgttttcta tggtataaag
     4261 ataatttttt aattcttcta tgccttgatt attttttata ctggtatgaa atacttttaa
     4321 aatgggataa tctaaatttt ttaactcttc taaaatttct acactttttt gctctatgtt
     4381 ttcacaaaga tcgcatttgc taagtactaa aatgatattt ttaatatcaa gaatttttaa
     4441 aatttctaaa tgttctaaac tttgttcttt taaaccctcg ttaatatcta cgataaataa
     4501 acaaacacta aagccaaaag ctccacttac catagtttta accaaatctt tatgtcctgg
     4561 aacatcgata aaagaaatgt ttttatcttt taatttaaga tttgaaaaac ttaaattaat
     4621 ggtgatttgt ctttcttgtt cttcttttaa actatcgcct tcaaaaccat ttaaagcttt
     4681 aatgagtgaa gtttttccat gatcaatatg tcctgcggtt cctataataa cagatttcat
     4741 aagttttcca tttgattaat tgtaagaata agtttttgaa gttcattttc tcgtatagtt
     4801 ctaaaatcaa gaacaaattc atcattttca atgcgtccta tgatattttc ttttctaaat
     4861 cgagtttgta gttttaaagc atctccttga aaagttagta tataagtatc taaactttta
     4921 tcaggcatag aacctcctcc tactaaactt ttgctttttt tgagttgggt ttgaaatttt
     4981 aattcttttt gcactcttaa agctttttct tctataaagg ataagtcatc atttaaaagt
     5041 tttaaggtaa taattttttc ataatctttt tgtaaataag cttttaagct ttcatttaaa
     5101 aaagataggg ttaatttatc cactcttagc attcttaaaa gttgattttg tttaagtttt
     5161 tctatgagtt ctttttttcc aagtataatg cctgcttgca cactaccaaa aagtttatct
     5221 ccactaaaac ttaaaatatc acattcttgt acgagttttt tgattttagg ttcattttta
     5281 atcagctttt catttaaatt ttcacaccag ccagaaccta gatcataata actcaaaagc
     5341 cctttttctt ttgctagttc atgtagatct tttatatttg cttcactatg aaaacccata
     5401 agagcgaaat tagacttgtg ggtttttaaa attagagcgg tattttcact gatagcttgt
     5461 tcatagtctt ttaagtgtgt tttgttgcta gttccaactt cgcaaagctt tacacctgca
     5521 gcttttatca cttcaggcac acgaaaactt ccgccaattt ctataagttc tcctcttgag
     5581 cttatgactt ccttatcata acaaagagaa ttaagcacta aaaaaactgc cgcagcgttg
     5641 ttattgacta ctaaagcatc ttcgcattca aaaagcattt taagtttttc caacaccaaa
     5701 gcatagcgag agcctctttt tccattttct aaatcaaact ctacattaga ataattacaa
     5761 atgatatctt tacacgcttc ataaagttct tcatggatta cacttctgcc aaggtttgtg
     5821 tgtataacca ctccacttgc attgatcaca ctttgtaaat ctttgcggta aaaagttttg
     5881 atttcttttt tgatttctaa aagtagttta tctttagaaa tttcatcttg ggaaaaattt
     5941 tcttttagtt ttgcgacaac ttttttacaa aaaaatgctt tgatataaaa aggataggat
     6001 tttaaactct catcttcaat aagagtgtta atctgtggaa aagttctaaa tttgttcatc
     6061 ttaagcctta agaaaatatt tggttatttt aacatagaat ttataaaatg atgttttaaa
     6121 gagattaagg aagacaatgc aagattttgt ttatataaaa aatgatgttt taatcccttt
     6181 gcctgatgct attgaaattt tagatcaggc aaatgataaa gaagcattaa tttgcaatga
     6241 taaaaatcaa aaagcacaaa tttatgcccc agagattaac ttttatctta aaaattctca
     6301 agatgaaatt ttagagcaaa gtaaaaatgt tttaacgctt tatgaagcaa gggctagcgt
     6361 ttatgattta gggcttgatt tagaacaaag caaagaagtg caaaatcgtt tgattttggc
     6421 agatagtgat actcaaactg tagagttttt aaaagaacat ggatttaagg ttattgcttt
     6481 aagtagtgca gaaattttag ctgtttttgg aagtgtgggg gagctttgtg ctgtggttaa
     6541 aaatcaaggc gaagaagtgg aaatagattt tgatttttta ctttttaaag ctgaaaattt
     6601 aagcgttgtg cgtaaagatt ttacaagaca aagtggatgt tataatcttt taaattttga
     6661 aaatcttgaa gcattgttag agtttttgca aagcaaaagt ccaaaatatc cttataaaac
     6721 ttatattagc tataatgcta gcgtgtgtca ataccatgaa agacgcagtg agcattgtgc
     6781 aaaatgtgct gaaatttgtc ctactgtggc gattttaaaa gatgatgaaa aaaagcattt
     6841 agaattttct caagtggatt gtttgggttg tggaggatgt attagtgtgt gtcctagcgg
     6901 atcgcttgat tatgctccta tgccaagaga aagttttttt accctttgtg agttttataa
     6961 agataaaaaa attttaatca ttcctaaaaa aatgtcttta gaaaatttaa atcttgcttt
     7021 accaaaagat gttttaccct ttatgataga gggtgaaaaa tggctttctt ctatgcattt
     7081 tttaacactt ttgcaaaata gtggtgcaaa tttggttttt tatacggact ttgtatctcg
     7141 tggtagcaat gaagccatta tgcttttaaa tacttttttt gagagaaaat ttcaaaaaaa
     7201 agctattttt gttgctaaag atgaaaaaga attgcaaaat gttttaaaag agcaagaatt
     7261 catacaagat ttaaaatatg attttcataa taacacctta actacaagag aaaattttgc
     7321 caaaagaatg caagaaatga taaaaaatga agattttggt agtatagaaa gtggcgaatg
     7381 gttgcgttat ggtaaggtag aaatcaatcc taatacctgt acgctttgtc tttcttgtgt
     7441 gggtgcctgt aatgtaggag ctttaatcgc tgataaacaa gaaaatgctt tgaaattcaa
     7501 tgcttctctt tgtacgactt gtgggtattg tgagttaagt tgtgctgaaa aagatacttt
     7561 aaaattattt cgtagtggaa tggagtttag agcttcttat tttgaatatc aaaccatggc
     7621 aaaagatgag cttttttcct gtatagaatg cggtaaagaa tttgcgacca aaaaagctgt
     7681 agaaaaaata gccaatttaa tgaagcctaa atttggtaat gatgaggata aaatcaaaac
     7741 actttattgc tgtgcagatt gcaaggcaaa agtgatgata aaagcaatga ttaattaaga
     7801 tcaagaagct ttttcatcca cagcatagct ttagatatga cacttccatg agtttcattt
     7861 ttaaaaagtt taaaatgagt tttacaatta gtttctttgg atattttttc gctaagtttt
     7921 tgagcattga gcttagctac acctttgata atacttgaat ttgtttccaa tgaacctaat
     7981 ccgatgtaaa ttttagggca agtttgtaat tttatgatat taggtaaaaa ctcactatta
     8041 tcccaccata aagaaggtga aataataaaa taatgactaa aaatcttact atcataaaga
     8101 agtgtatcaa tggcaaaaag tcctccaaaa gaatgtccaa agagaatttg atggctaaaa
     8161 tcaataggat acattttgtt gatataaggg atgagttggg ttattaagaa atttctaaat
     8221 tctttactac ctccaccttg tttatttaaa tttgttgtag gcgtataatc tttagtgcgt
     8281 ttttgtgtat caaaagctaa attattatca taacctattc caataattaa aagattttct
     8341 ttgacaggag tgttgaaaag atttaaaaaa agaggaaaaa aggcatttcc atcgagtaaa
     8401 taaatgattt tatatttata atttgagttt tcattcttgt ttttagctat aaaaatttta
     8461 tatattgtgc cattataatt aaatttgaca ttttctaaaa taaagttttg ttttgcttgt
     8521 tttgagagct tgggtatctc tagacttggt tttgcaaaag ctagaaaaaa agaacagaat
     8581 aaaaataata tttttttcat aatttgcctt ctaattcttc tttacttgta agtttgctat
     8641 caaatttaac aacaagattt ttagagtttt tataaatatc tacaacccct aaattttcac
     8701 caaaagtact gaaatttaaa ggcgtttcta aaggtagata aaggttttta aaatcagctg
     8761 gattttttaa gaaaaataat gccacaagcc aaattagagc taaaattact aaaataatag
     8821 ctaaaagatt taaggtatct agatgtaaaa atatccctcc gataatacca cctataaaac
     8881 ttccaccata tccaaaagca ttaaataacc ctaatgctgc acctttttca tgaactttac
     8941 aaaattttga tgcacaactt tgcataatag gttcgtgtaa attaaaacct ataaaaaaaa
     9001 tcacaactgc tatgataaaa aaatcaatag aattactaaa agcaaaaaaa agataagaaa
     9061 gtatgaaaaa aacaattcct aagagtaaaa tttgtttagc taaacctctt ttttcgccta
     9121 aacttccagc aaagcccata gcgataaaac ctgctaccat agaagcgcta taaacaatcc
     9181 aaagtttatc agaagcaaag cctaaatgtt ttactagaat aataggaata cttaaaaatg
     9241 ctatactcat aagcattttt tgcatgaaat tagtaagatt cataagggct aaattttttt
     9301 gtttaataag atgaaaaaaa ggagtttttt cattttcatg agtgatttta ttttctttag
     9361 gtacaacggt ataaagtaaa attatacata aaagagacaa agccgcacta agatcaaaaa
     9421 ggctagataa accccatttt gcactcatta gaggagaaat gaccatagag gctgcaaaac
     9481 taagtcctat aaaagaaccc attaccgcca tggctttacc acgattttct tctgtgataa
     9541 aatcacttat cattgccgta gctactgctc caatagctcc tgcaccttgg agcattctcc
     9601 ctaaaagcat ggtgtaaata ttttccgcaa aagagcagat taaagagcct attataaaaa
     9661 taatcagtcc aatgagcatg gtttttttac gaccaatttt atcacttaaa atcccaaaag
     9721 gcatttgtaa aatcatttgg gttaaggcgt aaacaccaac taaaagtccc actaaaaatt
     9781 cattagcacc ttcaagtttt aaagcataaa gacttaaaac tggcaaaact ataaaaagcc
     9841 caaaaaatct tgttccaact atgaaagata agggtaagac ataatttagc attatcaatt
     9901 tcctattaaa tttgaaattt aaattaggat aattttacta tgaaatggat taagcattga
     9961 ttaacatcgt tttatcattt gatatttaaa agctacgcac aaggataaat tttataaaat
    10021 catatttttg tttttgatat tattttggag cttttgttat gaagattatc ctagctacga
    10081 gcaataaaca taaagtttta gaacttaaag aaattttaaa agattttgaa atttatgctt
    10141 ttgatgaagt tctaatgcct tttgagattg aagaaaatgg aaaaactttt aaagaaaacg
    10201 ccttgattaa agcaagagcg gtttttaatg ctttggatga aaagcaaaaa aaagatttta
    10261 tcgctttaag tgatgatagt ggcatttgtg tagatgtttt agaaggaaat ccaggaattt
    10321 attctgctcg atttagcggt aagggcgatg ataaaagtaa ccgtgataaa cttgtcaatg
    10381 aaatgataaa aaaaggtttt aaacaaagta aggcgcatta tgttgctgct attgctatgg
    10441 taggtttgat gggggaattt agtacgcatg gaaccatgca tggaaaagta atagatacag
    10501 aaaaaggtga aaatggtttt ggttatgata gtctttttat tccaaagggt tttgataaaa
    10561 ccttagccca gcttagcgtg gatgagaaga ataacatctc tcatcgtttt aaagccttag
    10621 agcttgcaaa aatcatttta aagattttaa acaaaggata aaaatgaaaa attttttaaa
    10681 atatatagct attattgttt taatatatgc tctttatgtt ggtttggaaa cttggttttc
    10741 ttagaataaa tagtgattaa aaagcttggc aataagaaca aacttccact taaaagcaaa
    10801 atcattacaa aaacggttaa aattccaaaa taaattgttg gaataaaatt gctactcatc
    10861 ataacactaa aacctaaaac tatgctaatg gtagtataat aaagtgccga acctatacta
    10921 aggtgagaaa tcataatggc ttcttctagg cttttgtttt taatttcttc cctaaaacga
    10981 taaatataat gtatagcatc atcaacgcct atacctatag caatagcagc tatagtaata
    11041 ctcatcatat ccaaaggaat acctaaaagc cccataagag caaaaaccac acttaaagga
    11101 ataacattta ccaatatagc cgcaactgaa aattttaaat ctctaaaaac aatgataaaa
    11161 agtataaaaa tagctaaaat tacaaatata agagtatcaa attgcgatga aaaaagactt
    11221 tggagcatat tgttataaag taccattata cctgtgattt gaacttctac tccatcattt
    11281 tttacaagct cgttgagctg ttttttaaga tctattaaaa attcattacg tcttaaattc
    11341 ggatcagaat caacaatacg tatactaaat cttaactcgt tattctctat acttacaaaa
    11401 ggtgaaagca agtcttgttt aaatttagca ggtaaattct catttaaaaa cgcaagagca
    11461 aaatcatcta actcttttcc atcgttgata tttttcccta gggttaaaag actattaaga
    11521 cttaaaatcg agcctacaaa ttctttattt tctaaaaatt catgaacttt ttttgcaatg
    11581 cgtgtttttt tagagtcaaa ccaataagtt tcttgtgtgg ctaaattttc aaattcgctt
    11641 tcaaaactat caagagtatt gcttgtattt tgatcgtttt tattatttgg aaaacgaatg
    11701 atgacttcta aaggcaaggt tccacctaga tttttatcaa taaccaaaag tccttttttg
    11761 atttcactgc catctttgaa ataattgaca aaagaatttt caactctgag ttttgaaatg
    11821 cctattaaag ctaagattat agcaagaact gaaattccat aaatcatgcg acgcttttta
    11881 ggatcaagag cggttttagc acaaaaggct aaaagattaa atttaaactc ttttttatga
    11941 tagttttttg gttttaaaag aactaagata cttgctaaaa ataaataact aaagataaga
    12001 gctaaaccta tacctatact catcataata ccaagtttta tgataggttc gatatttgaa
    12061 agcattaaag aaaaaaatcc tatcatcgtt gtaacaatgg cataaaggct aggatttgct
    12121 ttggctagta aggtttcaag cactatgcgc tcaactgtag ctttgggatg attttgggta
    12181 ttttcgataa aatgcgtgat caaatgaaca actacactta aggtgataat taaaaccaaa
    12241 gcaatgtaat ttgatgaaat aactgtgatt tgaaaattta aaagtgcaaa aactccacta
    12301 gctgcactta agcttataaa acaaataaaa agaggtaaaa aaacaaagcg ccatgaacgg
    12361 aaaaaataat aaagtgcaaa tcctagtaaa aatacaagag aaacaccata gagtacaaga
    12421 tcagatttta tataagttat catatcatca gcgatcatgc ttacgccacc aaggtagagc
    12481 gtatctttat ttttttcata atttcgaact atgcttttaa tagtatctag actttgtttc
    12541 gtgataactt tttgcttgtc ttgatgtttt tttatagcaa gacgaatttg atctttttct
    12601 ttttcatcgg tagcaagatc gcgtttttct acaagatcat tataaactgt atcaggcttt
    12661 aagtaaataa taagccctgt tacttttcca tcttttgaga tgatattatt tttataaaag
    12721 ggactattta aaatttcatt tcgggctttt gtgcggttta tatcttggct ttctatgttt
    12781 gggatatttt ttaacagttc ttttaaatcc gtattttgtg aactttgaag caaaggggca
    12841 ttgatgatgc taaaaacgcg ctctactaaa ggggcctttt ctaattcttc atgaagtttt
    12901 tttaatttgg ctaaattttc atttgaaaaa ggtttttcat catagggttt gaaggctaaa
    12961 agtaaaaaat tatcactttt ataatgtttt gaaatttctc taaaagtttt taaatctgca
    13021 tcatcttcta aaagtaaact ttcagcactt gcatctacgc taagcttaaa agcaaaaaag
    13081 cttaaaaaca ggcatataaa caaggttcca aaaaaagtac tttttggacg agaaataaaa
    13141 aactttaaaa gctttgcaaa cattattcta tgacaatact ctcaagtttt tgaagtaggg
    13201 catcaaagcc ttggttggct aaaatatctc caaattgtga tctataagtt tgtactatac
    13261 tcacacctaa aacatccaca tcataaacaa gccagttgtt attatcattg taaaatttga
    13321 aaatgatatt tttttcttcc ccatctacta ccatagaagt ggttaaaaaa tagcgttttt
    13381 cattttttaa ctcaccattt ttgaccttta aaacctgatc tttataaaga ctgagtttat
    13441 cggtaaaact ttttttaaga cttgcttcaa aggctgtggt aaatttttct tgttcttttg
    13501 gatttaattt agaataattt ttcgaaagac tgagttttgc catgagttta taatctatta
    13561 tgctatcaaa aagtttaaaa attccatcag cagcttgttt tttgtcttct ttgctatctt
    13621 gtaaaagttt taagcttgca tcaatgtttt tttgcatagt actagaaatt tcatctagct
    13681 gtaaggcaaa agcattaaaa aataaagcca agattaaaaa tatttttttc attattttcc
    13741 tttatttgct aagttcattg cgtctttgct cgtaagcatc acgcaagaat ggatataaat
    13801 taggcgtgtt gtgataaatt tcatcaattt catcaagtct aaaactaagt tcattaccaa
    13861 atccataagc acttatagct atacttgccc aagtaggatc aatgtaagca gtaaaacttg
    13921 cataccaagt tgcaggtaaa gcaagagtat ctctaagatt actagggccg agtataggta
    13981 agacaatatg aaaaccgctt cctacacccc agtgagccaa aacggttcct aagtccgcgg
    14041 gatgtttttt aagacccatt tttgatgcca tatccataag tccaccaaag cccataatgg
    14101 tattggtggt aaatctttta aattcttctc ccgcttcttc aaatttaaac tgcaaaatat
    14161 tgcctacaaa acgcaaagga acaagtaaat tatcaaagaa atttcttacc cctaatctta
    14221 taaattcagg agtgatagtg ttatagccct taagaacggg acgcaaacca taatcataca
    14281 aagccacatt aaaacttgtc atagctttgt tatatcctga aagtggatcg tttacttgat
    14341 agttttggta ttcttgttcg aaatcatcta aattttgttc tttagcaaaa gcaaaaatag
    14401 caaaaaaaat taaaataaaa gatataaatt ttattctcaa gcaaaaactc ctaaaaattt
    14461 taaaagtaaa attatagcaa atttttaatc aagatttata tcccagtaaa aatccaccca
    14521 ttcagtagct tcttttactt taaaatcagg ctctaaaaga gcggtttttt tgtaaaaaat
    14581 ggttgtaatt ttaagttcta tatgaggaaa tttttcaagc aaaacttttt ttatttctgc
    14641 taaactttct ccactatcta ctatatcatc aatgagtaga atttttttgt gcttgcttaa
    14701 atcgggaatg ttaaaaattt caatagtatc aagttttttc gtattatcgt aatgaattga
    14761 gtttaaagca aaaagttgac gcgtttttaa agccactgct aaagagtgtc ctaaactcat
    14821 cccccctctc gctatagcta aaagtgcatc agggttaaaa tcttctttaa tttctttagc
    14881 aagaattttt acatcttctt taaattcttc ataggagtaa aatatcatta tatatcctta
    14941 tttattgtag tgccataagt aaaaaattac ccaaagataa taaacttaaa actataatgc
    15001 caagattgat tttatcccat tcgcgtttaa aaattcttac aagtaaataa gaaagaaaac
    15061 caaaagcaaa acctgtggtg atggagtaag taaaaggcat catgatgata gtaaaaaagc
    15121 ttgctgcagc tatagcacta tctttaaaat ctatattttt aacttccata aacattaaaa
    15181 ttccaaccat tacaagtacg gggtatattg cgtttgcagg aatggcttta aaaagtggca
    15241 gtaaaaaaag tgtaaaagca aaacaaatag ctacaactaa agctgtaagc ccagttcttc
    15301 ctccgctttc aacccctgta gtgctttcaa caaaggctgt aactgtagaa gtgcctgtca
    15361 tagctcctaa ggctgatcct gttgcatctg ccattaaggt tttgcttagt tttttttctc
    15421 catttttggg atcatcaaaa atctttcctc tttcacccac acctgtgata gttcctatgc
    15481 tatcaaaaag ttgagtgata aaaaaagtaa gaattatagg tatcatagta atatttaagg
    15541 cgcttttgat atcaagttgt aaaaagatgg ctcctaaacc attttccatg ctaaaatttg
    15601 gccaagaaaa gatttgcaca ggaaaacttg cattgtctaa atggaaaatc caagcaataa
    15661 tagagcttgc taataccccc aaaataaaag ctccgcgaag ttttatagcc caaaaaaaga
    15721 tgattaaagc tagagtaaaa attccaaaaa gcacatgagg gcttttgaaa tttcctatgc
    15781 tgactaaggt atctttatta tgcattatca cacccatttg acttaagcct aaaaatgcaa
    15841 taaaacaacc tatgcccgca caaattgcaa ggcgtaaatc ttttgggata ttgcggatta
    15901 cccaaaggcg aaaatgcgta aaagaaagta tgagaaaaat aatacttgaa ataaaaacag
    15961 ctcctaaggc actttgccaa gctatgtttt gacctaaaca aaccgcaaag gtaaaataag
    16021 catttaaacc cattcctaca ctcatagcta caggagtatt ggcaaaaaaa gcattaaaag
    16081 cacttgcaac tattgtaatt aaagctgttg cggtgattaa agcttctata gacattcctg
    16141 tatttcctac tatgctagaa tttacgggga taatgtaaac catagctaaa aaagtagtaa
    16201 gtcctgctat aacttcggtt ttaaaactcg tattgttttc tttgagttta aaaaagctca
    16261 ttttttctcc ttagtaggtt tttagctcat tgtataaact atcgcgttct acaggaataa
    16321 gatttgaagt ttttatcata tcgataaaag tttttaaact tgtgcctttg gcggactttg
    16381 caccacctgc actttgtata ctttcttttt ctatagtgcc gtctaaatca ttagctccaa
    16441 attcttgtgc taccatggct aaatttaaag tcattgttgc ccagtaagct ttgatatttt
    16501 tgatattatc aagcactaaa cgagaaatgg caatggtttt taaaatttct tcactatcca
    16561 tgattttatc agtttgtata aagctattat ccctttgcca aactagaggg ataaaagcat
    16621 tgaatccacc ggtttgatct tgaagatcac gcagtcttaa catatgatcg atcctgtgat
    16681 gtctttcttc tatatgtcca aaaagcatgg tagcattact ttgcttgctt ttttcatgcc
    16741 aaagtttatg aattttaagc caattttcac tgctaacttt tccatgacaa attttcttac
    16801 gcacttcttc atcaaaaatt tcagctccac cgcctggcat ggaatcaacg ccgtattcaa
    16861 gcattttttc tatcacttct tcataactca ttttaaaacg acgatgtaaa aaatcaattt
    16921 cagcagcagt catagctttt acatgaagat taggatattt ttcttttatc attttaaaaa
    16981 tttctaaata ccattgccaa gttgtatctt tgttgtgagc tgaaacgata tgcacttctt
    17041 tggtttctcg ttttacagtt tcatcgacga ttttcatgat ttcttcatga gtcatcaaat
    17101 aaggattagg attttttcgg tgcgctgaaa aggcgcaaaa tttacaggtg tctgcacaga
    17161 tattagttgg gttgatatgg cgattgatat taaaatagac tttttttcca tgaagtttag
    17221 tgcgtttttt gtgagcgtat ttgcctaagg taaaaagatc tagatcccaa agtgcattgg
    17281 cttcttcttg gtttaatctt tcttcatttt ctagtttggt gattaaattt ttcattttaa
    17341 ttttactctt ttgctgtttt taaataaagc attataattt ttgcttactg aaaaagagtt
    17401 tatagaaaaa gccaaaataa aagatatttt tgttaagatt attattaaaa tattaaaatt
    17461 ttaaagagag tagaaatttt gttaaataaa gaattagaaa tttttaaaaa aaatcttagt
    17521 tcctataccc aaagttgtag aaaatttttt cttaagcaag gggcgtttag cttatatcat
    17581 tctaaaaata tggataattt cataaaaaaa gcttatgata tagttcttaa agattatttt
    17641 gatgattttt cacctccaag tgataatatc cctttttgtg ttttagcaag caaagcatat
    17701 gcaaataata gtctttgttt taatgaaagt atttctttga tttttgttta taaagatatt
    17761 aaggcttttc atttaaaacc tatgattaag gcttttatcg aaattttaaa tgatgcgcat
    17821 ttgcaaattg attcggttat cttagaattt aatggacttt ataatgctag caatgagctt
    17881 aagacttcta taatacaaac tcgtttcata tgtggttcta ggattttatt taaagggatt
    17941 aagacaaaat ttgagagtat tttaaaagaa aataaaaatg attttgccaa gcttttgcta
    18001 gaaaatttta aagaatttga cattccattt ataaagcaag aatttaatat cttaaaagat
    18061 tttggcggat taaatcattt aagatcctta gagagtttgc ttgttctttt taagacttct
    18121 ccaaaaaatt atgctttaaa ttttatagat gaaaaaaatt taagcgagtt gcgtttagct
    18181 ggagattttt tactttcttt aaaatcagcg atgaatttat taagtgctaa agatgaggat
    18241 gaatttttac ttattaatgt tcatgatttg agtgaattaa tgtataaaaa agctaaaaaa
    18301 cattttggag caaatgagtt gttggttcaa aaggctttgc aaagtatgca tactataggt
    18361 ttttatacac actttttagc aaagcaaatt caagatggat taaatcatac tcttaaacaa
    18421 gaatataaat ttaaaactct tgtggaagtt ttagaatact tattaaaact tgaagataaa
    18481 catgttattt tcgatcttaa cttggttttt gccctaagaa gattgaaata cggtaaaaaa
    18541 gatatagaaa aagctttaat actttttgag aaaatttttt ataaaaggca tagtttttgt
    18601 gttttaaaac ttttgcttga tagtggaatt ttaaaagatt tatgtaagcc tttttggaca
    18661 gttcgttttt taagcgatga agaaggaaat tatagttttg atgagcaagt ttttcttatg
    18721 ttaagtgaat ttgaaaaata cgaagatgag cttgagatac tccaaaaact taaaaccgat
    18781 gaaaaaatga ttttaaagct tgtgatactt ttaagcgcta tagaaagtga aaatgaaatt
    18841 tctttagcag gcatatatag agcgtattgc tctaaatttg atttaaagaa tgaaatttta
    18901 gaatggggtc ttaagatatt taaaaacaat aatgccttaa aagatcttgt agaaaaagaa
    18961 gatatataca atcctattgt tgtaagtagc ttggtttcta agctagaaaa tttagaaaat
    19021 ttagagcttt tatatacttt aacttggcta aaggctaagg ctttaaatta taatgctttt
    19081 tattttagag ttcttgataa acttttagaa aatgcaaaac aaggttttga agatgaaaat
    19141 ctacttgaag aaagcgcaag aagagtaaaa aaagaattaa cacttaaaag aagtaaaatt
    19201 tttttagagc aagatgaaat tttgcaagat aaaatcatac atatcaaatc aaatcttttt
    19261 attataaaaa atacttttga agatattgtt atgatttcta aattagccaa agaaaatgat
    19321 tttaaatttt ggtttaataa tgaaacaaat cttagtttgc aaattgttgc accacttcat
    19381 tttaatattg ccattatttt aagttcttta acaaatttaa atcttatttt catgaatttt
    19441 tttgaacttt ttgataataa aatttattta agatttgaat atgataatat tatcagtgat
    19501 gagcaaaaac taaaactttg cgagctttta aattcaaatc tttctggttt taatttgaaa
    19561 aaaattaaaa agccaatcat taaaaaagat gagttaaaat tagacttaaa ctattctaaa
    19621 atgtatgcca aattaggtct taatacgaaa gatcagcagg gtttaatggc gtatttgatg
    19681 aatgttttta atgaacttga acttgtttta tgtgcagcaa aaattcaaac cataagacaa
    19741 aggacgcgta atatttttat ttttcaaaag aatgaaaaat tagaacatag cgagcaaaag
    19801 ttagttaatt tattaataag tgagtaaaaa aatgtgtgga atcgtaggtt atataggaaa
    19861 taatgaaaaa aaacaaatta tactaaatgg acttaaagaa ttggaatatc gtggctatga
    19921 tagtgcgggt atggcagtga tgcaagaagg agagctcagt ttttttaaag ctgtaggaaa
    19981 gcttgaaaat ttggcgaata aatgcacgga ttttgaaagt caaggttatg gttttgctat
    20041 aggtcataca agatgggcaa ctcatggtaa gcctactgaa atcaacgcac atcctcattt
    20101 aggacagtat tcttgtgtga ttcacaatgg tattatagaa aattataaag aaatcaaaga
    20161 taaacttgaa aaagaaggcg tgagtttttt aagtcaaacc gatacagaag ttattgtcca
    20221 gctttttgaa ttatatgcaa gaaatttggg agtttttgaa gcttggcaaa aaaccatcaa
    20281 agaacttcgc ggtgcttttg ctactttgtt agtaacaaaa aaagatccca atcatgtgta
    20341 ttttgcaaaa aatgctgctc ctttgattat cggtaaaaat gcaaataaag aatggtattt
    20401 ttcttcaggt gatgcgcctt tgataggaag ttgtgatgag gtaatgtatc ttgaagattt
    20461 aagcttggga tacgcgagta aagatgagct tgtcgtttat gaaaatgata ttttaaaatc
    20521 actttgtttt tctaagcttt caggcgataa ggcttatgca aaaaaagacg gctttcgttt
    20581 ttttatggaa aaagaaattt atgaacaaag tcgcgtgatg agtgaagttt taatggggcg
    20641 tattcaaggc aatgaagtcg tttttgatga gctaaacaat gaagatttaa gtcaagtaga
    20701 tgaaatcacg ctttgtgctt gtggaacaag ctatcatgct gcaatggcaa gtgcttattt
    20761 gtttgaaaga attgctaaag ttaaagctaa agtagaaatt gcaagtgaat ttcgataccg
    20821 tgaagcaatt ataaaaaaag attctttatt tatcgttatt tctcaaagtg gagaaacagc
    20881 agacacttta gaggctttaa agattgcaaa agagcagggt gctaagactt ttgcaatttg
    20941 caatgtggat aattctaata tagtgcgttt agcacatcta agtcttttaa ctcgtgcggg
    21001 catagaaaaa ggagttgctt caactaaagc ttttgctact caggttttaa cactttggat
    21061 gcttgctatt tttatggcac aaaaaagaaa tttaaatgtt tctgctgaaa ttaaagcact
    21121 tttgcatact ccaaattgcg tgagtgtaaa acaggcttta catgaaaaaa ttcatcgttt
    21181 atccaagcgt tatttagatg gacatggctt tttctttata ggcagagatg tgttttatcc
    21241 tttggcttta gaaggagctt tgaaacttaa agaattatct tatcttcacg ctgagggtta
    21301 tcctgcagga gagatgaaac atggccctat tgctttggct gattctaagc tttatactat
    21361 agctttaatg ccaaagcaca tgctttatga aaaaacaaaa tcaaatgttg aagagcttat
    21421 tgctagggat tctacagtgc ttagcatttc acctttagaa tttgatttaa gtgatgattt
    21481 tataaaaacc aatgagcaag atcattatat gtgtgaattt tttgaaatga tggtcattac
    21541 tcaacttttg gcgatggaaa tttccataag acttggcaat gatgtggata tgccaagaaa
    21601 tttggctaaa agcgtaacgg tagaatagaa atgaaaaaat ttttttgttt aactttagtt
    21661 tgtaaacttt ttgctttaag cgaatttgaa cttcatcata ttgataaagt acataagcta
    21721 gggtatagtg gagatactat tataataggt gtagccgatg atgcttttaa tcaagatcat
    21781 attagtttaa aggataagat tttaaagtct acttatccta ctgatacagc tgggaaacag
    21841 cttatacctg atttgaaaaa atcaacacac ggaagtcatg tagcaggtat agctgttgga
    21901 gcaaagatag gcgatagcaa accttatgga gtggcttatg gggcaaaatt ttatggagct
    21961 ggggtgtttc caaatggctc ttacactcaa attcctgata tttataattt tttcaaagat
    22021 gtgagtatta ttaataatag ctggggtatt aatttttatc cttattttaa tcttaaggct
    22081 tcaaattctg gattagtaga ttgtactcaa actaatcaag ggacaagcta taatatctgt
    22141 aatactcctt tggaatatgt tatgaaagca gataaggttg ctaatgatat gatgaggctt
    22201 agcaaggaca agggagtatt aaatgtattt gctgctggta atgaaggaat tcttagccct
    22261 gctttgcatg cgattttacc aagttatgat gaatctttaa gagcttggtt ggctgttgga
    22321 gctttggatg caaatgagat tactttagaa tcagatggga ctttaataat taaaagtcaa
    22381 ggtttggctg attttagtaa tggttttaag ggggctacga atttttcttt agttgctgct
    22441 ggagtaaata ttaataatgt tgattcaagc actaatgata agtttacaaa aaaaagtgga
    22501 acttctatgg cagcacctat ggtaagtgga acagcggcac tggtcaagca aaatttcccc
    22561 tttttggatg gtaagcaaat tgctgatata ctgttaagta cagcaaataa aaattataag
    22621 gctccaaaat ttactgttaa acaagtaacc gatggaacaa atcaacctaa atttcttatt
    22681 gtgtatattt cgcaagatcc acctaggata gaagatgaaa taaaacggga tttaaaacag
    22741 ctttacaatg gaatgcaagt tcaagttaat ggacaatgga ttgattatag tgattatatt
    22801 tgggataata gagatagtgc gcagtcacaa aaacttaata cttctactat tagttctatt
    22861 aatggagtag ttagagttga gaaagaagaa ttatttggac aaggaatttt agatgcacaa
    22921 aaggcgttaa aaggactgag tattttagat gcaaacagac tcagtgatca ggatgtatta
    22981 aaatatgagc aagaacctaa tacagcttat tatactataa acactgcagg ttatgatgct
    23041 gaattttcta atgatattag tcaaagaaaa tgggatgaaa gtactcattt atcaagtgct
    23101 attaataaac ctacacattt agctaatctt aacatagggt tatctaaaga aggtgaaggt
    23161 attttgatta tcagtggtca aaatacttat gagggtgcaa ctttaatcaa acaaggagaa
    23221 ttaaagctta aaggaaaagt taaaaataat gcttatgtag aacaaaaagc aatattaagc
    23281 ggtaatggta ttgtagggca aaatttaaac aataaaggca tagttagacc tggaaatgaa
    23341 gatttgaatg atttaaccgt gcaaggaact tatactcaag aaggagttga ttctaaattg
    23401 caacttgatt ttggtaatta taaaaattct aaactgattg caaaaactta tgatattaag
    23461 agcgggaatt tagaatatat tcctttacct aaatactata tcttaaataa gccagtgaaa
    23521 attaatttag gagatttgga aaaaagttta tcatctttta atcatgtttt gatacaaaat
    23581 acctatgctt taaattttga ttttgtttta agtgatgatt tagtgagtat taataaaacc
    23641 ttaataaaac ctaatttaaa gccaaatgct tacgaaattc ctaatacaag cttgggaaat
    23701 gctttaagac aattgcgatc tagggcagac ttgagtcaga cttatcagga attttttgct
    23761 tctttagata atggaataga tgtaaagact aaattaaata gaatagaagg ttcagggtat
    23821 ttaagcactt ttagtaatca taatcaatct aatttaatgc aaaataatat gttatttacc
    23881 cttcatcctc ttaatattaa taattttgca caaaacaata atatcttact tgctagtact
    23941 tatttaccta gaatttttag caatgaagaa tatttttggc atcttactcc aagttataaa
    24001 tactataaag ataaagattt ttcaggtcaa aaaacaggtg ctaatatctc tttaggagaa
    24061 aatttctcat caggcttttt agcttatgct ttatctcttt ctagcgctaa atttaatttt
    24121 aataatggta gtgatttgaa gagttataac atggatttat tgcttaatta taaccatgat
    24181 ttagatttta taaaaatatt aagtggatta ggtataggtg taggatttaa tactcttaat
    24241 cgttttgtag tagagcagcc aattgaaggc aaatataaaa cattgcaaac ttcagcccag
    24301 cttggtgtaa ctaaagatat tattttaggt caagatttta tttttaatcc tttaatgtat
    24361 tttacacata gtttttttta tcaagaagat tttaaagaaa ataaaagtcc ttttgctaaa
    24421 aattatgaaa gtttaaaaca tcatagcata aatgcaaatt taggttttaa tcttgctaaa
    24481 aatatagagc aaga
//
LOCUS       DARGEX010000010        23339 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.010, whole genome shotgun sequence.
ACCESSION   DARGEX010000010 DARGEX010000000
VERSION     DARGEX010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.010"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..209)
                     /locus_tag="SF010_000348"
     CDS             complement(<1..209)
                     /locus_tag="SF010_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229313.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISS"
     gene            124..1125
                     /gene="mltG"
                     /locus_tag="SF010_000349"
     CDS             124..1125
                     /gene="mltG"
                     /locus_tag="SF010_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG8229314.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1206..1637
                     /gene="flgB"
                     /locus_tag="SF010_000350"
     CDS             1206..1637
                     /gene="flgB"
                     /locus_tag="SF010_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG8229315.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPGKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1647..2141
                     /gene="flgC"
                     /locus_tag="SF010_000351"
     CDS             1647..2141
                     /gene="flgC"
                     /locus_tag="SF010_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG8229316.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2148..2444
                     /gene="fliE"
                     /locus_tag="SF010_000352"
     CDS             2148..2444
                     /gene="fliE"
                     /locus_tag="SF010_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG8229317.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2451..4241
                     /locus_tag="SF010_000353"
     CDS             2451..4241
                     /locus_tag="SF010_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8229318.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(4256..5887)
                     /locus_tag="SF010_000354"
     CDS             complement(4256..5887)
                     /locus_tag="SF010_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HEG8229319.1"
                     /translation="MTNLGIGFKVFSGDLLEKILAKSTDTKIKSILFGTLSTLIMQSS
                     TLVSIITISFLSAGLISLGTGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIG
                     VLFFFQKDSVLKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     LGLGALLTGVIQSSTVIMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTN
                     IEGKKLAFASCIFNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLI
                     GVVLFSFFTPQIVLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEALRKESEHLYN
                     NTYAIVAHAIGFSRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFS
                     TKAQVYINDETKNHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKI
                     RSNLGELLRSIEELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKIT
                     TAEGISILNDTTFAAKIAEELIGAVEVIFSKDISN"
     gene            complement(6030..6464)
                     /locus_tag="SF010_000355"
     CDS             complement(6030..6464)
                     /locus_tag="SF010_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229320.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(6464..6781)
                     /locus_tag="SF010_000356"
     CDS             complement(6464..6781)
                     /locus_tag="SF010_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG8229321.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILSNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(6778..8604)
                     /gene="htpG"
                     /locus_tag="SF010_000357"
     CDS             complement(6778..8604)
                     /gene="htpG"
                     /locus_tag="SF010_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG8229322.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8677..9045)
                     /gene="crcB"
                     /locus_tag="SF010_000358"
     CDS             complement(8677..9045)
                     /gene="crcB"
                     /locus_tag="SF010_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG8229323.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYFNFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(9039..9731)
                     /locus_tag="SF010_000359"
     CDS             complement(9039..9731)
                     /locus_tag="SF010_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG8229324.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERVKLC"
     gene            complement(9712..10908)
                     /locus_tag="SF010_000360"
     CDS             complement(9712..10908)
                     /locus_tag="SF010_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8229325.1"
                     /translation="MKILLTLIFSIVVLFARGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKNSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10905..11552)
                     /gene="purQ"
                     /locus_tag="SF010_000361"
     CDS             complement(10905..11552)
                     /gene="purQ"
                     /locus_tag="SF010_000361"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG8229326.1"
                     /translation="MKVAIIRFPGTNCEIDTAYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIISLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            complement(11554..11799)
                     /gene="purS"
                     /locus_tag="SF010_000362"
     CDS             complement(11554..11799)
                     /gene="purS"
                     /locus_tag="SF010_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG8229327.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            complement(11808..12518)
                     /locus_tag="SF010_000363"
     CDS             complement(11808..12518)
                     /locus_tag="SF010_000363"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG8229328.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12520..13854)
                     /locus_tag="SF010_000364"
     CDS             complement(12520..13854)
                     /locus_tag="SF010_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG8229329.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13981..14271
                     /locus_tag="SF010_000365"
     CDS             13981..14271
                     /locus_tag="SF010_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG8229330.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKIVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            14383..16956
                     /locus_tag="SF010_000366"
     CDS             14383..16956
                     /locus_tag="SF010_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8229331.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16984..18915)
                     /locus_tag="SF010_000367"
     CDS             complement(16984..18915)
                     /locus_tag="SF010_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG8229332.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDIAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKVNMKFNESEIIF"
     gene            complement(18912..19463)
                     /gene="maf"
                     /locus_tag="SF010_000368"
     CDS             complement(18912..19463)
                     /gene="maf"
                     /locus_tag="SF010_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG8229333.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19463..21991)
                     /gene="alaS"
                     /locus_tag="SF010_000369"
     CDS             complement(19463..21991)
                     /gene="alaS"
                     /locus_tag="SF010_000369"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG8229334.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDVGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22106..23179
                     /locus_tag="SF010_000370"
     CDS             22106..23179
                     /locus_tag="SF010_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG8229335.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRTLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIVVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23184..>23339
                     /locus_tag="SF010_000371"
     CDS             23184..>23339
                     /locus_tag="SF010_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8229336.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDK"
BASE COUNT         8216 a         3848 c         3270 g         8005 t
ORIGIN      
        1 tgtgatgaaa tttcggaatt ttgagtctca tttatagtga tattttttgc tcgtacaatt
       61 aattttttat ctaatttaat atataattgt tccaatttta aaaaatcaaa ttggatacta
      121 gagatgacaa ttccattttt aagcactata aacaaagcta atataagcac aacaaaaaat
      181 acaacaatat ataaaatttt ctttttcata cgcaacttct ttttgatatt tattttgggg
      241 attttttatt atctaactca gcctttaaaa agcaattctg tggtatttat tccccaaggt
      301 tcaatttctc aaattataac atatttaaag caaaataaat atcagatgag taatattgat
      361 aaatatattt tatttttttt aggacaccct caatcaggct ggatcaacat aggtacaaaa
      421 gatttaaata gagctgaatt tctacataaa ctcactattg ctaaagcagc acttcaaacc
      481 attactctta ttccaggaga aacaagcgta atctttctag aacaagcagc caaacaactt
      541 ggacttgata aagatatact tttaaaagaa tttcaagctc aagctcctta tgatgaagga
      601 gtttttttac cagaaactta taaaatcccg aaaggcatta cagaaaatct actcattcaa
      661 atgcttttaa accatgctga aatttccaat aaaaaaactt ctgagaaaat ttttggtgat
      721 tataatccaa aaaaatggca ccaatatatc atcatcgctt ctgtaataca aaaagaagct
      781 gctaatgaca atgaaatgcc tatagttgca agcgtaattt acaatcgact taaaaaaggt
      841 atgaaacttc aaatggatgg aactttaaat tatggaattt attcccatgt aaaagttacc
      901 ccacaaagaa taagacaaga taatagctct tataatacct ataaatttac aggattgcct
      961 aaagaagcgg tttgtaatgt ttctttagct gctattcgtg cagctatttt tcctttaaag
     1021 acagattatt tatattttgt gcgtgataaa aatactggag ttcatatttt tagcacaaat
     1081 atagatgatc acaataaagc cataaattta caaaaaggaa aataattttt gatattttta
     1141 tacaaaatag ttaaattgga acagtatttg cttgttaata ttaaaaatta taaaaaggat
     1201 aaaaaatgat taacccattt aaatcaaaag aactagtcac tggtgcttta gcgggtagaa
     1261 atctaagaaa tcaactcatc aatgccaatc ttgcaaatgt tgatactcct ttttataaag
     1321 caagagatat tgaatttgaa acagctttgg taaatcgtgc aaatgaaatt ttcaaaaaaa
     1381 atgacaaaaa agaattagaa ttggcagtaa ccgaagaagg gcatcaaaaa ccttggaaat
     1441 ttcctgatcc tggtaaatct actatttact taagagatgg tcatttggca agaaatgatg
     1501 caaatactgt tgatctagat gtagaaacta cagaaatgag taaaaataca gttatgataa
     1561 cagctcttga tggagtttta agaagacaga gcaatatctt tagttctata cttgatgcaa
     1621 gctctaaatt aagttaaagg taaattatgg catacttaag tgattttgat attagtggtt
     1681 atggtttaag tgctcaacgt tttagaatga atgttattag ctctaatata gctaatgcaa
     1741 acactacaag aacagctgaa ggtgggcctt atagaagacg cgaagtgatc tttaaagcaa
     1801 cagattttga taagctttta aatgagcaaa ttaacaaaga taataatttt ttaaaatatg
     1861 aaaatccttt aaatgatcca agttcgccag aagaagctaa acctgctatt caaagtgttg
     1921 tagtggataa agtggtcaga gatgacaaag attttcgtat gaagtatgat ccaagccatc
     1981 ctgatgcaaa tgctgaaggt tatgtagcgt atccaaatgt aaaccctgtt attgaaatgg
     2041 cagatttgat tgaagctaca agagcttatc aagccaatgt aagtgctttt acaagtgcaa
     2101 aaactatagc tcaaagtgcg attgatttat taagaggata ataaaaaatg aacaatatta
     2161 atgatttaag attaaataat aatatttcaa ataccaacaa aagtcaaaat tccacaggaa
     2221 ttggtgatga atttgccaag atgcttaaaa atgaaatcga tgatttaaat aaagcacaag
     2281 aaagtggaga agctgcaatg acagacattg ccacaggaca agtaaaagat ttacatcaag
     2341 cagctatagc tatcactaaa gctgaaagca gcatgaaatt tatgctagaa gtaagaaata
     2401 aagcgatcag tgcttataaa gaaatcacaa gaactcaaat ttaaacccta atgcaagaat
     2461 ataaaaaaaa tagggtttca aaagttgcct ttgcctactg catggcactt ttgtttatga
     2521 ttatttttat cagctctact ttttttctta catcaaaacg tcatatacct aacactgaaa
     2581 aagatcaata cgctcttgct ctaagaggat cgattataac caaagataat tttactatca
     2641 caagttctaa acaaatttat cgtgctgaaa ttgatcttag aagcattaac aaagataaat
     2701 ttgatctatt tttaaagctt tttcaaattt atagtgggat aagtaacgat caagtagcag
     2761 atattaaaaa aagaatgcaa aatcaaaaaa aacgctctta taattttgtt cttttacaaa
     2821 acttagactc caagcaagca agctacctta aagatcttgc taaaaaactt tatatacaag
     2881 gttttttcaa agcttttaca aataactcag gaagagttga aacaagagga ttaaatatca
     2941 tcgaacatga agaagataga atttacatgt caaaagattc ttttactcct attatcggtt
     3001 atactaaaat gatattagat ccagaaagtg gaattttaaa aaatatagga gttaaaggtt
     3061 tagaaaaata ctacgatgca tgtctaagcc ctgttcaaaa tgaaaaaatt caaggactta
     3121 aagatatagg tggaaatatt attttaaatc taaattcact acaacaaaaa aagatcaatg
     3181 gttgtgattt atatttaaat ctttctttaa aactgcaaaa aagtatagag aaagctatag
     3241 atcaaagaaa tgaggattta aaagccaatg aaatcatcgt tggggtaatg gaaagtaaaa
     3301 caggaagaat tttagctcta gcaagctcaa ggcgttatga cccacaaaat cgcggaaagg
     3361 atctatcagt tcttaatgca agcgctatag aatacggcta tgaagcaggt tctgttatca
     3421 aaccttttat ctttacaaca gccttaagac ttggtaaaat aaaaatggat gaagtgatta
     3481 atacttatgg cggttcttac aagctaggac gtttcaccat caaagacgat cacaaaatgg
     3541 acaaaatgac tatggaggaa gttataagat attcttcaaa tataggcatg atacaaattg
     3601 ctaaaagact taacaatata gaaatcgtat cagggcttaa aatatttaaa tttggcgaaa
     3661 aaagtggtat tgatctaccc tatgaacaaa aaggagaaat tccaaatcct aagcgcttaa
     3721 gagatataga aaaatctgtt ttaagttatg gttatggact taaaacaacc tttatacaac
     3781 tccttgcagc ttataatgtt ttcaacaatg atgggtttta tatcacacca cgtttagctg
     3841 aaaaattcta tcaaaatgga cgctttacaa atcttgatga tgatgtaaaa aaagaaaaaa
     3901 ttctttctag cgaagccgct aaaacgatgc aaaatgttct tataaatgtt atagaaaaag
     3961 gaacaggaaa aaaggcaatt acacaaggta ttattgcagg aggtaaaaca ggaacggcaa
     4021 gaatagccga aagacaaggt tacacctcaa atcgctacaa tgcatccttt tttggttttg
     4081 caaatgattt aaatcacgcc tataccatag gagttctcgt aagacatcct actaaacctt
     4141 atagttatta tgctgcacaa agtgctttgc ctatgtttaa agatgttgtt gatattttaa
     4201 tcaatgaaga atttctaacg cctatacaag acaataacta aactagcaca aacaactagt
     4261 ttgatatatc tttagaaaat atcacctcaa cagcacctat aagttcttca gcaatcttag
     4321 cagcaaaagt tgtatcatta agtattgaaa ttccttcagc tgttgtgatt tttcttactg
     4381 aaataagatg ttcaacattg ctcaaggtta aagtatcgat ttcttttaaa atttcttttc
     4441 ctttttgaag atttttaata atcaaataaa gcttttcacg atcttcaaca actctaagct
     4501 cttcgatact tcttaaaagc tctcctaaat tcgatctaat tttattgtac tctaaagcca
     4561 aaaattcatt agaagaacta gaatatttct taatatttgc ttggataatt tttaaatttt
     4621 tagttgtttc ggctaaattt ttagctgcca tcttaaaggt aaaaatttta tgattctttg
     4681 tttcatcgtt aatataaact tgtgctttag ttgaaaaatc gataatagct tcaaaaagaa
     4741 cctttatcct agtttgatac aaatagtcca aatccacatt tttactaaac cactttttat
     4801 tttctaaaat ttctttaaaa cttttatcac tttgtatatc tttacgacta aaacctatag
     4861 catgagcaac aattgcatag gtattgttat aaagatgctc gctttctttc cttaaagctt
     4921 cgatggctgt gtcactaaac ttaaccaaac tactatcaag atataaaggc ttgtctttat
     4981 tcttatcttt aggagctttt actatcttat ttaaaaaaag aacaatttga ggagtaaaga
     5041 atgaaaaaag cacaacacca attaaattaa acaaagtgtg aaataatgct actttcaaag
     5101 ctatatcttc tatgtttaat acaatggata aaaaattaag aaaatgtata aaataaggaa
     5161 aaataagcac tattaaaaaa gctataccaa aattaaaaat acaacttgca aacgctaatt
     5221 tctttccttc aatattggta cttaaagaag ctaaaacagc cgttacaact cctccaacac
     5281 tagtacctaa agttgctgct aaggaatttt ccaaactgat ttgtcctgca agtaaagcag
     5341 cgacaataat agccattata actgtgcttg attgtataac tcctgtaagc aaagcaccta
     5401 atcctaaaaa aacaaaaact cctttaaaac cagcaaaatc aaaacgagaa agatcaatta
     5461 tatgtttaaa attttcaaaa ccacttttaa tataatccac acccaaaaag aaaaatccta
     5521 taccaataaa aatattaccc aaacctttta aaacactatc tttttgaaag aaaaataata
     5581 ctccaataat caaaagtggg atagctagca ttgaaatttt aatatttgtc aaaccaacaa
     5641 tcagccaaga gcttgccgta tttcctaaat ttgctccaaa aataatccct atgcccgtac
     5701 ccaaagaaat aagccctgca ctcaaaaaag aaatcgtaat aatagaaact aaagttgaag
     5761 attgcataat taaagtactt aaagtaccaa aaagtatact ttttatcttt gtatcggttg
     5821 acttcgctaa aattttttca agcaaatcac cactaaaaac tttaaaacct atacctaaat
     5881 tagtcattcc aataaagaaa tattgccact cctgctaaaa gattagcaag ctcgtcataa
     5941 cgaattaaaa taaaaatcag aactaaagta aaaatacttc atgaaataaa tttaaaatat
     6001 tttaaagaat ttccttcttc ttgcaatgcc taacctttta gtttttcaaa ttcatccatc
     6061 agaaattctc ttaaattttc agcttcttct tcgccttttt ctagatactc aagcaataaa
     6121 ttttctaatt cttttaaaaa agaaaaaagt tcattttgcc agatactatc gtttttattg
     6181 ctcaaattca tggtttgtat gaaagtcaac tctctgctta aatccccaag tttttctaaa
     6241 aattcatctt tttgattaga attttttaat gttaaattag cattttggat attttcttta
     6301 aattctctga ttttttcatc gattaaatca caaaattttg gataaatatc cattttaata
     6361 ggctctaaaa gagttcgctc atctatattt aaagtaagct ttttaacagc aaaataaaga
     6421 gctaaaaaag acaaagctgc tataagtaaa taaattccta gcattaataa cccttaaggg
     6481 ctagcattcc gccatctaaa ttgatgcttt caagtcccaa tttttcagct ataaattcag
     6541 ctgcaaccat gcttctatgg ccactacgac aaataaaagc aagtttttta ctttcatctc
     6601 ttttgctttg aaattcatct aaaaatttag catttaaaag cccttgatta tcatataaag
     6661 ccacacattg cgcattagat aaaatacctt cttcccattc taaaggagta cgcacatcaa
     6721 aaatttgata tgcgttcaaa tcttgctttg tccaaagact tgcagggata ttttctatca
     6781 tgaaaaagcc ttattgataa tttttgtaag gcttgcatta aattcagcag gattatccac
     6841 tcccatacct tcgcttagtt ttgccatatt taaaactagg gttgctatat ctgcactaaa
     6901 actttcgttg tttttaagac ctgtaaaaat agcgtgtttt ggattgattt ctaaaatagg
     6961 tttgaaattt tgttcttgac ccatttgttt taagagttgt tgcatagcaa aatcaggttt
     7021 atttttatca taaactatac aacttggact atcttttaaa cgactggtta gtcttacatc
     7081 ttcaacttga tcttttaaaa gttctttaaa tttagctaca agtggagcaa aagtattttt
     7141 ttcttcatcg cttagttcat ttttatcttc tacttgatta atggctacaa attttaaacc
     7201 ttcaaattct agcataggag ttaccaaaga atcaatctca tcatccatga gtaaaacttc
     7261 tatatttttt tgtttatact cttcaagcaa aggagaggtt cttaataaac tttcattatt
     7321 tcctgctata taaaaaattt ccttttgctc gccttgaagg tcatttttat actcttctaa
     7381 agagcgtaaa ttttcacctt tggtactttt ataaagcatg agttttaaaa gactgtcttt
     7441 ttctccgcca aaaccataaa gtccttcttt taatacctta ccaaaggttt taaagaaaga
     7501 taagtatttt tctttatcat tgtttttaag tttttcaagt tcacctaaaa tctttttaac
     7561 gctagcttct ttaacacctt ttaaaatttg attttcttgt aaaatttcac gacttacatt
     7621 aagtggtaaa tcttctacat cgataatccc ccgcacaaaa cgcaaataag ttggtaaaag
     7681 ttctttatcg tcatcgctga taaatacgcg ttttacataa agttttaagc cactttgata
     7741 atccacacgg aataaatcaa aaggtgcgtt ttgcggtatg aaaaataaag aattatattc
     7801 taattttcct tcacttttag tgtgaagata aagtaaaggt ttgtttgaat catgaaaatt
     7861 ttgctcataa aatctttcat aatcttctgc tttaaggctt gatttttgca ttctccataa
     7921 agcattggct ttattgattt gagaaatttt aagttcagtt tttccttctt cttctccttc
     7981 tttagcagga gtaaattctt ctttttccat gaaaattgga aattgaatat gattagaata
     8041 tttttctata atgctttcga ttttataagt attagcaaac tcatcatctt ttaagtataa
     8101 agtaatgctt gttccttgtt cttctttgtt tgcgtcatta atctcataac catttgcatc
     8161 agaactccaa agataagctt tatcatctaa agcttttttg cttaaaactt cgattttact
     8221 agccaccata aaagcagaat aaaaacctac tccaaattgt cctatgagtt gagaatcttt
     8281 tttagcatca ccacttaaat tttctaaaaa acttttagta ccgctttttg ctatggttcc
     8341 aaggttgtta ataagatcat ctttatccat acctatacca ttatcactaa tgcttaaagt
     8401 ttttttatct ttgtcaattt tgatttcaat tttaggttcg aattttaagc ttttatattt
     8461 atcatcactt acgcttaaaa aattaagttt gtctaaagca tcgcttgcat ttgaaataag
     8521 ctctcttaaa aaaatttctt tattagaata taaagaatgt atcataagct gtaaaagctg
     8581 attgacttcg gtttgaaatt gcattttaat ttcctttgta attttttaaa gtggtatttt
     8641 agcaaaaaat acaaattcta aagtaaattt aaagatttat ttgaaaatta aaaagccaag
     8701 ccatgcggca aataagcaaa gaaagacatt taagatgata tttaacgcaa aattaaaata
     8761 atttccactt tgcaaaagaa gtaaattttg ataagaaaaa gtagaaaaag ttgtaaaagc
     8821 tcctaaaaaa cctgtactta taaagctttt aagcaaagga gataaacctt tattttgtgc
     8881 ataagaaaac aaaagtccta tgataaaaga acccaaaaca tttacaaaaa gagttccaaa
     8941 actgatagaa taaggaaaaa atttattcac taaatttata gaaagcattc ttaagattgc
     9001 tcctataaat cccccaaaac caactactag aagagtattt agcaaagctt gactctttct
     9061 tgatcgagta attcttgcat tttttttctg gtgttttcaa gccatttttc atcatttgta
     9121 tcgactaaat ccatacaaat gattttaagt actccgctgc ttgcgctaaa actttttgtg
     9181 tctaaaattt ttgcagaatc cacaattaaa ataggttgaa ctttaagatt taatttttca
     9241 cttaaaattt ttgctccact ttgaaattta agcatttttt catttttaga tctagttcct
     9301 tctggaaaaa tagccaaaac cctatcttca ctaattcttt cttttgcttc ttttaaaact
     9361 cgtaccaaat cacgtggatt ttttctatct atacaaagaa gttttggttt tttcatagca
     9421 actttgaaaa taggaatttc tcctaattct tttttggcaa tccagcataa atttttagga
     9481 tataattctt ctaaagcgat gatatctaaa gcactttgat gattcattaa aatcatctga
     9541 gcttgcggat taaaagtacc aatgatttct tgtttataag agatagtata tctttgaaat
     9601 ttagcccaaa ttttgcggat tttccaaagt gtgttttgag attttgtaaa gcaaaaacaa
     9661 aaaatcacca aagcaacact taaaacaaaa aaaatccaaa aataaagagc tttaattttt
     9721 ttgtaaatca tctttattaa cccaacctat ttttccatca gaaaacagta ctttaatata
     9781 attttgtctt ttgcccaaaa cttctacttt ttcatctgca tttgccgtat aaaaataagt
     9841 tgaaggctct gtaggtaaaa ttttagccct agaaccagcc ttgataattg cattttgagt
     9901 attggtatct acaagaaaac taagcgcaaa acaaacaact gccaaagcca gaataatgta
     9961 attttttctc catacaaata aaactccaaa taaaaccgct aaaaaccaca aagcatattg
    10021 tttataaata tttaagtctt tatttacagg atttaaatca ctctgagtac taatctcatc
    10081 gtcactaatt tttaatttta aatttatatt ttcaagcttt ttactgttct tattgaaata
    10141 cgaaaattca aaatttgttt tacttaatgg caaaatagca taataaaaag cactagaagc
    10201 attaaagtct ccttttaaat tttcaatacc ttgcttttga attccttcta taaaaaagct
    10261 tttaagattt gtattggttg cgtttagttc taccatcata atgatattag catcatcaaa
    10321 ataactcgct ttaacttttt taatttccaa agaacttgcc acaaggtgtg aaaaatcctt
    10381 attggataaa gtattttcaa atttgatagg attaagattg atatcagcct cttgaaaagc
    10441 ttcattattt ctaagaagtt tgatagaaat tttactcaaa ctagcatttg aatttttggc
    10501 ttcaaaccat aaagttgttt tatattcatt gttgataaat tcccattttg catctggatt
    10561 taaaaaagat aaattagttt tttctacgct tatgttaaaa tcaaattttg tattttccgt
    10621 agtgcgagca tagatcgtaa taggaaaaac ttctccaaca tatactctac ttggatattc
    10681 atcatttgta agaaccaaac tccctttggc tacaaaagga tcatctacat tgctttcaaa
    10741 gtcattgttt tcatcacttg gcggaatatt ttgataaatt ttttgttctt cttggggtaa
    10801 tttttgtaat tctttttgca tattttcatc ttggccgcta aatacagaaa tttcacccct
    10861 ggcaaacaat acaacaatgc taaaaattaa agttaataaa attttcaaga taaaaagcct
    10921 ttaagcattt ttaaacctac atcattacct agaacttttt cacaagcacg ctcaggatgg
    10981 ggcataagtc caaagatttt tttgttttca tcacaaattc ctgcgatatc aaatacagaa
    11041 ccatttggat ttggctcgta ttttagaata ataagatctt tatcttgcaa ttcttttaaa
    11101 gtagtctcat cagcgtaata atttccctct ccatgggcaa ttggtaaact aataatttca
    11161 tcttttttga aatttttcaa aaaggcatta tcattagaaa ccactcttaa actttggttt
    11221 tttgagataa agctaagatt gttgttatgc ttcattgcac cttttaaaag accactttca
    11281 agtaaaattt gaaaaccatt acaaatacct aagatatatc ctcctttttt tgcatgatta
    11341 aaaacacctt gcatagcagg agcaagtttt gcaatagctg cgcatcttag ataatctcca
    11401 taagaaaatc ctcctggtaa aacaactaaa tctgcatcaa attctttttc ttcatgccaa
    11461 acaatctgcg tttttactcc aagtttttca aaggcataag ctgtatcaat ttcacaattt
    11521 gtccccggaa atctaataat agcaactttc attttactct ttctcaatta caagctcata
    11581 atcttcaatg acgctattta ccaacaactc ttcacacatt ttttttactt gttctttggc
    11641 taatttttca tctttctcat caagagaaat tttgatttgt tttgctattt ttacttcttt
    11701 aacactatta aaatttaaag aatgcaaagc tttttccacc gctttacctt gtggatctaa
    11761 aaccccattt tttaaagaaa tatttacaat aacttccata tttttcctta atttaatatt
    11821 ctttttaaaa cttcttcata agccattttt acattaccta gatcttgacg aaatctatct
    11881 ttatctaatt tttcattgct aaatttatcc caaaatctac aactatcagg gcttatttca
    11941 tcagctaaaa caagctcatt atctttagtt aaacccagtt cgattttaaa gtcaatcagc
    12001 cttaaatttt tattatcaaa aaatggagtt aaaatagagt taatctttct agccatattt
    12061 ttaatttcac taatttgagc ttcattttgc actaaattta aaatcaaaca atgctcatca
    12121 ttgataaaag gatcgcctaa ggcatcatct ttaagacaaa attccaccaa agcaaaaggt
    12181 agcacagtgc catctttaat gcccagtctt tttgtaagag aacctgttgc aacattgcgt
    12241 actataactt caataggaac aattttacat tttttaacca cttgttctgt atcgcttata
    12301 gtttctacca aatgggtttt aatcccattt ttttcgagca aatgaaaaat ttcagtactg
    12361 attttacagt ttaatgcacc ttttccactt tcattgcctc ttttttctgc attaaaagca
    12421 gttaaatcat ctttaaactc actaattagt aaattttcat catcagtttt gaaaagtttt
    12481 ttaccttttc cttcgtagag catttctttt tttgtcattt tattgtcctt gtttgatatt
    12541 taaaatttta atagtatcaa tagccgattt taactgtgcg tcatcattga tttgtttttg
    12601 actgattaga tttttattgt ctttattttc ttgtttatct tcttttttat ttttatctat
    12661 tttttcaagc tcactttcta aatgttgttt taagtcgctt tcttttatag aaaaaccatc
    12721 ttcttgagta tttactttac ctggaaaaac ttcaatatca ggttttacac ccactgcttg
    12781 aatagtacgt ccgcttggaa gataatatct tgcgatagta agccttaaag cttcagtttt
    12841 attaataggt atgatttgct gaacactacc ttttccaaaa gtattttcac ccacaataac
    12901 accgcgttta agatcttgta aagctccact tacgatttca cttgcactag cacttccacc
    12961 atttacaagc acaaccaaag aagcattaga aattttgttt ttaggatcgg ctttatattc
    13021 ttgattttca cttgcgatgc gtcctttttg agaaacaata acacctttat ctacaaataa
    13081 atttacaagt cctatggctt gatttaaaag tccaccagga ttatttctaa gatctaaaat
    13141 aactccttta acattaggat attttttaag ttctttactt gccacatcta caacattttt
    13201 atcaaaattt gtaaccctaa gataaagaat gttttcattt tctatcattt ttgcataaac
    13261 actttctatc ttaataattt ctcttgtaag tgtaacatca aaaggttttg ttgcaccttt
    13321 tctaaaaatg gttaaagtga tttgagtttt tggcttacca cgcattttat ctacagcatc
    13381 attgagatta attcctaaag tggcctcatc attaattttt aaaataatat ctcctgattt
    13441 tatccctgct ttatctgctg gtgttccttc tataggagaa acaactgtta aagcaccatc
    13501 tttcatacct acggttatac caaggccgcc aaattcacca ttagtttgaa ttttcatatc
    13561 attaaaatct ttttcattta aaaaagaaga atgcgcatca agattgctta aaagccctga
    13621 taaagattta tccaccaaat cgctgatatt ttgatcatcc acatagtatt gctctactat
    13681 agcaagagtt tttgtaagct tatctaaagc ttctaggcgt ttttgaacct gctcttcttt
    13741 ttgatcaact ttagcttgta aatgacttgt taaaaataga cataaaatga aagtagtagc
    13801 aaagcctgca agacccgcaa aaaatcgttt tgttttcaaa ataagctcca tcattgagtt
    13861 ttagtttaat tagtttaaag agtaaatttt aataaaaatt gcttaaaact tcgtaaataa
    13921 atttaaattc ttaaaaatat gttaaaatag actaaaaatt ccaaaaagaa agttaataca
    13981 atgtgccaag aaaaacatac tcatacacat tctcaaaaac atcttaaagc agtttgcaat
    14041 cgtctaagta gaaccatagg gcatttaagc gctattaaaa gaatggttga aaatgacaaa
    14101 gactgtagtg aaattttaat ccagcttgct gccgtaaaag ccgaagttaa caatactgca
    14161 aaaatagttt taaaagaaca tttagctcat tgtatggtac atgctataga agaaaatgat
    14221 attcaaagta tagaagaatt aaacaaggct atagatatgt ttatgaaata atctaaaatt
    14281 agtcatttgt cctattattt aaaaaatttt actcaattaa cttgacatta tatgactaaa
    14341 gttatataat agcaagtata taaactaaat aaaggataaa acatggcaaa tatacaagat
    14401 tttttaactg ataatatgct ttcaaatctt gaaagtgcag catctttagc tatacattct
    14461 aaaaataatg aagttgtacc tttacatctt ttatgggctt taagcgtaga taatgcaagt
    14521 attttaaatc aaattttaaa taaattaaat atttctaaag aagccttaga gcttgaaatt
    14581 aaaagcagaa tttcaaaact tgcaacgagt tcaaatgtaa accgtgaaaa tatacgcttt
    14641 tccaatgaac ttataaattc attagaaaat gctaaaggat taatgagtgc taatggagat
    14701 agttatttaa gtgtggatac ttggcttata agtgaaagtc aaaaaagtcc tattaaagaa
    14761 attttggcgc aatttttaga tttaagagaa tttcaaaaag agcttgaaag tctaagagcg
    14821 ggacgcaaaa tcgatagcaa aacaagcgat gaaaccttag acagcttaaa taaatttggt
    14881 atagatttaa ccttaaaagc aagcgagggt aaacttgatc ctgttatagg cagagaagaa
    14941 gaaatcgaac gtttgatgca aattttaata cgcaaaacca aaaataaccc tatactttta
    15001 ggtgaaccag gcgtaggaaa aacagctata gtagaagctt tagcacaaag aattatcaaa
    15061 aaagatgttc caaaatcttt gcaaaataaa aaagttatcg ctcttgatat gagtgcttta
    15121 attgcaggtg caaaatacag aggagaattc gaagatagat taaaagctgt ggttaatgaa
    15181 gtgataaaaa gtgaaaatat cattcttttt atcgatgaaa ttcacactat agtaggagct
    15241 ggagcgagtg aaggcagtat ggatgcggca aatattttaa aacccgctct tgcaagaggt
    15301 gaactccata ccataggcgc aactacttta aaagaatatc gtaaatattt tgaaaaagat
    15361 gcagccttgc aacgccgttt tcaacctgta aatgtaggtg agccaagtgt taatgaggct
    15421 ttggctatgt taaggggtat aaaagaaaag cttgaaattc atcataatgt aactataaat
    15481 gatagcgctt tagtagctgc agctaaactt tcaaagcgtt atatagcgga tcgtttttta
    15541 cctgataagg ccattgattt aatcgatgaa gctgcagctg aactgaaaat gcaaattgaa
    15601 agcgaaccaa gttctttaag aaaagtacgc aaagatatag aaactttaga agttgaaaat
    15661 gaagctttaa aaatggaaaa tgatgaaaaa aatcaaaaaa gactcgatga aatcgcaaaa
    15721 gaactagcta atttaaaaga aaaacaaaat gccctaaatt cacagtttga aaatgaaaaa
    15781 agtgtttttg atggcataag tgctaagaaa aaagaaattg atctgcttaa aaatgaagct
    15841 tctttggcta aagctagagg tgaatttcaa aaagcagccg agctagagta tggaaaaatt
    15901 ccaagtcttg aaaaagaagt agaaatttta gaagataaat ggaaaaaaat gagtgaaaat
    15961 ggagttttac ttaaaaatca agtggatgag gatttggttg ctggaatttt aagcaaatgg
    16021 acgggtatta gcgtgcaaaa aatgttaact tctgaaaaac aaaaattctt agaagtggaa
    16081 aaacatttaa aagaaagtgt cataggacaa gataaggcct taagtgcttt agctagagcc
    16141 attaaacgta acaaagcagg gcttaatgcg gacaataaac ctataggaag ctttttattt
    16201 ttagggccaa caggggtagg aaaaacacaa tcggctaaag ctttggcaaa atttttattt
    16261 gatgatgaaa aagcaatgat tcgctttgat atgagtgaat ttatggaaaa acatagtgtt
    16321 tcaagactct taggtgcgcc tccaggatat ataggacatg aagaaggtgg agagcttact
    16381 gaagccgtac gaagaaaacc ttatagcgtg cttttgtttg atgaagttga aaaagcacat
    16441 aaagatgtat ttaatgtgct tttagggatt ttagatgatg gtagagcaac cgatagcaaa
    16501 ggtgtaacag tggattttaa aaataccatt atcattctaa cttctaatat cgcctcaagt
    16561 gccattatga atttaagtgg aaaagaacaa gaagatgcgg taaaaaatga gttaaaaaat
    16621 ttctttaaac ctgagttttt aaaccgttta gatgatatta tcacctttaa tccacttgga
    16681 aaagatgaag cttatgaaat agtcaagctt ttatttaaag atttacaaat gagcttagaa
    16741 aacaagggaa taaaagcaag tttaagcgaa aatgcagccc ttttaatcgc taaagatggt
    16801 tttgaccctg attttggtgc tagaccttta agaagagcta tttatgatct tatagaagat
    16861 aaattaagcg atatgatact tgctgatgaa cttcatgaaa atgatagcat tatcattgat
    16921 gcaaaagatg atgaaataat catcaaaaaa gcttaatcat tttgaaagta gatctttcta
    16981 ctttcaaaat ataatctcgc tttcattaaa tttcatattt acttttggta atggtgattt
    17041 ggtggtataa taagcacttt ctcctttata atttccacga taaactccat taggaatgct
    17101 aaattttcta gttgtatcag ggaatttttc tatatattga gttaaaaatt ctctaaacac
    17161 aggagcagct gttctagccc caccttctgt ataacgcata ggtttgttgt tatcatttcc
    17221 ataccaaatg attgcttcta tttcaggcgt aagtccacaa aaccaagcat caacactttt
    17281 attcgttgtt cctgtttttc ctgctatttc tatatctttt actcttgcat tacgccctgt
    17341 gcctttttca acaacatttc tcatcatatc taaaaccaga aaactttgcg cttcatcgct
    17401 gactttacgc tcatttgagt taaattccat gatggtttta ccggttttat cctgaacttg
    17461 tctgataatt tgaggatctt taatcgtacc atagttccca aacatggtat aaaatttcga
    17521 atactccaaa ggagaaatac caaaacttcc caatacgatt gataaattag gcggtatatc
    17581 tttaaatcca aattccatta gtttagagta aagaacatca agccccatat caagtgcgag
    17641 attaatggta gctaaatttc ttgatcttgt taaagcttct tttaaggtaa ttaaacctaa
    17701 aaatttaccc ccttcatttt taggtttcca atcctcatta ttacccgctc caccttcaaa
    17761 aattctagaa atatcagcaa tttcactcat aggcgaatat cctaaattaa tcgccacttg
    17821 atacacaaaa ggtttaaaag agcttccagg ttgacgcata ctttgagtag cgcggttata
    17881 attacttttt tcataatcaa ctccacctac caaagctaaa acatcaccac tttgatgatt
    17941 taccacgacc atagctccgt tcaaagtgct taaatttgca tctttatcgc gttttactat
    18001 ctcatcataa ccaaatttta aagcattctg tgccatattt tgaacatcta agtctatatt
    18061 taaaatgatt ttatatccac ctgtttttaa gtctttgata ttagggctta attgtttaat
    18121 cacttcatct acgacataag gagcagcatt ttgagtaagc gtatcatcat aaacttgcgg
    18181 aatttcttta atggctatat cataatctgc ttttgaaatc caacctagat tatacattct
    18241 tgaaataaca ttatttgctc ttgaaatgga aagatctaaa tgctttgtag gatcataact
    18301 gctaggtgct tttggcatac ctactaacat agcaatctct ttaaggctta attcatttaa
    18361 atttttatga aaatacccca aagctgcggt ttttactcca taatacccat gtccaaaaaa
    18421 aataaaattt aaataccttt ctaaaatttg ctctttagtt aaaatggttt ccattttata
    18481 agcaagcaaa gcttcgcgaa ttttacgcgt aatagttctt tcaggggtta attccgtgtt
    18541 tttaataaat tgctgggtaa gagtggaagc tccttccatg gtttttccac cgctttttat
    18601 gatttttaca gcagctctaa aaatggcatc gatattaact ccattatgtt caaaaaagct
    18661 tgtatcttct atagcaacca aagcttctat aaggcgtgga ggaagctctt cataaggagc
    18721 gtaaaaacga tgttgttcaa aaatattagc cacaagcttg ccatttctat cgtaaatttg
    18781 tgttgtaaga ggaggtttgt attctttaaa agtataaccc tcagtatcag cacttgtgaa
    18841 aagataagcc acataaataa atccagctat aaacaaaaga gtaaaaaatg aaaaaatata
    18901 ttttaatatt ttcataaata agcctttaaa gtttggatat caagccctaa agcagtgctt
    18961 agatttccta cttgttgggt gatgaaattt tgatgaaaac cctcacacat aatacaaccc
    19021 gccttgcctt tataaagatc attttctaca taatctctta aagcattttc atcaaaattt
    19081 ttaaaataaa gtgtagtttt tgaaagagaa aaaactcttt tttcaggttt tacaagcaaa
    19141 aaagccgata aaatacttgc atactttcca ttttgcaagg caagcatttc ataagcttct
    19201 tttttatcct ttgctttggt aagaattttt tcatctatac aaactatact atctgcaaaa
    19261 agcaaatttt ggttttgaaa atctttgcct aaagtactta aaaattgtct ttctttttca
    19321 agaactattt tttgaacata taaaaaaggt gaaatatttt tatttaaatt ttcatcataa
    19381 tcaaaactaa cttgcctaaa atcaatcttt gcggttttaa gcaagttagc tcttgaaatg
    19441 gaacttgaag caagaattaa cattaaagtg ctttttctat cgtttctaag ctttgtttta
    19501 aagcttcatt gattttgctt aaatcttttc cacctgcagt agcaaaatca tctcttccgc
    19561 caccatttcc acctaaaatt tgcgccgctt ctttaaccaa agctcctgct tttaaaggca
    19621 catctttaac gccagctgct aaagtgattt tttcatcttt tacttggata agtaaaatca
    19681 ccgctttagc aaatttgttt ttaaaatcat caatcatagc tttaatatcg ccattatcta
    19741 tacgttttac gcaaatttca acaccttgga tatttttaga atcaagctcg gttttacttg
    19801 aatttttaag ctcatttttt aaacttaaaa tttcattttt aagcttttta atcccgctta
    19861 aaatatcatt atttttaagt tcatctttta ctttagaaag ttcttcgagt tgatttttta
    19921 caaattctaa agccgcttta gaaaccacag cttcaatacg tctaactcca gcactcacac
    19981 cactttcttt aactatgtaa aaacttccta tttgagcagt atttttaaca tgagttcccc
    20041 cgcaaagttc tttgctttca cctagagtta aaacacgcac attgccttgg tatttttcat
    20101 taaacaatgc tatagcaccg ctttttttag cttcttctaa aggcatattt tctaagatag
    20161 cttcgcttga gtttataatc attttattga ctcttttttc aatgctttct agctcttctt
    20221 tgtttaaagc tttatgatga gtaaaatcaa atcttagttt attgctttca accaaagatc
    20281 ctgcttggct tacatgagaa cctaaaattt ctcttaaagc atgatgtaaa agatgagtgg
    20341 ctgagtggtg gcgtgcgatt tgctctcttt tttctgtatc gattcttgca tgaactatat
    20401 cgttaacttt tagttcttcg cctgctttta taaagctaag attgagatta aaaaactttt
    20461 gcgtatctaa aacttcacgc ttagctataa atccactatc agcactttgc cccccacttg
    20521 ttgcataaaa aggtgtgttt tcaagcatca cccaacccac atctttaagg gtggaaactt
    20581 ctttaaaatc ttcatctaaa agggctaaaa ttttactttc gcattctgct ttttcataac
    20641 ctacgaaatg attttctcca aatttttcaa gtaagttttt aaaatctccg cttgcagttt
    20701 tatctccact tcctttccaa gaagccttag cgcgtgcttt ttgctcattc atgaaaagtt
    20761 caaatttttc ttcatcaact ttaagatttt tttctcttag catatcagcc gttaaatcaa
    20821 gcggaaaacc ataagtatca taaagcttaa aggctacttc tccgctaaaa atttctttag
    20881 tgtttttaag ctcttcatta aaaatttcaa tcccattttc tatagtgctt aaaaatcttt
    20941 cttcttcaag gcgaatttgt tcttttataa agtctttttt ctcattaaga taggtataat
    21001 gtccgcccat taaatcgcac acaatatcaa ctagtttata cataaaagct tgtttaaaac
    21061 ctagcaaata tccatgtctt aaagcacgac gcaaaatacg acgcaaaaca taacctctac
    21121 cttctttatc aaaacttacc ccttgtgcaa gcaaaaatac acttgatctt atatgatcag
    21181 ctatgactct aaaacttgct ccgctttcat aaacataagt tttattacaa agttttgaaa
    21241 tttcattgat gattggcata aaaagcgagc tatcaaaatt gctaaattta ccttctttaa
    21301 tcgctgttac cctttcaagc cccattcctg tatcaatgct tggctttggc agtgggctaa
    21361 gcactccatc agcacttctt tcgtattgca tgaaaacaag attccagatt tctaaaaatc
    21421 tatctccatc tccgcccata taatcttcgc ttgagttaaa atgctcttgt ccttggtcat
    21481 aaaaaatctc actacaagga ccacaaggac cagtatcgcc catttgccag aagttatctt
    21541 tatcgccaaa tttgtaaatt ctttcttttt gaatgtgttt ttgccataga ttaaaagctt
    21601 catcatcgtt ttcatgcacg gttacataaa gtctatcttt aggtagtttt aaaacttcag
    21661 ttacaaattc ccaagcataa gctatggctt gttctttaaa ataatcccca aaactaaaat
    21721 tcccaagcat ttcaaaaaaa gtatgatggc gtgcggtata tcctacatta tctaagtcat
    21781 tgtgctttcc acccgctctt atacaagttt gacagcttgt tttgcgtgga gggtttgggc
    21841 gtggaatttc tcctgtaaat atacttttaa aaggcaccat acccgcatta gtaaaaagta
    21901 aagttgcatc atcaggaact aaaggacttg acggggttat ctcatgtcct tttgatgcaa
    21961 aaaaatccaa ataagctttt ctaatatcca tgaattttcc taaagaaatt tttataaaaa
    22021 catatcatac caaaattact ttaaattaag taaaactaaa atacaataaa catttttatt
    22081 taattttatt tctctaaggt tttttatgaa ttttatcaat cttcaagccc aatatctcgc
    22141 atacaaagat gaaatcaatg ctgaaattga aagcgtttta tcaagctctt cttttatagg
    22201 cggtacaaag cttaacgaat ttgagcaaaa tttagctcat tttttaggtg ttaaacacgc
    22261 tataggttgt tcaagtggaa ccagtgcttt atatcttgcc ttaagaacct tagatattgg
    22321 caaagatgat gaagttatag tgcctagttt tactttcata gcaacagctg aagttgtggc
    22381 cttggtaggt gcaaaacctg tttttgtaga tataaattta tcaaattaca atcttgattt
    22441 tgaagcagtg caaaaagcaa taactccaaa aactaaagct gttatagtag tgagtatgtt
    22501 tggacaaatg agtgatttaa gggctttaga agaaatttta aaagataaaa atatcacttt
    22561 gatcgaagat ggtgcacaaa gttttggcgc aagtttcaaa ggagaaaaat cctgctctat
    22621 agctaaaatt tcatgcacaa gcttttttcc ttcgaagcct ttgggagctt atggcgatgg
    22681 cggggctatt ttttgccatg atgatgaaat tgctaaaaaa ataagaattt tactcaatca
    22741 cggacaaact cagcgttata aacatgaatt tataggtata aatggacgcc ttgacacctt
    22801 acaagcagcg attttaaatg ttaagttaaa atacctagaa aaagaattag acaaaagaca
    22861 aaaattagca caaatttata atgcaaattt aaaaaactgt caaattccac aaattaatcc
    22921 aaatgctttt agcgcttatg cacaatacag tgttttagtt gaagatagag ctagtgtatt
    22981 gcaaaaattt gaaaaagcta atatacctta tgctatacac tatccaaccc ctttgcataa
    23041 acaaccttgc tttagtgagt tttcaaattt agaacttaaa aattcagaat acgcaagcga
    23101 acacatctta tctttgcctt tttcaccttt tttaagtgaa gaagagcaag agcaagttat
    23161 ttgtattttt aaagattgat tccatgaaaa taggtatcat aggccttgga aaaatggggc
    23221 aaaaccactt aaatgaactt agtaaaaatt ctcattttaa acttaatgca ctttttgatc
    23281 tttgcaaaaa tccaaaccta aatatttttg atgatatttt ttatgatgat ctggataaa
//
LOCUS       DARGEX010000011        22817 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.011, whole genome shotgun sequence.
ACCESSION   DARGEX010000011 DARGEX010000000
VERSION     DARGEX010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22817
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.011"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..127
                     /gene="rpmH"
                     /locus_tag="SF010_000372"
     CDS             <1..127
                     /gene="rpmH"
                     /locus_tag="SF010_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG8229337.1"
                     /translation="TYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV"
     gene            124..450
                     /gene="rnpA"
                     /locus_tag="SF010_000373"
     CDS             124..450
                     /gene="rnpA"
                     /locus_tag="SF010_000373"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG8229338.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            447..788
                     /gene="yidD"
                     /locus_tag="SF010_000374"
     CDS             447..788
                     /gene="yidD"
                     /locus_tag="SF010_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG8229339.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            785..2371
                     /gene="yidC"
                     /locus_tag="SF010_000375"
     CDS             785..2371
                     /gene="yidC"
                     /locus_tag="SF010_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG8229340.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLISKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDVNQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            2375..3193
                     /locus_tag="SF010_000376"
     CDS             2375..3193
                     /locus_tag="SF010_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG8229341.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            3186..4514
                     /gene="mnmE"
                     /locus_tag="SF010_000377"
     CDS             3186..4514
                     /gene="mnmE"
                     /locus_tag="SF010_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG8229342.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGKLLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            4525..6711
                     /gene="purL"
                     /locus_tag="SF010_000378"
     CDS             4525..6711
                     /gene="purL"
                     /locus_tag="SF010_000378"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG8229343.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            6708..7478
                     /locus_tag="SF010_000379"
     CDS             6708..7478
                     /locus_tag="SF010_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG8229344.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSSKKELSLDEAFTILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEKLKIGVEKFQKINEAYEKVKKHLER"
     gene            7481..9013
                     /gene="purH"
                     /locus_tag="SF010_000380"
     CDS             7481..9013
                     /gene="purH"
                     /locus_tag="SF010_000380"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG8229345.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRGFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            9112..9573
                     /locus_tag="SF010_000381"
     CDS             9112..9573
                     /locus_tag="SF010_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229346.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            10030..10563
                     /locus_tag="SF010_000382"
     CDS             10030..10563
                     /locus_tag="SF010_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8229347.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGSIQKATRMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            10579..10698
                     /locus_tag="SF010_000383"
     CDS             10579..10698
                     /locus_tag="SF010_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG8229348.1"
                     /translation="MQENVEVSEKNEEISKILLQVADELKIVCHNLESELNQF"
     gene            10714..11148
                     /locus_tag="SF010_000384"
     CDS             10714..11148
                     /locus_tag="SF010_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG8229349.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQDQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            11247..12224
                     /locus_tag="SF010_000385"
     CDS             11247..12224
                     /locus_tag="SF010_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG8229350.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            12221..13108
                     /locus_tag="SF010_000386"
     CDS             12221..13108
                     /locus_tag="SF010_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG8229351.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            13105..13977
                     /locus_tag="SF010_000387"
     CDS             13105..13977
                     /locus_tag="SF010_000387"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG8229352.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFNKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(13989..15335)
                     /locus_tag="SF010_000388"
     CDS             complement(13989..15335)
                     /locus_tag="SF010_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8229353.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            15384..16727
                     /gene="pif1"
                     /locus_tag="SF010_000389"
     CDS             15384..16727
                     /gene="pif1"
                     /locus_tag="SF010_000389"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8229354.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            16737..17471
                     /locus_tag="SF010_000390"
     CDS             16737..17471
                     /locus_tag="SF010_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229355.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGTNVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIELDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(17468..17977)
                     /gene="lolA"
                     /locus_tag="SF010_000391"
     CDS             complement(17468..17977)
                     /gene="lolA"
                     /locus_tag="SF010_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG8229356.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            18077..20665
                     /gene="secA"
                     /locus_tag="SF010_000392"
     CDS             18077..20665
                     /gene="secA"
                     /locus_tag="SF010_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG8229357.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            20662..21867
                     /locus_tag="SF010_000393"
     CDS             20662..21867
                     /locus_tag="SF010_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229358.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            21890..22675
                     /locus_tag="SF010_000394"
     CDS             21890..22675
                     /locus_tag="SF010_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8229359.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            22737..22812
                     /locus_tag="SF010_000395"
     tRNA            22737..22812
                     /locus_tag="SF010_000395"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22770..22772,aa:Lys,seq:ttt)
BASE COUNT         8162 a         2761 c         4233 g         7661 t
ORIGIN      
        1 aacttatcag ccacatggca ctccaagaaa acgtactcat ggttttcgtg ttcgtatgaa
       61 aactaaaaat ggtcgcaagg tgatcaatgc aagacgtgct aaaggtagaa aaagacttgc
      121 tgtgtgaaaa attttgataa atttagcaca aacgaggaat tttcatctgt atataaagta
      181 ggtaaaaaat ggcattgcga aggtgtgatt attttttatc tgaatagtta tgaaaaaaaa
      241 atagcagttg ttgctagtaa aaaagttgga aaagcagtgg ttagaaatcg ttcaaaacga
      301 attttaaggg ctttgtttgc taagtttgaa agatatcttc aagatggcaa atatattttt
      361 gtagctaaaa atgaaatcac tgaactttct ttttctaggt tagaaaaaaa tctaaaatgg
      421 ggattgaaaa aactagaatg tttcaaatga tatgcctaaa aatactccgt ttttatcaga
      481 aattcttaag ccctttaaaa cccgctgctt gtaggtatta tcctagttgt tctgagtatg
      541 cgctttggca gtttcaaaaa aagaattttt ttctagcttt tttttctact ttttttagaa
      601 ttttaagatg caaccctttt tttaaagggg gttttgatta tcctagagtt tctaaaaatt
      661 tttatcctat aaatttatgt tttaagccta tatttttagc agaaaaacaa ctttgttttt
      721 tatatatacc ttataaaaat aaaagttttt atcttataaa aatcatcttt aaaaggacaa
      781 atcagtgaat aattcaaata atatttttca gcaaaagcgt atacttttag ctgttgtgat
      841 ttctttttta ttttttgtta tttatgatta ttttttcatt ccaaagcaac ctttaaaaat
      901 agaacaaaac attacacaaa aaaatcaaca aaacacaagc ataaataaca ctcctaatat
      961 acaaaatacc accacaaata ctccaagtgc ggctttagtt tcgcaagata gtgtgatatc
     1021 taaggttcaa agcaagcatt ttgaagcaca aattgactct tttggtagaa tttctgcttt
     1081 ttatttaaaa gatagaaaat accaaaatga gaaaggggaa tttataaatc ttattagcaa
     1141 ggaaaatagt ccttatcctt tagaaatgcg ttttagtgat ccaagtatta actcagaggc
     1201 ttttaaaatt ccttatgtcg ctaacgctag caatcttttt gttgatgaaa atggaagtca
     1261 agttttaaaa ctcactcaaa atctttccgg attgaaaatc gaaaaagata ttacttttta
     1321 tccaaaaggg aattatgaga tagaagttaa actcagcaag aatgcaaatt attttataag
     1381 tccaggatat cgtccaaata ttgccgtaga tagttatacg gttcatggtg ctttagtaat
     1441 ggataataaa gaaaccatcg aaacttataa agatggagat gtagaaaagg atgaaagtgc
     1501 taataatgtc gtaatgactt cggcttttga tagatactat gcaactttct tttataattt
     1561 tgataaacct ttaaatgtgg caatcagcaa ggatgttaat caaaacccta tagtttttgc
     1621 ttatagtgat aatgaattta aagcaggggg ctatataggc tctaaagaac atgtgatttt
     1681 aagaagtata gatccacgcc ttgaagcagt tgttgaatat ggttggttta cttttattgc
     1741 taagcctatg tttgagtttt tgaatttctt gcatcagtat ataggaaatt ggggttgggc
     1801 tatcgttgtg atgactttaa ttgtgcgtat tattttattc ccgctaactt ataagtctat
     1861 gatttctatg aataaactta aagatcttgc tcctaaaatg aaagatatta gagagcgtta
     1921 taaaggcgat ccacaaaaaa tgaatatgca catgatggag ctttataaaa aacatggtgc
     1981 aaatcctatg agtggttgtt tgcctatact tttacaaatt cctattttct ttgctattta
     2041 tcgcgttttg cttaatgcta ttgagctaaa agcagctcct tgggcgtttt ggatacatga
     2101 tttatcggta atggatcctt atttcatttt gcctatttta atgggtgcaa cgatgttttt
     2161 acaacaactt attacaccta tgactataca agatcctatg caagctaaga ttatgaaatt
     2221 tttaccagtg atttttactt ttttctttat cactttccca gcaggactta cgctttattg
     2281 gtttgtaaat aacctttgtt ctttggttca acaatgggtt atcaataaaa tatttgctaa
     2341 agaacatcac aaaaaaacaa gcggagcatg aaaaatgaaa atcgaagcca ttgatcttca
     2401 aagtgcctta acagaagctt caagaagttt agaatgttct gtgatggact tagaatatga
     2461 gattattcag catccaagaa aaggtttttt tggatttgga agaaaaaagg caattataga
     2521 ggctaaagca aaaaaaagga ttttgaaaaa aaatcctaaa aaagaattta caagttcaaa
     2581 aaatcacaaa ccagaaacac atgagccaaa acaagaaaac aagattgaaa caaaaaatga
     2641 aaaaaataaa agccaaaaag aaaaatatac agtaaaaagt gatgaaattt ttgatagttt
     2701 tcatcgagaa agcaaaggag tgcgtaatac tcaggatatt ttagatgaga ttcgcattca
     2761 gcttgtaaaa cttttagaaa gctcccagtt taaaatagag cttagtgaac ttagaatgta
     2821 tgatgaagat tgcgttttga ttcgattgga tggggaagat gctgctttga tgataggtaa
     2881 agaagcacat cgttacaagg ctatttctta tcttttacat aattggatca atttaaaata
     2941 taatctttta gtgcgccttg agatcgctca atttttagaa aatcaaattc aaggtatgca
     3001 gctttattta caaaacgtga ttgaaaaaat taaaattcat ggacgcggac aaaccaaacc
     3061 tttagatggg gttttgataa aaatcgcttt agagcagtta agagctgaat ttccagataa
     3121 gtatgtagga attaagcaaa ataatgatca aagatttgtt gtaataaacg actttttcaa
     3181 aaaagatgag tgatactata gcggctattg ccacagctca tggtgtgggt tcgatttcta
     3241 ttgtaagatt aagcggtgaa agggctttag aatttgcctt aaagcttagc cacaaaacca
     3301 aacttacccc acgccatgct acttttacaa aactttttaa tcaaaataat gaaattatcg
     3361 atgaagctat aatgatatat tttaaagccc cttatagttt tacaggggaa gatatagtag
     3421 agtttcaaac tcatggagga tttagtgtga gtgaagtttt actcgaagaa cttgtgagtt
     3481 taggagcaag acttgcttta gcaggggaat ttagcaaaag agcgtgttta aatggcaaaa
     3541 tgactccttt aaaagcttta aatatacaag atctcatact ttcaaaatct gcacttgcag
     3601 ctaaaattat agcacgcaac atgcaaggaa acttaggaaa acttttagaa aaaattcgca
     3661 cagatttggt taaaaccttg gcttttgtag aaactagcat tgattatgct gatgatgatt
     3721 taccttctga tttattagaa caaatttcta ctatgtgtga agaaaattct aaaattttaa
     3781 aagaaattta tacactttct caaagcaaaa aaggacttat agaaggtttt aaaatcgcta
     3841 ttgtaggtaa gccaaatgta ggcaaatctt cgcttttaaa tgccttgctt tcttatgaaa
     3901 gagctattgt ttcagatata gcaggcacca ctcgtgatac tatagaagag agctttaaat
     3961 taggaacgca tttattacgc attatagata cagcaggtat tagggaaagt aaagatgcta
     4021 tagaacaaat cggcgtagct ttaagtaaaa aaagtttaga agatgcagat attattttgg
     4081 cagtctttga tgcttcaaga gtgcaagata aagaagatga gaaaattttt gacttattag
     4141 caaatactga taaaaaaatc ttttggattt taaataaaag tgatttagaa aatgttttca
     4201 aaaatactca aaataaaaat tttatcaagc ttagtgctca aaaagacatc actttattaa
     4261 aagaagaatt gcaaaattat tttaattctt ttgatagcga aggtattatg gtaagttctt
     4321 tagatcttat taatgcttgt aaaatttcaa gtgaagcgat ttttagagct aaagggcttt
     4381 tagaggaaag ttctttagaa ctttttgctt ttgagcttaa tttagcgatt aatgaacttg
     4441 caagatttac caaagatttt caaagagatg aaattttaga cgaaatgttt ggtaattttt
     4501 gtttaggaaa atgaaaggat aaaaatggac aaagaaacca taaaagcaca taaaatcagt
     4561 gatgaagaat atgcacaaat tttagaaatt ttaggacgcg agccaaattt attagaactt
     4621 ggggttattt ctgcgatgtg gagcgagcat tgctcttata aatccagtaa aaaatatctt
     4681 aatggttttc caactaaagc accttgggtg attcaaggcc caggagaaaa cgcaggggtt
     4741 attgatattg ggcaaggtat ggcagcagtt tttaaggtag aaagtcacaa tcatcctagc
     4801 tttatcgagc cttttgcagg tgcggctacg ggagtagggg gaattttgcg tgatgttttt
     4861 actatgggtg caagagtggt tgcagggcta aattctttaa aatttggcaa tattcatgat
     4921 gaaaaatgcg gcaaacatca aaaatacctt gttaaaggtg tggtaaatgg aatttctcat
     4981 tatggaaatt gtatgggtgt gccaactata ggtggagaat gtgcttttga tgagtgtttt
     5041 aatggaaata tcttagttaa tgcctttgct ttaggggttt gtaaaagtga agatatcttt
     5101 tatgctaagg ctgaaggtgt aggaaatcct gtgatttatg tgggttcaaa aacagggcgt
     5161 gatggacttg gtggagcggt tatggcaagt gatagcttca atgaagaaag caaatctttg
     5221 cgtcctacag tgcaaattgg cgatcctttc agtgaaaaac ttcttatgga agcttgttta
     5281 gagcttttta aaactgatta tattgtgggt attcaagata tgggtgctgc agggcttact
     5341 tcaagttctt ttgaaatggc aggaagaagt ggcagtggca tgaaacttta cttagataaa
     5401 actcctatac gtgaaagcgg tatgactcct tatgagttaa tgcttagcga gtctcaagaa
     5461 agaatgctta tttgtgcgaa aaaaggctat gaagataagg ttatagaaat tttcaaaaaa
     5521 tgggatttag atgctgtggt tataggtgaa gttaccaata caggaaaaat ggagcttttt
     5581 tggcatgatg agcttgtagg gcttattcct atcgagcctc taagtgaaaa agcgccgatt
     5641 ttaagtcgtc ctataagtga gccaaaatat ttaagtgaaa ttaaagatta taaatttgag
     5701 ctaaaattaa gcattcaaga gctttttata caaatgcttc aaaatgaaaa tattaacaac
     5761 aaagctttta tttatgatca atttgattca agtgtgcaaa ccaatactat aaaagctgat
     5821 ggaagattag gtgctagtgc cattcgtatc aaagaaaatg gtgcaagtgt ggctatggct
     5881 atagaatgta actcacgctt aaattatgta aatcctaaaa taggagcagc tttagcagta
     5941 gcttcagcag gaagaaaagt tgcttgcacg ggggctaagc ctttggcaat aagtgattgt
     6001 ttaaattatg gaaatccgca aaatcctgaa gtgatgtggc aatttgcaca aggttgcgaa
     6061 ggcattaaag aagcttgtaa agagttaaat accccagtag taagcggcaa tgtttcactt
     6121 tataatgaaa ctgaaggcgt aagtatttat ccaagtccta ctatagtaag cgtaggggtt
     6181 ttagaagatg caaataaaac cttaaaagct agttttgaaa aagaaaattt aagtgtttat
     6241 cttttgggtg aaagtttagg ggaatttggt ggatctatgg taatgaaaat ccaagataaa
     6301 aaagtatcag gaagtcttaa agagcttgat tataaagctg aaattgcact ttgggatttg
     6361 ctttataaag ccaatcaaaa ttctttactt gagtgtgcca atagcgtagg aatagggggt
     6421 attgctatga ctttggcaaa aatgtttgct atttctagtg tgggtgtaaa tttaacaagt
     6481 ggttttgatg atgaaaaaat gatttttgat gagagtgcaa gtcgtgctat agtagggctt
     6541 agcaaagaaa atgaagaagc ttttttaaat ttagccaaag aatttggagt aaaagcttat
     6601 aaattaggtg tgagtacaag ccaaaaacat tttaaacttg ataacattga gttaagcaag
     6661 gctgaacttg acaagcttta ttttgaaagt tttaaagagc aaatccaatg actttagttt
     6721 taattatact cgttattttg gtgttttact ggtattataa aacttgggga aaacaggatt
     6781 ttttaaactc agctacaaga ggagccaaag gctttgctaa gggttttgct cgtggggtta
     6841 tggaagaaag aatggatgag tttaaaaggc gtatgaatta ctatgttatc gcacttttgg
     6901 caaaaattgc aaaaagtgat ggtagggtaa gtgaaaatga agctgaaatg atcaaagatc
     6961 ttttagatgc aaatgccaaa gatgaaaaag aaagagcttt tttaaaagca agttttaatg
     7021 aacataaaga aaatttaagt gatgcttttt atgtggcaaa agatttttta aaagaagtgc
     7081 ctttgcctaa aaatgagcgt tttaatgtct tgcgtgtgct tgtttttatg gctttaatcg
     7141 atgcagattt taatgctaaa aagcgtgaaa ttttagagca aatcgctaaa gcctttgata
     7201 tagcaaaaag cgaattagac gcttttatag caagtctttc aaatttaaaa agttctaaaa
     7261 aagaattaag tcttgatgaa gcttttacta ttttagaact tccaaataat gcagatttaa
     7321 atgcggtaaa aaaacaatac cgcaatttag caaaaaaata tcatcctgat attttaaatg
     7381 caaacaatgt tagtgaagaa aagcttaaaa tcggtgtaga gaaatttcaa aaaatcaacg
     7441 aagcttacga aaaagttaaa aaacatttag aaaggtaaaa atgagagcat tacttagtgt
     7501 gagtgataaa gaaggcatag tagaatttgg caaagagctt gaaaatttag actttgagat
     7561 tctttcaaca ggcgggactt ttaagctttt aaaagaaaat ggaataaaag ttatagaagt
     7621 gagtgatttt acaaagagtc ctgagctttt tgaagggcgt gtgaagactt tgcatcctaa
     7681 gattcacggt gggattttgc ataaaagaag cgatgaaaat catatcaaac aagcaaaaga
     7741 aaatgaaatt ttaggcattg atctagtttg tgtaaattta tatcctttta aaaaaaccac
     7801 tatcatgagt gatgattttg atgaaattat agaaaatatc gacataggtg ggcctgcgat
     7861 gataagaagt gcagcaaaga actataaaga tgtgatggtg ctttgcgatc cgcttgatta
     7921 tgaaaaagtg attgagactt taaaaaaagg tcaaaatgat gagaattttc gtttaaattt
     7981 gatgataaaa gcttatgagc atacggcaaa ttatgatgct tatattgcaa attatatgaa
     8041 tgaacgcttt aacggaggtt ttggagcgag taaatttata gtagggcaaa aagtatttga
     8101 tacaaaatat ggagaaaatc cacatcaaaa aggggcttta tatgagtttg atgccttttt
     8161 tagtgcaaat tttaaagctc ttaaaggcga agcaagtttt aataatctaa ccgatattaa
     8221 tgcagcttta aacttagcta gtagctttga taaagctcca gctattgcta tagtaaaaca
     8281 tggaaatcct tgcggttttg ctataaaaga aaatttagta caaagctata tacatgcttt
     8341 aaaatgcgat agtgttagtg cttatggagg agtggttgca atcaatggga ctcttgatga
     8401 ggctttagca aataaaatca atgaaattta tgtagaagta atcatcgcag ccaatgtaga
     8461 tgaaaaagct ttagccgtgt ttgaaggtaa aaaacgcatt aaaattttca ctcaagaaag
     8521 cccgttttta atccgcggtt ttgataaata tgattttaaa catattgatg ggggttttgt
     8581 atatcaaaac agtgatgaag tgggcgaaga tgagcttaaa aatgcaaagc ttatgagtca
     8641 aagagaggca agcaaggaag aattaaaaga tcttgaaatc gctatgaaaa tagcagcgtt
     8701 taccaaatca aacaatgttg tttatgtaaa aaatggcgct atggtggcta taggtatggg
     8761 tatgacaagt agaatcgatg cagcaaaggc agcaatcgct aaagctaaag aaatgggact
     8821 tgatttgcaa ggttgcgttt tagcaagtga agcctttttt ccttttagag atagcataga
     8881 tgaagcaagt aaagtagggg ttaaagctat agtagaacca ggcggaagta taagagatga
     8941 tgaagtggta aaggcggctg atgagtatgg tatggcgctt tattttacag gagtaagaca
     9001 tttcttacat taagtttaat ggaatgttat gttttttaca cataattcaa taaaaattaa
     9061 ataaattatg tgtaaaatat ttccgaaaaa ttttattttt aggaaactat gatgtttaaa
     9121 actataggat ttaaggtttc tgctgcaatt tttgtggtgt tgcttataag tttcattgta
     9181 atgcaagtga ttttaaattt ggattttaaa aatactgcca ataaaatgag cagggcaaat
     9241 ttaaataccg taagtacttc tgtttttcaa acaatgagaa tggctatgaa tttaggagat
     9301 cctgaaaaaa ttaaagaagc cattgaagat gtaaaaagta tagagggtat tagtgatatt
     9361 aaaatttatc cttcaaaaga tactatagat ctttttgaga tgaaagcccc tcaaatttca
     9421 aatgataagc gtattataga acaattttca aatcctaaaa ttcaagcttt agaagaaaat
     9481 ataaatggtg ttgtgtattt aagattgata cgccctttga ttgcagatga aagttgtgtt
     9541 acttgtcatg aaatgctaat gcaggaagtg tgattggggt tatggatata tcacattctt
     9601 tagaaggtgt ttaaaaagat ataagcaaaa ccggtcaatc ttatattata atatttacta
     9661 ttgctttgat ttttaccctt tgtggtggtt cttttaatgc ttaaagttgt tgttggaaag
     9721 cccgttttag agcttttaaa tcatgctaaa gaattagctc aaggaagcgg caattttaaa
     9781 agctcgtatt tcagttaaag gtcaagatga aattgcttta gcttgtggat atatcaatca
     9841 atttatcgaa aaaactcaca aggcagttag cagtgcaagt cataatttaa aaaatgtaga
     9901 aaaacaaagc aatcttttaa attcaaatgc tattttttaa gtgatatcag ttcacaaagt
     9961 cataagcaaa tagatcaaag ttttaaactt ggtgcaaatg ttggtaatga acttagagaa
    10021 cttgctagtt tgtcaaataa ggcaaatagt gccaatgaaa aatccttttt attattagag
    10081 caaatgctta aatctttgtt taatgttgct aataaagtat caatagtatc ccaaaatgaa
    10141 aatgaattgg ctaaaaaagt tgaaaacatg gtcaatcaag caggtagtat acaaaaagca
    10201 actcgaatga tggataagat cgcagataaa acaaaattac catccctaaa tgctggcata
    10261 gaagtagcta gggctggtgc atttggacta ggtttttctg taattgctga ggatgatagg
    10321 cagttggctc agaacagtga agaatttttg ggaaatgtag ctcaaattac aaaagagctt
    10381 ttgcaaagta ttaatgaggt taacgcagaa ttaaagaaaa atactcaaag tatacaagct
    10441 ttaaatgatg acaccgcttt attggttgat gatgctaatg aggttaaatt atgtaacgaa
    10501 gatgctaggg ctttggtaac tcaatgtact gaaaaaataa aaatttccca agagaatata
    10561 taaaatttac tttctcgtat gcaagaaaat gttgaagtaa gtgaaaagaa tgaagaaatt
    10621 tctaaaattc tacttcaagt tgcagatgag ttaaaaatag tgtgtcataa tctcgaaagc
    10681 gaacttaacc aattttaaat ttaaaggaat aaaatgaaaa aaacgcttca aattgcttta
    10741 gctgcaactt tttttgcagg ttgtgctagt acttctgtta cttcatctac ttctaaaggt
    10801 aataatgaac ttgtacaaga tcagcttttc aaaatagaaa aaattatagt taatggtaaa
    10861 acttttgatc caaaaaacgc agaggaaagt ccaaatatta gttttgaaaa taataaattt
    10921 tatggttatt cagggtgtaa tcgttttttt ggttcttacc aaactaaggc ggatactttg
    10981 caaatcgaag gtgatcgcgt agcttcaact caaatgcttt gtcatccaat ggatgtaatg
    11041 gattttgaaa attctttcct ttcaaatttc aaaggaattt ttaaaatttc aaatgaaaat
    11101 ggaaaacttg ttttaagtaa tgatgaaatg aagatctttt ttaaataata ccctaaagcc
    11161 tcgaaatatc gaggtaatct tcttaaattt gacaaaagtc taaaaaatga tacaattata
    11221 attttattat caaaaaaggt agttaaatga taaaatcaat tcctgaatgg agtgagcaag
    11281 aatacctcat gctttcttta ccccatgaaa aaagcgattg gaatccctac ttagaggaaa
    11341 ttttgcaaag ttataaagaa tttgtaaaag tggtaagtga atttcaaaaa gttttactta
    11401 tagctcctaa acagagtgat tttgaaaatt ttaaagatat aaaaaatgta gagtatttta
    11461 aatgtgatac caatgatact tggatacgcg attttggagc tatagatata gtagaaaatg
    11521 gtcgtttaaa agctcttgat tttactttta acgcttgggg aaataaattt caaagtgagc
    11581 ttgataatgc tgtaaattct aagcttttta aagaaaaatt taaagaggag cttaaaaagg
    11641 ttgattttat tttagaagga ggaagtattg actttaatgg agagggtgtg atgcttacaa
    11701 gctctcattg tcttttaaat gaaaatagaa attctcatct aaacaaaacc caaattgata
    11761 taaaattaaa agaaattttt ggtttaaaac aaattatttg gctagaaaat ggtttcataa
    11821 aaggtgatga tacggatcat catatcgata ccttagcaag atttatagat aaaaatacca
    11881 tagcacattg tatttgtgaa gatgaagagg atgagcatta tttgcctttg caaaaaatga
    11941 aagaagagct taaaaaaaca ggctttgatt tagtagaact tcctatacct aagcctttat
    12001 actatgaagg aagaagattg ggcgcaactt atgcgaattt tgtttttata aataatgctt
    12061 taattgtgcc tttttataag gataaaaatg atgaaatcat agctaaaaga ctttctaaag
    12121 ctttacctag tcataaaatt ataggagtag atgcaagagt gtttttacga caaaacggtt
    12181 ctttgcattg ttcttgtcaa aatcgtttca aaggtttaag atgagtttgc aaaaaaaagc
    12241 aactcttgta gcaagtttat gtgccattgt tttagccttg gttaaattta tagtaggctt
    12301 aacaagtggt tctgttgcag tactttcaag tgcgattgat tctttaatgg attttgctat
    12361 ttctgctttt aattttttgg ctcttaaaaa aagctcacaa aaggcgaatg aaaattataa
    12421 ttttggtttt tctaaaattg aagctttaat gggtttgtta gaaggtgttt ttatagttgg
    12481 cgtggggatt tttatttttt atgagagtat tttaaagatt tattataaag aagaaattaa
    12541 agatttaaat tcaagcatct atgtgatgat ttttgcttta attatgactt tttttcttgt
    12601 acttttttta aattatgtag ctaaaaaaac caaaagtttg attatagaaa gtgatgcttt
    12661 gcattacaaa acagattgct taaccaatgc ttgtacttta ggggctttgg ttttgattta
    12721 ttttacaaat ttacatatta ttgatgctat ttttgggata gtgatcagtc tttatacggc
    12781 attttctgct tttaaaatca ttaaaaaagc tttagctttt ttaatggatg aggctttacc
    12841 taaggaacaa gtggataaaa tttgtacttt gatttctaat aatcctgaaa taatttccta
    12901 tcatgaatta aagacgcgta aaactccaag ttgtaattat ttaagcgtgc atttggtttt
    12961 ttgccctata atttcgcttt taaatgcgca taaaatttca gatgaaatag aagaaggtgt
    13021 gcgtaagatg tttgaaaatg aaaaatggga tatacaaatt catttagatc cttatgatga
    13081 tgcagaacaa gaaaggcaaa gacaatgaaa atcgctttaa tacaacaaaa atttcattta
    13141 aataaagaac aaactataaa aaaaacttgc gaatttatag aagaagcctc taaacaagga
    13201 gctgagcttg tttgcttagg agaacttcat caaagtgagt atttttgtca aagtgaaaat
    13261 gtggattttt ttgactatgc taatgattat gaaaaagatg tgaaattttg ggcaaatata
    13321 gctagaaaaa atcaaatagt gcttattgct tcattgtttg aaaaacgaag tgccggactt
    13381 tatcataata ctgcagtggt ttttgaaaaa gatggttcta tagcaggcaa atatcgcaaa
    13441 atgcacatac ccgatgatcc ttgtttttat gaaaaatttt attttactcc tggagatttg
    13501 ggttttgaac ctataaatac aagtttaggt aagcttggag tgcttatttg ttgggatcag
    13561 tggtatcctg aagcagcaag aattatggct ttaaaaggag ctgagattct tatttatccc
    13621 acggcaattg gttggtttaa taaggataaa gatgaagaaa aacaaagaca gctcaatgct
    13681 tggcttggcg tacaaaaagg acatgctata gctaatggtt tatatgtagt agctatcaat
    13741 agggtaggtt ttgaaaaaga tgtaagcggg gtagaagagg gcattagatt ttggggaaat
    13801 tcttttgttt ttggccctca aggtgaagaa ctttgtcttt tagattctca aaacgaatgt
    13861 gtaaaaatca tagaaataga taaaaaaaga agtgaaaatg tgcgtcgttg gtggcctttt
    13921 ttgcgagata gacgcataga atattttgca gatttaacta aaagatttat tgattaaatc
    13981 aataaatctt atttgttttg tatattttca agatagcttt ttatttgctc tttttcttgt
    14041 tcgtttaaat ttataaaact tatttcttta agtcttgata aaagcaaatt atcttctaaa
    14101 atttcatttt ttcctatttc taaagaagtg atgacgctag aacttatgag aagtctttgg
    14161 gttgcatctt ttcttaagcc ccatatatta tgtatggcaa tattattatc tgtaatttgt
    14221 cctgcataaa gcataatatg tccaggtaaa taaagtaaac taagataagc tttcccaaag
    14281 cggtttaaaa aatctttttt ttgagaattg ctaagagtgc ttatatcaaa atgattaaaa
    14341 gaattttttt gtgcagctga atttcttggt agataaagtc caaaagctga aaagatatca
    14401 cgagttagta aagaacaatc tctttcaaaa ttataaccgc cccagccata aggcaaattt
    14461 aaaacttgtg aaagttgatt ttttaaattt ttatcattga attgtaaagg aaatttagat
    14521 acatcttttt tagaaatttt atatttttta gaacctattt ttccataaaa atagttttta
    14581 tcttctttgt agtaaggata gatagcacca attctacttt caaagaaaaa tttaccatcc
    14641 tcgctataga tagcaaattt ttcttttagt ggtgtgataa agttgagatt ttcatagatt
    14701 ttcgctctat cgtttgagaa aaattccaaa tttttacttt caacaaatcc aaatccagct
    14761 tcacctaaaa caaaagcata acgcttatct ttactaaaat gtgaaattaa gacaggggct
    14821 ccagtattta aaatgccatc gcttgcatag tcaaaaggaa ttccttcatt ttcaaaaaaa
    14881 ggatttttta agatagctct ttgggttgga agatttttaa tgattgtatt ttggataatc
    14941 aaagcttttt gattaagttt gccaaattct tggatatttg cgttatttat agcattttta
    15001 aaccatgaaa gcggaataat ttgtttattg aaaaaataat aagtattttt tgaatttaaa
    15061 tataaaggaa aggaccaaaa aatattttgt cctttgtagt ttttaaatga atcatgccaa
    15121 gggttaaaga aatatttttt atatcgtttt gcatcaaaat taatattgta agtaaattgt
    15181 ggtaaaatgc ttacattttg ttcgtattca agttttgcat aatgttgatt ttcatttttt
    15241 tgttctaaat tttcatgatg aagcgaagtt aaattttttg ttgaacaagc tgttaaaaat
    15301 agcactataa aagtaaaata taaacaagat ttcataatca accttttaga aaaaatagtt
    15361 ataattaaag ctaaggaaat ataatgcttg ataaactaga aaaaatttta gcttatgata
    15421 atgttttttt aagtggtggc gctggagttg gtaaaagctt tttgacaaat gagcttatca
    15481 aatcttatag aaaacaaaaa aaattagcca tagctcttgg ttctagtgct ctatcggcgt
    15541 ttaatatagg cggtgttact ttacacagct ttttttgttt agggtattgt gatgatatga
    15601 tgaaattaag cgcattggat cgcaatcaaa aacaaaaaga aaaattaaca aaacttaaag
    15661 agcttttaaa aacgattgag cttattatta tcgatgaaat ttccatggtt agcgcaaatg
    15721 tttttgaaat gataggcttt agacttaaaa attctcaatt taatggaaaa attttagttg
    15781 ttggagattt ttttcaactg cctccagtaa ttaaagaaaa aaaagaaact ttatttaacc
    15841 attcttatta tgctttttct tcattttttt ggcaagattt aaattttaag aatattaaac
    15901 tttctcaacc taaaagaacg caaaatatgg aattttataa ccatttatct ttgattagac
    15961 aaggtttttt agatgaaaaa attttaagct tttttgaatc tttgcgaatt gattataaag
    16021 aattagaaaa tttagaagat gattatactt tactttgtgg tatcaataaa aaagtaaaca
    16081 atatcaatca agaaaaatta agcaaacttg agaccccgct tgtatgcttt aaggctcagg
    16141 ttaaaaaaga agataagaga ataaaagatg aagagcttga ttcttggatt agaagcttaa
    16201 atatattgga agaattaaat attaaaatag gcgctcgtat tattttttgc gtaaataatt
    16261 gggataagaa ttattataat ggagagcaag gtattataga agatattctt tatgaagagg
    16321 agaaaattta tattagcatt attaaaaata atgggatgaa aattttactt gaaccttata
    16381 cttttttcat ggaagaactt gagcaatcag gtaaagattt tgttgttaat attctcgcaa
    16441 gtgttacaca atttcctatt aaattagctt atgctattac tatacacaaa tcacaaggta
    16501 tgagtattga aaaattagtg tgtgatattg atcatatttt tgaaaatgga cagctttatg
    16561 tcgctctttc tcgcgctaca aacccaaata ctttaaaaat ttattctaca aaaaagataa
    16621 attttggatt ttattttgct aatattttaa aaatagattc taatgtgatt gaattttata
    16681 aaaaacataa ttttttagat ctcgaaatac aagaacaaat catttaaagg cattaaatga
    16741 aaaaaatatt tttaagtgtt tttttggttt tgagtttaaa tgctcaaaat cttgaaatag
    16801 ataaaataag aacagatttg tattctaaaa gtgggacaaa tgttcttaaa aaagtcgaaa
    16861 tttctttgga atttgatggg aataatttaa aagaaaatga aaataagtta attgatgctg
    16921 taaatacagt aatttcaggg tttttttacg aagatatttt tacagaaatt ggaaaaaata
    16981 atttcaaaaa aactttagaa aaatttttag ataagaagta taagattgaa ttagatgata
    17041 tatatatcat atctttaagc ggagtggaaa aatttgattt agaggagttt aaacgctttt
    17101 tagaaagtac tgaggctaaa gagaagggta tgggtagcga ggtaaaaaaa gcacttgaaa
    17161 acttagaagt tcctaaaact caagttccta gtgttgaaaa gatcccaact cctagtgttc
    17221 caaatttaga agtcaagcaa gttgaacagc ttttcaaaga tccagatgaa gaaaataaaa
    17281 atgacaatgg agaaatcaat atagataatt taaatacacc taaaatgact ccagatatag
    17341 aagaaaaaat taaaagagat ttaatcgcca atcctccaca aatattcaaa gaaaataacg
    17401 caagcaagcc ttatcatttg ccacaaacag gctatgatat aaagcttgat gaaaattcaa
    17461 cgcaaaatta gcgaactata tcataatttt gcggaatttt tgccttgaaa atatcggagt
    17521 tgatttttgg atttttaatt tgattgttta gattgattat aacatcattt tcaaattcat
    17581 ctttatagga tatgctttga atttgctctt gattaagctt aattgtatag tttatattat
    17641 catattttgc tgcaagttta tccttatcta taagacttgc ttttttgaaa atttcattaa
    17701 gatttggaat gttatcaaga tgagagaaaa tgacttgttc tagatcgtgc tctactatgg
    17761 ttacttgatt tttgttgata taaatctctt ttttactagg agtatcataa ctccaatatg
    17821 cttgatcttt gctcagtata aaatgcccag aataagaaag tgtagagttt ttggatttca
    17881 ctatttgggt aaaattgctt gaaaaggtat taaaattaag atcaagggca aaaagttgtc
    17941 ctataaaaat aaaaaatatc aagaatgttt ttttcattta ttttccttaa aaaaatatat
    18001 tttttatgtc attctagcta attttaatta aataatcgtt ataatgatag tttgaaaaat
    18061 ttataaaggt ttaaaaatgt ttttaaatac tttaaaagcc gtgtttggca caaaaaatga
    18121 tcgtgaagtt aagaaatatt tcaagcgtgt agcacaaatc aatgctttag aaggcaacta
    18181 tcaaaattta agcgatgatg aattaaaagc cgaatttgca aaatttaaag agcaaatttt
    18241 aagcggagaa aaaaacgaaa atgatgtttt aaatgatgtt tttgctatag tcagagagac
    18301 aggtaagaga actttaaata tgcgtcattt tgatgtgcag ttaatcggtg gtatggtttt
    18361 gcacgatgga aaaatcgcag aaatgaaaac aggagaaggt aaaactcttg tagcaacctt
    18421 acctgttgtt ttaaatgcca tgagtggcaa aggcgtacat gtcgttacag taaatgatta
    18481 tctagccaaa agagatgctg agcaaatgag tgcgatttat aattttttag gttttagtgt
    18541 tggcgtggtg ctttcttctc aaaatagtga tatagaacac aagcaagctt atgattgtga
    18601 tattacttat ggaaccaata atgagtttgg ttttgattat ttgcgtgata atatgaaatt
    18661 ttcaaaagct gaaaaagttc aaagagagca taattttgtt atcgtagatg aagtagatag
    18721 tattttaatt gatgaggcaa gaactccgct tatcatcagt ggtcctacaa atcgtacttt
    18781 agatggttat attaaagcca atgaagtagc taaacaaatg caaaaaggtg aagcagtttt
    18841 accccctgca aaacctgagg gtgattttgt agtagatgag aaaaatcgta atattttaat
    18901 tacagaagca ggtattgcta aggctgaaaa actttttggc gtagaaaatt tatacagtct
    18961 tgataatgct atcttagctc atcagcttga tcaagcctta aaagcacata atctttttga
    19021 aaaagatgtg cattatgttt taagaaataa tgaagttatc atcgttgacg aatttacagg
    19081 gcgtttaagc gaaggacgtc gttttagcga aggattgcat caagctttag aagctaaaga
    19141 aaatgtaaaa attcaagaag aaagccaaac tctagcagat attacttttc aaaattattt
    19201 tagaatgtac aataaacttg caggtatgac aggaactgca caaacagaag cgactgaatt
    19261 ttctcaaatt tatagtttag atgttatttc tataccgaca aatattccta ttaaaagaca
    19321 agataaagat gatcttatct ataaaactca aaatgaaaaa ttcaaagctg taattgaaga
    19381 gattaaaaaa gccaatgcta aaggtcagcc tgtacttgta ggaaccgcaa gtatagagcg
    19441 cagtgaagtt tttcacaata tgcttgtaaa agagaaaatc cctcatcatg ttttaaatgc
    19501 taaaaatcac gagcaagaag ctttgattat ccaagatgca ggtaaaaaag gtgctgtaac
    19561 tatcgctaca aatatggcag gtcgtggtgt ggatataaaa atcgatgatg agattagggc
    19621 tttgggtggg ctttatatca tcggtacaga aagacatgaa agccgccgta ttgataatca
    19681 acttcgtggt cgtgcaggaa ggcagggtga tcctggaata agtcgttttt atctaagttt
    19741 agaagataat cttttaagaa tttttggtgg ggatcgtatt aaaagtatta tggatcgctt
    19801 gggcatagaa gagggcgaaa gcatagaatc aagaatcgtt acaagagcgg ttgaaaatgc
    19861 gcaaaaaaaa gttgaaagct tgcattttga aagcagaaag catttgttag aatacgatga
    19921 tgtagcaaat gaacaaagaa aaactattta tcgttatcgt aatgagcttt tagatgaaaa
    19981 ctatgatatt agagctaaaa tttctcaaaa tatcgctgaa tatagcgcaa atgtaatgaa
    20041 tgattatatg cttgacgaaa gcggttctaa tgtaaatttt gaaaatttga aagcaaaaat
    20101 tttgtatgaa tgttcaactc agattagtga aaaagatttt gagaatttaa gcgtcattga
    20161 aatgcaagac aagctaagtc aaattcttga aaattcttat aatgaaaaga tgttaagact
    20221 tgagattaaa gaattgcgta atatagagcg tattttatat ttgcaagttt tggataatgc
    20281 ttggagagag catttgtatc aaatggatat tttaaaaaca ggaataggac ttcgtggata
    20341 caatcaaaaa gatcctcttg tggaatataa gaaagaaagt tataatcttt tcttggagtt
    20401 ggtcaatcgt attaaatttg atagtattaa actacttttt agcgtgcaat ttaatcaaga
    20461 agaggcgcaa aatttagaaa ataaagccaa tgaagaaaat gaaaagctac ttcaaagctc
    20521 agtagaaatg ggcgcaagcg aagataatct tggcgaagct gaatttaaaa aagttccacg
    20581 caatgctcct tgtccttgcg gaagtggaaa aaaatttaaa gaatgccatg gaaaaagtgg
    20641 tcctaagcaa ggaattttag cttgaataaa agcgttttaa aatatttact ttttaagtat
    20701 ttaagatttg ataaagagca accctttatc aatctttcta tgcttttggc ctttttagga
    20761 gtttgtgtag gactttgcgt tttgcttgta gctatggcaa ttatgaatgg ttttgataaa
    20821 gaatttgaaa aacgcttttt tgtgatgaat tatcctatta ctattttgcc taaattctac
    20881 gctcctgtaa atgatgaatt tatagatgag ttaagaaaaa catttccaaa tttgttattt
    20941 agcccttatt taagcactca agttgttgta aagggagata atcgttttga aggtggtgtg
    21001 ctttttggcg ttaattttaa tgatgaaaaa aaaataaacg aagtggttgc taaagcttta
    21061 aaggatgaga atttaagtgg ttttgatata cttgtaggat cagcacttac tgatgaattt
    21121 ggtttgcata aaaatgacaa actttcactt attttttcaa atcttaatcc tagtggattt
    21181 tctttagtac cgcaaactaa acgttttgat gttaaagcgc gttttacttc agggcttgca
    21241 ttttatgata aagcttatat gtacacagat gttgatgcat tgaaaaaagt acttggaata
    21301 cctaaaaatc caaattatga tggaattcat gtatatagcg ataatgcttt taaggatgtt
    21361 gaaaaaatta aatcttattt aaaagatgat tatgctgtgg tgggttggtg ggagcaaaat
    21421 aaaaattttt tttcagcctt agaacttgaa aaaagagcgc tttttatagt gttgatgctt
    21481 attattttgg ttgcaagttt aaatatagta agttctttat tgatgatagt aatgaatcgt
    21541 cgcagtgaaa tagcactttt acttgctcta ggtgcaagca aaaatgaggt aaaaaagagt
    21601 ttttttgcct taggtatgct tattggtggt ggtggtatga tagtgggtgt ggtacttgca
    21661 ttttttgctt tatggctttt gggaaatttt gatattgtaa ctttacctgt tgatgtttat
    21721 ggaaccagta aattaccact tgatttgtct ttaatggatt tttctttaac cattgtgggt
    21781 gctttaataa tcatagcttt atcatctttt tatcctgcaa aaaaagcaac tcaaattaat
    21841 attttagata ctttaagaaa tgaataaatt gtaattttgg agatttttat tgtctttgtt
    21901 tactcaaaaa aataagaatt ttaaaccttt aaaacctcta tcaaagtcaa aaataatcac
    21961 taatttaatt cttttgattt tatttttaat attgttttgt tattgtagtt ttagtataag
    22021 tgcttatcat tttgatttta gcgcaattgc aacctataaa gaaaaatttc ttcaaggttt
    22081 tttaaatact ttaataatca gttttttttc tttattgttg agtataattt tgggtggagt
    22141 tttttgtgct ttttctttaa gttcgattgt ttttttaaga tttttatcta cattttacat
    22201 agagcttgtc agaggaaccc ctttactagt gcaggtatta ttgatatatt atatcattgc
    22261 aaataattta ggacttgata atcgatatgt ggctggagtt attattttat catgtttttc
    22321 tgctgcttac ttagctgaaa tatttagagc tggaatttta agtatttcta tatctcagct
    22381 tgagagcgct agggctttag ggttaaaaga gatgcaggtt tttgcgtatg taatttttcc
    22441 ccaagcttta aaaaatattt tagcaccgct gagtggacaa tttgcaaatt taattaaaga
    22501 tagttcctta ttaagcgtta ttgctgtaaa tgaattaacc caaagtgcgc aagagataaa
    22561 ttcttatact tttgctactc ttgaagctta tgtaattttg gctattacat atcttgtttt
    22621 gactttacct ataagtatat tttctcgtta tttggagaga aaatgccaaa aatgatttaa
    22681 aaaagcttga caaatagagc taattttggc ataatcacat ttttatttca gaaaatgtct
    22741 cgttagctca gccggtagag catctccctt ttaaggaggg ggccgttggt tcgaatccaa
    22801 cacgggacac cattata
//
LOCUS       DARGEX010000012        22132 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.012, whole genome shotgun sequence.
ACCESSION   DARGEX010000012 DARGEX010000000
VERSION     DARGEX010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22132
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.012"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(29..598)
                     /gene="efp"
                     /locus_tag="SF010_000396"
     CDS             complement(29..598)
                     /gene="efp"
                     /locus_tag="SF010_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG8229360.1"
                     /translation="MASYSMGDLKKGLKVEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDEDVGE
                     AKKWMIDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            714..1037
                     /gene="rnpB"
                     /locus_tag="SF010_000397"
     ncRNA           714..1037
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SF010_000397"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1034..1309)
                     /locus_tag="SF010_000398"
     CDS             complement(1034..1309)
                     /locus_tag="SF010_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229361.1"
                     /translation="MKQWLNNFKLALIQEDVDKLEILLDELDVKNFVKNLVKSQPSEE
                     MLKENVKDIFYQLQALLQEAIVLIDQKKKTKAFEIQKFQKALTYVRS"
     gene            complement(1290..1676)
                     /gene="fliS"
                     /locus_tag="SF010_000399"
     CDS             complement(1290..1676)
                     /gene="fliS"
                     /locus_tag="SF010_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG8229362.1"
                     /translation="MQNSLAYNAYSQNQAGIESPQKLIEMLYEGILRFCSRAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLDYEKGGDVAHYLSGLYTREIQLLSLANLENNEER
                     INEVINVTKGLLEAWREVHSNETMAQ"
     gene            complement(1687..3615)
                     /gene="fliD"
                     /locus_tag="SF010_000400"
     CDS             complement(1687..3615)
                     /gene="fliD"
                     /locus_tag="SF010_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG8229363.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYTSDSEA
                     ETIFKNLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKQGSLNQYLDSSGTGNKGL
                     DFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYDQNGVKGFKLNFSGDGSSDFSIKGNATILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLSTITNMINAANNSNN"
     gene            complement(3618..3983)
                     /gene="flaG"
                     /locus_tag="SF010_000401"
     CDS             complement(3618..3983)
                     /gene="flaG"
                     /locus_tag="SF010_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG8229364.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDRQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(4140..5942)
                     /locus_tag="SF010_000402"
     CDS             complement(4140..5942)
                     /locus_tag="SF010_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8229365.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(5939..6862)
                     /gene="hemC"
                     /locus_tag="SF010_000403"
     CDS             complement(5939..6862)
                     /gene="hemC"
                     /locus_tag="SF010_000403"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG8229366.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(6859..7248)
                     /locus_tag="SF010_000404"
     CDS             complement(6859..7248)
                     /locus_tag="SF010_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG8229367.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(7245..8954)
                     /locus_tag="SF010_000405"
     CDS             complement(7245..8954)
                     /locus_tag="SF010_000405"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG8229368.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(8938..10236)
                     /locus_tag="SF010_000406"
     CDS             complement(8938..10236)
                     /locus_tag="SF010_000406"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG8229369.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRKTSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(10236..11129)
                     /locus_tag="SF010_000407"
     CDS             complement(10236..11129)
                     /locus_tag="SF010_000407"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG8229370.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(11143..11679)
                     /locus_tag="SF010_000408"
     CDS             complement(11143..11679)
                     /locus_tag="SF010_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG8229371.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(11682..11945)
                     /locus_tag="SF010_000409"
     CDS             complement(11682..11945)
                     /locus_tag="SF010_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG8229372.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(12084..12641)
                     /locus_tag="SF010_000410"
     CDS             complement(12084..12641)
                     /locus_tag="SF010_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG8229373.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(12638..13483)
                     /locus_tag="SF010_000411"
     CDS             complement(12638..13483)
                     /locus_tag="SF010_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG8229374.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(13484..14608)
                     /locus_tag="SF010_000412"
     CDS             complement(13484..14608)
                     /locus_tag="SF010_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG8229375.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(14617..14928)
                     /locus_tag="SF010_000413"
     CDS             complement(14617..14928)
                     /locus_tag="SF010_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8229376.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(14942..15811)
                     /gene="sucD"
                     /locus_tag="SF010_000414"
     CDS             complement(14942..15811)
                     /gene="sucD"
                     /locus_tag="SF010_000414"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG8229377.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(15821..16984)
                     /gene="sucC"
                     /locus_tag="SF010_000415"
     CDS             complement(15821..16984)
                     /gene="sucC"
                     /locus_tag="SF010_000415"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG8229378.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTTEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(16985..17887)
                     /locus_tag="SF010_000416"
     CDS             complement(16985..17887)
                     /locus_tag="SF010_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8229379.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(17884..20088)
                     /locus_tag="SF010_000417"
     CDS             complement(17884..20088)
                     /locus_tag="SF010_000417"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG8229380.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILAAFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(20205..>22132)
                     /locus_tag="SF010_000418"
     CDS             complement(20205..>22132)
                     /locus_tag="SF010_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG8229381.1"
                     /translation="ELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASG
                     YVNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEK
                     KVGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYS
                     GILALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNF
                     NTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLSNPKI
                     LFSFSPLLKKFGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIV
                     KNKGIMEIHTQSDTASAKISSNNKEIHLKNLSYIYRKGSNSSNSTFDISTNTQNISFG
                     GANVALILPDSNKTLAFDRVEADLKGNALDLKGSRGNAKFELYYSSNDVNLNVSNIDD
                     NYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGVNQLISFIDTVPS
                     LLMFKSPTFNQKGLSLYDGKIIFNRKKDLLSVLAINLNGDSVDIYGLGSANLRLNTVD
                     FSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKT
                     PFNLIKNIIQLPANLLN"
BASE COUNT         7134 a         4351 c         2658 g         7989 t
ORIGIN      
        1 ttggaatagt ccaaaagctt tttttgtatt atttgttcgc tctttctata tactcaccac
       61 gcacggtatc aacgcgtata acttcacctt ctaacacatg aaaaggaatt tgcactactg
      121 cgcctgtttc caatgtagcc ggttttttat ttgatccttg agtatcaccc ttaaaatttg
      181 gagctgtttc gatgattttg agttcaacaa cttgtggaac ttctacgccg atagctttac
      241 cattatggaa aagcacgtct accatcatac catcaatcat ccattttttt gcttcaccca
      301 catcttcatc actaattgct acttgctcat aagtttgcgt atccataaat tgacaatttt
      361 caccatcatc ataaagatac tgcatagtct tatcttctaa atttggagct tcacatttat
      421 cccctgcatg gaaagttttt tcaagtacct taccatcgat aaaagatttg attttaatac
      481 gcacaaaagc aggaccttta cctggtttta catgctgata ctcaactatt ttaaaaggaa
      541 ttccatcaat ttctacttta agtccttttt ttaaatcacc cattgaataa gatgccataa
      601 atttccttta gtaaaaaaaa taaaaggtaa ttctatcaaa ttttaattga tatcacaata
      661 aaactgcttt atttgataaa aaaataagca aaattacgtt aaaatctaaa cttaaagcat
      721 agtaaatgct cgcttctttt ttagaagagg aaagtccgag ctgctaaaga caaacattcc
      781 atctaacaga tggctagggc aacctaaggg atagtgcaac agaaagaaaa ctaccacatt
      841 aaagtggaaa aggtgaaacg gcggagtaaa agcccaccag cgattttggt aacaatttcg
      901 gctatgtaaa cccaatgtgc agcaagaagg gatggttagt gtctttgttt taacccttcg
      961 cttgattttg tttgcaaaaa caaaactaga taaatgagca ttcttgacag aactcggctt
     1021 atcgctatgc tttttaagat ctaacatagg tcaaagcttt ttgaaatttt tgaatttcaa
     1081 aagctttagt ttttttcttc tgatcaatca atacaatagc ttcttgcaaa agagcttgaa
     1141 gttgataaaa tatatctttt acgttttctt ttaacatttc ttctgaaggt tggcttttta
     1201 ctaaattttt aacaaaattt ttcacatcaa gttcatcaag caaaatttca agcttatcaa
     1261 catcttcttg aattaatgca agtttaaaat tattgagcca ttgtttcatt actatgcact
     1321 tctctccaag cttctagcaa acctttggtt acattgatca cttcattgat tctttcttca
     1381 ttattttcta aatttgctaa agataaaagc tggatttctc ttgtataaag cccacttaaa
     1441 taatgtgcca catctccacc tttttcataa tctaaagtat ttataagctc tataaaaatg
     1501 gctgtggttc tttttacaaa atacactctt tgctctatat cttcatttct tatagctact
     1561 ttagctcttg aacaaaaacg caaaatcccc tcataaagca tttcaataag cttttgcgga
     1621 gattctatcc ccgcttggtt ttgagaataa gcattataag ctaaactatt ttgcatcttt
     1681 ttatccttaa ttattagaat tatttgctgc attaatcata ttagttatag ttgagagctg
     1741 ctgattaagc ttatttaaga tactttcata ctgcaaccat tgatttgcca ttgtatcata
     1801 tcttgtatca atcatagcct gagttgagtc tttagaggta tttaatgatt taatatcatt
     1861 tgtcaaactc tcatcatatt ttgtaattga accatctttt ccagtcatct cttgcaacgt
     1921 ggcttttaat tttgaaaaaa tacctttacc ttctataggt ttagaggtta tatttacatc
     1981 agacaaacct aattccttaa gaatggtagc atttcctttg atggaaaaat ccgaactacc
     2041 atctccacta aaattcaact taaacccttt aacaccgttt tgatcatagg attcaacctt
     2101 aacttttaaa ccttcaatac ctttgctgtt tatatgatta gctaaatttt gaagcaattc
     2161 ttcctctgtt tttcctgtta atttaaaatt agtaccatca gaatttttag ataaatcata
     2221 tgtttgatta ttaaaaacta tagtaaaatc tcctggttta aaatctaaac ctttattgcc
     2281 agtgccacta gaatcaagat attgattcaa acttccctgc ttaattactt ctcctgtgtg
     2341 attaatgtct tcgtatttag taatatttga aaaaaaactt tcagtagagt ctggatcttc
     2401 tttaactttt tgttcaaatt tagaagaatc aaaactcaaa gtgcctgcat catttaaact
     2461 taagccaaaa tcctgcatag aaagcataac cttagtgttc actttattac catttgcatc
     2521 ttcagtagtt ccatcaacaa cttgagaatc aaacaaatca gcaagaatgc ttgagcgtat
     2581 tgaatttact tcactgatgc cttgtaaagt tccttttgtt ccagtttcac tattatagtc
     2641 agttgcagca ttaagattgg ttactaaatc attataagca tccaccaaat cttgcatggc
     2701 ttttgtcaca ccttcaaaat cttgctgtac atcaaaatta atttcacctg ttttatttaa
     2761 agttaaagtc attcctacac caagatcggt aacagtgtta cttgatctaa acatcttaat
     2821 accatcaagt gtaaattctg cattttgcgc agtttggata tgcaaagaag catccttaat
     2881 accataacct tttttatcct tagctggatc aatagaactc gttgtatcta attcccatcc
     2941 aagatttttg aatattgttt ctgcctctga atcacttgta tacttaccat tcgaatcttt
     3001 ttttcccgca tagaaactta tcgcactgtc ttcgcctgtt tctttactgg ttaaagttaa
     3061 gcggtaagga gtgcctttct ctcctgtgtt tacaatctta gcaacaatct ctcctccact
     3121 agcttcatta attttatcag ctaaatctct ataggttgtg tttttatcta ccgtaacagt
     3181 atattctttg ccatttgaaa aaaaagtaag atcggtggtt ccagttaaat ttgcattaat
     3241 aaaaccactg tcatttgcta atcctttgct ttgatacaca tctttttgtg caagttgagt
     3301 aacattgata ttcatgcttt gtaaagcaac acccgaatta actgtaagac ttgctggagg
     3361 attatcgcta atacttccta caacttttct tttcgcaaaa accgtagcat cggctaatga
     3421 tgaaacagcc gtctgaaaac ttagtaattt agttttgatt tctgttaaat ctttttgttt
     3481 ggttgtattt tcttcaattt ttttagtata aggatcaata cgagcttttt gctctgcttc
     3541 ttttaattta tctatagtat cttgagttaa aaccccagaa ccaaatccta aactagatag
     3601 actaccaaat gccattttta actctcctta tcaaatatca ttcctatcac atccctaaaa
     3661 tactcagcta atctcatagc ttcttcgcta ggaatttgac ggatttccct tccagtgctt
     3721 ttttcagtca cgctaatata catagaaccg attttatcac tataaccaaa acgaacattg
     3781 gtatctagag aatccatttg ctcatttaac ttttttgtaa tatcagccaa cttttcactc
     3841 acacctcgtt gctgtcgatc atcgccttct tggccttgac ttctatcggt ttgaatgttt
     3901 aaactagcct gtgtctcact tgttctttgg ctaatgtttg ccaaagctgt atccatttgc
     3961 ccatttgcct tcgatatttc cattttaaaa tcctttttaa aatttcctat tgctagttaa
     4021 aagcttatat cgacaaattt ataaatttat gaacacctat aaagaaaatt ttatttttca
     4081 ataataaaaa aataataagc aaaaactgtg ccaaaatttt aaaataaatc tcaattatct
     4141 taaaaaattt caaatttatt aaaaagatct ggattatttt ctaaaatatt acgcaagatc
     4201 aaatcttcta tcacgctttt agtgcaatct gtttgcttag gccaagctct taaataaccc
     4261 tcagcttcac ctttagcact tgcatctact ccaagtcttt cttctttgat aaaaatatct
     4321 cttttagcat ctatattatt taccacacgc caaacaagca tataagaatt ttcaagctta
     4381 ttttcagcat ctaaaaacac taaaatccta aaatgttttt taaattctaa aagtttgtca
     4441 aaactttgtt cgattttttc ttttttatca agcaaaatac aaactatagg acttttactt
     4501 tctttataaa attgctttaa atttaaaagt tctaccttag ttttaaaaag ttctagtaat
     4561 ttttcatctt ctaaaatttc aagctcttca acttgtattt cttcgcaagc atcaagtcct
     4621 gctttacccc caaaacaaga attaggtgaa gcatgatcta attgatcaca aattccttct
     4681 gaaattaaaa ttttctttgt attaaaacga tctaacatat aaggaattaa agcatcataa
     4741 tctttcaaag aaggtgcatt tttatccaca aaaattgcat gcttaacaaa actcatttgc
     4801 cctactcccc aaaatgcatg cataatttgt tgcgcatgag cgggatattt tgcatcgatt
     4861 tttgctaaga taagattatg aaagacccca ttttcaggca tattataatc aattaaatca
     4921 ggtactgaag tttgaagcaa aggtaaaaaa attctttcag taccaagtcc catgatctta
     4981 tcttctaaag gaggctttcc tacaaccgtt gcttgataga tcgcatcttt tttagcataa
     5041 attttttcta ctttcatcac aggaaaaagt tcagcaggag tgtaaaaacc cgtatgatct
     5101 ccaaaaggac cttcgatttt aaactcttct aaatccacat aaccttcaat aaccacatca
     5161 ctatcataag gtataaaaat accattttca caaggagtaa tttttgcagg agttttttta
     5221 ataaaaccat aaagtaaaag ttcaaaaatt cccttaggta aaggtgcttg agaacaccaa
     5281 atataaagcg gatctccacc tatggctata cttacaggca tttttttaaa accagcattt
     5341 ttgtattcgt gataaaaatt tgccccatct ttatgaattt gccaatgcat taaaagttca
     5401 tttttatcac tcatttgcaa acgatacatt ccaagattat tttgagtttt atctaaattt
     5461 tgtgtataaa cttgccccat ggtaataaat ttacccgcat catcttccca agtttttagt
     5521 atgggaagtt cttcaagtga gtttaaaatt tcataatcat acaaggcttt attttttttc
     5581 agtcttttag gaggaatatt tttaaaactt aacaaattca taaaaaaatc catttttgct
     5641 ttaaaactcg taggaatatg aagcttggtg agttttgaaa tttcttcagc cacctcttca
     5701 taatcacgtc caaaagctaa atttaaagcc ttttcattgc aaaaagtatt catcaaaaca
     5761 ggaaatttat attgtttatt taatttttta tctataggat ttttaaataa taaagccttc
     5821 cctttttctc cttttttagc ttctatatag gctaaatgag cgatttcaag atctacatct
     5881 acaggttctt caattaccct taaaagatca ttttctttta aaatttgaat aaattctttc
     5941 atatcatact ctcagctttt tttaaaagtt ctttagcacc tttagcaata aactccttag
     6001 ccaaactctc tccaaaacct ttaaaatcat tctttttaat cattctctta tcttttaaaa
     6061 tttcacttcc atcgggtagt ccaagtaccg cacgcacgca aatttcatct cccaagagct
     6121 ctgcgttaat acctatagga acttgacaac ctccttctaa agtagcaata aattctcttt
     6181 caatgcttgt ttcaatcaaa gcattttcat catttaaaca ttttaaaagt tctaaaattt
     6241 tttcatcatt tatgctttct atacctaaag ctccttgaga agccgcagga ataagctcat
     6301 ctttgctaaa ttcataaaca aaattcactt gcttatctaa gtttaagcgt ttaattcccg
     6361 ccattgccaa aataatcgca tcaaaatcat tattttttaa tttctctata cgagaattga
     6421 cattaccacg caaagaaata atatctaaat caggtcttaa taataaaagc tgcatcttgc
     6481 gtctaagact agtagtgcct atttttgcac cttttggcaa agaaagaaaa tctttataat
     6541 tttgacttag catagcatca ttgctttgct ctcttttact taccgctgcc aaaactaaac
     6601 cttgaggaaa aaaactaggc acatctttta aactatgcac cgctaagtgt gcttcttttc
     6661 ttaacatact ttcttcaagt tcttttgtaa aaagtccttt accaccaatt tttgccaaag
     6721 gagaatcaag caaaacatcg ccttttgttt taaaaccttc taaaagcact tcaatttgat
     6781 gtgtattttt taaaatttgg gctacatgtt cactttgcca aagagctaat tgactttttc
     6841 ttgttgcaat aataagcttc attttctatc ctctataatt tcaacatcaa taatttcttc
     6901 attagaattt tgatactctt gcttggtgta ttgatatttt gatttagtta ttaatttcaa
     6961 agcaatacca aagaaaaata caaaaattcc aaaaacactt gtaataatcc ctggaaaaac
     7021 aagtaaaaac cctgcgataa caaaagaaaa ttgtgttaac atatccttta agccacccat
     7081 ttgaaattca agcatatttt tccaaaaaat tcccaataaa accgcaccaa aaatcatact
     7141 caaaagtatg aaaaataaaa aattaccaaa accaaaaaac actataaaaa gtatacttgc
     7201 aataatttca agtacaaata aagggcttaa acttaattta taattcataa cactttcttt
     7261 ttaagaattt ccataagttc atcagttttt ataagttctt ttatcaaacc ttctctttgg
     7321 ataagctcta tttcattctt ttctaatcct ttaccaacaa ctaacgcata aggaaagccc
     7381 ataagttcaa aatcattcat tttaacccca aaacgctcat ttctatcatc aagcaatacc
     7441 tctaatccaa gattagttaa atcctcataa agcttattgg caaattctaa agccttttca
     7501 tctttgagat ttgaaacaat aatttcaagc acaaaaggag ctaaagtttt attccaaata
     7561 catccttttt catcatgact tgcttcagta gctacagcca acaagcgtga aacacctatg
     7621 ccataacatc ccatgtaaaa aggctgactt ttgccatttt catctaagaa atttgcattc
     7681 atcgctttgg aatatttttg tcctagctta aaaatatgcc ctacttctat acctttactt
     7741 tgttttaatt ttgctccaca tttaacacag caatcccctt ctttaacttc aatcaaatct
     7801 ttaaaacgat ctttatttaa atttacaaca tcaataccga ttaaatgata atctttttca
     7861 ttcgcaccca taatcatttg cttttcgttt tcaagctcaa aatctatata aaaatctata
     7921 tcttttaatc ccacaaaacc tataaaacca gctactaagc cagctttttc caattcttct
     7981 tcgctcgcat cgactagttc aagggcactg caagcatttt gagccttaac ctcttgcaaa
     8041 tcatcacttc ctcttataaa aaacacaact aatttgcttt cattttcata aatagctttt
     8101 tttaccactg ctttaatcgt ataaaaagca ttgattttaa aaaattgtgc taaagaatct
     8161 atagttttaa tatttggagt gtgaaattta cttgcataat ttgcttcagg acgctcatct
     8221 tgacaagttt ttttagctct ttttgcagct tcaacattag ccgcataatc acaattttca
     8281 caaattaaaa tatcatcttc cccatttttt gctaaaacca taaattcctt agagccactt
     8341 ccaccaatag ccccactatc agcttcaact gctctaaaat caagccccat tctttgtaaa
     8401 atttgagaat aagttttata cataagctca aactcacgcc ctaaatcttc ttcattagca
     8461 tgaaaactat atccatcttt cattagaaat tcacgacatc ttaaaagccc aaatctaggc
     8521 cttgcttcat cacgaaattt aagtccaatt tgatataaat gcaaaggaag ttgtttatag
     8581 cttgtgattt tgttttttac caaagaaagc atagcttctt catgtgttgg acctaaaaca
     8641 aattcatttt cttttctgtc tttaaaacgc aaaagttctt ttccaaaaac attgtaacgc
     8701 ccactttctt gccacaaact tgcaggagtg ataaaactaa gatttacttc ttgtgctcca
     8761 gccttatcca tttcttcttt aactatattt ttaatcttgt ctaaaactct ttttcccaaa
     8821 ggcaagaaat tataaagtcc gctaccaatt tgttctacaa aacccgcacg cgttaaaaaa
     8881 atatgactag gtaaactcgc atcttttggc gcttctttta aacttggtgc ataaaattta
     8941 gtaaatctca tcattattct ccatatcaaa ttcacattta tattgattta aaccttcaag
     9001 attattttgc aaatcaaaaa cataacgcat agcattaatc actgtatcgc tttgcatttt
     9061 accttgtaaa tgtttcaaat ttacagtagg cgtgtgtaaa aaagccttaa aaacttgatg
     9121 aatcaacttt ctagcctctt ctttatcaga ttttttcaaa tatccttttt ttaacgcaat
     9181 ttcaagttgt ttatctgcat attctttagc ttgcaagcgt atagctttga taataggcat
     9241 caaagccaaa tcgtttaaat acctaaaaaa ttcacttgtt ttacgaccta ttatcccata
     9301 agccatacga gcttcttgtt ctcttagtgc taaatttttt tgaaccacaa tttcaagatc
     9361 atctacagca aaaacagata tattttcatt ttcattgata tcaatatccc ttggaactgc
     9421 aatatcaaaa aaataccttt tataagaaag ttcttctatt aaagaatttg taataatagc
     9481 atttggtgca ttggtagctg agaaaaaaaa ctcgtattga tttaaatatt tttttaaatt
     9541 ttctaaacta tcatattcgc ttaaaacacc aagtctctca cacaaatctt tagctttttg
     9601 taaatcacga tttaaaataa tcaccttagc acccgcagca attaaatgtt ttgccgcaag
     9661 ttctcccatc tctccagctc caataacaac agcttttttt tgcgttaaat ctgcaagttc
     9721 ttttgctttt gccacggcaa cgctagctac agaaatagaa tttttagaaa tttgagtttc
     9781 attgcgtacc ttagcagcac atttaaaagc actatgtact gctcttgaaa ggtgtactcc
     9841 acaaaaatta ttttttacag caaaagcaaa ggcatctttt aattgtcctg ctatctgagt
     9901 ttctccaacc accaaactat ccaaagaact tgctacagaa aaaagatggt ggattgctcc
     9961 actatcttca aaaatatcag ctttttcaag taaaatatct ttatcaacat cacaaagtaa
    10021 agccaaagat ttaacaataa actccgcaca ggccattttt acaaaagcaa caatttcaac
    10081 acgattgcaa gtgcttataa ccaaacattc ttcaatattt tcatgagtgc taatgatttt
    10141 taaaaactca ctttttttag cttcattgga aaagcttaac ttttccctta aggcaatatc
    10201 tgtattttta tgagtaaaag atatacaata atacattaaa attccctatc tatcatagct
    10261 ttaataatat cattaagctt gttattatca tatttttcaa ttgcttttct agcctttttt
    10321 gcataagttt tagcttctaa aatagctttt tctaaagctt tttgttcttc aaatttagtt
    10381 tttagccatt ctttttcatt ttcatttaaa tcttttttaa ataaagtctg caaatatatc
    10441 ctatcttgtt cttgtaaatt ttcataaaga taaatataag gcaaggtagt tttaccctct
    10501 ttaaaatcat tcatagcagg ttttccaaga attttttcat cactcttaat atctaaaata
    10561 tcatcaatca tctgaaaagc aagtcctaaa tttttaccat attctgcaaa atctttttca
    10621 tataatccag ccaaaatagc tccgcatcta gcacttgctt caatcaaaac agctgtttta
    10681 ttatagatca ttttcaaata agcttcttta ttgatattaa atttctctcc caaatcaaca
    10741 tccataagtt cgcctatagc aagctttaca acagcatctg aaataatact tgcaaatcta
    10801 gcatccattt tgcttaattc ataaaaggct tttgaataca aaatatcgcc caacataaga
    10861 gcattttttg taccaaattc agcattaaca gatcttgctc cacgtcttaa ttcactctca
    10921 tcaataatat catcatgtaa taaactagca agatgtatca attctatagc tgcacaaatt
    10981 ttaaaagcaa tctcactctc atctgcgata gctaataata atttagaacg taatttcttt
    11041 cctgatttta catttgaaag catatttaaa ataggttcat agccaagttc ttctaaaaac
    11101 tgttttatta attcatctat tttttgcact atcttttcct tgttaattgc tattattatt
    11161 ttctttactt gttaatggtt ttacctgagg ttcgttaaaa ttaatcatag gaacaacctg
    11221 attattttgc ggtggatttt gtaaagcttt ttttctcgga tctaaaaatt ctaccattaa
    11281 gcgagattcc ttatcttcta tataaaccgt aaaagttgcc aaacctttat tataaccact
    11341 aaattctaaa ataagtcttg ctctatcaat atgtggatta gtataatcag gtattaaagt
    11401 ttgagttacc caatctaaat ttcttcttaa actcatcaca aattgacgcg gatatttgcg
    11461 aaatttcgaa tgtacgatga tattagtatt atcaaacaaa gtccaataaa aatcaaaatt
    11521 ttgcacctta tcttcatagc ctatttcttt aatctgcaca ctagctctct catctttttt
    11581 aagtataaat ttataagtat aatcaaaagt tggttcagat gctaaaacat tactaaaaat
    11641 aaaaaaaata caaattaaat aggggcttat tttaaacaat tttagccttc gtgtcctaaa
    11701 atttttgcgc ccaattctat ataaatatca ttttgccttt cttctatgaa atcaccattt
    11761 tctaatatga aattttttac atccatttct gttagacctt gtttttccaa aagttccacc
    11821 atagcaatat gatcagcaaa aaattcctca aaaacttttt ctaaggctcc taaatttcca
    11881 ttttgtataa tttctataaa tttttctttt ggagttttat taaacatttc atcaaaaaaa
    11941 tccattaatt ttccttgaaa atataagttt ttgattataa aattttaatc gttaaaagta
    12001 gctaaattaa aataattaaa atttaaattt tatttgcaat gtgtaaaatt ttagaagtta
    12061 aattccgcat gatgcggaat ttattatgaa tgtggttttg cttgagtggc gtattttaca
    12121 cccagatcaa aagctttagc atttgcatca cgagtttttg caggaaccat atgaagcata
    12181 gtttctttta aaacatctaa atctatacat ttactcatat aagcagcaat tgcaagtgca
    12241 acaactgatt gagtagccac atttcctacc tcatctttag ctatggtaat aatagggatt
    12301 tcaaaaattt gccatttttt ataatcttca ctttcaggat gtactaaatt tggctctaca
    12361 actataatac ctccttcttt tacaccccca cgaaaacctt tataaccctt atctgcagtc
    12421 gaaagcataa aatctacttc cccttctaca gcataaggaa ataaaatttc tttatcatcg
    12481 atgataatat ccaccttagt agggccacca cgcacttgtg aagtgtaagt agaagcctta
    12541 aaagcttgac gaccttcttt aatggctgct tctgctaaaa tttctcctgc ggtgataaca
    12601 ccttgtccgc cttcaccgcc aaatcttaat tgatatttca ttttaaagct cctaaatcca
    12661 ccattctttt ttctttggct gcacgacgta cttcttcata agcgtggcag tattctggct
    12721 gagaattatc ttcatgtaaa attcctgttg gaaatttatc ttttctttct tcaaaatcca
    12781 tgctttcaaa tttagcttta tccacaacgc gatttttaat ccaatcaagc atagctacag
    12841 cttcgcccat tttgtttttt ctgcctagat tgatatgaca atttgaaaaa acatctacaa
    12901 aactataacc cttatgcgct aaagccttat aaattaaatt ttcaagctta ttagcttcga
    12961 tcacattacc ccttgccaca aaagaagctc ctgcagcttt agttaattca cacgcatcaa
    13021 aattagggtc aatatttcca aattgagctg ttactgtata aaaacctttt ggagtagttg
    13081 gagaagtttg agaattagta agcccataaa taaaattgtt gattacaata tgagttaaat
    13141 caatatttct gcgacaacca tgtatagtat gatttccacc aattgccaaa gtatccccat
    13201 ctccgcttac tacaataaca tgtttactag gattggctag tttaatgcct gttgcataag
    13261 ctattgctct accatgagtt gtatgaactg tattacaatt tacataagaa ctcattctgc
    13321 cactacaacc tatacccgaa acaagacaaa catcatccat attccaacca agtttttcta
    13381 tcgcgcggat aatacatttt aaaacaacac catcgccaca tccccaacac cattgagtag
    13441 gcattttatc tactcttaga tattcatcat aattaaaagc catttatata ttctccttta
    13501 ccttagcaat aatttcactt ggagtgatag gacgaccatt tgcacggtgc aaactaataa
    13561 aatcgcgacg cgaagttact ctttcaatct cttcaagata ttgtcccata ttaagctcgc
    13621 ttaccattac ttttttaaat ttgcttacaa cttcagcgat ttttttctca gccactggat
    13681 aaagagtaat cggacggaaa agccccactt taatcccttg ctctcttaat ctttgtatag
    13741 cttcttttgc tgaacgactc acgcttccat aagcaatgat taaaaattca gcatcatcaa
    13801 gcatatactc ttcataagta caaatatctt cttgattgtt ttttatttta cctatgagtc
    13861 tttccatatt ttttttcact ataactccat cttcagttgg aaaacctata tctccatgat
    13921 gaagtcctgt aacatgataa cgataacctg taaagaaagg atttaaagtt gcaggctcat
    13981 tttctcctgc tgcataaggt ttataatcct ttttatcgcc ttcaaatttt ttacggttat
    14041 atactttaat atcttttaaa tcaggtaaaa ccgctttacc attcatgtgc cctacagttt
    14101 catccataag taaaaatact ggagtcatat atttttcagc taaattaaac gctctaatgg
    14161 tttctgtata agcttcttca agacttgcag gagcaatagc aatacttgca aaatccccat
    14221 gagttggtgc tttagcttga aacaaatctc cttgtgctac acgagttgga agacctgttg
    14281 aaggaccacc tctcataaca tttacaatca caagtggaat ttcagcaata aatgcaagtc
    14341 ctatttgctc tgcttttaaa gaaattcctg gaccgctact tgcagtcatg gattttactc
    14401 cactcattgc cgcaccaata gccacgctaa tacctgaaat ttcatcttcc atttgtataa
    14461 aagttccatc atttgcagga agcatatggc ttaattcatg agctatctca ctactaggag
    14521 taataggata acctccaaaa aatttacatc cacaatcaat cgcagctttg gcgattaaaa
    14581 cattacctgt tgctataact tctctcatta tttttcctat gctaattttt tgtatttgtt
    14641 attttttacg gctacagctc tatctttagc ctcagcagta agtttggcaa atttaaattc
    14701 atctcttttt gccaccataa tagcaaaatc agggcaatgt gtctcacact cggtacagcc
    14761 tatacaggat tcagggtgta ccacctctat catttgtcct aaaaccgcat gcacatcatc
    14821 gcgcatagct aaaaccccag cggggcaata gctaacacaa atattgcatg ctttacatct
    14881 atgctcatct acccaaacag gggtatcttt tggagctgtc atactcatgt tttttccttt
    14941 attaacctaa tattttttga atttcttcac caattaaagc cggagaatcc accacatgaa
    15001 ttccatagct ttttaaagct tcttttttag ctgcagcgct ttcatcagca cttcctacta
    15061 tggcacctgc atgccccatt cttttgcctt taggagcagt tgcacctgca atgaatgcta
    15121 ccacaggttt gctaatattt tctttaataa atttagccgc ttccacttcc aaactaccac
    15181 caatttcacc tatcattaca atagctttag tttcatcatc tttttggaat tcacttaaaa
    15241 gttctttata agcaagacct atgataggat caccaccaat tcctactgca gtagaaattc
    15301 cataaccacc ttgaactacc tgattagcag cttcataagt taaagttcca ctttttgaaa
    15361 taagccccac gcaacctttt ttaaaaataa aacctggcat aatacctaat ttgcattctt
    15421 cagaagtgat aatacctgga caatttggtc caatgatttt catacccttt ttattggcat
    15481 attgcttagc aaacatcata tcttttacag gcgtatgttc tgtgattaca actgcaagct
    15541 taatacccgc atcagctgct tcaatcacgc tatcacccac agcaaaagca gggacaaaga
    15601 tcaagctcac atcagccttt gttgctttaa ccgcatctgc aacggtatca aaaactggtt
    15661 tacctaaatg agtttgtcca cctttatgag gggtgacacc tccaactata tttgtaccat
    15721 aagccatgca ttgctcagcg tgaaaagttg cttctttacc cgtaaaacct tgaactatta
    15781 cttttgtatt tttattaacc aatatactca ttttctatcc ttatcctact aaacttttta
    15841 caagctctgc accgttttta agattggttg ctgctttgat atttttaaga tttgaattat
    15901 ctaaaattgt ctttgcttct gctgcgttag tgccatcaag acgcactaca attggaatat
    15961 ttacctcaac attcttagta gcttctaaaa ttccatttgc tatcctatca caacgaacaa
    16021 taccaccaaa gatattgata aatataactt ttacattctt atctcttaaa atgatttcaa
    16081 aagcctttgc aacagtttct ggagaagctc ccccacctac atctaagaaa tttgcaggtt
    16141 ttgcaccact ataattaata atatccatag ttgccattgc tagacccgca ccattcacca
    16201 tgcaagctac atctccatct aatttcacat agcttaagcc aaattcagcc gcttctcttt
    16261 cagcaggatt ttcttcagta atatctctaa gttcagcaat ttcaggatga cgataaagcg
    16321 cactatcatc aaaactgcat tttgcatcaa gggcataaaa atccccttct gtagttttaa
    16381 ttaaaggatt gatttcaagc atattcatat ctttatccat gtaaagctta taaagtttag
    16441 ctatcataga aatgagtttt ttgccttcat ctttatcaag tcctaaaact ctcgctactt
    16501 caagtccatg aaacatttta aaaccaattt gtggatcaat gcctactttt gcaatttttt
    16561 caggactttc tttggctact ttttctatat ccatccctcc ttcacttgaa gcgataatgg
    16621 taatttgctc tgccattcta ttaaacaaaa tagccaaata atactctttt actatattag
    16681 cgccactttc tatataaagt ttttgcacga gcttaccttc aggtcctgtt tgatgagtta
    16741 ctaaattcat tcctaaaatt ttacttgcgt aatcttttac ctcatctaaa ttcttagcga
    16801 ttttaacacc accaccaaga ccacggcctc ctgcgtgaat ttgagcttta actgcccaaa
    16861 cactaccgcc taattcttta gcattagcca cagcttcatc tacgctaaat gcaacttttc
    16921 cctttaaggt agggatacca ttgtctgcaa aaattgcttt tgcttgatac tcatgtatgt
    16981 tcatttattc tcctttatat tgatatttga ttaaagattt ttctaatttg tctttttctt
    17041 gcaaactaag atccattttc atgatttcaa tcacaccttc aagtcctaat cttgccataa
    17101 ctcccaaggc tttgttttgc actccaaatt ctccatgtaa aatcacactc ataggtaaaa
    17161 actcgccact tcttatagac tcaagcattc ttatacaagc actagcaggg gctaaataag
    17221 ctgaagtttt aagatgtttg attactttag ctccacctgt tttaacttca ttttccaaat
    17281 catcaaattc ttcttcattt aaaaattcgc ttatattttt atttttaaca cttgcgtaag
    17341 attttaccaa aaccatatca tcattatgaa aaccaataag tcttgtatcc acgcttgaca
    17401 ttttgacatt aagttttttg gcaagctcat acttaaatct tgcattgtct aaaactcccg
    17461 ccatggctat aattttcttt gatgaaaaaa tcccgctttc ataaagagta ttaagtagaa
    17521 aatctacagg attagttaaa ataataaaaa gcggatcttc tgtaaaatct ttaatttttt
    17581 tagcacaatc aagcataatg cttgtattta actgaagcaa ttcttctcta ctttgcccat
    17641 cttttctagc aaaacctgca ctaaaaagca ctatatctga atttttggta tgagtataat
    17701 ctttagtgca aagtaaatct atatttaaat ttaaagcagc tatactttga gtaagttcta
    17761 gttcttttgc ataaagcaaa tcctcattga tatctactaa aacaatttca tttgctattt
    17821 ctcttaaaat caaagcataa gctacgcttg aacctacatt gccagcccct ataacagtga
    17881 ttttcatctt tgtcctattt tttctaaaat agcgttaaaa gttgcacttg gacgcatgat
    17941 tttatttgct ttttcatcat caaatttata atacccaccc aaatccactt tcacaccttg
    18001 tgcatcgtta aattcggctc tgattttttc ttcattagaa gaaagctcta gggcaatatc
    18061 tttaaaaaag ctttgaagct ccatatcact tgcctgtctt gctaaatgat ttgcaaaata
    18121 cattgctaaa taaaaatgac ttgttctatt atcatcttct ttaacttttc ttgatggagc
    18181 tttattattt tcaagccatt cgcctatagc ctcatcaaga cattctgcta aaaccttagc
    18241 tttatgattg ctacatttat ttgcataaaa ttccaaactt gcttgcaaag ccaaaaattc
    18301 acccaaacta tcccaacgca gatgattttc ttcgactaat tgttctactt gtttaggtgc
    18361 tgaaccccct gctcctgttt caaacatagc tccacccttt aacataggca caacagaaag
    18421 catttttgca cttgttccaa gctctaaaat aggaaaaaga tcggttaaat aatcccttaa
    18481 aacattaccc gtgatagaaa taacatcttt accttctcgg attaactcta aacttcttaa
    18541 acaagcttct tttggagtta aaatggctat atttttaccc ttttctttta aacgattttg
    18601 taccaaagtt atcatgattt tattactagc tcttttgcta tctaaccaaa aaatagcttc
    18661 ggctccacta agttctgatc tttctatacc taaatcaatc caatttaaca ctgcatcaaa
    18721 tttagcctga ttagctctat aaatatcacc ttttctaacc ttatgttcta ataaaacttt
    18781 accgttagaa actattttaa aagttccttc ttctttagcc acaaaggttt tatcgtgcga
    18841 tccatattct tgagcttttt tagccattaa acctacatta gatacactgc caagttttga
    18901 aggatttaaa gtaccatttt tatgcaaatc ttcaataacc gcctcataaa tagttgcgta
    18961 agtttgatca ggaattacgg catttgtgtc cttttcctta ccttccttat cccacaatct
    19021 tgcgccattt ttaagcattg caggcataga agcatcaacg ataacatcgc ttggaacatg
    19081 aagatttgta atgcctttat ctgaatttac catagaaata tctgcagatt tagctaaaat
    19141 ttcattgtat ttttttaaaa tttcatcttt tttgcttgaa ttttcgatct tacttaaaag
    19201 ctcacttaaa ccattatttg gattaatgcc taatttttca aattcatctt gaaattcgat
    19261 aaataattct ttaaaaaata cttttaccgc ataaccaaaa agtataggat cacttacttt
    19321 catcattgta gcttttaaat gcaaagaaaa aagcacatca tcatctttgc ttgctttaat
    19381 ttcttttgca taaaattcct gaagtttttg cacatccata aaagtagcgt ctaaaatttc
    19441 atttttttca agttttaagc cctcttttaa aatttctttt ttaccatcaa cgcttgtaaa
    19501 ttctatatta gccacacaat cttgatcgat taaaaccgct ttttcattag agaaaaaatc
    19561 cccttctttc atgtaagaaa cacgagtttt tgagtttgga ttaaactcaa ccacacgata
    19621 aggattgttt tttgcataat cttttaccgc ttttgttgaa cgacgatctg aatttccttg
    19681 tcttaataca ggattaaccg ctgaacctaa aactttttga tattttgttt taatttgcaa
    19741 ttcttcatca ttttttggct catctgggta atttggtaac atgtaaccct tatcttgcaa
    19801 ttctttaatc gccgccttaa gctgaggaat agaagctgaa atatttgggg ttttaataag
    19861 atttgcatcc gatcttttga caagctcacc taaaagttct aaagcatctt cacatctttg
    19921 ctcctctttt aaatactcac taaaagcagc taaaatcctt ccagataaag aaatatccga
    19981 ggtttttact cctatatgtg ccctacttaa aaaagctttc actataggca aaaacgaata
    20041 agtcgcaaga gctggcgact catctgttaa ggtataagta atttgcattt ttagtccttt
    20101 aaaatactta tttttatttt catttttaag tatattacaa ataaaaaaaa atgcaagagt
    20161 aagtttaaag tttgttttag ttttcaaaca aactttaaat atttttaatt aagtaaatta
    20221 gcaggaagtt gtatgatatt tttaataaga ttaaaagggg tttttagggt atctgttaaa
    20281 atttcggtat gaaatttagg gtcatctata cttccatcta tttttaagtt tgtgctaatt
    20341 tcttgatttt tacctaaaat tacataattt aaaattggaa ccttggatat agcttctgaa
    20401 gctgatttta aagttttaag ctctaagcta aaatccactg tatttaatct taaatttgct
    20461 gatcctaaac catatatatc tacactatcg ccatttaaat taatagccaa aacacttaaa
    20521 agatcttttt ttctattaaa aataatcttt ccatcataca agcttaaacc tttttgatta
    20581 aaagttggag atttaaacat caataaactt ggtacagtat caataaagga aataagctga
    20641 tttacacctt ttaaatcctt cacataagtg tttttaaaat cgatctgtcc atcaaaatac
    20701 tccaatccac ttccttttat acttaagtta aacactccat cttgaacagc ttgtttttgt
    20761 aaaaactcat ttaaataatt atcatcaata ttgctaacgt ttaaatttac atcattagaa
    20821 gaataataaa gttcaaattt tgcatttcct ctagaacctt taagatccaa agcattgcct
    20881 tttaaatcag cctctaccct atcaaaagcc aaagttttat tagaatctgg caaaattaaa
    20941 gctacatttg ctccaccaaa actaatattt tgggtattag tagaaatatc aaatgttgaa
    21001 tttgaagagt tggaaccttt tctataaata taacttaaat tttttaaatg aatttcttta
    21061 ttattagaac ttattttagc acttgctgta tcactttgag tatgaatttc cataatgccc
    21121 ttatttttta caatatcaaa gctatcattt tcataaggag tttgaccgtt aataagtaaa
    21181 ttatttttaa aataagcatc attaacgctt gcattaaaat cttcaaaatt taaagtttta
    21241 taataaacat ttttagcatc gataaaccca aactttttaa gcaatggaga aaatgaaaat
    21301 aaaatcttag gattactaag attagcctca agtccatctt taaaatttaa aatcaaattc
    21361 cactgaggaa tgctaatgtt aacattttgc gaataatcta attttacttc tacattttga
    21421 ttttttaaat ctaaaagctc tccattgtca aaataaagcc ttgaaatctg agtattgaaa
    21481 tttccttgct gtttttgtaa gtcaaattta gcattaaaat cagcttctaa aaagccattt
    21541 ttaacactgg cattttctat atttaaatca ttttgattta attttacaaa tgcttttgta
    21601 atattaaaat cagccaaaga aatactagca ttctctaaag ctaaaatacc actataagaa
    21661 atttcaccct tatcatgaaa atcaatttta agctccaaat cacttttaat ttttccgctt
    21721 ttttgataaa aaggtagtga aaaatgataa tcctctaaag ctttagcaag tttttcgtca
    21781 aattttagat tatcagactt aatgcgcaaa taaatcccaa cttttttttc atcaaacaaa
    21841 tcatatagat aaaccttact agaacttaaa tcagcaccat tatagaaagc tttattaaag
    21901 acaaaatcga gcttttgttt gtttaaattt aaatcgagtt ttggaatttc aatagcattc
    21961 attttatcat ccaagcgaac tttgacatta ttaacataac ctgatgcact aatattgtct
    22021 aaataataat tatctttagt aaaatctata aagccctgca aataatctaa atgataaaat
    22081 tctcccttag ccctatatgc tacccaaaga tttaaactct gcggaagttc ta
//
LOCUS       DARGEX010000013        21993 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.013, whole genome shotgun sequence.
ACCESSION   DARGEX010000013 DARGEX010000000
VERSION     DARGEX010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.013"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..886
                     /locus_tag="SF010_000419"
     CDS             <1..886
                     /locus_tag="SF010_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG8229382.1"
                     /translation="KASIYRGNKLISSNEKTFDKSENLLEYIKNLSKHFLFYHTALFL
                     DAKEQGLIPSTNIQDCEHFNIGKISLQHILFNNALVYTATEHVEYYSELFEEYRGLDF
                     LYSPFALLYYNIQKEKQPDDQILLYGFKQGHLLAIIVAKGNTILYGDFKIFEQELGLE
                     LELPSEDNQEIENNNNDTEVTLDNFNEALNNKFDLLDQENNLETLNNNDNFNLDELNQ
                     FSNDMELCRYIITSIEKFYNDDKYAGVFINGILLYSESDINISAIDFLESETFLEIKT
                     KQINTLDLMIELMQKELK"
     gene            883..1410
                     /locus_tag="SF010_000420"
     CDS             883..1410
                     /locus_tag="SF010_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229383.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            1400..1918
                     /locus_tag="SF010_000421"
     CDS             1400..1918
                     /locus_tag="SF010_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229384.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(1910..3202)
                     /gene="thiC"
                     /locus_tag="SF010_000422"
     CDS             complement(1910..3202)
                     /gene="thiC"
                     /locus_tag="SF010_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG8229385.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(3259..3363)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(3384..4145)
                     /locus_tag="SF010_000423"
     CDS             complement(3384..4145)
                     /locus_tag="SF010_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8229386.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     gene            complement(4142..4789)
                     /gene="rpe"
                     /locus_tag="SF010_000424"
     CDS             complement(4142..4789)
                     /gene="rpe"
                     /locus_tag="SF010_000424"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG8229387.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            4929..5123
                     /locus_tag="SF010_000425"
     CDS             4929..5123
                     /locus_tag="SF010_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG8229388.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            5308..5523
                     /locus_tag="SF010_000426"
     CDS             5308..5523
                     /locus_tag="SF010_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG8229389.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            5533..6630
                     /locus_tag="SF010_000427"
     CDS             5533..6630
                     /locus_tag="SF010_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG8229390.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(6662..7258)
                     /locus_tag="SF010_000428"
     CDS             complement(6662..7258)
                     /locus_tag="SF010_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG8229391.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(7341..9405)
                     /locus_tag="SF010_000429"
                     /pseudo
     CDS             complement(7341..9405)
                     /locus_tag="SF010_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(9548..10486)
                     /locus_tag="SF010_000430"
     CDS             complement(9548..10486)
                     /locus_tag="SF010_000430"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEG8229392.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEATAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(10488..11702)
                     /locus_tag="SF010_000431"
     CDS             complement(10488..11702)
                     /locus_tag="SF010_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG8229393.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAIQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVVGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(11729..11962)
                     /gene="acpP"
                     /locus_tag="SF010_000432"
     CDS             complement(11729..11962)
                     /gene="acpP"
                     /locus_tag="SF010_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8229394.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            12072..12740
                     /gene="tenA"
                     /locus_tag="SF010_000433"
     CDS             12072..12740
                     /gene="tenA"
                     /locus_tag="SF010_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG8229395.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(12764..13621)
                     /locus_tag="SF010_000434"
     CDS             complement(12764..13621)
                     /locus_tag="SF010_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG8229396.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(13625..14590)
                     /locus_tag="SF010_000435"
     CDS             complement(13625..14590)
                     /locus_tag="SF010_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG8229397.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(14587..16422)
                     /locus_tag="SF010_000436"
     CDS             complement(14587..16422)
                     /locus_tag="SF010_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8229398.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLIIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGVKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            complement(16760..17170)
                     /locus_tag="SF010_000437"
     CDS             complement(16760..17170)
                     /locus_tag="SF010_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG8229399.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(17177..17920)
                     /gene="fabG"
                     /locus_tag="SF010_000438"
     CDS             complement(17177..17920)
                     /gene="fabG"
                     /locus_tag="SF010_000438"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG8229400.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(17992..19470)
                     /locus_tag="SF010_000439"
     CDS             complement(17992..19470)
                     /locus_tag="SF010_000439"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG8229401.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKIKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            19550..20611
                     /locus_tag="SF010_000440"
     CDS             19550..20611
                     /locus_tag="SF010_000440"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG8229402.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKNNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALIGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            20611..21819
                     /locus_tag="SF010_000441"
     CDS             20611..21819
                     /locus_tag="SF010_000441"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG8229403.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         7544 a         4111 c         2861 g         7477 t
ORIGIN      
        1 aaaagcttct atttatagag gaaataaact aatcagtagc aatgaaaaaa cttttgataa
       61 aagcgaaaat ttactagaat acataaaaaa tttaagcaag catttcttat tttaccacac
      121 tgctttattt ttagatgcca aagaacaagg attaatacct agtacaaata ttcaagattg
      181 tgagcacttt aatataggaa aaatcagctt acagcatatt ttgtttaata atgcccttgt
      241 ttatacggct accgaacatg tggaatatta tagcgagctt tttgaagaat atagaggttt
      301 agatttttta tattcccctt ttgctcttct ttactacaat atacaaaaag aaaaacagcc
      361 tgatgatcaa attttacttt atggatttaa gcaaggacat cttttggcaa ttattgttgc
      421 taaaggcaat actattttat acggtgattt taaaatattt gagcaagaat taggtttaga
      481 gcttgaactt ccatcagaag ataatcaaga aattgaaaac aacaacaatg atactgaagt
      541 taccctagat aacttcaatg aagccttaaa taataaattt gatctacttg atcaagaaaa
      601 taatcttgaa actttgaata ataatgataa ttttaatctt gatgaattaa atcaatttag
      661 caatgatatg gaactatgcc gttatattat tacgagcatt gaaaaatttt ataatgatga
      721 taaatatgct ggggtattta tcaatggtat tttattatat agtgaatcag atattaacat
      781 aagtgctatt gattttttag aaagtgaaac ttttttagag ataaaaacga aacaaatcaa
      841 caccttagat cttatgatag aattgatgca aaaggagctt aaatgactta tagcttcata
      901 cagccaagaa aaaaacctat tttcacactc tttgataaaa tttggctagg actttttggt
      961 tttagtatat tatttatctt gctagtatat tttacatata caataaaaat tgcattaatc
     1021 aatagctcta tcgataatga aaaacaacaa gttatagtgc ttcaaaatca aactaagcaa
     1081 aatgaaatgc tttatgaaat tttatttgat caaagccaaa tagcgaaaaa ttttaacact
     1141 caaaatcaaa ttgttaaaga aagcttaaga aatctatttg atattattgt aaaaactgat
     1201 aatattactc ttgaaagtgt tgaacaagac gaatattcct taaaacttat cggagtcact
     1261 cctacaagag aaatgtttac tctactttta gaaacccctt taaaaagcat ctttgatcaa
     1321 agctatacaa cctattatcg cttagataat gggtggtatc gttttgttag tattagtaaa
     1381 caaattccag gagttgcaga tgaaagataa aagtctagaa gaaattgatt tattaaagct
     1441 tatcatttgc gcgttaagtt ttataagcgt ttgcacagcc ttgatcttat ttttactttt
     1501 accgacatta aaaaattata aacaagcaaa tcttagagaa aactcacaac ttgctatctt
     1561 aaaagccgct aaattaaaat ttgactttag tgaagataaa atatcaactc taagaagcga
     1621 aaacaacaaa agtttagagc aatttgagca aaattttaat ataggaaatt ttgatatttt
     1681 tttacaaaaa tattttcaaa atgtaaaaat tcaagaaact aagcccgaaa aacaagaaaa
     1741 atatctaaaa aaccgcttag ccattaaagc gacaatgaac aatcctagaa ggctttatga
     1801 ttttattgat gctctaaaaa actataataa cttaatcaag cttgattatc cacttaatct
     1861 taaagcagga gagcaaggta tctctataga tcttactctc aaagtttatt caagctaaac
     1921 tcacatcttc gccttttaaa atttgattca tagtattcat tgcacacatt tttccacaca
     1981 tagaacatga gtttaaatca tcaggacgac gctcattaaa catttttttg gccttttctc
     2041 catcaatagc aagtttaaac attttctccc aatctatctc ttgcctagcc ttactcatct
     2101 catcatctct tgctctttct tttggaagtt tagctatatc tcctgcatga gctgcaattt
     2161 tagtcgcaac tataccctct ctaacatctt ctaaatttgg aagtcttaag tgttcagcag
     2221 gtgttacata acacagcata tcagcaccgc tagctgcagc cacagctcct ccaatagcac
     2281 cactaatatg atcataccct gcgccaatat ctattaccaa aggtcctaag acataaaaag
     2341 gcgctccttt acataaacgc ttttctaatt gcatatttgc ctctatttca ttaatagcca
     2401 tatgccctgg accttctatc attacttgaa tcccaacatc ccaagccctt tgagtaagga
     2461 gtgataattc tataagttct gaaatttgtg ccccatcact tgcatcgtga gtagagccag
     2521 gacgcaaagc atcgcccaaa gataaagtta catcgtattt taaacaaatg tcaagcaaat
     2581 catcataata ctcaaaaaaa ggattttcag catctttcat catcatccaa gcataaagta
     2641 cagagcctcc tcttgaaact atatttgtaa gtcttttact ttgtttaaaa atatgcgctg
     2701 cgcgagaatt aatacctgca tgaattgtca taaaatcaac cccactttta gcatgatgat
     2761 atacaacatc taaaaagtct ttggcattaa tttgctttaa atctttttct aaaaatccta
     2821 ccgcatcata tacaggaact gttcctatca tagcttttga aacattaaca agctcgtctc
     2881 taaaacgact tgttttgcca taattgctta agtccataat cgcttctata tcaaatttat
     2941 gagcaagctc tacttttttc atttcctcgc tataatcaac acaatcattt gaaactccta
     3001 aatttacatt aaccttagta cgcagtccaa aacctatacc atttggatca agacttttat
     3061 gattaatatt tgcagggata ataattttac cgcaagcaat attttcaagc aaaaaatctt
     3121 tacttaaatt ttctttttgt gcaacaatct gcatttcttt agtaaaaata ccttctttcg
     3181 cataattcat ttgagttttc ataaatttat cctttaaaaa atttggataa atgaagggtg
     3241 agtataaatt tttaaagtat tgaaatttat aaatcttccc gacgctggca ttatccagat
     3301 ccggttcggt ctaagctttt agcttactct cagcctgtta cacaagctcc cgtcatttat
     3361 gttttattat acactttaaa tatttatttt tgctttatac gtgcagtttt tgtaaaattt
     3421 ataagttctt ctgtagtttt tatatgataa ggaagttttc caaggcaata tttaaaaatt
     3481 tcagcagctg ccaaagcatc atctaaggct ctatgatgca tattttccac gccaagaaat
     3541 tctttcaaaa cctctagttt atattttgga ctttctatac aacattgtgc aaattctata
     3601 gtgcaaatac gacgattaag caaaatgcca aaaccacact catttaaagc cttagaaata
     3661 aaactataat caaaacgcac attatgcgct acaaaaatac tgtcttttaa aaaaagccta
     3721 aaatcactta aaacctttgc taaacttgga gcattttcca ccatctcata agtaataccc
     3781 gtaagttcag ttatattttt tggaatttct tttactttaa caaaactttg aaagcgtcca
     3841 atttctttag aattttgaat ttttaccgct ccaatttcta aaatttcccc cttgctcacc
     3901 ccaccagtac tttctatatc cactatgcaa aaaatttcat ctttaatttt tgttgtgcgt
     3961 gttttaagag taaaaatatt atctttattt aaagttaaac ctaaccccaa aagctcaaaa
     4021 gtttctaaat ctaaatcaaa attttttaat tcttcaactt tggcaaactc ttgcatcacc
     4081 caatcataag gcttgctttg cttatttaat atagaaataa tctgatcaat ttgctgtaaa
     4141 ctcaaaattc aagctttaaa gatgaaattg cagttttata atcattggaa gaaaaaatat
     4201 aacttccagc caccaaaata tcagctccag attcttctaa atcactagca tttaaaccat
     4261 taacaccacc atcaacctct ataaaaactt tagcattttt tttatcaatc atttggcgca
     4321 attctttgat tttttcatgt atcaaaggta aaaatttttg cccaccaaat ccaggattaa
     4381 cactcattaa aagcaccata tctacaaatt ctagcatgtg tttaatagaa tcaataggag
     4441 tatgtggatt taaaacaata gcaggatgga ttccttgact tcttatatat tcacaaagcc
     4501 ttataggatg aacttcgctt tccatatgaa aagagataaa tttcggtttt aaagagataa
     4561 aaagatctac aaatttactt acatctttaa ccattaaatg cacatctaat ggcaacttac
     4621 taatagttga aatcttttcg atcacgcaag gtccgaaagt caaatttgga acaaagtgtc
     4681 catccattac atcaatgtgt aaaagatccg cacctgcagc ttcaatagct ttaacttctt
     4741 cttctaattt caaaaaattt gcagacaata aacttggagc tacatacatg atcaaaacct
     4801 taaactatat ataaatgtga taaataatat tttatcgact tatatattaa aaaaactata
     4861 aattatggaa tattttaagc ttaattttga taaaatctcc atttaaaaat tttcataagg
     4921 acaaaaaaat ggcaagagta tgtcaaatca caggcaaggg tccaatggtg ggtaataatg
     4981 tcagccatgc taacaataaa acaaaaagac gctttttacc taatctcaga acagttcgtg
     5041 taactttaga agatggcacc acgagaaaaa tgagaattgc agcttctact ctaagaactc
     5101 taaaaaaaca aaattctaaa taattttgag gatttattcc tcaattttaa aatttccaat
     5161 ttaaaaataa actttaacaa atcacttata taacacacat ttaaaaatta ttattaattt
     5221 tattattttt taagctaaaa atatctttta atagtgtaaa ataccttgtt aaatgaattt
     5281 taaatttcac taatacaagg agagtttatg ctacatgaat atagagaatt aatgtcagag
     5341 ctaaaaggta aagatgctca ttttgataaa ctatttgatc gtcataatga acttgatgac
     5401 atgattaaag atgcagaaga aggtagaact tctcttagca gcatggaaat ttcaacttta
     5461 aaaaaagaaa agcttcatgt aaaagatgaa cttagccaat atctagcaaa ttataaaaaa
     5521 taaggcaaaa caatgtttgg aagtaaaata aaccattctg atcttcaaaa acttgaagaa
     5581 gaaaataaaa atcttacaca taaaattgaa aaatttcaat cggaaaattt agaattaaaa
     5641 aataaaatta catcattaga acaagcggct ttagagtcta aacttaaaac agatctttta
     5701 aatgttttat taactggggt tttaaaaaat attactatta ttcaaggcga tatgttagaa
     5761 aatgtaaata aggcagaagt tatctctagc tattctaaaa cttctcttgc tgaaatggat
     5821 gaacttaacc atattgctaa ttctatcaat gcctctttgg gaaatattac agaatcagcc
     5881 aataaaacaa gagatgttgc aggaacattg catagaagtg tagatgaaat tactaatgta
     5941 attaatctaa ttaaagatgt ttccgatcaa accaatcttt tagctcttaa cgctgccata
     6001 gaagctgcac gcgcaggtga acatgggcgt ggttttgctg ttgttgccga tgaagtaaga
     6061 aaactagctg aaaaaacaca aaaagcaacc acagaagttg aaatgaatat caaccttcta
     6121 aagcaaaatg caaatgaaat gtatactcaa agtgagcaag ttgaaaaaat ttctatagat
     6181 tctaatgctc atattatgag tttttccgaa aaatttactc acttagtaaa tgaagcgcat
     6241 tctactaatt caaatgcagt tggtatcgct tcagaagctt tcgtatcttt agcaaaacta
     6301 gatcatatag cttttaaatt aaatggttat aaagaaattt tttccaaatc aggaaagcaa
     6361 ttagccgatc atacatcttg tcgcttagga aaatggcttg ctagcacagg aaaagaaaga
     6421 tttgggcaaa ataaaagctt cttaaaaatt aacgagccac atgaaaaagt tcatgaaaat
     6481 atgaataatg ctataacaat agcaaataca gaagatatta gcaaagatat tactcaacac
     6541 agcataatta ataaatgcga agttgctgaa aatgcatcgc ttgatctttt caatgtattt
     6601 aaagaaatgc ttgatgagtc agatcattaa aatcctaggt tgaacctttt taaggtttaa
     6661 cctaaataat ctttaatttt ccccactttt cctttaaaaa ccacatataa gcaaaatcaa
     6721 gcaaaggcgt tcttatcata tttttacatt ttttttcaaa atcctgcacc ttaacataaa
     6781 cagcttcaat ctcttcatca tcaactccac ctccagaaga aattttatct ttttcatcaa
     6841 cttctacgaa ataaaagctt tgcttgctta cacctgaacc aaaccctgta taaaaatctc
     6901 ctattttttc taaattttta ggagcatatc ctagttcttc tatacattct tcttttgcta
     6961 tttcctctaa agataatttt ttatccacaa gcccagaaca aagctctata gtatagccca
     7021 tatcatcatc ttttacataa tctttatcat gcatttgatg ataccaaagt ggtatacgaa
     7081 attggcgtac aaaaataaaa ctttctaatt ctttatgata caaaagcact gaaacactat
     7141 ctttagattc tataaaatcc caagtgcaaa gcctaccatt actttcataa gcaaatctct
     7201 taggcttaat ataatttgat ttttcaaaag aaagttcttt taaattttta aacgccataa
     7261 taaaaccttt tatttatttt tcacattgta ctttattttt gcttttttga aaatataaag
     7321 gtgattaaag ccttaaaaaa ttaaaaatca tatttataac ttaaccaaaa acttcttcct
     7381 tctatataat cttgatagcg atttgcatat ccagcaggat tagccccatc ccatcttgta
     7441 acttgcggat caaagaaatt tttatcaaaa agattttgca ctgcaaaact taagctagat
     7501 tgcttattga ttttataatt tatccctaaa tctactatat aaaaaggctt atatttttgc
     7561 catggcagac taccattacc gccacctttt gctttagcta tagtatcaag tcttgctcgt
     7621 gtttttatat aggaactaaa tttacctcgc tcatagttta attttaacat tgctatatgt
     7681 cttggtaaat tttctattct atcaccacca aaccaatttt tttgaccatc tttgtagcga
     7741 ttatccataa aagtataact tgaatttagg ctaaagccat tgtaagtttt ggtattaaat
     7801 gcaaattcta tacctttagt ctgcgttttt ccaagattaa taggacgctt acaaacaatg
     7861 ccattgctac aattaatatc attttgcata cctgttaaat cttcactact gatttgattt
     7921 gtaaaatcag taataaatcc tgtaatagaa taatgtgcaa aatcaaatac cataaaatca
     7981 acacccaatt cataatttat actttcttct ggttttaagt cagggtttcc aaaataagca
     8041 ttattattgg cataattata atatccattt gtcaactgct tggcagcagg agttttatag
     8101 ccttttgaaa cacctccttt caaggctata ttatcattta agtgataaac caaataaacc
     8161 ctaggcgtaa attcagaatc aaacaaatcg ctataaatat aacgcaaacc tgtagtaaaa
     8221 atcaaatcat cggttataaa atactcattt tccccataaa gcgcaaccgt ggtttgatca
     8281 agatttttac ctcttatttg actacctgcg cttgcttgat cattttttaa tatctcataa
     8341 tcaatccttg caccaaaggt atttactaaa ttaccgtatt gacctaaatt ccaaggtaaa
     8401 acaaccttac cttctcctac ccaaatttgg ctatgcagct ccttatcctt agtgctacca
     8461 tattgtaaat atgagttagt tgaaccaaaa tcatagttac catcatgatt caaaacaata
     8521 ttatccttaa aaagttgtct ttcactttta atagccctac tacttgtaga attcactgaa
     8581 atttcattaa tatatcgttc tatatcaaaa tatatattat ttttatcatc tactgtccaa
     8641 ttaagcctag aaccaaaacc caagctagta aaagcacctt gggctatgac tagcaatttg
     8701 ataattatca ggtctttgat tgttattatt ccaaaccggt gtaggccatt ttaaatcaga
     8761 agctgcctta tcataatact tcaaccttgc agaaattgat aatgtatctt caatcaaagg
     8821 agttgctaca taagcattaa atcccccagc attaccatag tgattagagt gctgttgtaa
     8881 aagagtatta aattctatat ttgcttcgat tttatcagga tttttcttag tgataatatt
     8941 tatcacaccg cctacagcat cactgccata aagtgtagaa gctggaccac gtataacctc
     9001 aatacgctct atcatagaca aaggtggcag atatcctgac tcactgccac taaaaccatt
     9061 atcataaaac ccatttgcaa cactttgacg ttttccatca attaaaacta gagtataaga
     9121 actaccaaaa cctcgtatgc taaaatcata agtgcctgtt ttattcatag tcacatctac
     9181 acctggaata tctcctatag cctctcctat atccttaatt ggcttttttt caagctcttc
     9241 ttttgtaatg atagaaatac tagcaggcgc atcaaccaaa tcttgttcaa aaccactagc
     9301 actaaccaca acatcattaa gttgatattt ttcttctgct tttaacaaag ctccagataa
     9361 aattaaaaaa cacagtaaac tttttttaaa ttttatattt ttgatttgag tcaaattaat
     9421 tcctttaaaa ataattattt tgatatttaa aatcattttt gaagtataaa aaaagaatac
     9481 ttttaattaa cttaattttg ataacaatta taaataataa aattatttaa aaaagcgaag
     9541 taaaagccta agcctcttga taggctccaa gctttaaaat tttctgcata cgatttgcag
     9601 aaagttctcg tacatcaata ttttcaagtt catttagaga tttttttaca taatcagcaa
     9661 tagctactgc tgtagcctct ttattgcgat gtgcaccatt tgtaggctca tctataacat
     9721 catcaattaa accttgagat tttaaatcat cagccgttac cttcatagcc ttggttgcag
     9781 cttcactttt tgcaggatca ttccaaagta ttgcagcaca accttcagga gaaattactg
     9841 aaaaaacaga atttttcatc attgcaagtt tatctgcaac ccctatagct aacgccccgc
     9901 cactaccgcc ttctccgata actatagcaa tggtcggtat tttcaaatca cttaattcat
     9961 ataaatttct agcgatagct tcactttgtc ctctttcttc agcacctatt ccaggataag
    10021 cacctggagt atctatcaaa aataaaatag gaatttgaaa tttctctgca agtcttgcta
    10081 ctcttaaggc tttgcgatat ccttcaggat gtggcatccc aaaatttcta gcgattttat
    10141 cttttgttcc acgtcctttt tgctcaccaa ttacaattat ttttttctct cctaaataac
    10201 ccataaaaca aacaatagca ggatcatctc taaaggcacg atcaccatgt atttcgtgag
    10261 cgtcatttaa aataagttca atatagtcaa gagcataagg gcgatctgga tgacgcgcta
    10321 attgcaaacg ctgaaaatca cttaaattct tataagtttt agaaatttct ttttcaagat
    10381 ttttctttaa aattgataca gcttcagtat ctcctttaat ctgagcattg ataatgtcct
    10441 cgtcaatttg ctgaatattt ttttcaaaat ctaaataaga agccatatta atctactttt
    10501 ttaaatacaa cacagccatt tgtgccacca aaaccaaaag aattactcat caccactttt
    10561 aaatctactt ttcttgatat atttggaata taatcaagat cacattcatc atcttttaca
    10621 agctgattga ttgtaggtgg aactacccca tctcttaaag ccataacact aacaactgct
    10681 tcaattgcac ctgcagcacc caagcaatga cctgtttgtc ctttggtgga acttataagc
    10741 gggatattat tgccaaaaag ctctttaatt gctgctgttt catttttgtc atttacaggg
    10801 gttgaagttc catgtgcatt gatataatct acctttggat tccctgccat atttaaagct
    10861 tttttcatag ctcttaaagg cccatctaaa gttggtgaag taatatgatg cgcatctgca
    10921 ctttctccaa atccaattaa ttcagcataa atcgtagcac cgcgtttttt agcctcttca
    10981 tattcctcaa aaactaaagc tccagcacct tctcccatga caaaaccatc tctttctttg
    11041 tcaaatggtc ttgaagcatg ctgtggatct tcatttctag ttgataaagc tttcattgaa
    11101 gcaaaaccac ctatacccac aggacaaatc gcagcttctg cacctacgac taacatcttt
    11161 ttagcatttc ccaaagctat acttttataa gcttctccta tagcatgagt tcctgctgca
    11221 caagctgtaa cacaagaaat atttggccct ttaagtccat gctctataga aatcaaacct
    11281 cctaacatat ttacaagtgc cgaaggtatg aaaaaagggg aaattttacg cggacctcgc
    11341 tcggaacaaa taatggaatt tttttctatg ttaggcaaac ctccaatacc agaagccgaa
    11401 acaatgccaa attcttcttt atctaattct tcactaaatc cagcatcctg tattgcttct
    11461 cttgctgctt taattccaag ttgtatgaaa cggtcaattt tttttacttc tttgccatca
    11521 acaacctcta atggatcaaa atttttaact tcagctgcaa tttgaacagg aaagtccgta
    11581 gcatcaaaaa gagtaatttt atttactccg ctttctccat tgcaaattgc tttaaatgaa
    11641 ctttctttat ctaaaccaag ggcattgatc ataccaatac ctgtaactac aactcttttc
    11701 aagaataagc tccttgcaag aaaaaaaatt atttttttag attgtcaata taatttacaa
    11761 catcttcaat tttaattaat ttttcagcat cactatctgg aatttctact tcaaattttt
    11821 cttctaaagc cataataagc tctacaacat ctaaagaatc agcacctaaa tcttcaataa
    11881 tttttgattc cattttaact gcatctgcat caatacttaa ttgctctact actactgctt
    11941 ttacatcatc aaatgttgcc atttgttctc cttcaaaaaa ttaaaataaa gcgtatttta
    12001 ctataaaaag cttaaaatat ttatagtttt tcattatact tgaaaataaa atattaaaac
    12061 ataaaggaaa aatgatgctt ttctctaatt taatcaaaga aaatcaaaaa atttggaatg
    12121 cttatctaca tcatgatttt gttaaaaaat tggaagataa aagcctaaag caagaaaatt
    12181 ttctttttta tctcaagcaa gattatattt atttgcttaa ttacgcaaaa tgttatgcaa
    12241 gattagcact taactcaaat actgcaaaag aacttcgttt tgctatgaaa tttcaaaatt
    12301 atatagttga aggagaaatg gaacttcatc gtgcaatttt atctcttggc attaatgcag
    12361 atgaactcga tataaaagat gaaagtttag tcaatatagc ctattcgcgt tatatgttaa
    12421 gcgtaggtga aaatggagat tttttagata tgttagttgc tcttagtgct tgcgctatag
    12481 gctatgcaaa aataggtgct gaaattataa atcgtttaaa aaatgaaaat ttaaaagatc
    12541 atccttacaa ggaatggatt ttgacctatg gaagtgaaaa ttttcaaaat gaagctaaag
    12601 aatttgaaga ttttgttaat tcttatactt caagtgttgg tgcacaaaaa ttccaaaaac
    12661 tcagcgaaat ttttcatact gtaacacgct tagaagtggc tttttgggag cattctttaa
    12721 gaatggaatt aaatctttaa acatgggctt tttgcccatg tttttatgca attttacttg
    12781 catcaataat attataatct aaaccaacca tttctttaga aagtcctaat gcaagtccta
    12841 ctaattgtga taaatgaata ataggcaatc ttgctttaga attagtataa tcttgaaatc
    12901 tttcttgata gatatcaagc tgcatttgac aaagtggaca aggtgttaca acacaatcag
    12961 cttgattttc acttgcatta ttgacaattt gactagacat ttttttcaca gatttttctg
    13021 caggataaga agcatgaaaa ccacaacaat caaggcgttt ttcaaaagga actattttag
    13081 cccctaaaac ttctactaca ctttcaaaac tttttggatt ggttgaactt tcttttttac
    13141 cgaaagcatc ttcaggtctt aaactatggc aaccataaaa taaagctact tttaaatttg
    13201 aaagcggctt tttcaccttg ctttttaaat tatccaaatc ctcataaagc tcccacaaaa
    13261 gacttgtaat aggcgttgaa ccttgatatt tcattccacc ttgtgctaaa aaaatattga
    13321 tgcgttcttt tgcaccctta tcaagagtat tttttgcttt agttaaagtt agcatacaag
    13381 tactacaagt tgtaagcatt ggcattttca tctcttctgc taaagcaata tttcttgcat
    13441 tagctaccaa agtcgcaata ggatcaacac actgcgcttg agaagcccca caacaactcc
    13501 accccttgat ttcattcaac ttccaaccca aaataggtgc aatagcttca agtgaaattt
    13561 tagattcttt tgcagcttga gataaaacac aacctggaaa aaaagcgtat tctttttgca
    13621 tattttactc cttaacagca gcttcttgtg ccgcctttat cattttaacc aaatctttat
    13681 gaccttctat ttcatcctcg ccaaaaacat gcataggatt catttttcct gcacgcataa
    13741 gtttaaaagc tatatctgtt ttacccatag aacctataac accctcagaa cgcaaagcaa
    13801 gataaatttc attcaagcgt cctgaacctt caactaaatc tttataaaaa gcttcagcat
    13861 gatcaggccc taagccttca tttaaacctt ttttaatcgc catcactctt aaatttgcta
    13921 tatcacttac tgaacttata ccctttggac aacgatcagc gcactcttga caatgaacac
    13981 aaagccaaag tccattcatt acgctgggtt ttacatgcaa cataggatcc ttacctcgag
    14041 agtctgccgc tgcacgccaa gcatgagtaa aaacaaaagg ttgcatataa tcgctactat
    14101 ctgcttctaa tttattacac tctgaggcac agctaccaca taaaatacaa tcccattgct
    14161 tgctaatacg atcaaattct tcttgacttt gtttacagcc cttttccgct gaaaattcat
    14221 tttttgccac catggcagga cgaatttttc ttaaattttc tatagaaggc tcccaatcca
    14281 caattaaatc agaaattact ctaaaatttc caagcggaga aatgcgtata cttgaaggat
    14341 tatcatattc ttttaataaa tcttgcattt tagtatcaca agcaagataa gaatgcccat
    14401 tcacacgaac tgcacaagcc ccacaaattg cagattgaca agaggcggta aaatttaaag
    14461 taatatcttt tgtttttttg ataaaaagca aaagagagag cagagttttt ccttgtatat
    14521 ccttatcatc aatatcataa ctttgttcat atttttcctt gccattaaaa cgatctatga
    14581 taattttcat tgtactctcc ttccatcaag tgaaaactca gttaccacga catctttata
    14641 actaagtttt aattcatcat tttctaaatt tacaatgcta tgttttaaga aatttttatc
    14701 atctcgcttt ggataatctt ctctagtatg agccccacgg ctttcaagtc tatttctagc
    14761 tgctaaacaa gcacagcgag aaagtaaaat caaattacca agctctacat aatctgtaaa
    14821 agcagtattc atcacttcat taggatttgg aatacgaatt ttttcatatc tcgcttgtat
    14881 atcttctaat ttttttgcta gaagatcgag tttttcttga gttctaaaaa tccccatatt
    14941 atcccaattt tgacttccta gctcttctcg caattcatac atttcttgac catttccgcc
    15001 attatttgta atttctttaa atctaacctg ccatttttga gcaagttcat gagtttttac
    15061 cccttttcca aaacttgcat ctttagcata atttgtcgca ccaatgcctg ctaaatgccc
    15121 tgttacaact gcatcggcta aagaatttcc ccctagtcta ttagctccat gtatagaaat
    15181 gcaagaagct tctccaccta cataaattcc agcaatttta gtactcatat cttcaaattt
    15241 agccacttca attccaccca tagaataatg cgccgttgga cggataggta caggagtatc
    15301 tactaaatca atattttcaa aaagcattgc agtgtgacga atttttggta aatcttttaa
    15361 aattttttct tttcctaagt ggcgtacatc gcacaaaaca taagctccaa gtccctcgcc
    15421 ataacctcta ccttcacgaa tttctgtttc tatagcacgc gcaaccacat ctcgcggtgc
    15481 aagctccatt ttttcatggt aatttttcat aaaacgctca ccacgattat ttaaaagata
    15541 tcccccttca ccgcgcgccg cttctgtaat aagagttcca ccatttgcaa ctcctgttgg
    15601 gtgaaattgt atcatctcag gatcttcaaa accaagtcct gctctaagag cagctgccac
    15661 accatctcct gtggcaataa aaggagttga agttctatta taaaatatcc ttgtgtatcc
    15721 ccctgtagca atcaccaaag ctttgcataa cacaggataa attccaccgc tttgtatatc
    15781 tcttaaaacg acaccctcgc attttccatc cacaacacct atatccaaaa gttcatgatc
    15841 cattaaaaat ttcacaccac tactaatagc atcatctaaa caagaatgca ttaaaatatg
    15901 acctgtttta tctgcagaat agttacagcg tttcttagaa gctcctccca ttaaacgctg
    15961 agctactcca ccttgctcat ttcttgaaaa caaggttcct ataaaatcca tattaaaaat
    16021 agcctttcca gctaattcgc aaaattttaa agccgcgtct tgatctacca aataagctcc
    16081 gcctttaata gtatcataag catgtaattt ataggaatct ccattagaaa aatcagtaac
    16141 tccattaatt ccaccctctg ccatacaagt tgcgttacgc gatggcatca tctttgtagc
    16201 tactacaacg cttaattttg gattttcttt tctcactgcg gctgcagcac gcaaacctgc
    16261 tccacctgat ccaattatca aaacatcgca agaaggtaaa tttgcatctt tatccatctt
    16321 agatgaatca tctaaagcat aaactccact tgaacttgca actaaagctc ctacactaat
    16381 acaggctgtt tttataaaat ctcttctaga aaattcaccc atatcattct ccttatttaa
    16441 aaaaattaat aataattttt aatgtaagtc aatcttacat aaccgcatgc caaaaatcca
    16501 aaaacaaact ctcctttcaa tataaaatgg attaaaaaca aatttataat ttagtaaata
    16561 taaaaaagca taagataaat aatcaaagaa gatagatgaa tataataaaa taaatattaa
    16621 aaaatttttg caatatatca taatctattc cttgcaaatt aaacggaatg attatacctt
    16681 aaaaaaataa caaaaagtta atattaatta agataatatt tatcttaatt aatatatagt
    16741 taataaaatt atcaaatcat taagccttaa aaagcttaaa ttctccattc ataaattgca
    16801 ttctagcgct taaatgatca agataaaaaa cttcaaattt tggattttgc ggagtttcat
    16861 aaagatttac aagataagga tattttttaa acatcatttt tttaacttct aaatttggtt
    16921 caaaaaccgc attagctcta agtcttaaaa aagtcccatc ttttgcacaa gaacaaaatt
    16981 caataccatt ataatttttt atatgcttaa aaagtccttt tgtatttgct gtgcaaaaat
    17041 aaattttatc tcccacaagc aatggacttt gtataggacg cactctagga tttccacaag
    17101 ttcctaaagt ggctaaaaat gctggtgcat tatcatctaa aaattgtgct atttctttta
    17161 aatccatcat ttttccttac atatataaac caccattgat cttaagcaca tcgcctgtca
    17221 cataagaggc ataatcacta agtaaaaacg ctacacaatt agccacttct tcaggttctg
    17281 caaagcgttt taaagggata ttgtcttgat aggtttgttt gatttcatca cttaaaactt
    17341 cagtcatatc gctttttatg aaacctggag tcacacagtt aaagcgtaaa tttctacttg
    17401 ctccttcttt agcaaaagat ttagtcatag ctatcattcc acctttacta gcagaataat
    17461 ttacttgtcc agcattgccc atttctccga caatagaagc gatatttaca acagcaccaa
    17521 aacgtttttt actcatggtt tttaaagctt ctctacaacc taaaaaagct gagcttaaat
    17581 ttgtatctac aacgctacta aagtcctcta atttcattct taaagcaagt ttatcatttg
    17641 taacgcctgc attatttaca agataactta attctccatc actctcaact atagttttta
    17701 caccgttttc aaactcatct tctttgcttg catcaaattt aatcacagca gcaacgccac
    17761 cacttgcaat aatttcatct tttaaagcat ctgcaagttc aggttttgaa cgataattga
    17821 tccaaacttt aagtccaaaa cccgccaaag tttttgcgat agaagcacct attcccttac
    17881 ttgctccagt aattaaaaca ttttttccac taaatttcat tatctatcct taataagttt
    17941 aattttaaaa attgcaatct taacaaattt cttataaaaa aggcaaacaa actaaaataa
    18001 agcctcattc atttcttttg gaatttctaa gtctaaaatt ttaagcacgc ttgcagcgat
    18061 attgctaagc cccatattat ctttaatctt tgaaactccc tttgcttgca caaaaacaaa
    18121 aacatcaaaa gtggtgtgat tggtaagcaa atttcctttt tcatcttgca tagcctcgca
    18181 atttccatga tcacttgtaa tgataaaagc ataatcatgc ttttttgcac attctataat
    18241 ctcgcccaaa caagtatcca ccgcttcgac agcctttata gcagcattaa aatcacctgt
    18301 atgtccaacc atatctccat ttgcaaaatt taccactata aaatcctcac ccttttctat
    18361 gccttttttc actgcatcac acacttcaaa agcactcatt tggggttttt catcataagt
    18421 ttttatcttg gggcttggga ttaaaaccct tgtttcattt tctaaaagct cttcttttcc
    18481 gccattaaaa aagaaagtta catgggcgta tttttcggtt tctgcggtat gaagctgact
    18541 aagccctgct ttagaaatca cttgcgctaa agtattttca attttttctt tttcaaaaag
    18601 cacagggagt ttaaatttat catcataaac actcatagta agtaaatttt caaagatttt
    18661 ttcgcgttca aactctttaa aatccttaga atttaacact tcaacaagtt gtttcattct
    18721 atcatttcta aagttgataa agataatgcc atcttcttct ctcatgccct tgtaattctc
    18781 attttgagct gctttgataa actcatcagt aacattttca tcgtaagatt tttgtaggta
    18841 ttctaataaa tttggcactt tataagcctt acctaacaag cactcataat actcttttac
    18901 cctatcccaa cgcttatctc tatccatagc ataaaaacgc ccacaaagcg tagcaaaatg
    18961 cacgcctaag ttttcacaaa attcttttaa atcttttatg aaatttaagc cactttttgg
    19021 acttacatca cgcccatcag tgattgcgtg agcaaaaact tcattgccat ttttcgcaca
    19081 aatttcaagc atggctttaa aatgcgtatc catagaatgc accccgccat cactataaag
    19141 ccctataata tgcactcttt tacattttgc taaaagtttt tgtaaattct catttttttc
    19201 aagttctttg ttttcaatgg ctttattaat acgcactaaa ttttgataaa taatacgccc
    19261 acttcctata cacatatgcc ctacttcact atttcccatc tgcccttctg gcaaacctac
    19321 agctaaacca ctcgttttta gtaaagaatt tgggacttcc ttaaaaagct tttcataact
    19381 tggtttttta gctgcttcaa aagcattaaa cttactattc ttattatacc ctattccatc
    19441 tgtaataatt aaaacgcatt tttgcttcat ttttctctct tttataagaa tttttttggt
    19501 tagattttac taaaattaaa cttttaaaaa ccaaaaagaa ggctaggttt tgtattatct
    19561 ttcagattta agtcattatg ctttttttac ttatattagt gtgcgtgcag gatttgcatt
    19621 ttttatcgct ttatgtttgt ctttattttt aatgcctaaa tttattactt gggcaaaagc
    19681 taaaaatgct agtcaaccta tttacgaata cgccccagaa actcataaaa ccaaatgcca
    19741 tactccaacc atgggtgggc ttattttcat tagttctgca gtaatcgcaa gtttattttg
    19801 tatcaaattt gataatattt ttgctataag tgctttactt tgtttgatac ttttttgttt
    19861 gataggactc atagatgatt taggcaaagt tctaaaaaaa aataatcatt caggacttag
    19921 tccaagaatg aagcttttag cacaaatcat cgctggactt atctgcatct tacctttata
    19981 ttttagttca gagcttagca cggaactttt tatacctttt tataaacacc ctctttttga
    20041 tatggaaatt tttgccattg ctttttggat tttggtttta atttctagct ctaatgctgt
    20101 aaatttaacc gatggacttg atggcttagc tacagttcca agcatttttt ctttatctac
    20161 tttagggata ttcttatatt tgagtggaaa tttaaattat agtgaatatc tacttttgcc
    20221 aaaaattcaa ggacttggtg aagtagtgat tatttgtgct gcattaatcg gtgctttaat
    20281 aggattttta tggtacaact gttatcctgc gcaggttttt atgggggata gcgggagttt
    20341 agctttaggt ggattcatag gatttttagc tatcattagc aaaaatgaaa ttttactttt
    20401 actcataggt tttgtttttg ttcttgaaac tgtttctgta attttacaag ttggaagttt
    20461 taaaattttt aataaaagag tatttaaaat ggcacctatt catcatcatt ttgaaaaagt
    20521 tggctgggta gaaaataaaa ttatagtgcg tttttggatg atagccttac tttcaaattt
    20581 acttgcactt gcatcaataa agctaagata atgaaaattt cactttttgg atacggaaaa
    20641 accacacgcg ctattgctga aaatttggta gataaatttg ggccttttga tatctatgat
    20701 gatcatttta cagaaacaaa aaaagataca ctaggaaatt tacttttaaa tcctaatgat
    20761 tttgatgata atttaagcga tattgaaatt cctagtccag gttttccacc aaagcacaaa
    20821 ctcattcaaa aagcaaaaaa tttacaaagc gaatatgact ttttttacga tgtcatgcca
    20881 aaatccgttt ggataagcgg aaccaatggc aaaaccacca ccacacaaat ggctacacat
    20941 ttattatcac acattggtgc tgttatgggt ggaaatgttg gaactccttt agcagagctt
    21001 aatccttatg caaaactttg gatacttgaa acttcatctt ttaccctaca ctacactcat
    21061 aaagctaaac ctgaaattta tgcactttta cctataagtc ctgatcatct ttcttggcat
    21121 ggaagttttg ataattatgt tcaagataag ctaagcgttt taaaaagaat gaatgaatgt
    21181 gatgtagtaa tactgcctaa aatttatgca aatactccaa caaaagctca taaaataagc
    21241 tatgaagatg aaaaagatct agctgttaaa tttggcattg atacggaaaa aatttccttt
    21301 aaaagtcctt ttttactcga tgctatcatg gctttagcta tagaaaaaat tctacttgat
    21361 actttaagct atgagctttt aaatagcttt gtaatggaaa aaaataaact cgaagagctt
    21421 aaagacagtc aaaataggct ttgggtaaat gacactaaag ctacaaatga aagtgctgta
    21481 atggctgcac ttagtcgcta taaagataaa aaaatccatc ttatcatagg gggagatgat
    21541 aagggtgtag atcttagcaa tttatttgat tttatgaaag gatttgatat agaactctat
    21601 gctataggta ttagtactga aaaaatgctt gattatgcaa aaaaagcgaa tttgaaagcc
    21661 tataaatgtg aagttttatc taaggctgta aatgaaattt caaatcactt aagagtcaat
    21721 gaagtggctc ttttaagtcc tgcttgtgca agtttagatc agttcaactc ttacgcagag
    21781 cgtggaaaag tctttaaaga atgtgtgaat aaaatttaat ttattttaca atccatacaa
    21841 atatattaaa ctttccaaac ccctaaaaac accctattct ctctaaaaac cctaaccagc
    21901 aacaaactct tttttaaaca cgattctaag caccatctaa aacaacaata aaaataaaca
    21961 taggatttat atataaagta agtaatgaag aca
//
LOCUS       DARGEX010000014        21025 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.014, whole genome shotgun sequence.
ACCESSION   DARGEX010000014 DARGEX010000000
VERSION     DARGEX010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21025
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.014"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1119)
                     /locus_tag="SF010_000442"
     CDS             complement(<1..1119)
                     /locus_tag="SF010_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8229404.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTAL"
     gene            complement(1100..1936)
                     /locus_tag="SF010_000443"
     CDS             complement(1100..1936)
                     /locus_tag="SF010_000443"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG8229405.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     TVIMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(1938..4040)
                     /gene="topA"
                     /locus_tag="SF010_000444"
     CDS             complement(1938..4040)
                     /gene="topA"
                     /locus_tag="SF010_000444"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG8229406.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            4235..5506
                     /locus_tag="SF010_000445"
     CDS             4235..5506
                     /locus_tag="SF010_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229407.1"
                     /translation="MNDKIYKFHPNDTKMDKKIIQITEKSGFKVAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(5534..6799)
                     /gene="secY"
                     /locus_tag="SF010_000446"
     CDS             complement(5534..6799)
                     /gene="secY"
                     /locus_tag="SF010_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG8229408.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(6799..7191)
                     /locus_tag="SF010_000447"
     CDS             complement(6799..7191)
                     /locus_tag="SF010_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG8229409.1"
                     /translation="MNLTKAAGSTRKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVPKIKDENISVTGSK"
     gene            complement(7196..7639)
                     /gene="rpsE"
                     /locus_tag="SF010_000448"
     CDS             complement(7196..7639)
                     /gene="rpsE"
                     /locus_tag="SF010_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG8229410.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(7651..8007)
                     /locus_tag="SF010_000449"
     CDS             complement(7651..8007)
                     /locus_tag="SF010_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG8229411.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(8017..8553)
                     /gene="rplF"
                     /locus_tag="SF010_000450"
     CDS             complement(8017..8553)
                     /gene="rplF"
                     /locus_tag="SF010_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG8229412.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(8632..9027)
                     /gene="rpsH"
                     /locus_tag="SF010_000451"
     CDS             complement(8632..9027)
                     /gene="rpsH"
                     /locus_tag="SF010_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG8229413.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(9037..9222)
                     /locus_tag="SF010_000452"
     CDS             complement(9037..9222)
                     /locus_tag="SF010_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG8229414.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(9224..9769)
                     /gene="rplE"
                     /locus_tag="SF010_000453"
     CDS             complement(9224..9769)
                     /gene="rplE"
                     /locus_tag="SF010_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG8229415.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(9773..10006)
                     /locus_tag="SF010_000454"
     CDS             complement(9773..10006)
                     /locus_tag="SF010_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG8229416.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(10006..10374)
                     /gene="rplN"
                     /locus_tag="SF010_000455"
     CDS             complement(10006..10374)
                     /gene="rplN"
                     /locus_tag="SF010_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG8229417.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(10374..10625)
                     /gene="rpsQ"
                     /locus_tag="SF010_000456"
     CDS             complement(10374..10625)
                     /gene="rpsQ"
                     /locus_tag="SF010_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG8229418.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(10635..10820)
                     /gene="rpmC"
                     /locus_tag="SF010_000457"
     CDS             complement(10635..10820)
                     /gene="rpmC"
                     /locus_tag="SF010_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG8229419.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(10807..11232)
                     /gene="rplP"
                     /locus_tag="SF010_000458"
     CDS             complement(10807..11232)
                     /gene="rplP"
                     /locus_tag="SF010_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG8229420.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(11235..11936)
                     /gene="rpsC"
                     /locus_tag="SF010_000459"
     CDS             complement(11235..11936)
                     /gene="rpsC"
                     /locus_tag="SF010_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG8229421.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(11936..12379)
                     /gene="rplV"
                     /locus_tag="SF010_000460"
     CDS             complement(11936..12379)
                     /gene="rplV"
                     /locus_tag="SF010_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG8229422.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(12390..12671)
                     /gene="rpsS"
                     /locus_tag="SF010_000461"
     CDS             complement(12390..12671)
                     /gene="rpsS"
                     /locus_tag="SF010_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG8229423.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(12673..13503)
                     /gene="rplB"
                     /locus_tag="SF010_000462"
     CDS             complement(12673..13503)
                     /gene="rplB"
                     /locus_tag="SF010_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG8229424.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(13505..13786)
                     /locus_tag="SF010_000463"
     CDS             complement(13505..13786)
                     /locus_tag="SF010_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG8229425.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            complement(13789..14403)
                     /gene="rplD"
                     /locus_tag="SF010_000464"
     CDS             complement(13789..14403)
                     /gene="rplD"
                     /locus_tag="SF010_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG8229426.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            complement(14400..14975)
                     /locus_tag="SF010_000465"
     CDS             complement(14400..14975)
                     /locus_tag="SF010_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG8229427.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(14985..15296)
                     /gene="rpsJ"
                     /locus_tag="SF010_000466"
     CDS             complement(14985..15296)
                     /gene="rpsJ"
                     /locus_tag="SF010_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG8229428.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(15494..16255)
                     /locus_tag="SF010_000467"
     CDS             complement(15494..16255)
                     /locus_tag="SF010_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG8229429.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVQFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(16290..18284)
                     /locus_tag="SF010_000468"
     CDS             complement(16290..18284)
                     /locus_tag="SF010_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG8229430.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(18253..19053)
                     /gene="rsmA"
                     /locus_tag="SF010_000469"
     CDS             complement(18253..19053)
                     /gene="rsmA"
                     /locus_tag="SF010_000469"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG8229431.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            19133..19669
                     /locus_tag="SF010_000470"
     CDS             19133..19669
                     /locus_tag="SF010_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG8229432.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            19693..20763
                     /gene="rlmN"
                     /locus_tag="SF010_000471"
     CDS             19693..20763
                     /gene="rlmN"
                     /locus_tag="SF010_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG8229433.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMSINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            20760..20858
                     /locus_tag="SF010_000472"
     CDS             20760..20858
                     /locus_tag="SF010_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229434.1"
                     /translation="MTMLDIFEIIFITAVVIIGFGGIVFVVTKEKK"
     gene            complement(20872..20948)
                     /locus_tag="SF010_000473"
     tRNA            complement(20872..20948)
                     /locus_tag="SF010_000473"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20912..20914),aa:Met,seq:cat)
BASE COUNT         6306 a         3959 c         3067 g         7693 t
ORIGIN      
        1 taacgctgtt aaaataagtg ctgaataaag cttctcatca ataaccttgc ccgaataacc
       61 cagagtagct gttgctataa gcaaggttaa aggcatagaa tgactaagac caaataaaat
      121 catattttta aaaccaattc tttttaaaaa aacacttgca cataaaattc ttaaacccac
      181 cataacaaac ataagtaaaa atgcttgtaa aacgatttta taatctaaaa tcattttaag
      241 atcaaaggtt gaacctatat ggataaaaaa aatagggatc aaaaacccgt gtccaaaagt
      301 agaaagcttg tgctcaagat cttttttatg atcaaaaaaa gtagctataa atgaacctgc
      361 tataaaagaa ccaagaacga tttcaagttt tgtaataacc atagcaacaa tgatcagtat
      421 aaaaatggcc atacaaaatc ttatatcttt ttcattttta tcttcccatg gcataagcac
      481 aactttaagc tgaggatacc accaaaaaag cacaccaagc attttaaatc cgagcaaaca
      541 aagtcccaaa aagatattaa gatataaaat actttgcgct acatcaataa tacctgttcc
      601 ttcgcgcaaa aaagctcccg ctatagtcaa aagcacaata gaaatcacct cagctaaagt
      661 agccactatc atagcaatat ttagccaata acactctttt ccaaaatcct taaaaagcaa
      721 agataaaagc cctacactca tcacaggtat aatgataaca aatactaaag aaagtccaaa
      781 aatccatact ataagagaag ataaagcgta aagtaaaaaa atataaaaaa aacttttttt
      841 ggcgacttct ttatccatat taaaaaaggc tcttaaattt acctccatac ccgctataaa
      901 cattagataa taaaaaccta cattggctaa aagtgcaaaa ttttcacttt ttcctatgaa
      961 accaaaatat gctattattg cccctaaaat aatttcagta gctgaaagag gcaagcgtaa
     1021 aatttttgca atatgcggag aaaaaagtaa gcataaagct ataacaataa gaatttttag
     1081 atcaattaaa ccttgtggat caatgacact ctgatgcaaa agtaaatccc atttctttta
     1141 attttattat atcttgactt ggttcttcac ctttagtggt taaataatcc cctataacaa
     1201 tagccccagc acctgcttga aaaatttcat actgcctttc ttgcaatacc acttcacgtc
     1261 cacctgcaac catgattaca gtttgaggca aagcctcttt ggtgtcacgc acgattttta
     1321 aagcttcatc agcactaagt cttggaactt gtagttttaa attttcattt gctataaaaa
     1381 aattaatagg cgttgaaaaa ggttgtaatt cttgcaaaga ttttctaaaa cttagcctat
     1441 cttcttcgct ctcacccata ccataaattc caccacaaca aagcataagc cctgcttctt
     1501 tagcgtttaa attggtttga aatctacttt cccaagtatg tgtggtgcaa atttgtggaa
     1561 aaaattcctt agaactttca agattgtgat tataagaaaa aattcctgct tttttaagtt
     1621 ctttgagttg ttccacgctt gccataccat tacaggcaat taaaagcaaa ttaggtactt
     1681 ctttttgcac agccttggca gcttcgcaaa catactcaag cttttcatca tcaagcccaa
     1741 gtcctgccgt aaccaaacaa aaacccaagg cttcattttt ctttgccatt tttgcttcta
     1801 aaacgatttg tgaaagttct ttacgacgat atttttgaat atctgttttt acatgagcgc
     1861 tttgggtgca gtatttacag tcttctgaac aatttccact ggctatattt gaaatagcac
     1921 aaagcatgat ttgcattcta atccttcatt tcttttttga ttttacactt taaacattct
     1981 aagaatgtac cttttttaag ctcttttatc actaaagttt cgccacactc ttcgcatttt
     2041 tcttcacttg gtttgtattt gcttataaaa ttgcattttg gataagcact acagccataa
     2101 aatttaccac gttttgaaaa gcgttctacg atttcacctt tttgacaact tggacaagta
     2161 atgcctgtac cattagcttt agcttttgcg gctgtatttt cgctttcgtt tttgctttca
     2221 ctttttaaat ttcttgaata cttgcatttt gggaaattta aacacgctac aaattctcca
     2281 aaacgccctt ttctaatagc aagctctccg ccacaatcag gacaactttc gcctagtttt
     2341 gtgacagttt tttgactagc tatttttgtt tttccttctt cgatttttct cataaaagga
     2401 tagtaaaatt cttttaaagt ttcttgccaa tctgccttat cttctgcgat ttcatctagg
     2461 gtattttcaa ggtttgaagt aaatttacta tctactatat cgctaaaatt tttctcaagc
     2521 acttcggtta cattaaaagc aacatcgcta ggaatgagtt gttttttatc tattgttaca
     2581 taatcacggc ttgtaagtat agaaatggtt ggcgcatagg tagaagggcg acctatgcct
     2641 aaactttcaa gtttttttac aagtcctgct tctgaatacc ttgaaggtgg ttcggtaaaa
     2701 tgtgagttca tttctaaatt ttgcactttt aaattttggc ctattttaaa atttggcaaa
     2761 attttatcct tatccatatc accataaact ttataatatc catcaaaaag gatttttcta
     2821 ccgcttattt taaaaactgc tctatcattt tttacaaata cattttgagt ttgagagata
     2881 gcaggactca tctgacaggc taaaaagcga ttgtaaataa gtgtgtaaag ttttaactca
     2941 tctttgtcta aaaatttagc cgcaatttct ggagtaaaac ttaaatttgt agggcgtata
     3001 gcttcatgag cttcttgagc gcctttagtc tttgtagtat atacatttgc tttgcttgga
     3061 agatagtcct tgccaaaatt tgcttgtatg aattttcttg cattttctac tgcttctttg
     3121 gctaaattta aactatcggt tctcatataa gtaataaccc ccatcacgcc ttcatgggta
     3181 tttactcctt catagagctt ttgagctatc atcatggttt ttttagggtt aaaaccaagg
     3241 cgattgctgg cactttgctg caaggttgaa gtcataaaag gaggaggcgg agcgattttt
     3301 ctttctttgc tttcaatgtc gcttatagca taagcttcat ttttacaagc ctctagtata
     3361 agcttagcac gatctttgtt ggtaatggta agtttttcta tcttagcttt gtcaaactca
     3421 accagttctg catctaaatc tttttgaaaa atcatatcaa tactaaagta ttctaggggt
     3481 acaaaggcac gaatttcttt ttcacgatcg actatgatct ttaaagccgc actttgaaca
     3541 cgcccagcac taagtcctct ttgaattttt tgtcctaata aagggctgag cttataccct
     3601 acaatgcgat ctaaaagacg tctggtttgc tgagcattta cagagtgcat gtttaatttt
     3661 cttggatttt ttaaagcatt ttctatagcg cttttagtga tttcatgaaa aacaatgcgt
     3721 ggtaaggtgt tttcatcttt tcctatagct tttgcaatat gataggctat agcctctcct
     3781 tctctatctt catccgttgc aagatagact tctttggcat ctttggcttt gcttttaagt
     3841 tctttaacta aggcgctatg atcacttgtg attctatact cagggataaa ttcatcatct
     3901 tctattttaa tcccaaagct tgatttaggc aaatctctaa tatgtccttt agaagcgata
     3961 acttcataat cttttcccaa aaaatttcct atggttttag cttttgcagg agattctact
     4021 atgattaaat ttttcttcat tttgcaccct tgttaaataa aaagctgaat ttagctaaaa
     4081 atatttaaaa ttctacttat aaaatatatt ttaatcaagc taaaatattt taaaaacaaa
     4141 actaccataa caaaataaat aaaatataat tttaagtaat tttaaataca aaccataatt
     4201 tttggagtat aataaaataa aaaaggtaaa aattatgaat gacaaaattt ataaatttca
     4261 tccaaatgac acaaaaatgg ataaaaaaat aattcaaatt actgaaaagt ccggatttaa
     4321 agtagctgtg ttttctatgg ctgctatgac tatgctagga agtgtggtca tttcatctgc
     4381 tctgcctgct atcaacagac attttgaaga acttttaacc caaagtggcg ctactcttgc
     4441 ttcaagtttc acattagctc atcttgatat acttgttcgc ttagttttaa ccatccctgc
     4501 tatttttgtt gtcattttat ctccatttgc tggtatttta atggataaat ttggcaaatt
     4561 aaaattcatt cttccagcta tggtggtttg gactatttct gggataagtg gctttttctt
     4621 aaatgatatt tatgctatac tgacttcaag agctattttt ggtatggcaa ctgcttttat
     4681 aatgacaggc gcttcggctt tgcttgggga ttattatagt cgtggtggct ttaatcgcag
     4741 agaaaatgct ttaagtcttc aaggattttt ttgtgcagta gggggtgctg tttttatttc
     4801 tattgcggga tttgtttcaa gttattcttg gcgttatcct tttttggtat atggacttgg
     4861 aattttaatt accttaatgg ctatcattta tctttttgaa cctagaaaat ttaaattcta
     4921 taatcataca aaaatagaaa caaaaacaaa ttattggcaa tttttcccta tctattttat
     4981 aggttttttt atcatggtag tttattatat ttcgccaact caacttcctt actatataga
     5041 agaacatttg ggattggatc ctaaatatat aggtatttcg atgtctgtat ctgcactatg
     5101 ttatggtttt ttctctctaa gctatagata tattataaaa ttcttaagta ttaaaactat
     5161 ttatgtttta actcttttta tcgtatcttg ttcttttttg ctgctttttt tagtagatag
     5221 ctttttcaca gttttaatcg ccttagcttt gcttggaatg ggtggaggta ttatgcttgt
     5281 aaataatacg gcttatcttt tttcaatctg tcctgaaaat gctcgctcta gggcttatgg
     5341 aattttagca agttgtatat ttttaggaca atttttaagt cctattatct ctcaacctat
     5401 cgttagacaa atgggtcttg tagatgcttt tttaatatgg tcaatagtaa tttttatagt
     5461 gtgcattgtg tttttatttt taaagcaaaa acctagaata aattagcaag aaaaatcttg
     5521 ctaattttat ttattacaaa cctaccgcac ttaaagtttg gtatttactc atataaattt
     5581 gagcttcaat ttttctcatc gtatcaagtg ctacttgaac tacaataagt acagaagtgc
     5641 cgccaaaatg aaaaggcaca cccataaatt tcaccaaaac ccaaggtaag gttgcaacaa
     5701 gccctaaata aatagaacct gataaagtta aacgagaagc cacttcgtta agataacttg
     5761 aagttccttc acctggacga attccaggga taaaaccgcc ttgttttttc aaattttctg
     5821 ctatgtcttt agcgttaaat acgatagaag cataaaaata agcaaagaaa attacaaaca
     5881 agaaagttag aacatgaaac aaataaccat ttggatttaa aaagtcatta atggcttgta
     5941 gataaggatt tgtactagtt tgtaaaattg ttgttggaaa catcaaaatc gcactagcaa
     6001 aaatcggtgg aataacccca ctaagattga gtttaatagg aatataattc ataatgcgtt
     6061 tgttttgatt ttgcattaca actttacgag aataagaaat aggaattctt ctttctccaa
     6121 gttctatata aataatcacc cctatggtga ttaaaatcaa agcaaaaatt gcaaaagcgg
     6181 ttaagaaatt catctcgcct gaattgattt gtcctacagt tcctgaaatc gctcttggaa
     6241 tacctgaaac aatacctgca aaaatgatta aagaaatacc atttcctata cctctttgtg
     6301 tgatttgttc gccaagccac attaaaagca tagttccagc aagcatagaa atagcacaaa
     6361 gtgcgataaa catatttaaa tcttccacca ttatagcccc tgcaccacca cgaccgtgca
     6421 agctttgcaa acctatagca acgcctatac tttgaaccaa agtaatcaca atagtcgcat
     6481 aacggataat ttgcatatat ttttgcatac tatcacgctc ttttttcatc ttaccaatat
     6541 ttggaaaagt tgctgcaaga agctccataa taatagaagc agtaatataa ggcataatac
     6601 ctaaagaaat gatagaaaag cgttcagccg ctccaccact aaaaacatta aataaaccca
     6661 aagcattgtt ttgattgtta ttaaaaaatt ccgcaatcac atcagcattg acgccaggaa
     6721 ctggcacata agccagaacc ctataagcaa ataaaaatgc taaggtgatt aaaatcttat
     6781 tcgtcaatgc tctattcatt attttgatcc ggtgacgcta atattctcgt ctttgatttt
     6841 tggtactaag tcttttgcac ttgcaccaat taatttgatt ttattcacag attttgaaat
     6901 tttgtgaaca cttttaatgc tctcaaatgt aatttcacta agctctttta cagctgtgat
     6961 tttttcaaca ttgatcacat aaggtttttg aattttagaa gtaaaaccta cttttggtag
     7021 tcttctttga agtggttgtt gacccccttc aaaacctctt ttttcattat aaccttttct
     7081 agcagtttga cctttacccc ctttagtagc agtcttaccc atgccagaac cttgaccacg
     7141 gccaattctt ttagttttac gcgttgaacc cgctgctttt gttaaattca tcttcttatc
     7201 cttttaacat tgttaaagct ttgattgtag cacgaaccac attagctgaa ttatttgaac
     7261 ccaaagactt ggttaagatg tctttaatac ctgcaagttc cacgataggg cgtgtagaac
     7321 cacctgcgat aactcctgta ccttcgctag ctggtttaag taaaattcta cttgcgttgt
     7381 atttcacctc tacatcgtga gcgatagttg agcctttagt tttaacttca acgatatttt
     7441 taaacgcatc gtcaacagct ttacggatgg catctggaac ttccttagcc ttaccataac
     7501 caacacctac taaacctttg cggtttccaa cgataactaa agcagtaaat ctaaatcttc
     7561 taccaccttt aacaacctta gtaactctgc cgatatcgac gattacttct tcaaattctt
     7621 ctctattata tttttccatc gatttacccc ttatagccta atgccatttt ctcttaaaga
     7681 ttcagccaat gctgcgataa caccatgata tacataacca tttctatcaa aaacagcttg
     7741 ttctatcttt ttagctttta aagttttagc aaattcagca gcgatttttt tagcaccttc
     7801 tttatttgct ttaacgccaa gtttgcgtcc atcaactgct gctaaagtta cagcttttac
     7861 atcatcaatc gcttggatat atagagttct gtttgattta aatacagaaa ttcttggaaa
     7921 attttcacaa cctgaaattt tcgctctaat tctttttttt cttttgattc ttaaagttag
     7981 ttttcttttt aatacatttg ctctcatatt ctacccttac ttcttagatg tcttaccagc
     8041 tttgcggata atgcgttcat cagaatactt aacgcctttt cctttatatg gctctggtgg
     8101 tctaaattca cgaatttgag cagcaacttg acctacaact tgtttatcac ttcctttaac
     8161 tgcaatagta tttttatcca ctacaatttc aattccttct ggaatatcat aattaatagg
     8221 atgagaaaaa ccaaggctta gttctaaaac tttacctttt aaagctgctt tataaccaac
     8281 tccattgatt tcaagagttt ttgaaaaacc ttgagttaaa cctacaacga tattgtaagc
     8341 taaagctctg taagttcccc aataagctct actttgtctg tcttcacctt ttggagaaaa
     8401 aagaatatta ttatctttaa tctcaacatt tacatttgct ttagtatcaa gttcttttgc
     8461 taaatttcct tttttaaatt taagcaaatt tccttctaat tttacttcta ctcctgctgg
     8521 aatagcaatc ggttgtttac ctatacgaga catatttttc ctttttattt gtctaggata
     8581 tttctacttt tttaaaagaa tggataccca atgccataaa aagcagattt tttaccaaat
     8641 ggtacataaa atttcgccgc caacacctgc tttataagct tcatcattag ctaaaacgcc
     8701 atgacttgtg ctaactacga tagtaccata accattttta aaacgcttga tttcatcttt
     8761 acctttataa acacgacgac caggcttaga aattctttta agctcattga taacactctt
     8821 acctttttca tcgtatttta aaactacatt gataaatttc tttttatctt cttcaataac
     8881 attaaaactc tcaatatagc ccttagcttg aaaaattcca actaaagctt ctacaacttt
     8941 agaatgtaaa agcttggttg tttcaagctt tctcattcct gcatttctga tacgagtgag
     9001 tgaatctgaa ataatatcat ttatcatatt ttatccttac caacttgctt tcttaagacc
     9061 tggaatcaaa ccttcgttgc ccatttttct taagcaaact ctgcaaattc caaaatctct
     9121 ataaaccgaa tgcggacgcc cacaaatttg gcatcttgta taagctctaa ctttaaattt
     9181 aggcttgcgt gccgcttttg caatcattga ttttttagcc atcttacttt ccttttgtaa
     9241 atggcacacc gataagttct aataactttt gtgcctgttt gtcattttgt gctgttgtaa
     9301 ctatagaaat gttcatacca tgagttctta aaattttatc atactccact tctgggaaca
     9361 tcaactgctc atcaagaccg aagttatagt ttccgcgtcc atcaaaacca tctctactta
     9421 aacctctaaa gtctttcacc cttggcaaag caatagaaat taatttatca agaaaagcat
     9481 acatattttc ttttcttaaa gttaccatta cacccacagg aaaaccttcg cgaactttaa
     9541 atcctgcaac tgatttttta gctttagtaa tcacagcctt ttgtcctgca attaaagaaa
     9601 tagtatctgc aacattttgc aatacttttt gatctttagc caactcacca gcacctacgc
     9661 tgataactac tttttcgatc acagggataa gcataggatt tttaatatca aattctttaa
     9721 ccaatgcagg tttaatgctt tgattatatt tttcttttaa tctcatcatc gcttactcct
     9781 gaacttttgc cacattggaa atatccattg gcatttcttt attgataaaa ccaccatttg
     9841 ggtttttctc actcggctta atagcttttt tagcgatttt acatccttca actaccactt
     9901 taagtgtttt tggatatacc gctaaaactt tacctgtttt acctttatca tcgcctgtga
     9961 taaccttaac gctatcacct tttttgattt ttaatttaac cgccattata atacctccgg
    10021 tgctagtgaa acgattttca taaagccacc atatctaact tctctgccca ctggcccaaa
    10081 gatacgagtt ccgataggct ctcttttgtt gtcaagaata accgcagcat tttcatcaaa
    10141 acgaatcaaa gaaccattat ctctatgaat ttctttttta gttctaacga taaccgcttt
    10201 taccacttga ccttttttaa cttttccatt tggtaaagct tttttaacag atgcaacgat
    10261 tacatcacct acggtagcgt atcttctttt gctaccccct aaaaccttga tacacattaa
    10321 ttcttttgca ccgctattat cagcaactgc aagtcttgta aaactttgaa tcattactca
    10381 actcctgtag ctaatacaga ttttaagcga aatgattttc tttttgaaag tggtctgcat
    10441 tctactgcaa caacagtatc acccacttta acttcatttc tctcatcatg aattagatat
    10501 tttttaaagc gtttaacaat ttttctatat cttggatgaa ccacttttct ttcaaccaaa
    10561 acacttgcgg ttttttcacc agcgatttta acaacaacgc cttgaatttc tcttttaaat
    10621 gccattttct atccttatct taaagcgtta attgctgtat ttattctagc aatgtctttt
    10681 tttacttggc taatctcttt tggattagta agttgcattg tttttagctt ttgttttaaa
    10741 gtgaataaaa gcaccttttt ttcttttagc attgttgcaa gctcagctgc tgttttatct
    10801 ttaatctcag tatatttcat tttggctctc tcttgtaaca aacttagttt taaatggaag
    10861 tttatgcata gctaaagtca atgcttctct tgccatttct tcgcttactc ctgccatttc
    10921 ataaataata cgacctggct tgatattcat tacccattct tcaacagcac ctttaccttt
    10981 acccatacga gtttctaaag gtttttttgt caaaggctta tctgggaaaa ctctaatcca
    11041 agtttttcct tgtcttttaa caaaacgagt taaagcgata cgcgctgctt cgatttggcg
    11101 tgagttaatg cgtcctgctt cagttgcttt taatgcaaat tcaccaaaag taaattctgt
    11161 tccacgatta gcataacctc tgttacgccc tttcatcatt ttgcgatatt tagttctttt
    11221 tggcattaac atgattattt accccttctt gtgcgtcttg gctttttagc tggagcactt
    11281 tcttcagttt tttcaggttg catacctttg tgcaatactt cacctttaaa gatccatact
    11341 ttaaccccta tgtttccata agtagttcta gcttctgcaa aaccataatc aatttttgct
    11401 cttaaagtat gaagtggaac gcgtccttca agataccatt ctgttcttgc catttcagca
    11461 ccgcctaaac gaccagaaac tgaaacttta atccctttag cacctgcttt ttgcgcacct
    11521 tgaattactt ttttcatcgc tcttctaaaa gcaattcttt tttcaagttg agttgcaaca
    11581 ctttcagcag caagttgagc tgaagctcct gcttttcttt cttctttgat attgatattt
    11641 acatctttac cgattaaatc ttgcaattct tttcttaaat tatcaacatc actacctttt
    11701 ttaccgatga tgatacctgg tcttgcggca actacagtaa cgcgaagttt tttagcagtt
    11761 ctttctacta aaatttgact gattcctgcg taataaagtt ttctttttaa gaaagctctg
    11821 attttgtaat cttcaccgat attttctact aaatttgctt tagtcggaaa ccatcttgat
    11881 tcccaatttc tattgattcc tagtcttaga ccaattggat taactttttg tcccattagc
    11941 tttccttttt cgctgttgct tttttagtgc ttgttgtttt tttagctgga gcttttgttg
    12001 tagtagtctt tttagctgct ggagcttttt tagctactgt ttttttctct tcagctttca
    12061 cttctgcttt tgccacttct actaaaatat gtgaagttgg ttttctaata cgacttgcac
    12121 ttcctctagc tcttggtcta aatcttttta ataccgcagc tgcgtcaaca cgacaacttt
    12181 ttacaaccac ttcgtttgct tcaaagccac catttgctac tgcacttgaa attgcatttg
    12241 cgatgtattt tgcaccttta tttggcataa attttaaact agccatagct aattctgcat
    12301 tcatcccctg aacttctcta gcaatcaatc ttgctttagt tggagataat cttatgaatt
    12361 taattaatgc tttactcata tcttatccct tacttaccaa ttttcttttg cacagagcct
    12421 ttatgccctt tgaatgtgcg tgttggagca aattcaccaa gtttataacc gatgtgattt
    12481 tcagtaatat aaaccggaat gaagctttta ccattatgaa cattaaatgt aagtcctatc
    12541 atatcaggag taattgtgct tcttcttgac caagttttaa ttggtttatt atcattagcc
    12601 tttttagcag cgatgacttt tttcattaca tgatcatcaa caaaaggacc tttttttagt
    12661 gatctagcca tcttactttc cttttcttct tgaaattatt agcttatcgc tagccttttt
    12721 acgacgagtt ttcgcacctt tggttggttt accccacgga gttactggat gacggcctga
    12781 atttttctta ccttcacccc caccgtgcgg gtgatctact gggttcattg cagaaccacg
    12841 agtttgcggg cggatacctc tatggcgatt tctacctgct ttaccgatag ttacattagc
    12901 ccattcttca tttccaactt cgccgatact tgccatacat tcagctaaaa cttgtctcat
    12961 ttcgccactt gcaagtctta aaataacata tttttcttct ttacccataa gttgtgcata
    13021 agcacctgcg gaacggatca tttgaccgcc tttacctggt tttaactcaa cattatgaac
    13081 aatagtaccc acaggaatgt ttttaagttt cattgcattg cctggtttaa tatcaagtcc
    13141 gctttcagca gctgaaacta tatcaccaac gcttaatcca cgtggttgaa gaatatatct
    13201 tttttcccca tctttataag caatcaaagc aattctacaa tttctatatg gatcatactc
    13261 gattgcttct actttgcctt ctataccgaa tttacgacgt ttaaaatcaa taattctgta
    13321 aagtttttta gcacccgctt ctttatgacg acttgtaatt cttccatagc tgttacgacc
    13381 cgcgtgtgct ggaagtttaa caagtagtga gcgtacactt ggtttagctg taatatcttc
    13441 agaacttaaa cctgtgatat atcttctact tggagtatat ggtttataag ttttaattgc
    13501 catcttaagc ctccgtattt tctaagctaa caccttcagg tagcttaaca tagaattttt
    13561 tgtaatcgtt tctttgacct aaacgacctc taaaacgctt aacttttcca tccattctta
    13621 atgaattgat gctttttgga gttacaccaa aatactcttt taaaaccgct tttaagcctg
    13681 ttttagtcat ctttggtgaa gtttgaataa ctacgacacc ttgctcttgc aaattcaaac
    13741 ttttttctgt gtaaagtata gtctttatat cagtaatatc tgccataatt atccctcttt
    13801 tgtaatagat tctaacgctg atttttctat gataacagca ttaaatacag atactaaata
    13861 agcatttact tcagttacat caactacata gcaatttgct aaatttctgt aagctaaaag
    13921 tgttttttca tctagtaaat ctttaacgat taaagcatct ttgacgccaa gttttttaat
    13981 cacagcgttt gcatcttttg ttttaccact ttcaatagcc aaagaatcag cagtaaataa
    14041 cgctccctta gctgctttat ctgctaaagc tctttcaagc gccaatcttt tttgtttttt
    14101 atttactttt tggaagtagt ttctttcatt tgttggacca aaagcaaccg caccgcctac
    14161 ccaaacgtta gttcttgttg aacccgctct agcaccgcca cgaccttttt gtctccaagg
    14221 ttttttacca ccaccactta catcacttct acctttagta tgagctgtat ttgctcttaa
    14281 acttgcaagg taagatttta catataagta aagattgtgt ggatttactt ccgcatattt
    14341 tgaaggtaaa tcaagttcac ctgctttttc taatttatca tttaaaacaa ctactttact
    14401 cattttgcaa tccttatttt acccatagca ccattataac ctggtactgc acctttaact
    14461 actaaaattt tgttttcagc atcataagat acaacttcgt ttttaacggt cactttagta
    14521 tttccatagt gtcctgccat tttcatacct ggttgaacac gacctggcca ttctctattg
    14581 ccaatagatc cgtggcgtct gtgaaatcta gaaccgtgac ttgctggacc ccctgcgaag
    14641 ttatgtcttt tcataacacc gctataacct ctacctttag tgttaaagct tacttttaaa
    14701 atttttgctt catttaatgg agtttcatct aaatctcctg cttcagtatt tgctacttct
    14761 aaagtcgcaa atctattgta ttctgcagaa agattatact ttttttgttg tcctgcgaca
    14821 catttattac ttgctttacc ttttggatat gctactaaag cctttccgcc ttcaacttca
    14881 catacttttg catttacaac tcttagtaaa gttacagcga tacttggatt agtaattgtt
    14941 ctgctcattc cgattttttc tacaatatat tccatatctt atccttactt acccatagct
    15001 cttacttcaa cgcttacttc tggcgctaaa tcaagcttag ttaaagaatc aactgtatct
    15061 ggagtcgctg ctactatatc tagcatacgt gcgtgaattc ttatttcaaa ctgctcacga
    15121 gaatctttgt taatgtgtgg agattttaaa actgtatagc gtttgatttt agtaggcatt
    15181 ggtatcggac ctctgatatc cgcacctgtt cttttaacag cttctacgat tgctgcaact
    15241 gttctgtcta gtactcgatg gtcataagct tttagcttaa gcctaattct ttccataata
    15301 tttcctttaa aaagaactcg ttagttaaaa actaaccaat ttataaaaat tgaaatgaga
    15361 gtatataaaa tcttgttttc aaagtcaagg aatttgatga aatttttcta ttattttcct
    15421 tttaaaaagg ataaaaatag aatttttaga atttaaaaat tatcattatt ttttaaattt
    15481 ttgcatataa tggtcaatat cttatttcat taaatttcaa aaaatctctt aatttttcat
    15541 attctccatt ttccaaatag cgatgttttc ccgcctttaa cataccaaga tctaaagccc
    15601 caaaagcaac acgcttaaga tccatgactt caagatcaaa atgtccaaaa aagcgtctaa
    15661 gctctctatt tttaccttca tttataacca ctctaagctt agtataacct ccacttgatc
    15721 caaaaatttc aaagtctata aaaggagcaa aactcataga ggtgattttg gtttttgcgt
    15781 gtgcgccttt tttttcattt ttaatctcaa gcccattttg catggcttcg atgacttgtt
    15841 tgctcaccgt acctttaact ttaaggtagt attctctttc taaatcgcta tgcattaaag
    15901 catcagcaat cacaggagaa tctgtaagca aaagcaagcc ctcgcttgca taatccagcc
    15961 tacctacgct aagccaagta ctaaattgtc ttggcaaggt atcgtatata gtttttcttc
    16021 cacgatcgtc ttttttactg acaatttcac ctttttgttt atggtagatt atcacgctaa
    16081 attgcgttct tttttgcact cttttgccct taacaaagac tttatcatca aattgaactt
    16141 catcgcttaa aagggcaatt ttgttgttta tttttactaa gccttgtttg ataagttcat
    16201 cagcttcacg gcgtgaataa cgagtgttat gggatataaa tttattaatt ctcatttgat
    16261 cttccttaaa agggcgtttt tgcccttttt tacattacaa aaatagttgg aactatggtt
    16321 gggtattttt taatctttct aaagatatgt tttcttaaga cttggcggat ttgattttct
    16381 aaaaatcttg gatcattgag tacttcatct ttaacattga tgaaaaattg tcctaaaact
    16441 tcagccatat ctttgctaaa agcatgatcg tgtttgtcag ctactaaccc atagctaaat
    16501 actcttggtt tattgatcag tgtttttgtg gctttgtcaa tttgtgcgat aataaccact
    16561 atgccactat ctgcaagttt ttggcgatct ataactacat catcggcgat ttgtttgttg
    16621 atttgattat ctacaaaaac tttacctgtt tttacggttt ttatgcgttt gacatatttt
    16681 tggcaaagtt ctacttgatc gccatcactc ataagataaa tatttctttc agggataccg
    16741 cacttcatcg ctgtttcttt gtgtttagtg atgtgattgt attctccatg aaccggtaag
    16801 aaaaatttag gtttggtaag ggttagcata agtttttgct cttctatact agcgtgtccg
    16861 cttacatgaa tttcactaaa ttcttgatac gctactttag ctcctgcttt taaaagatag
    16921 tcaagcaccg cagaaacact tgcttcattt cctggtatgg ctttagctga aataatcact
    16981 tgatctgtag gtttgatttt tataaattta tgctcatcag ttgccattct ataaagcgca
    17041 ctcatggttt cgccttgact tcctgtagtt acgataagca cttcattgtc tttatatttg
    17101 cttacttcat cagcatcgat gaaaattttt ctatcaagtt tgatgtagcc taattccata
    17161 gtggtataaa gatttctttc catagaacga ccgatcacac aaacttttct gccgtatttt
    17221 aaaccataag tgatagcctg ataaacacgg tggatattag aactaaaagt actcatgatc
    17281 accctgcctt tggtacgtgc aaaaatttga tcaaaagttg gccctacaga gctttcactt
    17341 tttgtataac cttctttgta cgaatttgta ctatcgctta aaagacataa aaccccttct
    17401 tctccataat gtgccaaacg tcctaagtct gttggatagc catcgattgg ggtttgatca
    17461 attttaaaat cacctgtgtg gataatagtt cctgcttttg ttttgatcgc aagtgctgaa
    17521 gcatcaatga tagaatgtgt gatatgaatc cactctatat caaattcgcc tatctcataa
    17581 acacggcgtt tttctacagg gcgaaaccat ttgcgttctg cttttaagcc atgttcttca
    17641 aatttgtttg aaatcattcc taaagccaaa ggtgtagcgt agataggaaa ttggaattct
    17701 ttaaagaaat aaggcactgc accgatatga tcttcgtgtg catgagtgat cactatacca
    17761 cgaattttat ctttaatttt tcttacatag tcaaaatcag ggatgataat atctacccca
    17821 tgcatagttc catcaggaaa actcatacct atatctacta taattgcatc tttattggtt
    17881 tcaaaaacac tgatatttcc accaatttct cctaaacctc ctaaaggagt gatgcggatt
    17941 ttatgctcgc tagaattatt atattttaaa gggtgtaagc ggttttcatg tgaaacacgg
    18001 ttagcttcta tgcattctgc aagagcgatt tgccaatctt cattacctgt gagttttgaa
    18061 ggaagattgc gatttttctt cttttttttc tcagttttat tttctgagtt ttcagaattt
    18121 tccttgttgg aattttgatc aatttttgga gtatcatttt cattttgcaa agaatcagct
    18181 aatttttttc tacgattttt atatttatag cgtttattgt tttttgaatt tgagttcgga
    18241 ttttgttcgt ttttatttat ctctttgttt tcgtccatat tcatccttta atttgtcata
    18301 aattttaagg tataaatcaa cgcaaatttc atgtggtctg atgttttctt ttaagccaag
    18361 agtgcttaaa acttctaaaa cttttgcttt atatgttttt aaatttccta agagttgttt
    18421 tctaggagct ttaaaacaat cttttagaaa atttttgaaa ttttctattt cgcaaagttc
    18481 atcaaaatcc ttagttttaa tcaaactcat caccgctgac ataacttttg gtggaggatt
    18541 aaaacattgt ggatcaacat caaaaagtat ttttctttcg caaatcattg cacttaaaac
    18601 acctaaggaa gaaaactcac tatttccttc tttagcgcag aatttttcag ccatttccct
    18661 ttgtaccatt acaataagcc ctagacaatt tttatcttct aaagctttta atataatgtg
    18721 acttgcaaca taataaggca aatttgcaac caaaaaatat ggtttttcat caagactagg
    18781 attaaaagct tcgcttgcgt cttgatggat caagttaaat tttccacatt caagttcttt
    18841 ttgaaatttc ttttttaaaa taggtatgag atcattatcg atttcataag cttttacttg
    18901 agaaattttt aaaagttctt gcgttaaatc acctaagcca ggcccaatct caatgatatt
    18961 gttcatctct ttgggtatgg cttggatgat ttttgctaat acgcttttat cgattaaaaa
    19021 attttgtccg tattgttttt ttgctttaac cataagaaat aattttatct aaaaattctt
    19081 aattaagtct ttttaggtag aattattttt gtaaaatttc ataaggatca aaatgattgt
    19141 ttgtgcgggt ggaaatgaaa atttttcttt tgcaaaagct ataggcatag gtttggttga
    19201 gtcagctttt catttgagtc aactttactt caaagaaaaa ccatcaaaac ttatatttat
    19261 aggaacttgt gggctttatg ataagggaga gattttagaa atttatagaa gttcgcacgc
    19321 ttttaatgta gaattttcta aaatttcaca tgcattttat actcctgcaa aatatgaaat
    19381 ttgcttagaa aaagaaaatg tttctcgtga aacaataaaa atcaattctt caaattatat
    19441 ttgtcaaaat tcaaaagcag caaaagaatt ttcaaaatta ggtttttttg cagaaaatat
    19501 ggaagccttt tctgttttga gcgtagctaa aaatttaaat attgatgcag agtgtatttt
    19561 gtgtgcaaca aatttttgca atgaaaacgc tcacgaagat tttataaaaa atcatcaaaa
    19621 ggcaaaagaa aaattagaag aatacttaaa aaaatatcat tatatttaaa aattcaaaaa
    19681 aggaaaataa ttttgaaaga gcttgttaat attttagatt ttttacctga agaattagga
    19741 gaaaaaatca aaccgatgtt tcgcgtgaaa caaatttatc aatggattta tcaaaaatac
    19801 gccaataatt tttccgatat gtcaaattta ccaaaagatc tacgtttaga acttgcgcaa
    19861 aattttcatt tctctcccgt aaaatgtgtt aaaaatgagc aaagtaaaga tggaagtata
    19921 aaatatcttt ttgaactcgt tgatggttta aggatagaaa gtgtgctttt gcctatgaaa
    19981 gaagaaaaaa tagacgcaga aggcaaaaga atttctcatg cgagatatac tatctgtgtt
    20041 tcttctcaag taggttgtaa aagtggatgt agtttttgtc ttactgccaa gggtggtttg
    20101 aaaagaaatt taagtgcagg tgagatagtc ggacaaattt tatggatcaa aaaacaaaac
    20161 aatatccctt atgaacgccg tgtaaatata gtatatatgg gtatgggcga gcctttggat
    20221 aatcttaaaa atgtttctaa agcggtaaaa attttagcgc aaaatgaggg acttgctata
    20281 agtcctcgcc gtcaaaccat cagtactagc ggtttggcaa aacaaatcaa agaattaggt
    20341 caaatgaatt taggtgtttt acttgctata tcattgcatg cggttaatga tgagcttcga
    20401 accgaactta tgtctatcaa taaagcttat aatatcgctg cgattatgga tgcggtgcgt
    20461 gaatttccta tagatcaaag aaaaagagtg atgtttgaat atcttttaat tgatggtatc
    20521 aatgataagc ttgaacacgc taaagaatta gtcaagcttt taaatggtat taaagccaaa
    20581 gtgaatttaa tactctttaa tccacatgaa ggaggtttat ataaacgccc tagtttagaa
    20641 aacgcgatta aatttcaaga tttactcagc aataaaggtg taacttgtac tataagagaa
    20701 agtaaagggc ttgatatctc agctgcttgt ggacagctta aagaaagggc aaaagaacaa
    20761 tgacaatgct agatattttt gaaatcattt ttataacagc tgttgtaatt ataggttttg
    20821 gtggaattgt ttttgtagta acaaaagaaa aaaaataatt attacactta atggtgtcaa
    20881 gggggagact tgaactcccg acctccggct tatgagacca gcgctctaac cagctgagct
    20941 accctgacta aaaataaaaa tataattata ctacttttta ctaaaaattt tctgattttt
    21001 aaaaaaataa ttttattttc aatat
//
LOCUS       DARGEX010000015        20911 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.015, whole genome shotgun sequence.
ACCESSION   DARGEX010000015 DARGEX010000000
VERSION     DARGEX010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20911
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.015"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..1556
                     /gene="kdpA"
                     /locus_tag="SF010_000474"
                     /pseudo
     CDS             1..1556
                     /gene="kdpA"
                     /locus_tag="SF010_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            1566..3625
                     /gene="kdpB"
                     /locus_tag="SF010_000475"
                     /pseudo
     CDS             1566..3625
                     /gene="kdpB"
                     /locus_tag="SF010_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            3627..4235
                     /gene="kdpC"
                     /locus_tag="SF010_000476"
     CDS             3627..4235
                     /gene="kdpC"
                     /locus_tag="SF010_000476"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEG8229435.1"
                     /translation="MFRTLLSFFVVMLILCTLVYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDVSKAVGSKLLGQDFNKPYFLHSRTSVSNYNTSDTNESSVSLGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            4238..6166
                     /locus_tag="SF010_000477"
                     /pseudo
     CDS             4238..6166
                     /locus_tag="SF010_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(6161..8134)
                     /gene="uvrB"
                     /locus_tag="SF010_000478"
     CDS             complement(6161..8134)
                     /gene="uvrB"
                     /locus_tag="SF010_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG8229436.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSATSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPANERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8289..8519
                     /locus_tag="SF010_000479"
     CDS             8289..8519
                     /locus_tag="SF010_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229437.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8509..8751
                     /locus_tag="SF010_000480"
     CDS             8509..8751
                     /locus_tag="SF010_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229438.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            8748..9185
                     /locus_tag="SF010_000481"
     CDS             8748..9185
                     /locus_tag="SF010_000481"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8229439.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9167..11020
                     /locus_tag="SF010_000482"
     CDS             9167..11020
                     /locus_tag="SF010_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG8229440.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITGYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIQVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(11030..12425)
                     /locus_tag="SF010_000483"
                     /pseudo
     CDS             complement(11030..12425)
                     /locus_tag="SF010_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            12571..13644
                     /gene="ispG"
                     /locus_tag="SF010_000484"
                     /gene_synonym="gcpE"
     CDS             12571..13644
                     /gene="ispG"
                     /locus_tag="SF010_000484"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG8229441.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKKRGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(13674..14372)
                     /gene="flgH"
                     /locus_tag="SF010_000485"
     CDS             complement(13674..14372)
                     /gene="flgH"
                     /locus_tag="SF010_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG8229442.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            14462..15967
                     /gene="pta"
                     /locus_tag="SF010_000486"
     CDS             14462..15967
                     /gene="pta"
                     /locus_tag="SF010_000486"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG8229443.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDSAKLSLDLNTIRIINPLKSEYNQEFASILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            15981..17171
                     /locus_tag="SF010_000487"
     CDS             15981..17171
                     /locus_tag="SF010_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG8229444.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHCTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFKLNKQRILGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(17199..20911)
                     /locus_tag="SF010_000488"
                     /pseudo
     CDS             complement(17199..20911)
                     /locus_tag="SF010_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
BASE COUNT         7031 a         2762 c         3534 g         7584 t
ORIGIN      
        1 taaaatttgt gcaattgata gaaaaaatat gacttggcaa aaattattct ttgcatttaa
       61 ttgcttttaa tgccttagtg gctatttttt ctttcgtgat tttttatttg caagataaac
      121 tttttttaaa tcccaattcg ataaattcta tgaaagggga tttgaattta aacactgtaa
      181 ttagttttac tacaaataca aaccttcagc attatagtgg agagagtgct ttaagtttgc
      241 tttcccaaaa tacaggcatt ttacttgcta tgtttgtttc aagtgcaagt ggatattctg
      301 cttgtatggc tttttgtcgt gctttatgtg gtatgcaaat gggaatttta tgaagatttt
      361 acgcgtatta ttacgcgttt gatgttgcct ttaagtttta ttttggctgt aattttatct
      421 ctgaaggcgt ggtgtaaaat tatcacgcaa attttagcgt gcttacttta gaaaataaat
      481 ttcaaagcat tgccacatgt cctgttgcag ctcttgagtc tataaaacat ttagggacaa
      541 ataggggtgg tttttttggt gctaattcaa gcatgccttt tgaaaatcct gctttactta
      601 caaatttttt gcaaatttta tccatgatgc ttattcctag tgcctgtgtt gtagcttttg
      661 gattgatggt ttatcataga aaagaaagac aaggttttgc tcttatggga aaagaagggg
      721 gagttatttt tggtgcaatg gggattattt ttatcatttc tttgctttta atttatttta
      781 gcgaaaaaat gtcaaatcca aatttggatt ctttgggttt aaatgcaaat ttgggaaatt
      841 tggaaggtaa agaaataaga tttggcacag atggttcgag tttatttagt gctgtaacta
      901 ctgcttttac tgcaggaagc gttaataata tgcacgatag tttaaatcca ttaagtatca
      961 gtgctacttt gctaaatatg atgctaaatg tagctttcgg tggcgaagga gtagggctta
     1021 tgaatatgat tatttatgtg ctcttaaccg tgtttatttg tgcattaatg ataggtagaa
     1081 ctccagaatt cttgggtaaa aaaatagaaa gcgcacaaat gaagcttata gctttggtaa
     1141 ttcttatcca tcctttatta atccttgttt taagtgcatt agctgttgtt tttgcaaaag
     1201 atagtataag caatcctagc tttcatgact tggctcaaat tttgtatgaa tttagttctt
     1261 cggcagcaaa taatggttca ggacttgaag gtttaaaaga tgataattta ttttggaatt
     1321 taagcacagc ttttgctatg ttttgtgggc gttatttggt tttaatagct cagcttgcta
     1381 tagctggatc gcttttggct aaaaatacac aagaaaatac tgcaaattct ttaaaaacag
     1441 ataatttaac ttttatgttt gtgcttgttt gtattatata tatttttgct gcacttactt
     1501 tttttccagt gcttacttta tcaagcgttg cagaatattt atctttatgg cattaaggag
     1561 agtcaatgtc taaaaaacaa aataaactca ttacaaaaga aattttaaat aatgccataa
     1621 aaggagcatt tttaaaattt gatccacgct tgatggtaaa aaatcctgtt atgtttatgg
     1681 tggaagttgg atcgattctt actttgattt taagtatttt tcctacttta tttaatggaa
     1741 attctgatga aagaatttat aacatcttaa tcacttttat tttatttata atcttgcttt
     1801 ttgcaaattt tgcagaaagt attgcagaag gaaggggtaa agcccaagca gctaccttaa
     1861 gacaaagcaa aaaggattct aaagctagac gcataaaaag tgatggcagt gaagaaatgc
     1921 ttaattctag cgagttaaaa ataggtgata tagttttagt taaagcaggt gaacttatac
     1981 ctaatgatgg agaaattata gaaggtgctg caagtgttga tgaatcagct attacaggtg
     2041 aaagtgcacc tgttatgcgt gaagcgggcg gtgatttttc ttctgttaca ggtgggacta
     2101 cggttttaac tgatttttta aagattaaaa ttttagttgg agctggggaa agttttttag
     2161 ataaaatgat caatcttgta gaaggtgctg cgcgtcaaaa aactccaaat gaaattgctc
     2221 ttaatactct tttaattgta cttagtttga gttttttggt ggtggttgta agtttatatc
     2281 cttttatgca atttttaggc gtgagtttgc ctatttcatg gttagtagca ttgcttgtat
     2341 gtcttattcc tacaactata gggggggggc ttttatcagc tataggaata gcaggtatgg
     2401 acagggtaac gcgttttaat gtgatcgcac tttcaggcaa ggctgttgaa agttgtggtg
     2461 atgttgatac tatgatttta gataaaacag gaacgattac ttttggaaac cgtttggcaa
     2521 atgaatttta tgaagttcaa ggtataagta aagaagaaat gattaaagct tgtgttttat
     2581 cctctttaaa agatgaaact ccagaaggta aaagcatagt tgcattggct caaaaaatgg
     2641 gttatgaatt agaaggtaat gatattaaag aatttatcga atttagcgct caaaatagaa
     2701 tgagtggtgt ggatttgcaa gataatataa aaattcgcaa aggtgctttt gatgctataa
     2761 gagcttatat aagcgaaatg aatggaaaaa ttcctagcga tttagaaacg aaggtaatgg
     2821 aaatttcaaa tcttggtggt actcctttgg tagtgtgtaa aaatgaaaaa attttaagag
     2881 tgatttatct aaaggataca gtaaaacaca gtaaaaccag gacttaaaga gcgctttgat
     2941 gagcttagaa aaatgggcat aaaaacttta atgtgtaccg gagataatcc tttaacagca
     3001 gctactatag ccaaagaagc agggcttgat ggatttatag cagaatgcaa gcctgaagat
     3061 aaaatagaag ctattaaaaa agaacaagcc caaggtaaga tagtagccat gacaggagat
     3121 ggaaccaatg atgctccagc tcttgcacaa gctgatgtag gtatagctat gaactcagga
     3181 actcaagcag ccaaagaagc agccaatatg atagatcttg attctaatcc tactaaaatt
     3241 ttagaagtag ttgaaatagg aaaaggtttg cttattacta gaggcagtct tacaactttt
     3301 agtatggcaa atgatattgc taagtatttt gctattttac ctgctatgtt tagtgtggtt
     3361 ttacctcaaa tgcaaatttt aaatattatg catttagcta ccccgcaaag cgctatttta
     3421 tcagtactta tttttaatgc tattattata cctttgctca tacctattgc tatgcgtgga
     3481 gttaaattta agcctatgaa aagcgagcat ttgcttttaa gaaatttaag tatttatggt
     3541 ttgggtggta tgatcgcacc ttttataggg ataaaaaata attgatattc ctatagcttg
     3601 gatacttaga attttaggag tgtgatatgt ttagaacttt gcttagtttt tttgtggtaa
     3661 tgctaatatt gtgtactctt gtttatcctt ttgctttaaa tacagttgca aaatttattt
     3721 ttccttatca atcaagtgga agtttagtag ataaagaagg tcgtccgact ttggatgtaa
     3781 gcaaagcggt aggttcaaag cttttgggtc aagattttaa taaaccttat tttctacatt
     3841 caagaacatc tgtgtcaaat tacaatacaa gcgatacaaa tgaaagcagt gtaagtttag
     3901 gtggatttaa ttatgctatg tcaaatcctg ctttaaaaga gcgtgtgcaa aaagatttgc
     3961 aaaaattttt agatgaaaat ccgcaaatta caaaagaaca aattcctttg gatttattaa
     4021 gtgcttcagg atcaggtctt gatcctcata tcagtcttca agcagcccta gtgcaaattc
     4081 ctaggataag tcaatcttca aaaatcacca aagaagaact agaaaaaatc attcaagaaa
     4141 ataccgagtc taaattttta gggatttttg gggaagaaaa ggttaatgtt ttagctgtta
     4201 atatagctat tgctaaagcc atgaaaaaag aataaacatg caaagacaaa gtcctgaaca
     4261 aattctaaaa aacttgaggt taaagctaag gaagaagaaa aaaacaaact tgcaaaatta
     4321 aaaattttct taggttatgc tgcaggttct ggaaaaactt atgctatgtt aagtgaagct
     4381 agaactttaa gggataatgg agttgatgtt gttttaggct atatagagcc tcacgataga
     4441 cctgaaacaa tggcttaaca caaggttttg aaagtatagc taatcttgaa attccttata
     4501 aaaatatagt attaaaagaa tttgatttag acgctaccct taagagaaag cctgctttgg
     4561 ttttagtaga tgagcttgca cacactaatg ctaaaggctt gcgtaatgaa aagcgttttc
     4621 aagatataga agaacttcta aaagcaggga ttgatgttta tactacttta aatatacaac
     4681 atttagaaag cttaaatgat ttagtcgcta atatcagtaa gatagaagtt aaagagcgta
     4741 ttcctgatcg tatttttgat gaggctgatc aggtttgaac ttgttgatat tgaacctaat
     4801 aagcttttaa aaagaatgca agatggtaaa atttataagg aaaaacaagc taaactagca
     4861 cttgaaaatt tctttcgcca agaaagactt atagctttgc gtgagattgc cttaagaaga
     4921 cttgcttcaa gagtgaattt aagagcaagt gaacaaaggc ttattaatga tgatttagct
     4981 tatcatactg gagagcatat tttagtttgt attaatgctt caaatgcaaa ggttattcgt
     5041 gcagctgcaa gacttgcttt agcttttcat gctaaattga gtgcgcttta tataaaaaat
     5101 cccaatatta aagaagcaaa agccttagaa gaaaatatag aactagctaa aagttttgat
     5161 gctgaaatca ttagcgtata tgatgatgat atagcaagac aaattgcaga gtattcaagc
     5221 cttagcaatg tctctaaaat tgttttaggc aaaaataaag ataaaaaaag tttaaagaag
     5281 agatttttga agctgtcgct aaaaaagcac ccaatattga tttatatctt gtcaatgaaa
     5341 atcaaatttc tactcctaaa atacgaagta aaaaaggttt tgatttttta ggttttttaa
     5401 aaatcacagg agttttgctt ttagcaactt ttatagcttt tgtatttcat aaatttaata
     5461 ctcagccaag taatatagtt atgattttta ttttagcagt ttttgcttct tcttttattt
     5521 ctgacaataa aattttcgcc ttttattctt ctttggtaag tgttttgatt tataattttt
     5581 tctttttaga acctattttt agtcttaaag ttcatgatag tggaaatatt attactttta
     5641 caactatgtt tatagttgga tttttaacag ctgtttttac tagaagatta aaattgcaat
     5701 ctaaagaact cactaaaaga gcttatagaa cagctatttt acttgaaaat agtgaaaatt
     5761 tagcaagagt gaaaagcaaa caagagcttt gggaacaact tggaaatcaa gctttaaaat
     5821 tattaaattt gcctattatt atttatccta taaataaaaa caatatttta tcgaaacctt
     5881 tgcttttttt taacgatgat aagcaaatgt taaaaaattg ttttagtgcc gatgagattg
     5941 ctattgctca atgggttgca acaaataaag aaagagcagg tgtttgtacg aataccctgc
     6001 ctaatgctaa tgctatgtat ttacctatag aagatgggaa aaaactaaag gggttatagg
     6061 tatagtttta aaagaaaaac gtcccttgca agactttcag tatgaaattt taagtgcttt
     6121 acttaatgag gcaggagtta gaacaaggga tatattttta ttataaatcc cttaatttat
     6181 taatctcatc tctaattgca gcagcttttt caaactcaag tgctttagct gcttcaagca
     6241 tttgttttct taactctttg acaagttttg ctctttcgtt agcaggcatt ttttctagtt
     6301 ttttaccttt gcgataaatt tcgcccaaat cctcttcatt tttcaagctc tcttcaatat
     6361 ggcgtttaac tgaagtcggc gtgatattgt gttttttatt ataagccatt tgaagtttgc
     6421 ggcgttcatt ggtggtatcc atagcttctt gcatggattt tgtgattttt ttgcaaaaaa
     6481 gcaaaacctt accattgaca tttctagctg ctcttcccat ggtttggatt aaacttgtag
     6541 cacttcttaa aaagccttcc ttatctgcat ccataatggc aatgagtgaa acttcaggta
     6601 ggtctagtcc ttctctaagt aagttaatgc caattagcat atcaaaagca ccgcttctta
     6661 aacctcttat aatttcattg cgttctatag catcgatatc tgagtgcatg tatttgactt
     6721 ttataccaag ctctaaataa taccttgtaa gctcttcggc aagtttttta gtcagtacag
     6781 ttactaaaac tcgctcgttt ctttgtatga cttttttagc ctcatcaaat aaaatttcaa
     6841 cctgattatc actatctttt aactctatta aaggatcaag cagtcctgta ggacgcatga
     6901 tttgatgaaa gatgttttct ttgctaagtt caagttctaa aggtgcaggt gtggctgaaa
     6961 caaaaagaaa ttgacaattt ttatggataa attcatcaaa cattaaagga cgattatcca
     7021 aggctgaagg taaacgaaaa ccataatcta ccaaagtttg ttttctgctt ctatctcctg
     7081 caaacatacc tctaaattgt ggtaaagata catggctttc atcgactata acaagaaatt
     7141 tcctattttt aatcgcaaaa taatcaaaaa gcgtataagg agtatcacct tctttaagcc
     7201 ctgttaaatg tcttgcataa ttttcaacgc ctttacacat tcctgtgctt gtaagcattt
     7261 caagatcaaa ttcaaccctt tgtttaaggc gttgatattc tacgagttta ttttcatgtt
     7321 caaaataagc aaggcgttcg ttaagttctg cttttatgtc ttttatcgct tgttttagtc
     7381 ttgtttcacc tacactaaac tggcttgtag gatagagtat gaagcgtttt aaatctttac
     7441 cttttttatt ttctaaaaca ttgtaatgat acatagcatc aagctcatcg ccaaaaaatt
     7501 caagtcttac tacttcatct tcataataag ctggataaat atctataata tctccttgaa
     7561 ctctaaaatc tgcacgatca aaaaaattat catttctttt ataacccata tctacaagtt
     7621 tttttaaaag ttctttttgt gaaatttgca tacctagttc aaagattaaa accatgccta
     7681 tgtattcatt tggattacca agtccataat ttgccgaaac actagctatg caaactacat
     7741 cttcataact taaaagagaa gcagtggcac tcagtcttaa acgctctaag tcttcattag
     7801 tggagctgtc tttttctatg aaaacatcag tgcgtggaat ataggcttca ggttgataat
     7861 aatcataata agatataaaa tattccacat gatttttaga aaaaaagcct ttaaattcgc
     7921 tataaagttg tgcacaaagg cttttgttgt gactcatgat aagagtgggc atattaagtt
     7981 ctttaatgac atttgccatg gtaaaggttt ttccacttcc tgtaacgcct agtaaggttt
     8041 gatatttgtt gccttttttt atacttttta ctataccttt tatggcttct tgttgatcag
     8101 gactaggttt aaattcgctg gtaagttcta acatttttct actttatttt tattttttga
     8161 aaaaatttta aaagaaaatg ctttaattaa aaattaattg acaataaaaa cctaaattta
     8221 aatttttttc tgctacaata tcaaataata ttttccataa attacaaatt ttttaagaag
     8281 gcaaaaatat gtttgatgaa aaaataatca atactatgac agataaagta aatgaattaa
     8341 ttgaaaagta taacgaagtt tgtgaagcca atgaggcttt aagaaatgag cttgtaagcg
     8401 ttaaagcaca aaatgaagca aaaagtaatc aaattatgcg tttagaagaa gaacttaaat
     8461 ctcgcaatat agaaagcgaa gatatttata agaaaataga ggctgttctt ggcagataat
     8521 ctaaaacaag tcattgttaa tgttaatgca aaagatttca ttgttaagtg cagtgaagaa
     8581 tttgcaaatt ttttagaaga tgatatcgct ttgatttctg gcggtactaa aaaaatagaa
     8641 cttaaacgct ttgtagatgc gtttgttaaa aaaagttatg aaaattatat tttagaaaga
     8701 gaacttaaga aactaataaa agcaatcaat gaagaactcc cgacaaaatg aataaagctt
     8761 ttactctgct tgagcttgtt tttgtgattt tgattttggg aattttgtca agcttatctt
     8821 tatcttttat caatactaca aaagatgagg ttaaaatttt aaaattaaaa atggactatg
     8881 aaatgctaag ctcagctctt gctttaatgc gtagtcaaat gagacttaaa aatttaaatt
     8941 ttccagaaat tttagataat gcgcaaaaca atcaagccaa agaaaaactc ttttattgtt
     9001 taaatgattg tgattattct ttgcttgata cacctattta ttctgatttt aaatcttgga
     9061 taaaaatagg taaaaatcac tatagatttg cattaaatgc taaagagatg gttgaattta
     9121 tttatgattc taaagaaggt ttgttaaagt gtataggaag ttctagatgc aaagatctga
     9181 tataagatat tatgaacttg caatttgtgg tttgtatttg gataatttaa cttttcatag
     9241 ttttgatgaa atcaaacctt taacacaagt attagtggat ttaaaaacta aaaaaaacct
     9301 taaagctatc gtgcttaaag aatgtcaaaa acctgatttt aaaaccgtag aaattaaaga
     9361 aattacaggg tattttctaa ctcctttgca gtttgaattg gcaaatttta ttgtttatta
     9421 ttatgcttca aaacttggtt ttgttttggg tttttttgaa actagtccta agtatgaatg
     9481 tcacaaaatg ttttttaaag atactcctaa actaagcaat caacaacaaa atgccttaag
     9541 ttttcttcaa aaagaaaata attccttgct ttttgctgat acgggtagtg gcaagactga
     9601 aatttatatt tctttgataa aagagtgttt agaacagggt aagcaagctt tgcttttgat
     9661 gccagaaatc gcacttactc cacaaatgca aaagcgttta gaagtgtatt ttaaggataa
     9721 ttttttcctg tggcattcta aaatttcaaa gaaaaaaaag caagaatatt tagagcgttt
     9781 ttgcaaggga gaagtgcttt tagtagcggg tgcaagatcg gctttgtttt taccttttag
     9841 aaatttagga cttattgtag tagatgaaga acatgataat tcttataagg cttctaacca
     9901 gccttttatc aatgcaagag atttagcact ttttttgggt caaaaaaata atattcaagt
     9961 ggttttaggt tctgcaaccc catctttaac gagcttttac aaacaaaaaa gttttagatt
    10021 aaaaggaact ttttttgaga gtaaaaaaca ttttttatat gatgaaaatg agcttggtat
    10081 aacgcctatg cttttaagtg aattagaaaa aagtttaaaa catcaaaagc aagctatagt
    10141 gtttttacct acaagggcta attttaggca aatcatttgt aaggattgcg gagaaacgat
    10201 aaaatgtcct ttttgttcta ttgctatgag tatgcataaa aagaaaaatg ttttaaaatg
    10261 tcattattgt aattatactt ctttaataga gcaaaattgt ccaagttgca aaggagaaat
    10321 gttagaagct agaaaaatgg ggactgctga acttttagag cttttgcaaa atgctttgcc
    10381 tttagcaaaa atagcaaaat ttgatagcga tgaaatcaca agcgttaaaa agcttaatac
    10441 tattttaaaa aactttaatg aaaataagat cgatatactt attggcactt ctatgcttgc
    10501 taaaggacat gattatcata gtgtggattt gagtgtgatt ttagggcttg atgaatattt
    10561 gttgcgtcct agttttagag cgagtgaaga aactttagct ttagctatgc aagttgcagg
    10621 cagggcaggg cgtaaaggcg aagcaagagt acttttgcaa acaaaaaata gagctttttt
    10681 tgaaaggtat atagagaatt atgatgcttt tttaaaagat gagttagaaa atagaaaaga
    10741 tctttacccc ccatttaaac gccttttaag agttcttata gaagataaag atcaaaaaag
    10801 tgcacaaaaa ctttgtgaaa aatttgcttc tcaatttaga aatatcaaac aggtagaatt
    10861 ggtaggctat ggaatttgtg gagttgaaat gctgtatgga aaatatcgtt tttatttgtt
    10921 gcttagaagt gaaaatcata aagctttagt ggcaattgaa aattatattt tgcaatttaa
    10981 aaatgcaagt gcggatattg atcctattga ttttgtgtaa gtgatatgat tatttatctt
    11041 tgtatatttt ttcaaattct ttataatatt tccaagaatc aataatatga ggatgtgttt
    11101 gttttaaatg atttagttca ttttcaaata tattaaaaaa agtgtaaata agtgatttat
    11161 tttttataaa ataatctatt acatcttttt ctttcatcat ttttgattct gtttcatcta
    11221 tagttatttt aatttgatat aaaaaatcat acaaataatg tttaattgtt gaaaataaaa
    11281 gattgttttg ttccaattgt ttaaaatcat ttttgtcaat atatacaccc atatcattac
    11341 ataggtcgtt ttttataatt tcttgtatta tgtctatttt ttcatgattg atatgttttc
    11401 tgtctaaaat tatgggaatg ctagaagttt tatcaatatt aaaattttta ttatttttag
    11461 gagtattaag ataaaaggtg tttattaata tctttagaat ttgcatagag cgtgatagga
    11521 aaaagatagc gaatataacc tctaaattct ttaattttaa ataaatctaa tttatcttta
    11581 tggggggggg taaaattaaa atttatagca agtaaattca tggtatcgaa ggtctttgat
    11641 tggcggattt cttccatatc aagatagcat acattgtctt tgttaaaata ttttaataaa
    11701 taagagatga taaaaactcc ttgttgtagt tcgtttatat cgattttaat tttatgattt
    11761 tgatgagtaa gatagtcaat ataataacgc caatcataag ttagattaaa ttcaggggga
    11821 tagtttctta aaactttact ccaatctctt ccccagctat gctttaaaag tcccattgga
    11881 tctcgaactc cgcaaataat cttagaatta aaatctaata aagatagata tttatcaaaa
    11941 taaggtagat taatttctga tatattaata gcatattgag caattgtatt atcatttaga
    12001 cacatgtaat taatacaata tctctctttg ctatcaggtg gtaaaaccca ggaggcaaaa
    12061 caagttacat cgcaacattg attaaggtat ctaaaaatgc tgctgctcca acgccatgtg
    12121 gagaaatata gataaattta tagtgtttag gcaggggtaa atttaaatcc caagctaatt
    12181 ctgcgcaatg tcgactagaa tctatttcta taaaattagg attgattaaa ggtggataag
    12241 gatgttttgt tgataaatat ctatccctaa attcgttaga attgagccaa gtgcaaattg
    12301 tttcaatatt ttccaaaaca aaggtaaaaa aatttttcat tattcgaatt ttttaaagct
    12361 tgtaaaagaa tttgagctag ggttggagtt aggttatttt ttatatagag taaaagattt
    12421 tgcatataac ctcttttaat tgtatttaat ttatatataa ttcataaata tttaaatgtc
    12481 atgaaattta aatatattat caaaaataaa ctttaattaa agcaataaaa agttaaaatt
    12541 tgatattaaa atttttcaaa gagtgaagtt atggagtata aaagatttaa aaccagacaa
    12601 atcaaagtag gaaatgtttt aataggcggt gatgcaccca tttcagttca atctatgctt
    12661 tttactaaaa caagagatat agaaggttct ttagaacaaa tcaatcgtct ttattttgca
    12721 ggagcaaata tagtgcgttt ggcgtgcttg gatatggctg atgcaagggc tttaaaagag
    12781 attaaagcta aaagtcctct acctttaatc gtagatattc attttaatca taatttggct
    12841 gtatattgtg ctgaatttat cgatggcgtg cgtataaatc ctggcaatat aggctctaaa
    12901 gaaaatatta aagaagtggt aaaagcatgt aaaaaacggg gtatccctat acgcatcggt
    12961 gtaaatcacg gctccataga aaaacaattt agtgataaat ttggttatgg tgtcgatgcc
    13021 atgctagaaa gtgcgatgta taatatcaag cttttagagg atttagactt ttttgatatt
    13081 aaaatttcca tgaagacttc agatgctcaa aaaactatag aagcttatga gagattaaga
    13141 ccgctttgtg attatccttt tcacttaggg gtaactgaag caggaactaa atttcatagc
    13201 actgtaaaaa gttctatagc tttaggaaat ttacttctta aaggtatagg cgatactatg
    13261 cgtgtttcta tgacgggtga gcttgaagaa gaaattcgtg tagcaagggc gattttacaa
    13321 gatagcggag tgcaaaaaag cggagtaaat atcatctctt gtccaacttg cggtaggatt
    13381 caaagtgatt tgttaagtgc gattaaaatc gtagaggaaa aaactaagca tataaaagaa
    13441 cctttaaata tcagtgtcat gggttgcgtg gtaaatgctt taggtgaagc taagggcgct
    13501 gatgtggcta tagcctttgg gaaaaatcaa ggacttgtta taagacatgg tgaagttgta
    13561 gctaaactga aagaaagtga acttgtagat agatttttag ctgaagttga agatgaggtt
    13621 aaaagtaggg ctgtaaaaga ataaaagcca agaagcaagg tttaaccttg cttttagaat
    13681 ggccatatcg cttctataac tttgctaccc caaggttttc ttgtgcttct atccacttca
    13741 ccttctgttt tataaagaat tttagcatct gctatatatt tactatctat agtattgtct
    13801 tgaccgatgt cataaggacg aataacaccg cttaattgta tgatttgctt ctctccgttg
    13861 attaaaagct ctcttgaacc ttcgataaaa taattaccat ttgataaaat tttaattaca
    13921 cgtgttgaaa ttgtagtatt gaaactttca tttctgcttt gcgagcctgt tcctgtgtag
    13981 ttgtttgaac tattggtttg aaagcctata ttagaataag cattgacttt attaagagca
    14041 ttagctacca ctcctgaact tcctgttaaa gcacctccgc ctaaatttga ggtattagtt
    14101 ctgcttgttg ctttattagc ttgtgtgctt tgagtggtac tttcttgtat aacaactgta
    14161 actaaatcat ttacattcat agctttttta tctgaaaata aaggattatc tcctttgcca
    14221 aaaagcgatc ctggcgcact ttctatatta ttactttgtt ttggtgcaag ttcttctaca
    14281 taagcaggtg gtttcattga aatttgcgga tcaaccgttg cagaacaacc aaaaaacaca
    14341 aacggtaaca cataaaataa aacttttttc attttcgtcc tttaaaatat gaatttttat
    14401 ttttctttgt taaaattaga aaaagcaaag agtgttccac atttataaat tcaaggagaa
    14461 aatgatggca aatctttatt tgatgagatc tagaagtgat gagttaaata ctattattag
    14521 tacaaatttg cttaaaaatt atagcaaaat ttacaaaaat atcgcaattt attgccctgt
    14581 gatatacata catcgcgttc ctgttttgca gggttggttg gaagaattta atatcaatca
    14641 aaccgtaaaa agcgcctatg gttttacctt tagagaggca atggaagaat ttagcaaaga
    14701 tcctcataat ttttttaatg ttattttaga agaatacgaa gagttaaaac gcaaatacga
    14761 ttttgtgctt gtaaatagtt tttgcgaatt tggaatactt gatggatttg atcttagtat
    14821 aaaattagct aaaaatctta atacacctat tgctgctatt atcaatgatg aagataaact
    14881 tatagctcaa aaatatttcg atcatgctct agatggtcgt aattatgttt tgattaatga
    14941 aaattttaat tttgaagaag tgcaaaaact taaagaatat gattttataa ctcctcatcg
    15001 ttttaaatat gaattgatta aacaaagtat aaaaaataaa aaaaccgttg ttttgccaga
    15061 aagtaatgat gagagaattt taaaagctgc tgaaatttta ttgaaaagta aagttgttga
    15121 tcttatttta ttgggtgatg aagaaaaaat caagcaagat agtgctaaat taagtcttga
    15181 tttaaatact atacggatta taaatccact caaatcagaa tataatcaag aatttgcttc
    15241 tattctttat gaagcaagaa aatctaaagg tatgagttta gaagaggcta ggaagctagt
    15301 tcaagataaa acttattttg gaactttact tatacacact ggaaaagctg atgctatggt
    15361 tagtggagca tcaactacta cggctgaaac gattcgccct gcattacagc ttattaaaac
    15421 taaagaaggt attagttccg tttcaggaat tttctttatg ggacttgaag atcaagtttt
    15481 agcttttgct gattgtgctg taaatccaag cccaagtgct gagcaacttg caactagtgc
    15541 ctatgtaagt gctatgactg ctaaatcttt tggacttgaa ccaagaatag ctttgctttc
    15601 ttattctagt ggtgatagcg gtaaaggaga aagcgtagat cttgtaaaag aagcattaaa
    15661 gattgctaaa gaaaaatatc ctgagttgaa tatagatggt cctatgcagt ttgactgcgc
    15721 ttatgatcca aaaactgcag caaagaaaat gccaaattct aagatagcag gtcatgcaaa
    15781 tgtgtatatt tttcctgatc ttaacgcagc aaatatttgt tacaaagcag ttcaaagaac
    15841 tgctaatgct ttagcaatcg gtcctatttt gcaaggtctt aaaaaacctg ttaatgattt
    15901 aagtcgtgga tgtttggtag atgatattgt agataccgta attttaagtg caatacaagc
    15961 tcaatagaaa ggaatgataa atgaaaattt tggttttaaa ttcaggttct tcatcgatta
    16021 aatttaaatt ttttgataat aaaatcgtta aagccagtgg attggtagaa aaaattggag
    16081 agcaaaattc aaaggttgta ttaaaaaata ctttaaataa tgaaagtttt gaaagagaat
    16141 taacaataaa taatcacgaa gaaggcctta gtatagttaa tgagcttttt aaagaatcag
    16201 gaattttagc agatttaaat gcacttgatg gctgcggtca tcgtatagtt catggaggaa
    16261 gaaatttaag cgagcattgt ttagtggatg attatgttct taaagagata gatagggtta
    16321 gtatttttgc tcctttgcat aatcctgcgc atttagcagg tataaaaaca atgatcaaag
    16381 ctgcacctag tgttgctaat gcagctattt ttgatacagc ttttcattgc actatgcctg
    16441 attttgctta tatgtatgct ttgccttatg atttttatga taagcataat attagaagat
    16501 atggttttca tgggacttct catgcttatg ttagttctag agcggcaaaa tttcttcaaa
    16561 aagatcaaaa tgaattaaat gtcatctctg ctcatcttgg aaatggtgca agtgtatgtg
    16621 ctatagaaaa aggtaagagt atggatactt ctatgggctt tactccactt gaaggactta
    16681 ttatgggaac gcgttgtgga gatttagacc ctgctatttt accttttgtt agtcatctta
    16741 agggtttaac tatagaagaa atagatacac tgatgaataa aaaaagtgga gtatatggaa
    16801 tttgcggtta taatgatttt agagatatag aaagagagat agaacaaggt aatgataaag
    16861 cacgcttggc tcttgatatg ttttgttatc gtcttgttaa atatatagga tcctactttg
    16921 ctgtgttgcc aaaaaccgat gctattattt ttacaggtgg tataggagaa aatgatagtt
    16981 tggttcgaca aaaagtatgc gagagattag ctcatcttgg tatcgagtta gattttaaac
    17041 ttaacaaaca aaggattttg ggcgaaagaa tgataaatca tgcaaattct aaagttaaag
    17101 tgcttgttat tcctacagat gaagaattag aaatcgctag aattacagaa gaacttatcg
    17161 gtaaaaatta aattttaaaa actatataaa tctttcattt atatagtttt tagcaaggtt
    17221 atatattcac tttgcttttc atttaaaact ttaaaagtgc ttatcatgta agaaaattca
    17281 tcatcactta aaccataaag ttctttaacc aataaatcat tttttgctct taagatatca
    17341 taagcctttt tagtttttgg aatttcttca ttttttatat taaattcttg ttttagctca
    17401 tcaaaatgac gattttgatc attgtaaagc tgtaaaagca aagcattttt agcgagggtt
    17461 ttataaattt cattgttttg aatttcttca tcacttggtt gaggcagggg aattctttct
    17521 aaataagatt tgcttacatt gatttgcacc atatttctta tgataaaatc aaccactaaa
    17581 gaattaaaca aagctaaaac aaataaaatt ctttcataag gcactatatc catgcaaatt
    17641 acatcatctt ttaaaacata ttgttttgga atgttactat aagtactatc agctccaccg
    17701 caattttttg gcaataaaga agctatcaaa gttctctcat ttgtatcact tgcaattttt
    17761 ctatatccga gtctaaaaaa ttctctatcg tattttatta atttaggatt taattctttc
    17821 ccagtagctt ttttagctct ataaagttct ttacttttta aacgctcatc aaatttagcc
    17881 ttttctaaaa aataagtagc ttggctaaaa tttgcatcaa attgatgtat cattttacct
    17941 tcatataagg gtaaaagtcc ttccctaaac tcttctataa acaaatcttt atcgtttgtc
    18001 atatcaagtt ctcttctaaa atctatataa tcaaaagaca agttttgaaa agcattataa
    18061 gattttctta gaatttctaa agcttgtttg tcttttaact tcattaaggc taggtgagtt
    18121 gggcttagct ttttgatatc ttttaaattt agagttaaaa tttcatcttt gttttttaat
    18181 gagtttatat ctgttttata aaacatcatt ttgattttat gagtgtgatt tgcttgcgtg
    18241 ttttttataa gcataagagc aaatttatac cttgaatcca catcagcaaa tatagcttgt
    18301 ctattttcaa aactataaaa atactctaaa gttttatttt ctaaaatttc ttttcttaaa
    18361 gttaagcttc catcttcaaa catcaaagca ctaggaagta cataagctaa atttccatct
    18421 tgttttaaaa gagaaagatt tttttctaca aaaagacgaa ataaatttcc atctccactg
    18481 cctttgttta aaggataggt ttttttataa tactcgttta aatcatttat atatgctttt
    18541 tgtttttcgt aattttgctt tatataatct tttgctagca aattgtcttg aatttctttt
    18601 ttcttgctag cgattaagct tctataatcg cttttgtatt gtggaaagaa atcgctatca
    18661 ctaaatttag ttttatccca aggtggatta cctataatga tatcaaagcc tttaaagact
    18721 tgattttctg tgatttcagg aaattctaac tcatagttaa agaagttaaa ttctttttga
    18781 tatttgctaa tgatagcttt tgcttgttca ttttggctta aattttgtat atcatcttga
    18841 cttagggctt ttagaatttg taattcttct ttgttgacaa aatgaagcgt gttgatatag
    18901 tttagatata aatttagttt attaagtttt ggtgtgattt cattttgata gatttgtttg
    18961 gattgtttga tttgttcttc gttggtatct tttaggttgt caagtttttc aaatacttct
    19021 tgtaaaattt caaattcttg tgttatggaa tttgtaaaaa ggttgcttga gttttgtttt
    19081 atcaaatctt taaaatcact tagattagaa tttatcaaag cattgccgca ctttatgtgg
    19141 tgttctataa aagaaagtgg ggttgtaaag ataaaactat ctatccaaag gctaagttta
    19201 gtaagctcta tgctaaaagg gtttaaatcc accccataaa taatgcgttt tagtaaaagt
    19261 cgttttaaaa tatcactctc atctacttca tagtcttgca caaaatcttt tatatagttt
    19321 aaaatatttt ctttttcttc ttcgtaaagt tcttttaaat ttgtaaaatg atcaaaatct
    19381 gataaaacaa tgtgtgtaat agcatttaaa actccaacta aaaaatgtcc actaccgcaa
    19441 gcattgtcta gtattttaaa tttcaaaata ttttcattgt ttagtttgtc ttttaaagca
    19501 ctttggatta aaaaattagc tatggattga ggtgtgtaaa agcttgcgct tgcttttctt
    19561 gagttgctag tatttttaag gtaaatttgt ccttttttgt aaaaggtgta tttttctact
    19621 ttttttgatt tttctaaaat tttaaaatca taattatcaa aataacattc tatttctttt
    19681 gatttttctt tataacttac atagtaaata tcttcatttg ctatttcaaa aaaataagaa
    19741 agcaagcctt cataaatcgt gcctaaatgt tctacactta aagttttgta atctctttta
    19801 aagcttagat ttttatcttt aaaatttaat aattggttta aaatgaattt taaatcttta
    19861 tcgttaaaga tttttggcgt gcttaaaaga gcggttttgc tttcatcaaa caaaccgcca
    19921 ttaaaaacag gcatgtcaaa attgcctttg cctttgttgt aaatgttgaa aatattttca
    19981 agttctccaa agccaccact tgagctttca tcttcttgta aattttcaag taaggttcta
    20041 agactgattt tacttttaaa atacttatgt ttttccagta taatttcaaa tttatcttca
    20101 aaataagcaa taaataaaag cctaaagata aaatataaag aattttcata gattagtttt
    20161 aaatccgcct ttgttttatt gtaaattcta gagcctatga attcaaataa agattcattt
    20221 ccattggttc cgtaaatgat agattttaaa tcatcttcta ttttgatttt tgaaagttta
    20281 ttgttttgta gagttatttc taaatgatct tctttttctg tgaaattaaa agcgctaaat
    20341 acactataaa aatacgcaaa agcttcaata ttttgatctt caatgatttt ttctagattg
    20401 atttcgtaaa aaactttgtt tgaattcagt atagaattat cataaaaacg ccaaaatcta
    20461 ccattggtta aaaaaccata atttttctta agattgccta gatatcttag aatttgaaag
    20521 tgagggttgt cttttacttt ttttattgtc tatttctata ttataagctt ttgactctaa
    20581 aatgattgtg aaatcattgc ttgatttttt tgtttctttg tctaaatttt cgtattttgt
    20641 ttttaatttt tcattgctaa aaagtagaaa atcaggtttt tccaattttc cttgtatgat
    20701 tttttcatct tgtcttacaa agcaccactc taaaatttct aatacttttg atataaattc
    20761 atcttcaaat tgatgttcgt tttgttttat aaatttgttt ttgtcgtaaa tttttgtaat
    20821 tttagttaaa atatctctaa aggctttttg atttgcgttg aaattataaa tcttaggaaa
    20881 gtcaatttct aaagaatagc ttgtaaaaag a
//
LOCUS       DARGEX010000016        20615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.016, whole genome shotgun sequence.
ACCESSION   DARGEX010000016 DARGEX010000000
VERSION     DARGEX010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.016"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            274..468
                     /locus_tag="SF010_000489"
     CDS             274..468
                     /locus_tag="SF010_000489"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229445.1"
                     /translation="MTKQEIQKLDTNFLGHRKPLFSLSMVELWERFAFMVFLQELVFS
                     STLPGGWITDNYSGQKRLYF"
     gene            477..953
                     /locus_tag="SF010_000490"
                     /pseudo
     CDS             477..953
                     /locus_tag="SF010_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865666.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1055..1306
                     /locus_tag="SF010_000491"
     CDS             1055..1306
                     /locus_tag="SF010_000491"
                     /inference="COORDINATES: protein motif:HMM:NF013050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229446.1"
                     /translation="MNNFNCFILCGHFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIPT
                     NWFQSFNPIFIIILAPIASYIWIFLEKKIYIFLPLENLL"
     gene            1333..1707
                     /locus_tag="SF010_000492"
     CDS             1333..1707
                     /locus_tag="SF010_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-/tripeptide transporter"
                     /protein_id="HEG8229447.1"
                     /translation="MMMTFASQNLINNNGLPISMAWIIISIFFLTLGELCVSPIGLSI
                     MAKVAPDLIKNQIMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAV
                     IILLILKKPINKILKINIKEKI"
     gene            1704..3494
                     /locus_tag="SF010_000493"
     CDS             1704..3494
                     /locus_tag="SF010_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG8229448.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KVLLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLMNS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDTKASEFRAQSKYYISDSFATIAGFNKNAAYPHYKATKDSFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDVAMPLLDAIARV
                     PLWKEQIDYMHGTGHGVGYFLNVHEGPQVLSYLSPMLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDFPKALVWLEKRTKAIF"
     gene            complement(3615..5420)
                     /gene="mrdA"
                     /locus_tag="SF010_000494"
     CDS             complement(3615..5420)
                     /gene="mrdA"
                     /locus_tag="SF010_000494"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8229449.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLAPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTHY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(5421..5915)
                     /locus_tag="SF010_000495"
     CDS             complement(5421..5915)
                     /locus_tag="SF010_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229450.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLTYVFF
                     KGKI"
     gene            complement(5912..6508)
                     /locus_tag="SF010_000496"
     CDS             complement(5912..6508)
                     /locus_tag="SF010_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG8229451.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(6505..6966)
                     /locus_tag="SF010_000497"
     CDS             complement(6505..6966)
                     /locus_tag="SF010_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG8229452.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNASFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(6948..7463)
                     /locus_tag="SF010_000498"
     CDS             complement(6948..7463)
                     /locus_tag="SF010_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229453.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDIKNKILN
                     IQGVSAWLQDK"
     gene            complement(7454..7942)
                     /locus_tag="SF010_000499"
     CDS             complement(7454..7942)
                     /locus_tag="SF010_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8229454.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKQGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(7948..8775)
                     /locus_tag="SF010_000500"
     CDS             complement(7948..8775)
                     /locus_tag="SF010_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG8229455.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGAKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(8735..9853)
                     /locus_tag="SF010_000501"
     CDS             complement(8735..9853)
                     /locus_tag="SF010_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEG8229456.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(9853..10668)
                     /locus_tag="SF010_000502"
     CDS             complement(9853..10668)
                     /locus_tag="SF010_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG8229457.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQLVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(10659..11903)
                     /gene="cbrR"
                     /locus_tag="SF010_000503"
     CDS             complement(10659..11903)
                     /gene="cbrR"
                     /locus_tag="SF010_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG8229458.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(12009..13532)
                     /locus_tag="SF010_000504"
     CDS             complement(12009..13532)
                     /locus_tag="SF010_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8229459.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLANLKNLSSGEL
                     NRLRLAFIATECNILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(13532..14392)
                     /locus_tag="SF010_000505"
     CDS             complement(13532..14392)
                     /locus_tag="SF010_000505"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG8229460.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSIFLEDRQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            14483..16234
                     /gene="aspS"
                     /locus_tag="SF010_000506"
     CDS             14483..16234
                     /gene="aspS"
                     /locus_tag="SF010_000506"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG8229461.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            16231..16809
                     /locus_tag="SF010_000507"
     CDS             16231..16809
                     /locus_tag="SF010_000507"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG8229462.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            16819..17337
                     /gene="ppa"
                     /locus_tag="SF010_000508"
     CDS             16819..17337
                     /gene="ppa"
                     /locus_tag="SF010_000508"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG8229463.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            17378..17875
                     /gene="msrA"
                     /locus_tag="SF010_000509"
     CDS             17378..17875
                     /gene="msrA"
                     /locus_tag="SF010_000509"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG8229464.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAIIAPKLQ
                     KIQSD"
     gene            complement(18051..18890)
                     /locus_tag="SF010_000510"
     CDS             complement(18051..18890)
                     /locus_tag="SF010_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG8229465.1"
                     /translation="MQNILSSFTQEKNVCVFTNTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(18919..19302)
                     /gene="ruvX"
                     /locus_tag="SF010_000511"
     CDS             complement(18919..19302)
                     /gene="ruvX"
                     /locus_tag="SF010_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG8229466.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(19299..20072)
                     /locus_tag="SF010_000512"
     CDS             complement(19299..20072)
                     /locus_tag="SF010_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG8229467.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(20062..>20615)
                     /locus_tag="SF010_000513"
     CDS             complement(20062..>20615)
                     /locus_tag="SF010_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8229468.1"
                     /translation="PPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPNDSK
                     ERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTIGNS
                     KANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKNTFK
                     ALEQSKDLLKGVDLVYLSEIYGK"
BASE COUNT         7211 a         3457 c         2701 g         7246 t
ORIGIN      
        1 tttaaatggc aactttaaag acttactcaa ttttatacaa aatttagaaa atcttcctat
       61 agctttaaaa attgataaaa taaaactata caatacacag ggtttaaaat taaagcttga
      121 tttaatgttt aaatttgtta atttataata atattaaaat attatatttt taaatattat
      181 tataaaaaaa tatttaaaaa tattgtaatt taattatttt tctattacta ttagttaaaa
      241 tattttaaac ataaaaaaga aaggtattgg gaagtgacta aacaagaaat acaaaaactc
      301 gatacaaatt tcctaggtca tcgcaagcct ttattctctc tatcaatggt agaactttgg
      361 gaaagatttg cttttatggt atttttgcag gagcttgtat ttagcagcac gcttcctgga
      421 ggctggatta ctgataatta ttcagggcaa aaaaggcttt atttctaggt tcttttatta
      481 taactttagg acatattagc atagccttat ctattttaag cacacctatg tttttcctag
      541 ggcttacttt tatcgttatt ggtactggat tttttaaaac taacgcttct gtaacagttg
      601 gaatgttata taaacaaaat gatacaagat gcgatactgg ctatacgatt ttttatatag
      661 gaattaacat tggagcattc attgctcctc ttatatgtgg ttttgttcaa gcaaaatgga
      721 attatcattt aggatttggc ataggaggtt taggtatgct aatctctttg cttattttat
      781 attttaaagc tacccctgaa cttgaagaat ttcataaaaa ttgtacttta aagcaaaact
      841 gggaacaacc atttaaaaaa agtaaaaatt taactcttat actaagtata agcttgttaa
      901 gtattattgg attttttcta atttttatta atcttgcaga tattaatccc ataatactat
      961 caaaaaaact tctaattgta attttactat gtttggtaat ttatttcata tatttttttg
     1021 tttttaaaac cttaaataaa agagaaaaac agcaattaac aattttaatt gttttattct
     1081 ttgcggccac tttttttgga gtacttttga acaaaaacct accgcttata atctttttgc
     1141 gcaagatttt acaaatagaa atatttttga ttggaaaatt ccaacaaact ggtttcaatc
     1201 ttttaatcca atttttatca tcatacttgc tcctatagca agttatattt ggatattttt
     1261 agagaaaaaa atatatattt ttcttccatt ggaaaattta ctttaggaat attatttgcc
     1321 ggtattggtt ttatgatgat gacctttgct tcacaaaatc taataaacaa caatggttta
     1381 ccaatatcca tggcttggat tatcataagt atattctttt taacacttgg ggaactatgc
     1441 gtgtctccta ttggactctc tataatggct aaggttgccc ctgatttaat caaaaatcaa
     1501 atcatgggac tttggtttgt agcaagtgca ttaggcaatg ctttagctgg attcataggt
     1561 ggtaaagcaa gtgaagaaaa tatagcttat ttgccaaatt tattttacca atgtatgtgg
     1621 atattacttg gtgctgttat aattttactt atactcaaaa aacctatcaa taaaatacta
     1681 aaaattaata ttaaggagaa aatatgagta tttacaaaca aagagtatta gaacttagaa
     1741 gattaatgaa agaaaataat attgacgcct atctcatctt aagtgcggat ccgcatttga
     1801 gcgaatattt accagaatat tacaaaaaca gagtctttat cagtggcttt aagggttctg
     1861 ttggaacagt tcttatcacg caagaagagg gctttttgtg ggtagatgga agatattggc
     1921 ttcaagcaca aaaggaatta gaaggtagtg gcatactttt acaaaagcaa gatgctaaaa
     1981 atacttttac caaatggttg gaaaaaaatt taagcgaaga tcaaatttta ggcatcgatt
     2041 ttgcactttt acctttatct ttacaaaaag atttacagat taattgcaag gcaaatttaa
     2101 aacatataga tttgataagt ccactttgga aagatcgtcc cactttacca caagaaaaaa
     2161 tttatgaaca cgaactagaa tactgctctt actcaagaaa agaaaaatta gcattagtgc
     2221 gtcaaaaaat gaaaaattta aatgctactt ctcatttaat ctccagcctt gatgatatag
     2281 cttggcttac aaatttaagg gggaatgatg taaattacaa tcctgtattt ttaagtcatt
     2341 tactaatctt ggaagacaaa gttttgcttt ttgttgatca gaaaaaagta aattcagaac
     2401 ttgaaaaaaa attaaattta gatgggtttt ggcttaaaaa ttatgatgaa atcatcatgg
     2461 agcttgaaaa acttgcaaat acaaatttgc ttattgaacc ttcaaaaatg accgctttac
     2521 tcatgaattc tttagacaaa agcgtaaaaa tcattcaaga aattaatcca agcactcatt
     2581 taaaagcagc taaaaataca aaagaaatag cgcatataca agatgctatg atagaagatg
     2641 gagtggcttt atgtaaattt tttgcttggc ttgaagaagc gatagaaaat aaagaattaa
     2701 taagcgaatt ggacatagat actaaagcga gcgaatttag agcgcaaagc aagtactaca
     2761 taagtgatag ctttgccact atagcaggct ttaacaaaaa cgcagcatat ccacattata
     2821 aagccacaaa agacagtttt gcttatctta aaaaagatgg gcttttactt attgattctg
     2881 gtggacaata taaaaacggc acaacagata ttacacgcgt tgtgcctata ggaaaggcta
     2941 atgcagaaca aattcatgac tataccttgg ttttaaaagc acatattgcc atttctagtg
     3001 caatttttcc aaaagatgta gctatgccct tacttgatgc aatcgcacgc gtacctttat
     3061 ggaaagaaca aattgactat atgcacggca caggacatgg cgtgggatat tttttaaatg
     3121 tccatgaagg tccacaagtt ttatcttatc tatcccctat gcttgaaaaa acaaaagcca
     3181 aagaaggtat gctaacttcc atagagccag gtatttataa agtaggcaaa tggggtataa
     3241 gacttgaaaa tttagttatt cataccaaag tagaaaatcc taaaaataaa gattttggag
     3301 aatttttata ctttaaacct gttactcttt gtccttttga aatatcttgt attgatacaa
     3361 aaatgttaga tgaaaaagaa aaagagtggt taaacaatta ccacaaagaa gtatttgaaa
     3421 aactttctcc taagctaggt gattttccaa aagctctagt ttggcttgaa aaaagaacaa
     3481 aagccatctt ttaagatact tttgttaaca tagataaatt ttccttgtat taaacttata
     3541 atttgtttaa tacaaggttt ttaaaccaat tgctaaaaaa gttttttttg aaaaactcaa
     3601 tttacaacta aaaattattt aaaatatcca agttcaatca ttttttgata aattttagct
     3661 acagttgccc ctgaagtaat atttctccca ccatgctcca aaagaacggt aactacatat
     3721 tttggcttag aataaggagc ataagaagta agccacgcat gagatctagt ataatactca
     3781 aattgttttt catcgaccct atttttatct gtctgtgaaa atcccacaac ctgagcagtt
     3841 cctgtttttg ctgcaacttt cacatcaaga ttatgcaaat aacgataaga ggttcctcct
     3901 tgctcattag caacagcata cattgcatct cttatataag gcaattgact cttttcaaat
     3961 aaagtaaaaa tttctttttt attttcatcc atttgatttt ctatagttgt attattattt
     4021 tctatgcttt ttaaaaaatg aggtataacc tctccacctt ttgcgatttg agccgtatat
     4081 ctagcaattt gcataggtgt tgcaagaaaa ttaccttgac ctatagctgt atttaaagta
     4141 tcaccttgaa accaagattg tctatatctt tgcatcttcc attctttgct tggtaaagtt
     4201 cctacaaatt cactaggtaa atctacccct gttttcgctc caaagccaat gcgagataaa
     4261 gtttcactta tttgatcgat tccaacttgc aaactgccat tataaaaata aacatcacaa
     4321 ctatatttta tcgcatgttt taaatccaca ggtccatggc ctgatcgatt ccaacatcta
     4381 aaaaacctgc ctccaagctc aatgcttcca ttgcaaacat aatgagtcga cgggctaata
     4441 tttttagaat ttaaaaaaga aagccctact cccattttta caacagaacc tggaggataa
     4501 tatccattta taagtttatt tgtaaaagga tgatcaagac tatttgaaag ctcatcccaa
     4561 tccttaaaag aaatccctgt tacaaaagga ttaagatcat attcagggaa actccctgca
     4621 gctaaaatag atccatcatt tacattcata attatagcag ctccagcatt cccttcaaac
     4681 aatgaagtta aataagactg aagctctata tctatcgtaa gttctatatc attagacata
     4741 gcaggagtgt aagaaagctg ttctacttct tgatttaagg cattaacctt ataaacccta
     4801 gttccttttt ctccttgtaa aatatcatta taatagcgtt ctataccgct ttttcccgta
     4861 tagttagaaa gttttgctat ttcattttct tgaacatctt gcaaatttgc cttacctaca
     4921 tacccaataa tatgcgaagc caattttcca aaaggatatt ttctttttac aacaggatct
     4981 atttttattg ttttattaag atttaactct gaataatgcg gaataatctc atcgtagggt
     5041 ataaaatcta caactttaat aaaatcttga ttatagtaag aatcatttct cttataaatt
     5101 tctgctaatt tactagcatt taaatcggga aataaatttg taagttcaga taattcttta
     5161 tctaaaattc ctttatttga ctttttaata cttaaataag gtttaataga aatactaaaa
     5221 cccaaatcat taatagccaa taaagttcca tttctatctg taatttgacc cctaacaggt
     5281 gctaaaaatt cagtttttat ggcattttgt ttggcaagtt cttcataata tacatttgat
     5341 tttatactca aataatacac acgacttaat aaaaatataa aaaacaatag tataaatcca
     5401 acaactaaac gcattctcat ttaaatttta cctttaaaaa acacataagt taaacaacat
     5461 tctataaaaa ctgaaacaat atacgcccat cctaaaattt taattttttc atctccaata
     5521 taagacaata tcatatccaa aaacaaaata atgccgtaag cacaaagcac aaaaacaaca
     5581 gggataaatt taccaatttt taaatttgtc ttaatccaat ctgcacaaag ataataaaaa
     5641 ataaaaaatg ccaaccaaga tgaaaaaata aaaaaattat aagttatatc agtaaaaaat
     5701 aaaaaaaata aagaaaaata ccatctaaaa tcaagctttg aaaaagttct ctctctctct
     5761 tctaataagc aaaacatata acagaaaaaa atcccataaa gtaacggggt atatacaaaa
     5821 gtcgaaccaa gaatctgata aattagaaaa aaaaatccta aaaagacata agctccatta
     5881 aattttgctt tataagcact taaatttctt ctcatttatc aagacctaaa gtttgattga
     5941 taataatatc ttctaaagaa tcaaggccaa atttattcaa atttgaaact aaaatagagt
     6001 ctttaaattc attttttaac ttagcttttt cactttgatt taatttatcg catttggtaa
     6061 aaacttttaa aattttttga tcaggtcgta aaaatctttt caaatagtca tttaaattta
     6121 catcgatctc taaatgagta tgtcttgagt cgattaaatg tataaataac tttatcgagg
     6181 ttcttaattt taaaaattca tctaagtttt gattccatat ttcttttaaa tttttagaaa
     6241 cctttgcata accaaaccct ggtaaatcga taaaattgat attaaatttt tcttcatttc
     6301 ttttgcaagc tacttcgaaa aaatttataa gctgagtttt tccaggagtt gccgaacttt
     6361 tggctaaatt tttttgttta cacaaagaat tgattaaaga actttttccg acattggaac
     6421 gccccaaaaa tgctacttca ctaaaatttg agctcaaatt ctcatcaaat ttcactaaag
     6481 aagtgataaa tttagcacta attatcattt gtctttaagg tcaaatacaa aacgagcagg
     6541 tttttgatcc ttgctctcta ctcgataaat attagctttt ctatcgacta ttattttatc
     6601 accaaaaagt ttttgattgc ttccaagctc atttatataa gcatgaccat taatctcgta
     6661 agtatcttta ataacattat aaataaattt atctccacta cctttataag ttttaccttt
     6721 taaaacaatc ttaaagctag cattttgcat tgcttcataa cgaataggtt tgcgattttt
     6781 atccgtataa ataatcaatt tttcagaatt taaaatatca tcacccctaa ttacttctac
     6841 atttccacta agaatacttt cacccttatt ttcatctgag taaaaattta aagcttttac
     6901 ttcaatttga gttgcccaag ttacacttac acaagccaac aataaaatta tttgtcttgc
     6961 aaccacgcac ttactccttg gatatttaaa attttgtttt ttatatcata gtttaaagta
     7021 tttccgttaa taatacttcc attgatcaga gctttaaaat tagtatttgt gtgtaaaatt
     7081 ttatccttag gttggtattc tacctcttga gaaataattt tgacattatt agaacctata
     7141 taagtaacat ttccttcaaa caaaaccttg ctcatatctt tattgaaaaa ctctaaacga
     7201 ttcgcactaa gattaaaatc taaatttaaa gtaataaagt cattaaattc atctctatct
     7261 gcatatctca cccaagaatt tgccttataa tatgccttaa ttgtactagc attactctca
     7321 taagctttca aatttttagc ctcaatattt ttaaaattta aagcattagt ttgcaaattc
     7381 aaagaatacg gatcttgcaa acttaaaatc gtaaaagtaa ttgtaaaaag agcaattaaa
     7441 attccaaaaa tttttatagc caaagcttat tccattcttc ttttagatga tttttttcta
     7501 ctaaaatttc tatcatttgt gctacagcag ccttaccacc ttgtttgcta agcactatgt
     7561 ctacatttaa atctttatga ccatcttttg gcttaaaact aagtcctaca ctttcaagta
     7621 aagccttatc gttaaaataa tccccaatag ccgcacactg agaaaaatct aaattaagtt
     7681 tttgtaaaat ttcttttgca caagctaact tatccttgat gccttgatat aaaatttcta
     7741 tttttaaatc tttagctctt ttttcaacac aaggacaatt tctacctgta ataatagcaa
     7801 tttttttacc aagctttagc caagcctcaa tagccgctcc atcttttaca tcaaattctt
     7861 taataaattc tccattagaa gtataaataa tttttccatc agttaaacag ccatctacat
     7921 ccaaaaaaat caattctgtc ataatttcta ttctcttaca acaaatgcgc ctgcaaatgc
     7981 accacttgca gcaaaatccc ttgcttcatc ttcacttcta aagcctgtta agaaaacgcg
     8041 atttaaccca tccactgaac ttgtgcgtat agtagagcta taagttctat aagttttata
     8101 tcttgctgct atcgtttgtg ctccagctgg gtttttaaag gctccaattt gaaccatgaa
     8161 atttccacct tcataaattt gtccattatt tgcaatctct ccactatttc catagtttac
     8221 attagaatgt acaatattat tacccgaatt acttgatcca aaccctataa cctcaagcct
     8281 tactggagct gttcctgaag caatcatatc aatttgacta gcagctcctt ttgataaatc
     8341 tataatacga ttatttacaa aaggacctct atcattcaca cgaacggtaa cttgacgatt
     8401 gttatttaga ttggttactt ttaagatggt attcataggt aaagttttat gagccgcggt
     8461 taaagcattt tgattatagg tttcgccatt agaggttttc ttgccgtgaa agcctggccc
     8521 ataccaactc gcaataccat cagcagtttc gcctactgct acgacagtag gataataagt
     8581 tttaccgttg atagtataag gcttcatcgt tcctttagcc cctgaagaac taggactgct
     8641 tttaaaatca tttgaaggat aatacacttg agcattatcc aagctagaaa aaaaactagt
     8701 gcctaaacaa ccactaaaaa ataaagcccc tagactaacg gctgacaact ttagtgtaat
     8761 tgtttttatt tgcattttta ttctccttga ttggtataat taatttttga ttaatgctaa
     8821 gatgattttt tgctatttta ttgaattctc gaatttcatc aacacttata ttataatttt
     8881 ttgctatttt atataaagag tcaccagact taacggtata agttcttgtc ataggtatag
     8941 ttgtatcaac ctttgcaagt ttttctgctt taaaattttt atcaaaaaat gctactttat
     9001 taagtggtat atacatataa taccctttac caggaggcgt aaaattatgt ttaaattgtg
     9061 gattatattt cttaaaagtt gcaagatcca tatttaaatt tttagctatt tcttttaaag
     9121 atgcagaaga aggcacatca acttttgcaa attcattgct taaagcataa ttcattaaag
     9181 acgcatcttt atctagtaaa aaatccctat cattagctaa aaaagcaagc gttaaaatct
     9241 ttcttataaa atttctagtt tctaaagaaa gatatttctt atcagggttc aataaaacac
     9301 ttaaatcatc acttcctgct tgcttgatag cttgtcttag cttgccattt ccgcaattat
     9361 aagctaaaag tgccaaatac catttgccaa attcttcttt taactctttt aaataatttg
     9421 tagcggcata agttgacttg actggatcac gcctttcatc aacataagca tcgattctta
     9481 aacccaaatt tctagctgtt ggttgcataa attgccaaac ccctacagcc ttggcattag
     9541 aaacgctatg agttttcaag cctgattcaa ccatagctag atacaaaatc tcatcaggaa
     9601 cttcctgctg ggctaaaatt tttcttatca taggagtaac ttttgaaaaa ttttgcatac
     9661 tatctattaa agtttgagca tgttttgatt ttatatcttg ttgagtttgc acaaaaatca
     9721 aatcactaat aaaacttgga ttaatatcta aatttcttaa aacattcatt tgtctttcat
     9781 aaaattcagg agtattaatt tgtgcaaaaa gaaaattaaa acatattaaa aaacacaata
     9841 aatttttttt cattaataac ctttaaaaaa taatttttca gaattgttaa aacaaatttc
     9901 tagaagttct tttcttgata aattcaatac ttcacacatt ttgtttgcta ccaattgagt
     9961 taacaaaggt tcatttcttt taccgcgata aggctctgga gtaagatatg gagcatcagt
    10021 ttcaagtagt agtctatctt ttggaatttt aggtaaaatt tcaactaatt tcttagcatt
    10081 tttaaaagtt aaaactcccc caataccaaa ataaaatcca tcttcaaaaa gagttagcaa
    10141 atgttcgctt gcattaaagc agtgtaaaac tcctcctaca agatccttag aatacccatg
    10201 taaaatctca taagtatcat gatttgcttc tcttgagtga atgataacag gttttttaaa
    10261 ttcaatagca agttcaagct gtgcgataaa aatctttttt tgattttctt tttctttttg
    10321 aatttcttca gcaagatcac ttttaaaacg gaaataatca agcccacatt cacctacagc
    10381 tacacacttt tcatcgcata aatactgcct taaaattttc tcatcataat tatcaatttc
    10441 ataaggatgc acccctgctg caaaaaaaat atttttatat ttatgagcaa ttgtagctgc
    10501 ataaggcaag tcttttatat cagcaccagg tatgatgatt ttctctatac catttttaaa
    10561 agcacgattt aaagtttcat ctaaatcatc tttaaatgct tcactgtcta gatggcaatg
    10621 cgtatcaaca atccttaaac catcttgaaa atcaagattt aagaacatac ttcaactcta
    10681 tctttgccgt tatcttttgc ttgagacaat attttacttg ctttatcaac caaagaatca
    10741 atcttatctc cactttttcc aaaaaccacg cctatagaag ctgtaaaaaa gacttcatct
    10801 aaattaacta aaacaccagc tttttttata tttactcgta tacgagaaaa gattttaatc
    10861 gctctttctt gggatatatt tttaagtaaa atacaaattt tttctgcact atatctacct
    10921 acaagatctc ttcctttagt ttcattaact atttcattgg cgcagatttt aattacttca
    10981 tcgccaactt cacggccgta ttcatcgtta atcatttgaa gattatctat atctaagaaa
    11041 gcaaaagcaa attcctcgtc ttttgttgct atttcgttaa aataatcatc tattccatcg
    11101 attaaagcat tataattttt aaccccagat acaagatcta aaacattata agtgcttaaa
    11161 aattttttat catccatgta agataaacaa cgatctaagc gacaattaaa actttctttg
    11221 cttaaaggct taaacaaata ctcattaact ccatttttaa aagaattcgc ttcaaatgaa
    11281 tcattatgat cccccaaaag aatcacacct aattcatcat cactaaaacg ttctcttact
    11341 tgagtcaaaa gctcaaaacc gctaattact ggcatattga catctgctat aataagctta
    11401 acatcattat tatcatttaa ataactcatt gcttcttcac catgagccgc agctaaaaca
    11461 ttaaattgtc tttgagtaag tattttttta atttcattac gttcaggtag cttgctcata
    11521 gctacaatca ctttagtttt tgcatattga ttaagtttta caatagaact aataatctca
    11581 tcaatgcaag tttcactttc tttaaaaata taatctaata tatctttatc cataaatttt
    11641 tctttagtag ccttatcacc actagccgta agaacaatag caggaatttt cttttctata
    11701 acataatcca caacttcacc atttggggca tctggcaagc ataaatccac aaaagctaaa
    11761 aaataatcat tattcattaa ctccttagct tcagcaaaac caaaagcaat atctacctca
    11821 taatctaaag tcatttgaat ttttttagcc aaaagtttgc cgagcatttt attgtcatca
    11881 ataattaaaa ttttcttatt catagtgtgt aaaatacctt tatatctaaa attttttatt
    11941 atatttgttt caaaagaaag gaaattttta tagttatata ttttaacata gcaaaataaa
    12001 aaatccgctt aattcttaaa taaggtctta gcaaattcga tcgcttcatc actaacaagc
    12061 tctccactta ccatcctagc aagttcttta attctttctt cttgatcaag cttttttacc
    12121 ttactttctt caccattttt ttcaactaaa aaatgattat gtgccttaga ggaaagttga
    12181 ggcaaatgag aaatagcaaa aatttgataa aacttagaaa gttcctctaa aaccttagct
    12241 atactcatag cctcttttcc gcttaaattt gcatcaattt catctaaaaa taatatccct
    12301 ttgcctgcat ttaaaatatt acattctgta gctataaaag caagtcttaa gcgatttaat
    12361 tcacccgaac ttaaattttt taaattagct aaattaatat ctagcattat ctcatctttg
    12421 cctaaaattg aaattttttc attttcttta agcgtcaaac ttgcatcttt catataaaga
    12481 tctttaagat aattatttaa acatttttct aattttttaa ggtttttctt tcttgtttga
    12541 gttaaaattt gtgctttttc ttctaatttt tgttttaatt cttgaaattt tttttcaagt
    12601 tctttttttt caaaacttaa attttcataa tgctctagct catatttttt ttgttttaaa
    12661 acttctaaag cattttctat gctttcataa cgcttgataa gataggataa attttcaatg
    12721 cgatctaaaa gcgcctccac atcaaaatcc aaatcttcca ttttttgatt ttcgcaaatc
    12781 acacgcaatt catttaaaca ttcactaaaa aaactcgcat caacttcgct taaatttaaa
    12841 gcttcaataa caactttttc aagctcaaaa atacgctctg ccttactcca agcttcttct
    12901 aatttatctt ttttagaaag ctttttttta agtattaaaa gctcttcata ctcacctatt
    12961 ttaggattaa tgcttgaaat tttttcaatt tgtgctctag ctagttcttt taattcttct
    13021 actttttttt cttcttctaa aattgcatta agctcattag aaatttgact ataagcatta
    13081 aaatcttttt taaaatcttc taaaaaggaa acaaaatttg tattttcttg catctccaag
    13141 gcatctaaga gatttaaaaa tttttcattt ccaaattcgt tattttcctt tgcgcttaaa
    13201 tacttaataa aagttttact taaattttgc aaactttttt tcgctatgct ttgattgtta
    13261 ataaaatatt ttgtgttttt ttcttttaag agcttaaaaa cattctcctc ttcactttct
    13321 ataccaaaac tttctaaatc caacttatca tctacttcta tttcgacaat tttagcctca
    13381 ctttcactca aagaaaatgc ggataaaatt cctttaaaca agaccgattt tccagctcca
    13441 cttaggcctg taaaaacggt aagcccttta gaaatttcaa gctcagcctt tttaaaacca
    13501 agattttctt tcataaaaat tctatttatc atcaatttcc ccagtgtaat ttttctttta
    13561 aaatttgaaa ataatcccta ttttttgggt gaattaaagc cacattttta tcacttaaac
    13621 ccacttttat acttttaaaa tcattcattt tataattttc ttgcccatca atgcaaagca
    13681 tgcaatcctt tgccataatc tctatttcaa aaccttttgg caagacaata gggcgttgtg
    13741 ttaaagaatg agaacaaaca ggagttaaga taaaagcttg agctaaagta taaactatgg
    13801 gtccatttgc acttaaatta taagctgttg aacccgcagg agttgcaaca ataagcccat
    13861 ctccaaaata ttcattaaat ttcttttctt ttctaaaaac ttctatatga gccatagaag
    13921 cttgattgtt tttactgata accacatcat taaaagccaa tttttctaaa atttttcctt
    13981 gcctatcttc taaaaaaata cttaacaaat aaggcttttc tattctaaat tctccttgaa
    14041 aaaaagcttg aaaaaaattt tcagcttcat caactttaaa atctgttaaa aaacctaaat
    14101 gtccagcatg aattcctaaa actgctttat catattcaca agctttacgg cataaagaaa
    14161 tcaaagttcc atctccacct aaagaaataa caaaatcgga tattttaaac aaatcatcca
    14221 atccatactt tggcaaatct aaaatttcag aactttcttt aagcaataca agttcaactt
    14281 tatatataga taaaatcgat tgaagtttta aaatttcctt atctaaactc acattgggtc
    14341 gcgtaacaag tccaattttt ttaatatttt tataatctat tttattttgc ataaaaaatt
    14401 atatcaaatc ttagcaaagc aaaagaataa aaatactata attttgctca ttatcttaaa
    14461 aaatcttttt caaggaataa atttgcgaag tcattataat acagacttgg gaatttccca
    14521 tgttggtcaa agcgttaaac tttgcggttg ggtaaatagc taccgcgatc atggtggagt
    14581 tatttttata gatttaagag atagaagcgg tattatccaa cttgtttgcg atccaaatga
    14641 tagtaaagaa gctcatgaaa tcgcttccaa tgcaagaaat gaatttgtac ttattacaga
    14701 aggtactatt cgtccgcgtg gcgaaggact tgtaaatcct aagttaaaaa caggagaaat
    14761 cgaagtagtt gtttctaaac ttaccataga aaatgaaagt gccgtacctc cttttgctat
    14821 cgctgatgaa agtgtaaatg aagaattacg cttaaaatat cgctttttag atttaagaaa
    14881 tcctaaactt tatgaaaatt ttgccttgcg ttctaaagct tgtatagcag ctagaaattc
    14941 tttggcaaat atgggatttt tagaagttga aacccctatt cttaccaaag ctactcccga
    15001 aggcgcaaga gattatctcg tgccttctcg tgtgcatcag ggtgaatttt atgctcttcc
    15061 acaaagccct cagcttttca aacaactttt aatgtgtagc ggttttgatc gttattttca
    15121 aattgcaaaa tgttttagag atgaagattt aagagctgat cgccaacctg aattcacaca
    15181 aattgatgtt gaaatgagct tttgcgaaca aaaagatgtg atcaaggtag ctgaaacttt
    15241 tttaaaagat attttcaaag cttgcggcaa agaaattcaa acccctttta gacaaatgca
    15301 atacaaagac gctatggaaa attatggctc tgataagccg gatttaagat ttgatcttaa
    15361 atttattgat gtgattgata ttttcactaa gtcaaataat gaaatttttg caaatattgc
    15421 caaagataca aagaaaaatc gcatcaaagc catacgcgtt ccaaaaggcg atactatttt
    15481 ttcaaaaaga caaatgcaaa gatttgaaga atttgtgcgt aaatttggcg cccaaggctt
    15541 agctttcata caagttaaaa aagatgggct taaaggtcca ctttgtaaat tctttagcga
    15601 agaagattta aatgagctaa gcaaacgctg tgagcttgaa gtaggagatg tggtattttt
    15661 cggtgcagga gctaaaaaaa ccgtgcttga ttatatggga agatttagaa ttttcttagc
    15721 caacgagtta aaacttatag atccaaatgc cttggaattc ttatgggttg ttgattttcc
    15781 tatgtttgag caaaatgatg acggaagtta ttctgcgatg caccatcctt ttaccatgcc
    15841 aaaaaatatt gatgagactg atttagaaga aatttcatct attgcttatg atgtagtgtt
    15901 aaatggcgtt gagctaggtg gaggtagtat aagaatccat aaaaatgata ttcaacaaaa
    15961 agtatttaaa cttttaaata tcgatgaaga acaacaaaaa gaaaaatttg gcttcttgct
    16021 tgatgcttta agttttggtg ctccaccaca tggaggtatc gctataggac ttgatagact
    16081 catcatgcta gttacaggag caaacaacat aagagaggtt atagcctttc caaaaaccca
    16141 aagagcgcaa tgcttaatga cagatgcacc atcgcctgct agcaatgaag caatgagaga
    16201 attaggaatc aaattaaggg agaatataaa atgaaagaat tgtttttaat cataggtgca
    16261 ccaggtagtg gaaaaactac cgatgctagt ttaatcgcac aagcagatgc gacaaatatt
    16321 acacactatt caacaggaga tcttttaaga gctgaagtag caagtgggag tgagcttgga
    16381 aaaactatag atagttttat ctccaaaggc aatcttgttc ctttagatgt tgttataaat
    16441 actatagttt gtgctctaaa agctgctcca actaaaacta tcatcattga tggctatcca
    16501 agaagcgtag agcaaatgat ggaatttgat aaggttttaa gtgagcaaaa tgaaatttgt
    16561 cttaaaggcg tcatagaagt aagagtaagc gaagaagttg ccaaagaaag agttttaggc
    16621 agaaatcgtg gcgcagatga taatgaagaa gtgttttaca atagaatgaa agtttataca
    16681 gaacctttaa atgaaatttt agatttttat caaaagaaaa aacttcattt tattatcgat
    16741 ggagagcgcg ctatcgaacc tatcgttgca gacatgaaag aactgattaa aaaaattcaa
    16801 agtatataag gagaaaaaat gaatttaaac aaaatcaaaa tcggagatat tccaaataaa
    16861 atcaatgccg taatcgaaat tccatacggc tcaaatatca aatacgaaat cgataaagat
    16921 agtggtgcta tcatggtaga tcgcgttatg gctagtgcga tgttttaccc agcaaactat
    16981 ggttttattg ccaatacttt ggctgatgat ggtgatcctg tggatatttt agtgcttaat
    17041 gaatatccta tccaagctgg agccgtgatt ccttgccgct taatcggtgt tttaatcatg
    17101 gaagatgaaa gcggaatgga tgaaaaactt cttgcggttc caaattcaaa aatagatgca
    17161 agatatgaca atataaaaac ttacacagat ttaccacaag caactttaaa taaaatcaaa
    17221 aatttctttg aaacttataa aattttagaa ccaaataaat gggttaaagt gcaagatttc
    17281 aaagatgaaa aagctgcaat tgaaatttta gaaaaagcaa tcaaaaacta caaataatcc
    17341 tagcccttca aagggctaaa ctcaaggaaa actcgcaatg aaaaatatcg ttttaggtgg
    17401 tggttgtttt tggtgtgttg aagccgtatt tgaacgccta aaaggtgtaa tcgatactga
    17461 agttggatat agcggaggaa atccaaatcc tagctatgaa agcgtgtgta atggtgatgg
    17521 caacatagaa gttgtcaaaa taaattacga tgaaaaacaa atctctcttc ttgaaatctt
    17581 aacactcttt tttaaaattc atgatccaac aagtatagat aaacaaggtg gagatattgg
    17641 tatacaatat cgctcaataa tcttttacga aaatgaagaa gataaaattt tagctcaaaa
    17701 tttcatcgaa gaacagcaaa aaatatttag caaaaaaata gttactaaaa tttcaagatt
    17761 gcaaacttat tacaaagctg aaaactatca tcaacattat tttataaata atcccaatca
    17821 aggatattgt caagctataa tagctccaaa actgcaaaaa atacaatcag actaatttca
    17881 tctttttaag gttaaaaaaa attcaacttt attcacagcc ttttcacgct gtgattttct
    17941 tttcaaagta cttaaaaata gaactttaag ctttaaaata aagaaaaaat tatttattgt
    18001 tttttaagtt tttttatgaa tttgtattta aatgtgaata attttattaa ttaacataat
    18061 ttcctaagtt tagctatgaa aaatccatca tagtctaagc ttggtaaaat ccgtctgcat
    18121 tttgaaattt cagcaaattc ttcactttgc cctgctttag cctcaacatt ttccaaatca
    18181 atatctaaaa gctctaattt aaactcactt tttaaagcat tctctatcac ttcttcattt
    18241 tcttctttgg taaaggtgca agtactatat acaagctctc cacctatttt taatgccttt
    18301 aaagcagaat gtagaagttt tttttgagtt tttgcaatat ttttgatttc tttataactt
    18361 ttttccaaat caaaacctat tttagcaaaa gtcgaacaag gtgcatcaag taagatttta
    18421 tcaaatttta aaggacataa attgcctata tttttaccat ctttcataaa aactttagca
    18481 ttcacgccgt aatttttaag atttttttgc aaaataaaaa atctatccct actcatctca
    18541 ttgcaagcta aataacctgt attttgcata aaatttgcaa gattgatact tttaccaccc
    18601 ggagctgcac acatatcaag aaccctttgc cctgctttga cttctaaatt taaagcacac
    18661 aaataagaag aataattttg tatataaaag tgcgcctcat taaaagcttt catagaactt
    18721 aagatagcct tatctttggc atcaaacaaa taacaataag cattgatctt tttaaatttt
    18781 aatttttgtt ttaaaaattc tttttctaat tcttcaatgc taatttttaa agtatttgta
    18841 aatacacaaa catttttttc ttgagtaaaa gaagataaaa tattttgcat ttcatctttg
    18901 gtataaagtt tttctattct agagagcaaa ataatccttt atcatgataa aagcggataa
    18961 agagtctaat ttaccatctt ttttgcgtgt attggctacg ccgtatccta aagcttcttt
    19021 gcttgttccg ctttcatcta caaagcaaat ttctttatca aattcaagca aagaaacaaa
    19081 atgcttaatg cgtcttgtca tttcttcttc acttgatcca cccttaggaa tgcctacaat
    19141 aagtaaagaa atttcatgta ttttaagtaa atttttgatt tcattagcgg cttgattgcg
    19201 attttttctt aaaactgcat ctaaaggcaa agcgatcttt ttatctatgc aaagcgctac
    19261 acctatgcgt tttaaaccta catctaaagc caaagctctc atgctaaaac ccttataaaa
    19321 agcccttcta tggaaatttt tccctcaagt tcatattcat aaactttttg tccataaatt
    19381 tttaaagcct catcaacact cacacctttt ttacaaaact ctaaaaattc atcttgattt
    19441 atatctatac ttgcaaactc acttacaaat tctttaaaat cacaaattaa ctttgcttta
    19501 ttttccttta aaagaaaatt agttcctgtg ctttctccta gtctttgtgg taaaacatat
    19561 aaaggtttat tgagttctaa agcaagtttt gcactctgca tagaaccact ttttatatct
    19621 gcttgtgcaa ccacaacggc cttacttaaa gcaataacca aacgatttct tagtaaaaaa
    19681 tcataatttt ttggcaaata atcatcttcg tattcactta aagctaaagc attttcataa
    19741 atttgtttaa tgattttttc attagttctt ggataaattt gatctaaacc attggcaaaa
    19801 atacctatag tatttggcat agctgccata cttgcggtga tatccacacc caaagcaccg
    19861 ccacttacca cgcaaagatg agcattttta agcatactcg ctaaggaaaa aacacaattt
    19921 ttcgtataaa cactcatacg ccttgaacct ataatagcga ttttatcttg ttttaataaa
    19981 gataaatttc ctttatagtg taatttttta ggaggctttt ttaaatcttg aaaaagctct
    20041 aaaaattcat caggcaaaat ttcacttgcc ataaatttca ctcaaataca caagatcaac
    20101 gccttttaac aaatccttac tttgctctaa agctttaaaa gtatttttcc taggatgtcc
    20161 tatggctata acaaaacctt ttttttgtgc aagttttacc gcactttcaa gttgtttttt
    20221 aacataatta acatcatctt cattatccaa aaacacatct ctttgtatat aaggcatact
    20281 gagttcttta gcgattttat ttgccttaga atttcctata gttttagaat ctacaaaaaa
    20341 tatattttga ttttttaaag cctcgtaaag ctttctcata gcttcttcat tgcttgtaaa
    20401 taaacttcct gtgtgattat tgatatatct taaatcctta aaatcttttt taatttgctt
    20461 gattttttta aaaattcttt ctttgctatc atttggattt aaagtatcaa tttctggttt
    20521 attataatta attgctgcta aaggtaaatg caccatataa aaatcaaatt ttaaagcaag
    20581 ttttggcgtt tcactatggt ttttatctgg cggaa
//
LOCUS       DARGEX010000017        20467 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.017, whole genome shotgun sequence.
ACCESSION   DARGEX010000017 DARGEX010000000
VERSION     DARGEX010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20467
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.017"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1064
                     /locus_tag="SF010_000514"
     CDS             <1..1064
                     /locus_tag="SF010_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG8229469.1"
                     /translation="DLFKKNLKDYSHVFNIKVDLSKIEKNEQFPFFQISCEGVQTKYH
                     FLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVL
                     FSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICA
                     FCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECI
                     LRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGA
                     CFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGD
                     YDFFSFIIMPKFLEEKVKI"
     gene            1061..2422
                     /locus_tag="SF010_000515"
     CDS             1061..2422
                     /locus_tag="SF010_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG8229470.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            2419..2838
                     /locus_tag="SF010_000516"
     CDS             2419..2838
                     /locus_tag="SF010_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229471.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(2839..3186)
                     /locus_tag="SF010_000517"
     CDS             complement(2839..3186)
                     /locus_tag="SF010_000517"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG8229472.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(3186..3722)
                     /gene="fliL"
                     /locus_tag="SF010_000518"
     CDS             complement(3186..3722)
                     /gene="fliL"
                     /locus_tag="SF010_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG8229473.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            3825..5213
                     /gene="pgmL"
                     /locus_tag="SF010_000519"
     CDS             3825..5213
                     /gene="pgmL"
                     /locus_tag="SF010_000519"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG8229474.1"
                     /translation="MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNR
                     GCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANV
                     MITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLY
                     VKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAP
                     DPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPN
                     PRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRY
                     FGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKE
                     IEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVF
                     TLFNDIKARFKN"
     gene            5260..5637
                     /locus_tag="SF010_000520"
     CDS             5260..5637
                     /locus_tag="SF010_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEG8229475.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(5669..5995)
                     /gene="rsfS"
                     /locus_tag="SF010_000521"
     CDS             complement(5669..5995)
                     /gene="rsfS"
                     /locus_tag="SF010_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG8229476.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(6023..6568)
                     /gene="nadD"
                     /locus_tag="SF010_000522"
     CDS             complement(6023..6568)
                     /gene="nadD"
                     /locus_tag="SF010_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG8229477.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALGKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            6628..7626
                     /gene="gap"
                     /locus_tag="SF010_000523"
     CDS             6628..7626
                     /gene="gap"
                     /locus_tag="SF010_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG8229478.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGVQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            7629..8831
                     /locus_tag="SF010_000524"
     CDS             7629..8831
                     /locus_tag="SF010_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG8229479.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            8828..9499
                     /locus_tag="SF010_000525"
     CDS             8828..9499
                     /locus_tag="SF010_000525"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG8229480.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            9503..10327
                     /gene="fabI"
                     /locus_tag="SF010_000526"
     CDS             9503..10327
                     /gene="fabI"
                     /locus_tag="SF010_000526"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG8229481.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            10331..11824
                     /locus_tag="SF010_000527"
     CDS             10331..11824
                     /locus_tag="SF010_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8229482.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILAKHLS
                     LGNEIPVLAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILDKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANISSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(11821..13674)
                     /gene="feoB"
                     /locus_tag="SF010_000528"
     CDS             complement(11821..13674)
                     /gene="feoB"
                     /locus_tag="SF010_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEG8229483.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKSPEKEDLLYFINQLSKKIITHKKEERNLTKKIDA
                     LLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASAL
                     ADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPL
                     ITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNY
                     LFGIYILGAILGLFAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLIWFMVYNKAKMYL
                     KKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLEL
                     DWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILF
                     VMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(13671..13895)
                     /locus_tag="SF010_000529"
     CDS             complement(13671..13895)
                     /locus_tag="SF010_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG8229484.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(13977..15317)
                     /locus_tag="SF010_000530"
     CDS             complement(13977..15317)
                     /locus_tag="SF010_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEG8229485.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDSIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASRVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLESYENLKREEVLEFAKKISYKKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNTKANKILDQIINLENLNHFSF"
     gene            complement(15326..16693)
                     /locus_tag="SF010_000531"
     CDS             complement(15326..16693)
                     /locus_tag="SF010_000531"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8229486.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            complement(16703..17867)
                     /locus_tag="SF010_000532"
                     /pseudo
     CDS             complement(16703..17867)
                     /locus_tag="SF010_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(17880..19320)
                     /gene="dcuC"
                     /locus_tag="SF010_000533"
                     /pseudo
     CDS             complement(17880..19320)
                     /gene="dcuC"
                     /locus_tag="SF010_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(19324..19686)
                     /locus_tag="SF010_000534"
     CDS             complement(19324..19686)
                     /locus_tag="SF010_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8229487.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            19854..>20467
                     /locus_tag="SF010_000535"
     CDS             19854..>20467
                     /locus_tag="SF010_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEG8229488.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTVFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKIS"
BASE COUNT         6958 a         2952 c         3543 g         7014 t
ORIGIN      
        1 atgatttatt taaaaaaaac ctaaaagatt attctcatgt ttttaatatt aaagttgatt
       61 taagtaaaat tgaaaaaaat gagcaatttc ctttttttca aatttcttgc gaaggagtac
      121 aaactaaata tcatttttta acatggaatg atattgttaa gaaaaattgg tcagaaaatt
      181 ataaagatgc tttggcagat tgttatagtt tttttagaat ttatactatc acagggcttt
      241 ttatcaaatt tggcaaagag tcgatttatc aacttatcac aggttattat cctttttttt
      301 atgtgttatt ttctttacta ttttctttgg ttttggcttt tggaagtttt gcttttttgc
      361 aaaattatat gcatttttct ttagctatta tcataggatg ttttttagga tttttactaa
      421 atcatttttt atttaaatta ggtaagaaat tagctgtatt ttggatagca agaatttgtg
      481 ctttttgtgc tacttggcaa gataaaaaaa caggcactat gcaagaaaga atcaagcttt
      541 ttgcgaatac catagtagat aagctaaaac aaaatgaaaa taaacaagat tatgaacttg
      601 ttttagtagc acatagtgtt ggaactatag tttgtataga agttttggag tgtattttaa
      661 gacaaaattt agatttatct ttacttcgta aattaaaaat tcttacttta ggagaatgca
      721 ttcctttagt gagttatcaa aaaaaagcgg atgaatttag aaagaagctt gaatttgttt
      781 caaggtttga tttaaaatgg tatgattaca catcgattat tgatggagca tgttttcctc
      841 aagtggattt tttccgcacg agtggtgtaa atgctaaatt tacaccccca tttttaagtg
      901 ctaaatttca cactttatat gaaaaacatg agtataaaaa aataaaaaga gataaaaaca
      961 aagcgcactt tttatatctt tatagtatta gtgttaaagg tgattatgat tttttttctt
     1021 tcatcataat gcctaaattt ttagaagaaa aggtaaaaat atgagtgaat gccccttttt
     1081 tccaaaacct tataaaaata aagcttctac gcttttaact tttttgttaa agcgtagatc
     1141 ttggcttgac gggctttatg agcgtagtta taaaatgcaa acaggctatg tgaagatgcc
     1201 aaattttgat ctttatgtca taaatgacac taaagaagtt aaaagaatga tggttgatga
     1261 ggttagagaa tttcctaaaa gtgcattttt acatgagctt ttaagtccgc ttttagggga
     1321 gagtattttt actacaaatg gtgaagtttg gaaaaaacaa agagagcttt tgcgtccaag
     1381 ttttgaaatg actcgtatca ataaagtgtt taatcttatg agtgaagctg tggcagatat
     1441 gatggatcgt tttagcaagt atccaaatca tgctgttatc gaagtagatg aagctatgac
     1501 ttttattacc gctgatgtga tttttcgcac cattatgtct tcaaaactcg atgaggaaaa
     1561 aggtaaaaaa atcttaaacg catttgtgac ttttcaagag caaagcgtgc atacagccat
     1621 gcgtcgtatg tttcgttttc caaaatggct ttcttatgtg ttaggagatt gtaagcgtgc
     1681 taaggccgga gatgtgatca gacaggtttt aagtgatatc ataaaaccaa gatatgatat
     1741 ggcagataat gcagaatttg aagatatttt aggatctttg cttttagtag tggatgctga
     1801 tacaaataag cgtttttctt ttgaggaaat tttagatcaa gtggctatgc tttttttagc
     1861 aggacatgaa accacagcaa gttctttgac atggacgctt tatttgctta gtctttatcc
     1921 taaggagcaa gaaaaagctt acgaggagat tactcaggtt ttacagggtg gagtcattga
     1981 aatttcgcat ctaagacagt ttaaatactt aacaaatatt tttaaagaat ctttaagact
     2041 ttatcctcct gttgggtttt ttgcaagaga ggcaaaaaaa gatactcaag ttagagataa
     2101 gcttattaaa aaaggttctg gggtggtgat tgctccttgg ctgatacaca gacatgaaga
     2161 attttggaca aatccgcatg gatttaatcc ttctcgtttt gaaggagagt acaaaaaaga
     2221 tgcttatttg ccttttgggg taggggaaag aatttgtata ggacaaggtt ttgctatgca
     2281 agaagcgatt ttgattttgg ctaatatttt aaaaacttac aaactagaac ttgaagaagg
     2341 ttttgtacct gatgtagtag ggcgtttaac agtgcgttcg gctaatggta tgaggataaa
     2401 atttagcaaa agaaagctat gaaaagagtt agaactaaaa ttcgcgccaa ttttcgtcgt
     2461 cgtgtaaaac gcactttaaa aggaagctta aaagaaaaat tagcagggac tattctgctt
     2521 tgtgcaatag tacctttagc agttttagga tatcttttta tcgtgattat aggaattttt
     2581 tttaataccg cacgagcaag acagggtgtt agagccttag atcattttgt aaatgcaagc
     2641 ttgtttaatg gctatgcttg ggagagcgtt tcttctcatg cgtggcgtga aagaaatcgc
     2701 aaaaaatggg caaggattgt tataaaaatc acagattttt ttcaaaaaga tcattgtaaa
     2761 agagcaaaca aaagagaaca acctgtggtg gatttcatac tttcaagaaa tttagacaag
     2821 caaactatag gaaaataatc aaactacagc cactatggct atagcaaaac cattatcatg
     2881 agaaatactt agggaagttt gagtgatatt aaaatctttt gtaatttttt gagaatattt
     2941 taatttaggc gcgttttttt catcttttga tatttcaata tcaaaaaaac tgcataattc
     3001 acaaattcca acacccaaag ccttgctagc ggcttcttta gcagcccaaa gacctgctag
     3061 agttgctgga tttttaatga gtatttgttc ttttgggctt agaaatttat ccaaaaaatt
     3121 tttgccatgt ctagaatgaa ttttttctat tctagaaatg gcgatgatat cacagcctac
     3181 acgcattaag aaactacaaa atccgtaaaa taaacatttt taataaagcc atcggttaaa
     3241 atttcattga tttttccaac tagctcatct tttaaacgtt ctttgccttt ttgtgtactt
     3301 acttcttcaa aagttttagc tgttaatgta cgaataataa tatcacgaat gactgggact
     3361 tttttatcaa gttcaggttt taaaagttcg ctattttgtt ctagttctat agtgcatttt
     3421 acatatcttg agccgctatc gctaagcaaa tttagggtaa aaggatcaag tggatacata
     3481 ggacctatat tagcaaaatc actacctcgc tgagcaggag ctgaaacttt aggtttatcg
     3541 gcttttgcct cttcttttgg agcttctttg acttcacttt catcacttga actgcttgaa
     3601 ataagccaag caattactcc cataatacta agaagtaaaa caaaaagtaa aataacaata
     3661 ataattacaa gtgaaccacc ttttttcttt tttgtttctt cgttttctaa ttcttcatcc
     3721 ataaattttc cttcatttag tgaaattaat gtaaaattgt agcaaaaatt tcttttctat
     3781 ccaaatttgc tttagaaaaa cgataaattt aggtcaaaga agagatgaat ttgaaggaaa
     3841 aaatgttaga tgtgattttt agagaatatg atataagagg actttacgac aaagaattga
     3901 atgaaaaaag cgttaaagct ataggttttt gtttgggaca aactatgtta aataggggtt
     3961 gtaaaaatgt aagcgtgggc tatgatgcaa gatatagtgc aaatgaactt tttaattatc
     4021 tagtgagtgg acttaacaaa gcgggaataa aaatctatga tatagggctt gtaccaactc
     4081 cattgggata ttttagtctt tatgagggct taaaatttga tgcaaatgtt atgataacag
     4141 gctctcataa cccaaaagat tataatggtt ttaaaattac tattaataaa gaaagttttt
     4201 ttggtgtaga attaaaagag ttttcaaaag aagtttataa gcatttagat gatgatattg
     4261 aagaaaattt agaagtagaa aaatacgata ttttaaacct ttatgtgaaa tttatgtgcg
     4321 agcaatttag ctttttaaag gattttaatt ataaatttgg tgttgattgc acaaatggtg
     4381 cggctggagt ggtgataaag cctttaatca aggctttaaa tttaaaagct catgtaatgt
     4441 ttgcagagcc cgatggacag tttccaaacc atgctccaga tcctacagaa gaagaaaact
     4501 taagtgcgat tagagaattt ttaaatcaaa atcaagatta ttctttggct tttgcttttg
     4561 atggggatgc tgatagaatg gttgctttaa gtaaaactca tgtattttgt ggggatgagc
     4621 tttgttattt gtttgctaaa gatatcccta atccacgcat tttaggtgag gtaaaatgtt
     4681 ctaaaaatct ttttgatgaa gtggctaaat ttggaactat ttttatggga aaaacaggac
     4741 attctaatat caaaaaaatg atgaaagaaa aagatattga tttagctgct gaagtgagtg
     4801 ggcatatttt ctttaaacat agatattttg gttatgatga tggaatttat gcatttttaa
     4861 gagccttgga gcttgtttat aaaggttttg atctagaaag tatgattaaa gctttaccaa
     4921 aactttatac tacacctgaa attaaaattc ctgtaaatga agaagaaaaa ttcaaacttg
     4981 tggaagaatt tcaaaaagag attgaaaaag gagctttaaa aggtgttaaa agtctttgtg
     5041 aaattgatgg agctaggata gattttggcg atggatgggc tttacttcgt gcatctaata
     5101 ccagccctta tcttatcaca cgctttgagg caacatcttt agaaagagca aaagagcttg
     5161 aaagtatggt atttactttg tttaatgata taaaagctag atttaagaat tgatgagata
     5221 atattccgcg atttaattta ttttaaaaag gaattaaaaa tgaaaaaaat acttatttta
     5281 cttacactat gtgcttttgc ttttggtgca agtgaatgtg atagaaaaat cgatcgtatc
     5341 aataaagaaa tcagtttttc taaagcgcat aatgatacag ctagaacttt aagcttagag
     5401 cttgctttaa aacaagtaca aaatgattgt gctaaagatc ctatgtttta tgataaaaag
     5461 ttagaagcta aaaaacttaa agaacaagaa gtggaaaaaa tcgaaaaaga acttgatgct
     5521 ttaaaagaac aaaaagatta tatgagtaag gctgagtata aagctaaaaa agaagcttta
     5581 aaagaacaaa aagagaaaat caaaaaagaa attaaagaat atatcgataa tctctaaaaa
     5641 ttaaaaagac taataaattt tagccttttt aaaccctacc ttttttaaga ttttctaata
     5701 attcttctat attataaatt cctctgtgtt ctggtgttaa aagatggatt aaaatatcac
     5761 caagatcaat cacgctccat tcttcactac tatctatgtt taaaaattcc tcacctttgg
     5821 ctttaagtcg tgttttaagc tcatcgatca aagatagagc gtgtctttct cctaaagtag
     5881 ctgcaataat gacatatttt acaaagtatt cttgctcgct catgtcaatg gttttgatat
     5941 tttcagcttt tttttcatct aaaattttaa cgattaaatc tattctttct tgcattattg
     6001 tcctttaatt tttgaaattg tatcaatttt tttgtaattt ttcataatat ttttttactt
     6061 catctttaat ttcttcacaa acctcatttg tatttaaagt gtcgcgtatg aaagaagaag
     6121 cgattttttt attggttttt aaatctttga aattcttagg aattcctata tcattgcgat
     6181 tagcaataac aaattctact aaagaattga gtttttcaaa atcatgccaa agatgaagtt
     6241 tttctaaatg atctgcgcca attaaaagat aaaatttact aggattataa agcttataaa
     6301 gatacttaac actttctatg ctaggaacag ggcgtttttg cctgatttca aaatcgcaaa
     6361 tttcaacttt tggcaaatgt ccccaaagtt ttttaaccca taagaatctt tgcttttcat
     6421 cagcactaaa actttgttta aaaggattga tataagtagg cataataata agtttatcaa
     6481 tatctaattt tcccaaagcc tctaaaacaa cgctattatg accattatgc ggtggatcaa
     6541 aactgccacc aaaaagtgct atcttcatta aaattttaac cttttttttg tagaatatta
     6601 gcattatatt ttgcaaaagg aaattaaatg gctgtaaaag ttgctataaa tggttttgga
     6661 cgcataggca gatgtgtagc aagaatcatc ttagaaagaa atgatattga gcttgtggcg
     6721 ataaatgata ctacggatat tgaacttaca aaataccttt ttaaatacga tacagtacat
     6781 ggtgaattta aaggcagtgt tgatagtgaa ggcgatgatt tagtggtaaa tggtaaaaaa
     6841 atcaaagtat ttaaaagtcg caatgtaaaa gatcttgact ttgcaaaaca cggtgtacaa
     6901 attgttttag agtgcacagg agcgcattta actatggcaa aatgtcaaga atttatagat
     6961 atgggagtgc aaaaagtgat catgagtgct cctgcaaaag atgatactcc tacttatgtt
     7021 ttaggagtaa attcagaact ttacaagggt gaaagcatta tttctaatgc aagttgtaca
     7081 acaaattgtt taggtcctgt ttgtcgtgtt ttacaagata attttggtat cgaaaaagga
     7141 cttatgacaa caatacatgc ttatacaaat ggacaaagta ttattgatgc taaagctaaa
     7201 gataaacgcc gttctcgtgc tgcagcacaa aatatcattc caacttctac aggcgcagca
     7261 aaagctatga agcttgttat gcctgagctt aatggcaagc ttcacggaca aagtatgcgt
     7321 gtgccagtga ttgatgtatc aagcgtggat ttaaccgcac aactaagccg taaagttagc
     7381 aaagatgaaa tcaatgaagc ttttagaaaa gctgcaacta caaatttaaa aggcatttta
     7441 atggtagatg atgatgaaag agtttcaagc gattttatca cttgttctta tggagcaatt
     7501 gtggcaagtg atttaactca agtgattgcg gatgatttta tcaaggtgat tgcttggtat
     7561 gataatgaat ggggctattc aagtcgtcta gtagatatgg cagtatatat tgcaaataag
     7621 gcttaatcat gagtgatatt atttctataa aagacattga tttagctaag aaaaaagttt
     7681 ttataagatg tgattttaat gttcctcaag atgatttttt aaatatcact gatgatagac
     7741 gcataagatc agctattcct acgataagat attgtttgga taatggttgt agtgtgattt
     7801 tagcctctca tttagggcgt ccaaaagaaa ttagttccaa gtattcttta gaacctgttg
     7861 ctaagcgtct tgctagactt ttagataaag aaattattat ggcaaaagat gttatcggcg
     7921 aagatgcaaa aactaaagct atgaatttaa aagcgggtga aattttactt cttgaaaatt
     7981 tgcgttttga aaaaggcgaa actaaaaatg atgaaaattt agccaaagaa cttgcttcta
     8041 tggttcaagt ttatatcaat gatgcttttg gagtatgcca tagagcacat tctagtgtag
     8101 aggcgattac taaatttttt gatgaaaaac acaaaggcgc aggattttta ctccaaaaag
     8161 aaattgattt tgcaagcaat cttatcaaac atccagcacg tccttttgtc gctgttgttg
     8221 gaggttcaaa ggtaagtgga aaacttcaag cattgacaaa tttattacca aaggtagata
     8281 aattaatcat aggcggaggt atggcattta cttttttaaa agctttaggt tatgatatag
     8341 gaaattcact tttagaagaa gaacttttag aagaagctaa taaaattctt accaagggta
     8401 aaaatttagg agtgaaaatt tatcttccag tagacgttgt agccgctcct gcgtgctcac
     8461 aagatgcgcc gatgaaattt gttccagcgc aagaaattcc aaatggttgg atgggtttag
     8521 atataggacc tgcgagtgtg agacttttta aagaggtgat ttctgatgca caaacgattt
     8581 ggtggaatgg acctatgggt gtttttgaaa ttgataaatt ttcaaaaggt agcattaaaa
     8641 tgagtcatta tatcagcgaa ggacatgcaa cttctgttgt tggaggcggt gatacggctg
     8701 atgtggttgc gcgcgcaggt gatgcagatg aaatgacttt tatttccact ggaggtggtg
     8761 cttctcttga acttatagaa ggtaaagaac ttccaggcgt aaaagcttta agatctaagg
     8821 aaaatgaatg atctttgctg caaatttaaa atgcaatcac acaagagcaa gttttaaaat
     8881 ttatgctgaa attttaaata aaactatggg agcaaaatgt gatgatatta tcgttttccc
     8941 acctagtgta gcatttttag aaaatgaaaa taacttcata caaggagcgc aaaattttta
     9001 tccttgtgtt aatggtgctt ttacaggcga gcttggaaaa gagcatttgg acgaatttgg
     9061 gatcaaatgt gttttaatcg ggcattctga aagaagagct ttaggagatg aagaatttat
     9121 taaggctaaa tttgattttg ctaaagagca tggttataaa attgtttttt gtataggtga
     9181 aaatttagat acaaaaaatt caggcaagac tttagagttt ttaaaaaaac aacttgaaat
     9241 tattgattta aattatgaaa aactcatcat cgcttatgag cctatttatt ctataggaac
     9301 gggagtgagc gcacaaagta cagatatcgc taaagtgctt gaatttttag cgagtttaac
     9361 caaggtacct ttgctttatg gtggaagtgt gaatgaaaat aatatcaaag aaattttaag
     9421 tgtaaatcat tgtggtggag ttttgatagg ctctgcagct ttaaaagtag aaaattttat
     9481 aaaattaatc aaaggataaa agatgattat gaagggtaaa aaaggcctta ttgtaggggt
     9541 tgcgaataat aaatctatcg cttatggcat agcaaaagca tgttttgatc aaggagccga
     9601 gcttgctttt acttttttaa atgatgcttt aaaaaaacgc gtagaaccta tagcacaaga
     9661 gtttaattct aattttgttt atgagcttga tgtaaataat aacgagcatt tagattctat
     9721 cgctgaaaaa atcaaaaaag atttaggcga gattgatttt gtagtgcatg cggttgcttt
     9781 tgctccaaaa gaagctttag aaaattcttt tttagaaact tcaaaagaag cttttgatat
     9841 agctatgcaa acttctgtgt attctttact ttctttaaca cgtgcggttt tacctatttt
     9901 aaaagataag ggttcgattt tgactttaag ttatcttggt ggggttaaat atgtacctca
     9961 ttataatgtt atgggtgtag caaaagctgc acttgaaagt tctgtgcgtt atttagcaag
    10021 agatttagga gtaaaaggaa tccgcgttaa tgctatttca gcaggtccta ttaaaacttt
    10081 agcagcaagt ggaatagggg attttagaat gattttaaaa tacaatgaaa tcaattctcc
    10141 tttaaaacgc aatgttagta tagaagatgt aggaaattcg gctatgtatt tacttagcga
    10201 tttggcaaat ggtgttacag gtgaaataca ttatgttgat gcaggatata acatcatggg
    10261 tatgggtgat gttgaaaaaa atgaagaagg gcaaactgtt ctttgttggg ataatcaaaa
    10321 aggataaaag atggcaaagc ttagcaatga agaattaaaa aatatacttg aagatcgcat
    10381 taaaaaactt gaaaattcta ctttaaaaga ggataaggtt atcaatgaag aaagtgtaaa
    10441 aattcttgct aagcacttat ctttaggtaa tgaaattcca gttcttgcac aaagattttt
    10501 tcaaatcgca cctaaaacaa agttagtatg gcttcatctt tgtgaatgta cagggtgtag
    10561 tgagagtttg ttgcgttctg agttgccaag ttttgatgag cttatttttg attttttttc
    10621 tttagaatat catgaaactt taatggcagc aaatggcact aaggctgaag agcttttaga
    10681 acatgtttta gaagaagatt ttattttagc ggttgaaggt ggtgttgcag ccattgatac
    10741 cttttttctt actataggag cgcaaggaga gagtggctat gaaattttag acaaactagc
    10801 cgctaaagcc aaggctatct ttgcagtggg tacttgttca agttatggtg gtattcaagc
    10861 tgcttatcca aatcctagta aaacttgtgg tattagcgaa gttttaagtc agaaagtagt
    10921 aaatatccca ggttgtcctc caagtgatat aaatatcatt gcgactttaa gtttttttgc
    10981 tttatttgga gttttgcctg aacttgatga gcaaaatcgt cctgtgtggg cttatggtaa
    11041 atgtttgcat gatatgtgtg aaagaaaggc gaaatttgaa agtgggattt ttgctgaaca
    11101 ttttgacgat gaagctgcaa agaatggagc ttgtttattt aagataggtt gtaaaggacc
    11161 ttatacttac aacaactgtc ctaaagtgaa atttaatgct aaaacttctt ggccagtggc
    11221 tgcaggacat ggttgtatag cctgtagtga gaaaaatttt tgggatgagt ttgggaatta
    11281 tgaaaaacct atggcaaata tttcttctta cgctaaactt tgcaatgaag agttaaaaca
    11341 agaatttttt ctagaagagc aaattaaaat tttagaacaa atagattttg aatttgaaag
    11401 caatataaaa cttattttac aaaatatagc taaaaataaa ttaggtgctt cgcttgtaga
    11461 aaattataaa aaatcctttg agaaaaacta tgcttttata gaacaaaatt ttgatgaaaa
    11521 tcctatgcct tcaaaagatt tttggaaata tcttgagatg agttttattt tggttaaagg
    11581 cgcattttta aaagataaga atgatttttt aattgcggca aaaaattatg cttttaaaca
    11641 tgcaagtcct tatgatttta agttaaatat gaatgctgaa aaaccaaagc ttgatgtgag
    11701 taaatctttt cgtatgactt taatctatct ttgcggtggg cttgattttg aaggtattgc
    11761 ttatagtatt ttaaaagctt ttgaagataa tatcactaaa atttcatcat taaaagcaag
    11821 ttaatttaat aaaattttag caatatgaag ccctataaaa gctactatat aagcacttgt
    11881 gcaggtaaaa agaaagagaa agagagtata ttttagcttt ccactttctt ttgaaaaaac
    11941 tatagttgct gcaaagcagg gattataaat cattacaaat aaaataaaag ccactgcact
    12001 tggtataggt atgtttttag cgataattcc ttttaaatca ttatttgttt catctacatc
    12061 ttttcctagt gaataaagca cgcccatagt tgagatcatc acttctttag cagccaaacc
    12121 actgattaaa gatacgctta atttccaatc taactcaagg ggtttaaaaa taggttctat
    12181 gcctttgcca aattgtccta aataactttg ttctatagct ctttcttgag cattaaaatc
    12241 atttaaattt tcttcacttt ttggaaaatt actagcaaac catataagca aagaggccaa
    12301 aagtatgaaa gttcctgctt ttttaagata cattttggct ttattataaa ccataaacca
    12361 aattaaatgc caatttggca tacgatattt tggcatttcc ataacaaaag gttcatcaag
    12421 tccacgaaat gctgtcattc ttaaaaattt tgcagcaaaa agtcctaaaa tcgcacctaa
    12481 aatataaatt ccaaaaagat aatttcctgc tttttcactt ggaaaaaaag caccgataaa
    12541 aagcacatat acaggaagtc ttgccccgca actcataaaa ttgatcacaa aaagagttaa
    12601 aagtctatct cttttgttct taagagtgcg tgtagccata aaagcaggta ccgaacaacc
    12661 aaaaccagtg attagcggaa taaagctttt accatgcaaa ccaaatttat gtaaaatccc
    12721 atcaagtaaa aaagctactc ttgacatata gcctgtggtt tctaaaagag ctatgcctaa
    12781 aaataaaatc attatattag gcaaaaaaag tatcacagca ccaacacctg cgataatccc
    12841 atcagccaaa gctgaagcga taaaggtatt agaaatattg tttttaacaa attcacctaa
    12901 ggcattaaag cctgattcta tataatccat aggaatttgc cctaagctaa aggtgagttg
    12961 aaataaaagc cacattaaaa ataaaaatat aggtaagcca aagaatttat ggataagtaa
    13021 ggcatcgatt tttttggtta aatttctttc ttcttttttg tgtgtaataa ttttttttga
    13081 aagttgatta ataaaatata ataaatcttc tttttctgga cttttttctg gacttttttc
    13141 gcaaagcgga gtgtaaaatt gggatcttgg aataaattta ctttcaaata aaataataat
    13201 tttttgcagc aaaagttcta aattttcttt tgtttttgct gaaatttcaa caacttgact
    13261 ttgaaattct tggcttaaaa cagaagtgtc aagctctata ccttcttttt tggcttcatc
    13321 gcacatattt aaagctaaaa gcattttttt attaaggctt aaaagttctg cactaaggat
    13381 aagattgcgt tctaaattgg tggcatctaa aacattaaca ataacatcat agtcattttg
    13441 atttaaaaaa tgacgtgtga ttttttcttc ttcgctatat ccatctaaag aataagttcc
    13501 tggtaaatca atgacttcaa attcatagtt tttgtaaaaa gtttttgcac ttgctttttc
    13561 tatagtaact ccgctaaaat ttcctacttt catattagct ttgcaaagcg cattaataag
    13621 aagacttttg cctacattag gctgacctac aagggctatt ttgatttttt tcatataaga
    13681 ttcacttcta tggttttagc ttcatcagat cttaggataa cacaacttgt atcaagttct
    13741 accattatgg tggcattttt taaagaggag tgaatttttt tcaagttttt atttttaata
    13801 aatccaaagc ttaaaagtct atttttgagt tctttgtgag cgtttaaatt gacaataata
    13861 gctttttgtc catcttttaa ctcgtttaaa gtcattgtaa ttcctaaatt aataataaat
    13921 attataataa aaaagtgtaa tgaaattatc cttcttgtaa aaagaaggat aaatatttaa
    13981 aaagaaaagt ggtttaaatt ttctagattg atgatttgat ctagaatttt gttagcttta
    14041 gtattatcaa ggtaaatttg tgcattggct aaaaatttag cttttaattc ttcaaaactt
    14101 agtggattat caaaattacc tttattgata aaaacatctt tttggattat gcgtccatct
    14161 tgcaaactgg cttctaaatg ccctggaaaa tattttggaa agccttgaga tttccttttt
    14221 ttgtaactga tttttttagc aaattctagt acttcttcac gctttaaatt ttcataagat
    14281 tcaagagtga ttttaccatc aaagaatcct agagccatta aaaaaggcat ggaaaattta
    14341 gcttcataag cactatttgg agtgtatttt gcttccaaag gatcgcagat aaaagaaata
    14401 ggaacttcat ctacaaagca atgaatactt ttaatttcat cagcttttaa accatcattt
    14461 tttaaagcaa tagcacaatc aataagccca tgagcaaaat gacaacttgg ataaggcttg
    14521 attgaaactt gcatggtttg ccaaatttca cctaaggctt tgctaagttc tgttttatcg
    14581 cattcttctt ctataccaaa acatttaaag atattatccc taccttcaaa aatactcaaa
    14641 ggtccactca tattgttttt agcaaaatga gctaccataa tgccgttttt aatagcattg
    14701 gcaatatgta aaacttttga attagatcca ttggataaaa actcattaac cctacttgca
    14761 aaacttcctg caagtcctaa agcattgatg atttgttctt tgttaagatc cagcaagatt
    14821 gcacttgcac tcacgcttcc aaaaattcct gcaatagcag tagtatgaaa accgcgctta
    14881 tgaaaagtgc ctttacttgc aatgcctact ctagctgcaa tttcccagcc tattataaaa
    14941 gctttgatga ttttttttgc atctttacta acatgaaatc cataacttaa acaaagtgga
    15001 gttaaaatcg cacttgcatg caaaatcgct tctgtatgcg tatcgtcaaa atctaacgca
    15061 tgagaagcaa tgctatctag catggctgcg tatataggat ctaatttttg atcatttacc
    15121 caaataggag tatttttttc tgtgcttaaa ttttcaaaag ctttaaaagc atttaaaaca
    15181 cattcttctt tgcttgctgc tatagctgtt ccaaggctat caagcataag ttctttagcc
    15241 ctttgaacaa ctgtattagg gatattttca tatttaagat tgaaaataaa atccgctaaa
    15301 atttcactat agaacatgat ttttcctatt ttaagatagc gctatttttg atttttgcta
    15361 aaaattcatc tacaagtttt ggtgcatatc ctacataggt tgttgcatca agtaaagcat
    15421 caatttcttt ttctttcaat accttagata ctcttttatc tgcaagtaaa acttctttaa
    15481 aagttttttg tttttctata cctagcatag cattttcata aacaatttca tgggcatgtt
    15541 gttttccata atgatcgctt aatgcaaaca taacacgctc tgctaaaaca aaaccattaa
    15601 gagtatttaa atttttaagc attttgtctt tttttacttc taaatcacta agagcgaatt
    15661 tcatatttgc taaaaccaca gaaagcatta aaaacatttc aggtaaaagc ttccattcca
    15721 ttttccaaac ttgaccatct ctttcatgtt catgtctttc aatatcgctt aaaatggcta
    15781 aatttgcctt aaaggcattg cttactgtaa ctgcattttc gcttactgca ggatttcttt
    15841 tgtgtggcat agtgcttgat cctacttgtc ctttgccaaa aggttcagca acttcatcaa
    15901 tttcattatg tgaaaggatt aaaatttcat gagcgatttt gttaaaagtt gcgttgatat
    15961 tgcctagtac aaaaccaagt tctataaagc gatcacgtgc gctctgccaa gaaatattag
    16021 gcacatcaag tcctaaattt tctaaagtga gtttttctac ttcattgcac tcatcactta
    16081 aacttgcttt agttcctaca gcgcctacta tactgcctac ataaagtctt ttttcaagtt
    16141 caagtattct ttcaaaatga cgctcaagtt cgcttaacca aatagccact ttatgtccaa
    16201 aagtaatagg caaagcctga agtgctaaag ttcttcccat catagcagtg tttttatggg
    16261 ttttagctag tttcgctaag gcttttgcga tagcttttaa ttcgcttttt acaagagtca
    16321 ttgcttcttt aaattgtaaa accagtcctg tatcgatgat atcttgagtg gttactccaa
    16381 aatgtacata ttcgcctaaa ttattatcgc aagctttttc taatcctctt acagtaggaa
    16441 ctaaagggtg tttggtcttt ttaaattcag caaagataaa gtccatatcc ataaatttat
    16501 aatgagcttt ttttgcgatc tcatcagctg cttttttagg gataatttta agttttgctt
    16561 gtgcttttgc taaagctgct tcaacatcga gccatttttg tatgcggttt tgttcgcaaa
    16621 aaatagcacg catttcctgc gtgctccatg agtctgctag taatctatga tcaaatacgc
    16681 taattcctgt catcttatct ccttattttt taatactatc aaaagcttgt gttaaatcag
    16741 caattaaatc tttagtatct tcaagaccta tatgaaatct tacaaatggt cctcttgcac
    16801 ttaggtctgt tgcagttcta ggtggagtag ttacggtggc caagctttca tatccacccc
    16861 agctagcacc aattgaaaag tattctagtt tatctacaaa tttaatagca tcctctttgt
    16921 tataaccttc tgcaaattct atggtaatca taccatttgc acctttatga tcacgcatga
    16981 aaatttcatg atttgagtgg gatttgagtt ttggatagaa aattgtttta atttcttttc
    17041 tactttgtaa aaactctaca atttcatcag cacttttttc atgggctttc attcttacat
    17101 ctagtgttct cataccacga agtactaagt aagcatcatc aggacttgtt gtaaagccta
    17161 aagcttctgg aagtttgtca aaatttttcc attctttttc gttgattact actataccca
    17221 tggttacatc agagtgtccg ctaagatatt ttgtagcggc gataactgaa atatccactc
    17281 caagttctaa aggatttaga aaatatccac tagaataagt attgtcaata gctacaggga
    17341 tattatgcgc atgggcaatt ttgcaaagtt ttggtaaatc tatgatttca taaagtatag
    17401 aacctggact ttcacatagg ataagcttgg tattaggttt gatttttttc ttctacatca
    17461 cttgcatcag cttttaaaaa atcaatttca atgcccattt tttctaaaaa taattcgcaa
    17521 atcgttctta caggcccata aattgcatca gtgattaaaa aatgtgtatc tttgcttgca
    17581 tagtttaaaa gcaccatagc taatgctgca agtcctgttg ggaaaagttg tgctctataa
    17641 ccaccctcta gagtgcaaat aagtttttca agttcaaaat tggttgttgt tcctctagct
    17701 ccataactta aaacacgatc tgtttttctt aatcctctgt atttttgcca agttgcgtga
    17761 tctttaaaaa gtatggttga tgcacgcata agtgtaggat tgactgatct tacttcagcg
    17821 ccttgatcgc ctctgccaca atgaataagt ttagtttttg agttcatttt ttctcctttt
    17881 taaagataga tataagtcat aataacattt acaatagccg ctacaagcat aggaatagct
    17941 gttcttttaa ccacggcaaa aggacttact cttgcaatag ctgagatagc taagatcgct
    18001 agtgcaatag gactaacaca tcttccaaag cccgtcatga tttgaatcgg tgctatcata
    18061 gtgatagttt caactccaaa gtgttttgct atatttggga taagtggggc aaagctaaaa
    18121 aatgccgcat ttcctgaacc cattaagaaa gcacaaaccg caagtaagat tgaaacagcg
    18181 ataataatag ccaaaactcc aaatcctgca tttttgcaaa attctattaa agtatctaca
    18241 aaacctacag ataaaagacc acttgcaaat acttgaccac aaacgatgag tgaaactgtg
    18301 ataacaaata aatgtcccat tcctttaaag aaaatcatca tagaattaag agtttctact
    18361 atacttttat agcgtatcat ttcaaaaata atagccacaa aagttgaaat caccattgct
    18421 actggaacat tcattttaat tgcagtgcta gcagctgctt taacttcttc agcgctactt
    18481 attcccatta aaaccaagat gctatcaagc acggaactaa atcctaggat taaaaccaaa
    18541 ggaattatag gtaaaatcgc ataaattcta ggaggctttt taagttcttt ttctttacct
    18601 tcattttcat ttagttcttt tttcaatttc ttgcgcattg aagacaaaat tatctttttt
    18661 gtcaaaaaat ttattgcaaa gatatattgc aatacttaca gctataatga taggcaaggt
    18721 tgtagggagt tgataatgaa caaaataaat tgcaggatca acttcagctt tttctgaggc
    18781 catgatcaca tttccacttc caggtccatg atcgatatat tgacaaatag caatcacact
    18841 taaggcagaa agttttgaaa caccagagcg tacaagtata ggatacatag taaccataag
    18901 taaaagtgcc aagcctgcgt gagaagggat gaaaagaact aaaaattgca cgataaaata
    18961 agcaactatg agtaaaacat aaggagattt tacggctttt aaaggttttt caaaaacttt
    19021 aaaaagtgca taagaagccc ctacatgatc catataagca gaaaaacctg ctatagtcat
    19081 aagtgtaagt ccaagctctg ctaatgtact tgacatggtt tgattaaaaa cttgaaaaat
    19141 atcaaaaaaa cctagattta aagaatcttt ggtaacaatg tgtggagaaa gtccaaaaat
    19201 agcagctaag gaaagtaaaa gcaaaccact taaaagcagt gccatgtgag cattgatttt
    19261 tttataaagc ataaaaacaa gtaaaaaaac actaaataaa gaaaaaacaa tacctagcat
    19321 attttatcct ttttgagcga tgatctctat ctctacttta gctttttttg gtagatcttt
    19381 tactgcaaaa gcacttcttg ctggataagg agctttaaaa aattcagcat aaatttcatt
    19441 aaatgctaca aaatcattaa tatcagctaa aaagcaagtg gttttaacca ctttatcata
    19501 actgatacca ttttcttcta agatagcacc gatatttttc aaagattgtt tggtttgttc
    19561 tttgatatca tggctttcta tttcgcctga atcagggttg ataggaagtt gtcctgatat
    19621 aaataaaagt ccatttactt ctctgtaagc tgagtatgga ccaatggcct ttggatagtt
    19681 tgacatgaat tctcctttgt taaatataga ttaagcagaa tgcattttat cactacaata
    19741 ataatttgtc aatagtttat tatcataata ataaaatttt atttttaaga aatgttttaa
    19801 agtataaaga gtagaattta atattatatt aattttttat tgaaggcagt tttatggatg
    19861 agggacaaaa acaacaattt ataaagttga catatttttt aggagaagtt ttaggtgagc
    19921 aatatgagat agttttccat gtaattactg aagatggggc ctatattgca gcaattgcta
    19981 acaatcacat tagtgggaga agtttagatt ctcccttgac tgtttttgca agtgagctta
    20041 tgcaaaataa aaaatattta gaaaaagatt ttttatgtga ttataaggct cttgttggaa
    20101 aatcaaaatt aattagagga tctacttttt ttattaaaaa tcatgacaaa ttagtaggta
    20161 ttttgtgtat caatcatgat actagcatta tgagagattt aatatgcaag atgattgatt
    20221 tagaaaaaat tggagatatg ggtgatattt taggaaatat tagtttttct caaaatgatt
    20281 caagtataga aacattaagt cactcgatag aggatatttt agttcaaagc gtagattcta
    20341 gttatttaaa ttctgattat caattaagta ttactcaaaa agaagaaatt gctgaaaagc
    20401 tatatgaaaa aggtattttt aatataaaag gggcggttcc tatcgtagca aaatttttaa
    20461 aaatttc
//
LOCUS       DARGEX010000018        20147 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.018, whole genome shotgun sequence.
ACCESSION   DARGEX010000018 DARGEX010000000
VERSION     DARGEX010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20147
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.018"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(129..386)
                     /locus_tag="SF010_000536"
     CDS             complement(129..386)
                     /locus_tag="SF010_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229489.1"
                     /translation="MCKIIKYLDYTKLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIY
                     ENIAVFFQDCFLMSVIFIIGITGLFHTCKGLRKYKEILKKV"
     gene            878..1096
                     /locus_tag="SF010_000537"
     CDS             878..1096
                     /locus_tag="SF010_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEG8229490.1"
                     /translation="MLLNIIIEKDQDGYFARILELEGCVSQGNTYEETLANIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            1089..1292
                     /locus_tag="SF010_000538"
     CDS             1089..1292
                     /locus_tag="SF010_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEG8229491.1"
                     /translation="MPELPRMTAKEAEKLLLQNNFLIDRQKGSHRIYKKGLYRMVIPH
                     HIGEILHPKIIKQLFEIIEVAKD"
     gene            1296..3089
                     /locus_tag="SF010_000539"
     CDS             1296..3089
                     /locus_tag="SF010_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8229492.1"
                     /translation="MPKRNTIDTITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILGRIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANDSSYVISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYK
                     ESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFHNKYKNENDLFFIYESN
                     NRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD"
     gene            complement(3212..3826)
                     /locus_tag="SF010_000540"
     CDS             complement(3212..3826)
                     /locus_tag="SF010_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEG8229493.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIHLDEILEVKISST
                     KSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMEL
                     SNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKD
                     IDKIQTLLDKDLSIKSIWKLLYKDNGKSYDGLLWFIKKRKLKGS"
     gene            complement(3823..4200)
                     /locus_tag="SF010_000541"
     CDS             complement(3823..4200)
                     /locus_tag="SF010_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HEG8229494.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKD
                     FHQKLKEFTEKTPKNQKLKDLER"
     gene            complement(4191..4514)
                     /locus_tag="SF010_000542"
     CDS             complement(4191..4514)
                     /locus_tag="SF010_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229495.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
     gene            4685..4948
                     /locus_tag="SF010_000543"
     CDS             4685..4948
                     /locus_tag="SF010_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEG8229496.1"
                     /translation="MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLL
                     TIALMWGASKIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT"
     gene            4961..7729
                     /locus_tag="SF010_000544"
     CDS             4961..7729
                     /locus_tag="SF010_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HEG8229497.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLV
                     GFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSN
                     FPKISVFGLNAEPSFEKLIPFSSLINDSVVITKDYFLMTTWEIGGISFEAEEDDELDI
                     KNDLLNMLFKSFANESVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLR
                     KNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPK
                     RLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFN
                     QNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQK
                     KQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTK
                     MNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKN
                     CWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIV
                     DQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNP
                     FMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISL
                     LLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDD
                     KDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFL
                     RLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNP
                     VKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLE
                     LKEIYKNS"
     gene            7740..8306
                     /locus_tag="SF010_000545"
     CDS             7740..8306
                     /locus_tag="SF010_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEG8229498.1"
                     /translation="MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIE
                     NILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFT
                     GKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDN
                     PYSKEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            8303..8968
                     /locus_tag="SF010_000546"
     CDS             8303..8968
                     /locus_tag="SF010_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229499.1"
                     /translation="MSDKELQKEILALENDVKQLEATIDVIKQRITHLKDIAWDRQSK
                     KESSQMYKVLKEDKTHTRVKSNVGDIKVDKDFMDKEIKKHLDNPNLRGMVTTQEMLSF
                     PKVAKGVEANNEARGYTWQVKANDGNTLVYGSRKYETNNEKIHRLATSHSKTEKNERQ
                     AEVGGRSHPHHPIFNDFNFRKSAENIISQQNKSTNDFKAKLEEFSTKKTNAIESINKE
                     FKR"
     gene            9002..9427
                     /locus_tag="SF010_000547"
     CDS             9002..9427
                     /locus_tag="SF010_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8229500.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLTVIVSKFY
                     WLGKKDKDDNGTQNPQVPPKEPNIDYENTNIESEETQVF"
     gene            9449..9718
                     /locus_tag="SF010_000548"
     CDS             9449..9718
                     /locus_tag="SF010_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229501.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKNSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDKAIDKELCKKQEKSFER"
     gene            9722..10693
                     /locus_tag="SF010_000549"
     CDS             9722..10693
                     /locus_tag="SF010_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8229502.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGARLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKFSHRVAALWLTPQNYIQKFKKSILILTSLLVLPNLAFSAGIPVVDVTA
                     NQQMATQNAKQVAEWAKDASRWTETVAHYQKQIQAYKDELLSKTGIRDSVTFLKDIKQ
                     IYSDFAEVGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANASYENQRKIKEDMAMQEYSKSLQKPRESAMEFFKNNK"
     gene            10690..11688
                     /locus_tag="SF010_000550"
     CDS             10690..11688
                     /locus_tag="SF010_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8229503.1"
                     /translation="MNLDLFQTLGKSIQQIVDAIRQVGTNDKVAELSVLLSIIITLVI
                     MYKGYEVLMGRSQSPIRELTWDIVGKLVAITFALNLGGWLDLTISTMDGLYEWAGGGT
                     QMYKTLDEMYANTAQLTNIIWAKSSGVGGAILAIVAMLLCYVGFAIAVVPALTIFVVT
                     TFTQTLLVITAPIVFWLLVFKATKNVFTQWIGLLLSNTLVILLVGLFLGVFMEQISTW
                     IKYFAKVTQAGDEVLGTSIFFVIAALVLVIMIISAKLYAEKVANVSMEGAMGGVIGSV
                     LNPVGRLAGWAGGKVAGKTVNTAKAGGKLAAKGTLASAKGGYSFAKKMYERARNAG"
     gene            11678..11845
                     /locus_tag="SF010_000551"
     CDS             11678..11845
                     /locus_tag="SF010_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229504.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPVNTQN
                     KDLNKGTMDEK"
     gene            11835..12497
                     /locus_tag="SF010_000552"
     CDS             11835..12497
                     /locus_tag="SF010_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEG8229505.1"
                     /translation="MKNEFNTAIDYEASFRYLIEKSNKRAWLIAFISIFIAIISIIAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEIKANEALDKYFISTYVKAREGYYYD
                     LLNQDYLLTQLMSSEKVANEYRALYEGDNARDQILKNSNEVSVQILSIVLGESNGVKT
                     ATVRAIITTKNLTSKGTTQATKVITLSYDYILAKASEENRFLNPLGFKVLTYRIDDEV
                     AQ"
     gene            12494..13381
                     /gene="virB9"
                     /locus_tag="SF010_000553"
     CDS             12494..13381
                     /gene="virB9"
                     /locus_tag="SF010_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HEG8229506.1"
                     /translation="MKKIILINLLLCSFIWALNIPKTSTFDKRIAYAIYNANDVFQIN
                     AKNGYVSVLEFGTDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQENNNIGE
                     SQASQEFVLDPNPHDWKTNLIVITNLNTYVFDLKLVNQNNNATYKLSFSYPKKDLKAA
                     KEFLEAQEQENIRRDLNKNTIPRNWDFYMKINKGSEDISPNFAYDDGVFTYLGFDNTK
                     TFPAVFMYDNGKESILNTHIKKDGNYEVLVIQKITKQILLRSGDKVVGIFNRGYAKNP
                     LDKTRETSNENIQREINKK"
     gene            13408..14583
                     /gene="virB10"
                     /locus_tag="SF010_000554"
     CDS             13408..14583
                     /gene="virB10"
                     /locus_tag="SF010_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HEG8229507.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHDQKNHLRKIQAYVIFAVGGLLLV
                     LILVYFLKSFLSSNTTTEEVQKEDNKDLAQSVKTKEFIPPPPQKTFDELIAQESPKPT
                     QDLILEPKPPKPRIVKGAGVTVVASSNNDGFGNNGTGNREEFGEKPNTVFEFGQNGSL
                     QNSNNLQGGSNGDFVGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIA
                     CIVSNDVYSANGNTLLIEKGSTITGTFNTGQMDDGMDRLFVIWQEIRTPNNIIIPVYS
                     GATDELGASGVQGWVDHHYLKRFGSAVLLSMIDDSLAILADQIAGKDNKNNYANYTEN
                     TRDSAKEIANTALEKMIDIKPTLYKNQGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR"
     gene            14564..15556
                     /gene="virB11"
                     /locus_tag="SF010_000555"
     CDS             14564..15556
                     /gene="virB11"
                     /locus_tag="SF010_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HEG8229508.1"
                     /translation="MSITLDKYTQKFFGEFLKDDNINEICYNGDNKIWVQNSKGLWEC
                     IDTKLDFEQAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHIKSGLFEDLNPDDKNKIKPSDEELIKLYEARDYQNFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEMER"
     gene            15557..17368
                     /locus_tag="SF010_000556"
     CDS             15557..17368
                     /locus_tag="SF010_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEG8229509.1"
                     /translation="MQNNKSIQMIFLAIASFILTYLITPIVFFFLNKVKIMKAIEIYN
                     INFTLQAISNGYPKIWLSLGITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFSDNGIIIGKYKGKILRFSGQQFVALGAPTRSGKGVGIVIPNLLEWRESAVVQDIK
                     QECFDYTSKYRKEILGQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLGNILY
                     PQDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDYGKEFQSAFDINVGEFNFYNILQLS
                     KGFSLKNEGKTLKGFDDTYNFLSYCEVLDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKDLKYTCLMVMDEFTAPGRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTKSRSINTGNNGGGS
                     HSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     STIRKIPSRKQLEDAILKGECKVKIQIIGENNDKKIA"
     gene            17349..17786
                     /locus_tag="SF010_000557"
     CDS             17349..17786
                     /locus_tag="SF010_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HEG8229510.1"
                     /translation="MIKKSLDNLVIMALVFIMVGCSTAPKPKELDDNSALSINNSILE
                     KKYSFVPKDPYLSGFNWTYHIVVEKKTIDDDFIKNDLITKTFLLAHNSTKIILVGRKD
                     LIEQYKQYFEKNQVLAPIELQPVNPIERDFNKVNILFFNKTNF"
     gene            17798..18562
                     /locus_tag="SF010_000558"
     CDS             17798..18562
                     /locus_tag="SF010_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229511.1"
                     /translation="MKKILFPFCVFGVINSVNALDLQLLSGDTRTSCEVILCLASPVK
                     PPECASSLAKYFSIHFKKPWKTIQARKEFLNLCPIDTTNDPEMYKYKNDILVNLDGEC
                     STTALNQRIEKSKQPLKVEKICTGGGHNGSRECVEIKTYGFRINPELTNSCKLLASSK
                     YTDYHLKYTCDKKFYEQKDWERGYELKEVSQEIYNALPVSQREQGEKLTPISYGEFIK
                     LPANKRKQEGFGKYYRIDIAYYQKIIIKKDCWINEK"
     gene            18565..19362
                     /locus_tag="SF010_000559"
     CDS             18565..19362
                     /locus_tag="SF010_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229512.1"
                     /translation="MNEEINSNENNLFEIVNEDNSKNIAMQNYNELLEKFENLIKIII
                     AKINVGKQNAQNNTEDGIFKDLESNIIELDNTYLALISYFKNPPNDEEKEIINKTISI
                     KKTMEDFAKFANEIQKISLDDKLKQYNEQINKFCEIVEYKLSHNAKNYNTFLDHFVED
                     GKQKLNTFSEIFTKMTKNTKWYLIFFSFTSIGLGIALGILILLTYIKYSEYNNLKERV
                     STITQGLATISIDENSKGSFTLSFAKNKKTIFNENKNSIQITLQGGE"
     gene            19433..20053
                     /locus_tag="SF010_000560"
     CDS             19433..20053
                     /locus_tag="SF010_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229513.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYKNKEGDIQQRKVDTALIDVIKEA
                     GQVAAMEHGAVLFSAKINDEWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKREAAKELIEGIGIIEHQNQDGTKSHYLETNVRLYNEELKQELKEKGNE
                     FIAVISNAGIRIVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
BASE COUNT         7820 a         2629 c         3118 g         6580 t
ORIGIN      
        1 aaaagtaaat aactattata tattaaaaat tactgatata taatagttat ttttagtaat
       61 taatgttata tgttaaagtg taatacaaaa agattatatt acacaaatct tgataaaagt
      121 ttttatcatt aaaccttttt taaaatctct ttgtattttc ttaaaccttt acaagtatga
      181 aataaacctg tgattccaat aataaaaatc acagacatta aaaaacaatc ttgaaagaaa
      241 acagcaatat tttcataaat gaaaaattca aaaacaagaa ataaaaaact taaaaaagtt
      301 acaattaaca taattgttaa atcaaaatac agcttctcta aagtgttaag tttagtataa
      361 tctaaatatt taataatttt acacattctt ttacctctgc ttcttatgct tattttctat
      421 taaaacatta tatcataatt tctatttcta ttagcaacac tttctgtttg gagtttttta
      481 aaataaaagt tcaaaaattt taatttttga tttaccttat ttaatattat agaatttaat
      541 gaatttaaga atttaggaat tattacattt aagtcaattg tttttttaaa gttcttattt
      601 tccatatatt cttttcgtaa aaatgtcaaa aattattaca tttaagtcaa aaattattac
      661 atttaagtca attttatttg aaaataagag gagtatttaa taatttttgt tgactttaat
      721 gtaagtgtat attacattta agtcaatttt atttgaaaaa attctaaaat tgctacctat
      781 tgacatagat gtgatacttt ggtataattt atttcgaaga ttaaaatatt tggttacatt
      841 taagtcaatc ttatcatttt ttaatacaag gaattagatg ctattaaata ttattattga
      901 aaaagatcag gatggatatt ttgcacgcat tctagagctt gaaggttgcg tttcgcaagg
      961 aaatacctat gaagaaactt tagctaatat aaaagaagct ggggagcttt atttagaaag
     1021 ccttgcaaat gaagaaaaaa gaattattga aaacaaaaca acttcaatta ttccaatggt
     1081 tttagcaaat gcctgaattg cctagaatga ctgcaaaaga agcggaaaag cttttattgc
     1141 aaaataattt tttgattgat aggcaaaaag gcagtcatag aatctataaa aaaggacttt
     1201 atagaatggt tattcctcat catattggag aaatattgca ccctaaaatc ataaaacaac
     1261 tatttgagat catagaagta gcaaaggatt aaaaaatgcc aaaaagaaat actattgata
     1321 ctattacact cggacttttt agtgatgaag atgtttctat aatctgcgaa gatacaatta
     1381 aactggaaag gggctctgta gctgtattaa gtggcaatag tgaagtaggc aagtcttttt
     1441 tagctttaaa ggtatgtgct aatgctatta atgatggctt aaaacctttt ttttggagtg
     1501 tagaagataa aaataaagca attttaggac gcataaaaaa tattgaaagt ttttattctt
     1561 ttaatactgc ggaacttgaa ttttcgaatg aacttccaaa aatcaataaa gaacctataa
     1621 attgcttaaa agaagaactt aatgagttag cagattgcga tttaattgtt cttgatacct
     1681 ttagtgcatt tttctcaaca ttaggcttta aagatcaaaa caatcaaaac gatgtgcaaa
     1741 atttctttaa tattctaaca gatatagcaa aatcaaataa tcaagctatc ttattacttc
     1801 atcacttaga caaaaaaggc gaaagtctta tgggtagctc tgttattatc aatgctccta
     1861 gacttgttta taaactttcg ttcgaaaagg gagaagataa aaattctacc acctatcgct
     1921 tgcttgaggt gctaaaggat aataataata tcaatgctgg agaatttcaa aaaacgatta
     1981 aagtattgca aaattctagt attgatgagc cttcaattgt aaatcttaga gctaacagca
     2041 ttgattctaa tactttagag attatcaata aaaaagatat ttctgctgta agtgttaatg
     2101 aattagcaaa aggctatgta acaatgaatg aaaatagagg tgttttttat ttaagctcac
     2161 gaaagcttac agacactaat ttttataaag tatttaaaga aaatgataat aaaatagatt
     2221 ttaaaatgac aggtgcgaat gactcatcat atgtcataag tttaaagaac tctttgctta
     2281 cgcaaacgca taggaatatt ttagatgctt tatttttata tatcaaaaaa aatgtggata
     2341 caagtgttat taaaaaatat caagaaaatt tttgggatat ggaagtaaga ttagagcctt
     2401 ataaattctt gaaacaatat cttaataaaa attctaataa ttactcttgg ttgaaacaaa
     2461 aatttacaga aatctctcgt tttgcgtatg atttggcttt cactcaaaat gtagaagata
     2521 aagataaaaa aacaatcact caaagagata aaggtatttt aatgtttgac tctgtagagc
     2581 gtatcacaaa agaaaatgga acaattgtat ctgtattcgt gctaacagtt cgtagagaat
     2641 atattaaaaa actcgaaaca gaatctaccc tttcttatga tgatgattta tccaaaattc
     2701 ttattaattt aaattctttg gtggcacaag atttgattag atttttaaca agttttcctg
     2761 ataagaaaat tcttagttat agtgagtttt gtgaaattaa agcttataga ttttataaag
     2821 aaagttctat tatttcgaaa caaaagaaag agattgttaa attaaaagat aaacttatag
     2881 aatttggaat taatgtttat ggcaaaggcg tagaatttgc taattatgat gatgaatttt
     2941 ttcataataa gtataaaaat gaaaatgatt tatttttcat ctatgaaagc aataatagag
     3001 taaaaagata tattaagcgt agtgatccaa tgaatcaatt aaacaccaaa agcaataaat
     3061 ttcttttgca aaaatcttta tttgattaac atttacaatc aaggagtgtt gtatgaatga
     3121 atgggaatta gaaagacaaa gacaaataag atagacaaat tgagcgtttt attttattac
     3181 aaaatttttt atatttttct taaatgaaaa tttagcttcc ttttaatttt cgttttttga
     3241 taaaccacaa tagaccatca tagctttttc cattatcttt gtataataac ttccaaatac
     3301 ttttaataga taaatcttta tcaagcaagg tttgtatttt atctatatcc ttatcataaa
     3361 tactatttaa tgagccttta gggcgtccca gtttttttcc actagctcta gcattttcta
     3421 gtcctgcttt agttctttga cttatcaaat ctctttcatt ttctgctaag taagcataaa
     3481 ccgataagat taatttagaa gcaggattat taaaattact aagttccatt tgtcttaaaa
     3541 ataagaattt aatattatta gaattaaatt caagcactaa attaattatt tctaacatac
     3601 ttctaccaag tcttgaaagt tctgttgcta ttaataaatc acctgctttt agtttttgtt
     3661 ttaaatcctt gatttttctt ttctcttgag attttgtaga acttattttt acttccaaaa
     3721 tttcatccaa atgaatattg tttttatgac aatattccat aatttctaac ttttgagagt
     3781 ctaattcttg tttatttgtt gatactctta tgtatgctat attcatcgtt ctaaatcttt
     3841 taacttttga ttttttggtg ttttttcagt aaattcttta agtttttgat gaaaatcttt
     3901 agcacataag tcttgtatag tctcttttaa gctatactgc tctcctattt cagtaatatc
     3961 aaactcttta acacattcgc caagccaagt aaatttttta gtgagcttat taactattct
     4021 tataactcgt ctttcattta ttggctcttt tgaagtataa cctgaatatt gtctatgctc
     4081 gaaaccattt tcaagcataa attttttaat caaagaataa ggttctcttg tatctttgaa
     4141 atatttttca agactttttg tagataaatc aaaattaatt gctttgcgat ttattcccaa
     4201 attccttctc cttcagcttt acttgcagaa attaaatcgc tatttccttc tttttcacta
     4261 atccaaatcc attcttttgc attttttgta aaccattcag aatcaatcaa atatttatat
     4321 ataaataaag tcatacaacc taaatcatac ttatcccctt tacaatgata agtttcttta
     4381 ttaattttta tcattcctga ttctttagca tattcatcta tcattttata catatcttct
     4441 aaattatatt tgccttcttt taaaatcttt tcttcatcta atactattct tgtacctaaa
     4501 agtgggtatg ccattttttt atcctttcat caaaaaccta acaaattcta gtaaaaaata
     4561 gctaatactt aaataaaagc ttttgaataa tattaattta attataaaac taaatttaat
     4621 ttatttatta aatacaaatt taagacataa ataaaacgct caatttttta acgaaaggat
     4681 atggatgaaa aaaaggctat tatcattaat tttaatcagt cctatttttg catttggtgc
     4741 tggcggtatt gataaagtta atacctttat gcaaaactta agcattgctt tgtatgcact
     4801 tggtggagtt ttactcacaa ttgcacttat gtggggtgct tccaaaatta tgtatcaagg
     4861 gcaaactctt agagaagttg cacctgtttt tatcggtggc gttatttttg gatcagcttc
     4921 ggcaatagct ggttatatca ttacataaat aggactagct atggagaaaa atccactttt
     4981 taaaggttta acgcgtccac ctatgatttt tggcgttccg atgacacctt ttgttatagc
     5041 gatgggatgt atcattttaa ttgcatttta tagtcaaaac atttttttag ttggcttttc
     5101 tattcctgtg ttttttatca tgaaagcaat gacaaaaaga gatgatttta tttttcgatt
     5161 aatgttttta aaaatgagat ttttctccaa tcctgcttcc aaaaattatc ataaggttaa
     5221 aacttacagc acaaactctt atagacaaat gccgccaaat tctaattttc caaaaatatc
     5281 tgttttcgga cttaatgcag aacctagttt tgaaaaatta attccttttt catcacttat
     5341 aaatgattct gtagtcatta caaaagatta ttttttaatg acaacttggg agattggagg
     5401 aattagtttt gaagcagaag aagatgatga actagatatt aaaaatgatc ttttgaatat
     5461 gctttttaaa tcttttgcta acgaatctgt aagcttttat tttcataatt gtagatattc
     5521 tatcgaagac aaattaactt caaaatttaa taatgctttt ttagaagaaa ttgacagaaa
     5581 atattatgag agttttaagc aaggaactct tagaaaaaat tctttatatt taactcttat
     5641 tttcaatcct ttaaaagtga aaatagaaaa aacaactttt atgaaaagtt cttttgaaaa
     5701 taaaagaaaa acaattagcg tatttttagc taaatttagc gaatttgctg atagactaga
     5761 agcaaatatt aaagatttta acccaaaaag attaaaaaca tattccaaag atgataaaac
     5821 ctactctaaa caactagaat tttataatta tttacttggt ggtaaattta atcctataag
     5881 agtattacca agtcctatag aacagtacct taatggcaat ttacaaaaca tacaatttgg
     5941 acacgatact attcaattta accaaaatga tagcacaaaa aaatttgcta gatgcattga
     6001 aattaaagac tatacaaatg aaacttttgc aggaatttta gatatcctaa tgtatttaga
     6061 tgtggaatac actgtaactc aaagcttttc tcctattcct agagtggatg caaaatcagc
     6121 aatatctaaa cagaaaaaac aactcattgc aactgaagat gatggatttt cacaagtaga
     6181 gcaaatagat gaagctttgg atcaacttac aaatggggaa atctcttttg gcaaatatca
     6241 tttttcaatt cttgtgtatg gaaatactat aaaagaatgt aaagacaaca caaatgaagt
     6301 tgttacaaag atgaacgaat taggatttgg agtaacttta gcaacgatcg ccctacctgc
     6361 gacatttttt tcgcaactac catcaaactt tgctatccgc ccacgcatta atcttatctc
     6421 atccattaat tattcatctt taattgctct acataatttt tctatgggca aaagagataa
     6481 aaactgctgg ggtgacgctg ttagcatttt aaaaacacca aacaaacaac cttattattt
     6541 taattttcac caaagttctg gtgcaaataa aaatgatttt ggaaaattct tcctagcaaa
     6601 tactttgatt ttaggtcaaa gcagtggcgg taaaacagtg tttatgaact ttattgtaga
     6661 tcaaatgatg aaatacgcta gcaaagatac atttcctgat gatattcctg aagataaaag
     6721 aaaatttaca gccatttatt tggataaaga taaaggtgcg ttaggcaata tactttgtgc
     6781 tggcggtaga tatattagca ttgaaaatgg caagccgaca ggatttaatc ctttcatggt
     6841 tgaaagcaca caagaaaata taagacaact tcaatcgcta atgaaacttt tagtaactag
     6901 aaataatgaa attcttacaa ctagagaaga agaaatgctc aataatgctg ttaattctct
     6961 tatgaaaggt tttgaaaaag aggaaagaaa gtatcctatt tctttacttt tagaaaactt
     7021 aactgaaaat gtagatgatg ataattctct taaatcaaga ttagcacttt ttaaaaaagg
     7081 caaacaattt ggctgggtat ttgataacga atacgacaat ttagattttc ctgacgatat
     7141 caatttattt ggaattgatg gaacagaatt tcttgatgat aaagatgtat cagggatatt
     7201 aagctattac attctttggc gtgtaatgag cttggcagat ggtagaagac tttgtattga
     7261 tattgatgaa gcttggaagt ggctagaaaa tgaaatcgtg caagaagaag ttaaaaacaa
     7321 gtttaaaacc attagaaagc agaatggatt tttaagactt gctacacaaa gtttagaaga
     7381 ctttttaaag cttaaaaatg ctgcaactct tatagaacag tcatcaacta tggtattttt
     7441 atctaatccg aaagccaaag aagaagaata tgttaaagga gtaggtttaa gttatgatga
     7501 gtatatgatc attaaaggtt tcaatcctgt gaaaagacaa tttttaatca aaagacaaga
     7561 tgaaaaagta atttgcactc ttgatcttag ccctttgggt aatgaaaatt taaaaatatt
     7621 atctacagaa acagcataca ttgatgtcat tgaaaaaatt ttttcacaag aaaataaaag
     7681 tcttgatgaa aaagtattag agctgaaaga aatttataaa aactcatagg agatgaaaaa
     7741 tgagtaataa agtgattatt aataaacaag aagtgcaatt tgacactcaa aataatcaaa
     7801 tcttttgcac aagtttagat gtggctaagg tttttggaaa aagacatttt catgttttaa
     7861 gggatattga gaacatttta aacgatttgc gagaaatagg gacttctcaa gacctatcca
     7921 attttgggga gacctacaga aatactgaaa ttaggggttt tggcaaagtt aaagggaaaa
     7981 caagaaaaga tcgttgttat aatctaactc gtgatggttt ttcactttta gcgatgggct
     8041 ttacaggtaa aaaagcatta caatttaaaa ttgcatttat taatgctttt aacgaaatgg
     8101 aaaaactttt acaaaaagaa attaaaagcc ctaacaaata cttaacagat ttgatggaac
     8161 ttatttatcc aaacttacca caaaacgatt acaaagttag tgtgattatc acagataacc
     8221 cttattctaa agaagctaaa aatgtatttt ctttgaatta tcttgttgat aatcgcacac
     8281 caaaagatcc aaagaagttg caatgagtga taaagaatta caaaaagaaa tattagcttt
     8341 agaaaacgat gttaagcaac tagaagcaac tattgatgta attaaacaaa gaatcactca
     8401 tcttaaagat attgcttggg atagacaaag taaaaaagaa agttctcaaa tgtataaagt
     8461 gttaaaagaa gataaaacac atacaagggt taaaagtaat gtaggagata ttaaagtaga
     8521 taaagacttt atggataaag aaattaaaaa acatttagat aatccaaatt taagaggaat
     8581 ggttactaca caagagatgt tatcttttcc taaggtggct aaaggtgtgg aagctaacaa
     8641 cgaagcaaga ggctatactt ggcaagtaaa agcaaacgat ggaaatactt tagtttatgg
     8701 aagtagaaaa tatgaaacca ataacgaaaa aattcatagg ttagcgacaa gccatagtaa
     8761 aacagagaag aatgaaagac aagcggaagt gggtgggcgt agtcatcccc accatcccat
     8821 atttaatgac ttcaattttc gcaaatccgc tgaaaatatt atatcacaac aaaacaaatc
     8881 cacaaatgat tttaaagcaa aattagaaga atttagcacc aaaaaaacaa atgcaattga
     8941 atctataaat aaggagttta aaagatgaaa aaatattaca ccaacaaaaa ggagttaaac
     9001 aatgaataat gtaaatctaa tcggatactt aggaaaagat tttgaagtag gcactacaaa
     9061 tagcggaaga gtttatgcaa aaaattctct tgcaattaca aagcgatgga aaaatgaaag
     9121 aggcaatgaa gaaagtagca cgacttggat acctattgtt ttatttggca aaagtgcaga
     9181 aagtgcatca acacacatta aaaaaggttc tcagtttgcg tgtagtggag aattatcatc
     9241 caatcaatat caagatgaag atggaaatac tagaacaatg ctaaccgtga ttgtatctaa
     9301 attttattgg cttggcaaaa aagataaaga tgacaatgga acacaaaatc cacaagtccc
     9361 accaaaagag ccaaatattg attatgaaaa cacaaatata gaatctgaag aaacacaagt
     9421 attttaagat ttaaggataa aaatgtctat aaaaaattta agtgtagaag aattagcgca
     9481 agaattagaa acttcaaatc atgaaaagct gattaaagct ttgtttttat ttgaaaaaaa
     9541 ttcttcaatg gaagatctta attcagatca aatagaaata attttagatg aagtatatga
     9601 attttatatc aatcataaat ctatatcttc ttttttacaa gaagatataa accaagcatt
     9661 agataaagct attgataaag agctttgcaa aaaacaagaa aaatcatttg aaaggtaaaa
     9721 aatgaaaaaa aatatctttg gtgttaataa agccataggg aaatctcatc cccatgaaaa
     9781 tggggcaaga ctaataagcc ttgactataa ttatacaaag gagtataatt ataactatga
     9841 gatttgtgta actcaattta accacctctt ttctgaggtt aaatttagcc acagggttgc
     9901 agccctatgg ctaaccccac aaaattatat ccaaaaattt aaaaaatcta ttcttattct
     9961 tacttcctta ttagttttgc ctaacttagc atttagtgct ggtattcctg tagttgatgt
    10021 aacagcaaat cagcaaatgg ctacacaaaa cgctaaacaa gtggcagaat gggctaaaga
    10081 tgcttcaaga tggactgaaa cagtagcaca ctatcaaaaa caaattcaag cttacaaaga
    10141 tgaactttta tcaaaaacag gcattagaga ttcagtaact tttctaaaag atattaaaca
    10201 aatatattca gattttgctg aagttgggca aaatattcaa tcattttaca atgatgtatt
    10261 aagagatcca caaaaatttt taagtgataa aggtaatgaa atttttggaa aatatacgag
    10321 ctttgatcga tgtaattttg attttttaag tcaatcagaa aaaaacattt gcaaaatgaa
    10381 tttaatcact tatgctgctc aagtagaaac ctataatcaa gcttcaaaac aaatggatac
    10441 gattagtcaa acactccaaa aattgcaaga taaattagta aattccaaag atattaaaga
    10501 aagcacagat gttggcaatg ctattcagtt ggaagtggca aaaattcaaa tggttaaaaa
    10561 tcaagttgat ttagccaatg caagttatga aaaccaaaga aaaattaaag aagatatggc
    10621 tatgcaagaa tattctaagt cgttacaaaa gccacgagaa agtgctatgg aattttttaa
    10681 gaacaacaaa tgaatttaga tctttttcaa actctaggta aaagcataca acaaattgtt
    10741 gatgctataa gacaagtagg cacaaatgat aaggttgcag aacttagcgt attgctttct
    10801 attattatca ctttagtcat tatgtataaa ggctacgaag tcttaatggg tagaagtcaa
    10861 agccctatta gagaattaac ttgggatata gttggaaagc ttgttgccat tacttttgcc
    10921 ttaaatttag ggggttggct agatttaaca atttcaacaa tggatggatt atacgagtgg
    10981 gcaggaggcg gaacgcaaat gtataaaaca ctagatgaaa tgtatgcaaa cacagcacaa
    11041 cttacaaaca taatttgggc taaatcaagt ggtgttggag gtgctatttt agctattgta
    11101 gcaatgctac tttgttatgt aggatttgca attgctgtag ttcctgcact tacaatcttt
    11161 gttgttacta ccttcacaca aacactgctt gtaatcaccg cccctatagt attttggctt
    11221 ttagttttta aagccactaa aaatgttttt acacagtgga taggactttt actttcaaat
    11281 actttagtca ttttgcttgt aggcttattt ttgggtgttt ttatggagca aatatcaact
    11341 tggattaagt attttgcaaa agtaactcaa gcaggagacg aagtattagg cacaagtatt
    11401 ttctttgtca ttgccgcttt agttcttgtc attatgatta tttctgcaaa actttatgcc
    11461 gaaaaagttg caaatgtttc aatggaagga gctatgggcg gagtaatagg ttctgtttta
    11521 aaccctgttg gtagattagc aggttgggct ggaggcaaag tcgcaggaaa aactgtaaat
    11581 acagcaaaag ctggtggaaa attagcagcc aaaggtactt tggctagtgc taaaggcggt
    11641 tatagttttg ctaaaaaaat gtatgaaagg gctagaaatg caggctaaat taatttttat
    11701 tttattactt ggtgttttat tttttagtgc ttgtagcact aaaaatcagg gtaaatatga
    11761 tgaatttttt aacaatcaaa caggatggat tcctgttaat actcaaaaca aagatttaaa
    11821 taaaggaact atggatgaaa aatgagttta atactgcaat agattatgaa gcaagtttta
    11881 gatacttaat tgaaaaaagt aataaaagag cttggcttat tgcttttatt tctattttta
    11941 tagccattat ttccattata gctgttgttt tacttactcc tttaaaaaca atagaacctt
    12001 atgtaataag agtagacaat actacaggaa tggttgatat tttaaccatg cttgatgaaa
    12061 aagaaattaa agcaaatgaa gcattagata aatattttat tagcacttat gtaaaagcta
    12121 gagaaggcta ttattatgat cttttaaatc aagattattt acttactcaa ttaatgagtt
    12181 ctgaaaaagt agcaaatgaa tatagggctt tatatgaagg tgataatgca agagatcaaa
    12241 ttctaaaaaa ctccaatgaa gtaagtgttc aaattttaag tattgtttta ggagaaagta
    12301 acggagtgaa aactgctaca gtcagggcaa ttattactac aaaaaattta acttccaaag
    12361 gaacaactca agcaacaaaa gtaataacat taagttatga ctatatctta gcaaaagcta
    12421 gcgaagaaaa cagattttta aatcctttag gttttaaagt attaacttat agaattgatg
    12481 acgaggtggc acaatgaaaa aaataatctt gataaattta ttgttgtgta gttttatttg
    12541 ggctttaaat attccaaaaa cttctacatt tgataaaaga attgcttatg caatttataa
    12601 tgcaaacgat gtatttcaaa ttaatgcaaa aaatggctat gttagcgttt tagaatttgg
    12661 taccgatgaa agaattatca atactgctac aggttttgca gaaggttggg atttaattga
    12721 aaaagacaat cttttattta taaaacctaa agcttataaa acacaacttg ttcaacaaga
    12781 aaacaataat ataggagaga gtcaagcatc acaagaattc gttttagatc caaatcctca
    12841 tgattggaaa actaacctaa ttgttattac aaatctaaat acttatgtat tcgatttaaa
    12901 acttgtaaac caaaataata acgctaccta taaactcagt ttttcttacc ctaaaaaaga
    12961 tttaaaagcc gctaaagaat ttttagaagc acaagaacaa gaaaatatac gcagagattt
    13021 aaataaaaat accattccta gaaattggga tttttatatg aaaattaaca aaggtagcga
    13081 agacataagt ccaaattttg cttatgatga tggtgttttt acatatcttg gttttgataa
    13141 tactaaaact tttcctgctg ttttcatgta tgataatggt aaagaaagta ttttaaatac
    13201 tcatattaaa aaagatggca attatgaagt tttagtaatt caaaaaatta ctaaacaaat
    13261 cttgttaaga agtggcgata aagtcgttgg tatttttaat cgtggctatg caaaaaatcc
    13321 tttagataaa acaagagaaa cctccaatga aaatattcaa agagagataa ataaaaaata
    13381 aaacgaatga aactaaaagg aataagtatg caagataaag aacaagataa tttagacaat
    13441 gattttgaaa atcatacaag tgatttacac gatcaaaaaa atcatcttag aaagatacaa
    13501 gcttatgtaa tttttgctgt gggtggatta ttattagttt taatattagt ttatttttta
    13561 aaatcatttt taagtagcaa tacaactacc gaagaagtac aaaaagaaga taataaagat
    13621 ttggcacaaa gtgttaaaac aaaggaattt attccacctc ctccacaaaa aacatttgat
    13681 gaactaattg cacaagaatc accaaaaccg acacaagatt taatacttga acccaaacct
    13741 ccaaagccta gaattgttaa aggtgcagga gttactgttg tcgcttcatc taataatgat
    13801 ggatttggaa ataatggcac aggaaacagg gaagaatttg gagaaaaacc taacacagtg
    13861 tttgagtttg gacaaaatgg ttctttacaa aactctaata atttacaagg tggtagtaat
    13921 ggagattttg ttggagaggt cttcactccc acaatcgcta aagttagcga atttgatcaa
    13981 aatttactat tacctaaagg aacttacata ggctgtgctt taaaaacaag attggtaagt
    14041 tctattaaag gtggaatcgc ttgtattgta tcaaatgatg tctattctgc taatggaaat
    14101 actcttttaa ttgaaaaagg tagcactatt acaggaactt ttaatactgg acaaatggat
    14161 gatggaatgg atagattatt tgtaatttgg caagaaatta gaacaccgaa caatatcatt
    14221 atccctgttt attcaggtgc taccgatgaa ttaggtgcaa gtggcgttca aggttgggta
    14281 gatcatcatt acttaaaacg atttggctct gctgttttac tatcaatgat agatgattca
    14341 ctggctatct tagcggatca aattgcaggt aaagataata aaaataatta tgccaattac
    14401 actgaaaata caagagattc tgcaaaagaa atcgcaaata cagcactaga aaaaatgatt
    14461 gatattaaac ctacacttta taaaaatcaa ggtgatttgg tcggtgttta tgttaatcgt
    14521 gatattgatt tttcaaaagt ttataaactt acaaggaaaa agaatgtcaa taacgctaga
    14581 taaatatact caaaaatttt ttggagaatt tttaaaagat gataatatca atgaaatctg
    14641 ctataacggc gataataaaa tttgggtaca aaactctaaa ggattatggg aatgtataga
    14701 tactaaactt gattttgaac aagctggaca ttttgcaact gcttcagcct cattcaaaaa
    14761 agataaaata gatgtatcac gccctattct tagttgtatt ctagtaggtg gagagcgtat
    14821 gcaaattgtt attcctcctg ctacaaaaag cgaacacatt tcaattacta ttagaaagcc
    14881 aagcaaaact cgctttaaaa tggaagatca tattaaaagc ggactttttg aagatttaaa
    14941 tcctgatgat aagaataaaa tcaaaccaag cgatgaagaa ttaatcaagc tatatgaagc
    15001 aagagattat caaaatttta tatccaaagc tgttagctat ggtaaaaata ttattatcgc
    15061 tggtgaaaca ggaagcggta aaactacctt tatgaaaact cttattgatt ttataagcct
    15121 tgatgatagg attatcacaa tagaagatgt tgaagaaatc aaattctatg aacacaaaaa
    15181 tttcgtgcaa ttattctatc ctagcgaagc aaaaagtaca gattttttaa attctgcaac
    15241 acttttaaaa tcttgtttaa gaatgaagcc tgataggatt ttactagcag agcttagagg
    15301 tgctgaaact tatgatttta ttaatgtttt agctagtggt catggtggaa gtatcacaag
    15361 ttgccatgca ggaagccccg aagaaacatt tacacgactt gctttaatga ctctacaaaa
    15421 tccacaaggt caatgcgtgc cttttgaaat tatccaaaaa acacttaaag acttaataga
    15481 tattgtcgtg catatccatg cccatcatgg aaaaaggcgt attagcggca tttattttaa
    15541 agaaatggag agataaatgc aaaataataa aagcattcaa atgatttttc ttgctatagc
    15601 gagttttatt ctcacttact taataacgcc cattgttttt ttctttttaa ataaagtaaa
    15661 aataatgaaa gcgattgaaa tttataacat aaattttacg ctacaagcaa tctctaatgg
    15721 ttatccaaaa atatggcttt ctttaggtat tacttttggc atttgttttg ttgttttttc
    15781 tgttttggtg ttatctttaa aagccaaaaa atctcaattt ggcgaagcta gatttgcaaa
    15841 ttttaatgaa attaaaaaaa tgaatttatt ttcagataat ggaataatta tcggaaaata
    15901 caagggaaag attttaagat ttagcggtca gcaatttgta gccttaggag cacccacaag
    15961 aagtggtaaa ggcgtaggta tagtaatacc aaacttgtta gagtggcgag aaagtgctgt
    16021 tgttcaagat attaaacaag aatgttttga ctacacaagc aaatatagaa aagagatttt
    16081 aggacaagaa gtttatttat tcaatccatt ttcaagacag acacatcgct ataatccttt
    16141 aacttatatt gatatgagtg ataaagagca ttgcgatagt caattaatgg atttaggtaa
    16201 catactctac ccacaagatg gggattctac ctcaaaattt ttcaatggct tagcacaaaa
    16261 cttatttatt gggctttgtt atttatggcg tgatttacaa ttaaccgatt atggaaaaga
    16321 atttcaaagt gcgtttgata ttaatgtagg agaatttaac ttttacaata ttttgcaact
    16381 ctcaaaaggt ttctcactta aaaatgaagg aaaaacttta aaaggatttg atgatacata
    16441 caatttctta tcttattgtg aagttttaga tgaagcaacc ataaggcgtt tagaaactta
    16501 ttttaatatt aactcagatg ctactaaatc aggtgtaatg agctctttta atgctccgct
    16561 tgtgccattt gaaagtgaaa cattaagatt aagcacagaa acaagcgatt ttgatttgcg
    16621 agatttgcgt aaaaagaaaa tgacaattta tataggaatt acgcctgatc aattagcaaa
    16681 tgcacaattt attttaaata ttttttggtc gcaacttatt ttattaaaca ccaaagaatt
    16741 gccacaaagc aataaagatt taaaatatac ttgtttaatg gttatggatg aatttactgc
    16801 acctggtaga attcctatct atcaatcagc aatcagtttt atggctggtt attggttaag
    16861 atctttgatg atttatcaat caaattcaca acttgaaaca caaccacctt tgggctatgg
    16921 aaaagaagga gctaaaacac tcttaacaaa tcatgcttgt cagattttct atgcgccaag
    16981 agagcaagaa gacgcagaag ctatctctag gattttagga aatactactt ttaaaacaaa
    17041 atcaagaagt attaatacag gcaataatgg aggtggatca catagtatta gcgaagcaag
    17101 tagggcttta atgttgccac aagaacttag agaaatgcct tttgaaaatg aactaattac
    17161 tattgatagt ggaaaaccta ttttatgcaa taaagcattt tattattcag attcttattt
    17221 tatggataaa tttaaagctg tttcgaaaag tttatcaaca ataagaaaaa tcccttcacg
    17281 caaacaatta gaagatgcga tcttaaaggg agaatgtaaa gtaaaaattc aaattatagg
    17341 agaaaacaat gataaaaaaa tcgcttgaca atttagtcat aatggcttta gtttttataa
    17401 tggtgggttg ctctacagcc ccaaaaccaa aagaattgga tgataattct gcattgagta
    17461 tcaataattc tattttggag aaaaaatata gctttgttcc taaagatcct tatttgagcg
    17521 gatttaattg gacttatcat atcgtggttg agaaaaaaac tatagatgat gattttatta
    17581 aaaatgatct tattactaaa acttttttac tcgcacacaa ttctacaaaa atcattttag
    17641 taggtagaaa agatttaatt gaacaatata agcaatactt tgaaaaaaat caagttttag
    17701 cacctataga attacagcct gtcaatccta ttgagcgtga ttttaacaaa gttaatattt
    17761 tattttttaa taaaacaaat ttttaaagga gagaaaaatg aaaaaaatat tattcccatt
    17821 ttgtgttttt ggtgtaataa atagtgttaa tgctttagat ttgcaattac tatctggtga
    17881 tactagaact tcttgcgaag taattctttg tttagcaagt ccagttaaac cacctgaatg
    17941 tgcatcttct ttagcaaaat attttagcat tcactttaaa aaaccttgga aaactatcca
    18001 agcaaggaaa gaatttttaa atttgtgtcc tattgacaca acaaatgatc cagaaatgta
    18061 taaatataaa aatgatattt tagttaactt agatggagaa tgctctacaa ctgcattaaa
    18121 tcaaagaatt gaaaaatcaa aacaaccttt aaaagttgaa aaaatatgca ctggtggtgg
    18181 gcataatgga tcaagagaat gcgtagaaat aaaaacttat ggatttagaa taaatcctga
    18241 acttacaaac tcttgcaaac ttttagcttc atcaaaatac acagattatc atttaaaata
    18301 tacttgcgat aagaaatttt atgagcaaaa agattgggaa agaggttatg aattaaaaga
    18361 agtatcacaa gaaatttata atgctttacc tgtatcgcaa agagaacaag gagaaaaatt
    18421 aactcctata agttatggag aatttattaa actacctgct aataaaagaa aacaagaagg
    18481 atttggcaag tattatagaa tcgatattgc ttattatcaa aaaataatta ttaaaaaaga
    18541 ttgctggata aacgagaaat aacaatgaat gaagaaatta attctaacga aaataatctt
    18601 tttgaaatag ttaatgaaga taattcaaaa aatatagcta tgcaaaacta taatgaatta
    18661 ttggaaaaat ttgaaaatct tataaaaata attattgcta aaattaatgt tggtaagcaa
    18721 aatgcacaaa ataatacaga agatggtatt tttaaagatt tagaaagcaa tattatagag
    18781 ctagataata cctatttagc tcttatttct tattttaaaa atcctcctaa tgatgaagag
    18841 aaagaaatta ttaataaaac catttctatt aaaaaaacaa tggaagattt tgctaaattt
    18901 gctaatgaaa ttcaaaaaat atcattggat gataaactta aacaatataa cgagcaaatt
    18961 aataaatttt gcgaaatagt agaatataaa ctttctcata atgcaaaaaa ttataatact
    19021 tttcttgatc attttgttga agatggaaaa caaaaattga atacattttc agaaattttt
    19081 acaaaaatga caaaaaatac aaaatggtat cttatatttt ttagttttac ttctataggg
    19141 ttaggtatag ctcttggcat tttaattttg cttacttata taaaatattc agaatataac
    19201 aatttaaaag aaagagtaag cacaatcact caaggtttag ccactatctc tattgatgaa
    19261 aatagtaaag gaagctttac cttgagcttt gcaaaaaaca aaaaaactat tttcaatgag
    19321 aataaaaata gtattcaaat cacactacaa ggaggtgaat gaacagaaca attatataca
    19381 aaaaaatgca aaaaacaaaa acaaatcata aaaaatttaa aaaggagaaa aaatggcatt
    19441 tggaaaatta gtaaatgata agattgttat tgataccaat aatgctttaa actacaagaa
    19501 taaagaaggt gatattcaac aaagaaaagt agatactgct ttaatcgatg ttattaaaga
    19561 agctggacaa gttgctgcaa tggaacacgg agctgtgctt ttttcagcaa aaataaatga
    19621 tgagtggaaa aactattttg ttaatagaga tgaaaaaact cacaatatag ttttaaaacc
    19681 tacaaattca caaaatagag atgatttcat atatatcaac tctaacataa atgagcaagg
    19741 ttatttttac tacacaatta atcaaaagcg agaagctgca aaagaattaa ttgaaggaat
    19801 tgggattata gaacaccaaa accaagatgg aactaaaagt cactatttag aaactaatgt
    19861 aaggctttac aatgaagaat taaaacagga acttaaagaa aaaggtaatg agtttatagc
    19921 tgtaatttca aatgctggaa ttagaattgt taatgaagct gaaatgaaag cacaaaaaca
    19981 agaacaacaa atacagcaaa ctcaagaaat taaagagcct gaaaaaactc aaaaccaaga
    20041 gtttggaaga taaaaatatg cacctcataa aggtgcatat ttatagttat tattatttat
    20101 taatagtaac tataaataac aaatttaaaa gttatttttt gacaaga
//
LOCUS       DARGEX010000019        19416 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.019, whole genome shotgun sequence.
ACCESSION   DARGEX010000019 DARGEX010000000
VERSION     DARGEX010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.019"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            122..877
                     /locus_tag="SF010_000561"
     CDS             122..877
                     /locus_tag="SF010_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8229514.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(901..1539)
                     /locus_tag="SF010_000562"
     CDS             complement(901..1539)
                     /locus_tag="SF010_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG8229515.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1536..2525)
                     /locus_tag="SF010_000563"
     CDS             complement(1536..2525)
                     /locus_tag="SF010_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229516.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYFLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2529..3308)
                     /locus_tag="SF010_000564"
     CDS             complement(2529..3308)
                     /locus_tag="SF010_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229517.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVSPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNMGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3309..4148)
                     /locus_tag="SF010_000565"
     CDS             complement(3309..4148)
                     /locus_tag="SF010_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEG8229518.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLAITFIANFLSKKYNF
                     KVL"
     gene            complement(4145..4955)
                     /locus_tag="SF010_000566"
                     /pseudo
     CDS             complement(4145..4955)
                     /locus_tag="SF010_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
     gene            complement(4952..6277)
                     /locus_tag="SF010_000567"
     CDS             complement(4952..6277)
                     /locus_tag="SF010_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG8229519.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6288..7334)
                     /locus_tag="SF010_000568"
     CDS             complement(6288..7334)
                     /locus_tag="SF010_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG8229520.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDIGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7451..8434
                     /gene="corA"
                     /locus_tag="SF010_000569"
     CDS             7451..8434
                     /gene="corA"
                     /locus_tag="SF010_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG8229521.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8455..8997
                     /gene="mog"
                     /locus_tag="SF010_000570"
     CDS             8455..8997
                     /gene="mog"
                     /locus_tag="SF010_000570"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG8229522.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAMCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8994..9179)
                     /locus_tag="SF010_000571"
     CDS             complement(8994..9179)
                     /locus_tag="SF010_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG8229523.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            9307..10494
                     /locus_tag="SF010_000572"
     CDS             9307..10494
                     /locus_tag="SF010_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8229524.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGVIIMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPILNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10491..11306
                     /locus_tag="SF010_000573"
     CDS             10491..11306
                     /locus_tag="SF010_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG8229525.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFNIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELELKITACDINPKALELALENAKLHKVDHLIDFKL
                     CHFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            11319..11789
                     /locus_tag="SF010_000574"
     CDS             11319..11789
                     /locus_tag="SF010_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG8229526.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFKIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11828..12577
                     /gene="flaC"
                     /locus_tag="SF010_000575"
     CDS             11828..12577
                     /gene="flaC"
                     /locus_tag="SF010_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG8229527.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            12612..13244
                     /locus_tag="SF010_000576"
     CDS             12612..13244
                     /locus_tag="SF010_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG8229528.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13256..16858)
                     /gene="dnaE"
                     /locus_tag="SF010_000577"
     CDS             complement(13256..16858)
                     /gene="dnaE"
                     /locus_tag="SF010_000577"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG8229529.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGIIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGTKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            17108..17293
                     /locus_tag="SF010_000578"
     CDS             17108..17293
                     /locus_tag="SF010_000578"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229530.1"
                     /translation="MAEELQSDFKDVEVEFEIGGRGDFIVEVDGKVIFSKTQLINCES
                     ERFPYQNEINQLIKNRV"
     gene            complement(17306..17635)
                     /locus_tag="SF010_000579"
     CDS             complement(17306..17635)
                     /locus_tag="SF010_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG8229531.1"
                     /translation="MKFYGIKNCNSVKKAIDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17632..18972)
                     /locus_tag="SF010_000580"
     CDS             complement(17632..18972)
                     /locus_tag="SF010_000580"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG8229532.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18996..19409)
                     /gene="uraH"
                     /locus_tag="SF010_000581"
     CDS             complement(18996..19409)
                     /gene="uraH"
                     /locus_tag="SF010_000581"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG8229533.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         6863 a         3268 c         2597 g         6688 t
ORIGIN      
        1 tatttaaata tcatctaaaa gcacaacatt aatataactt ttctaaaaat tgatccagac
       61 ttaattaaat ataaatttaa aataagtata attttaaaac attttatatc aaaggaaaaa
      121 aatgaaaaaa atattaagca ttgctctagt tgctttagtt ggtttatttt taggtgcttg
      181 tagtgattct aaaaataaag aatcaaatgc aagtgtagaa ttaaaggttg gaactgctcc
      241 aaattataaa ccttttaatt ataaagaaaa ctcaaaactt acaggttttg atactgattt
      301 ggttgaagag attgccaaaa aaaatggtat taaaattgtt tgggttgaaa ccaatttcga
      361 tggattgatt cctgccttaa aagctggcaa aatcgatatg attgcctcag ctatgagcgc
      421 aactgatgaa agaagacaaa gtgttgattt taccaaacct tactatatga gtaaaaatct
      481 ttatcttaag ctaaaaaaca acgactctct tcaaacaaaa aatgatttag aaggtaaaaa
      541 aataggagtt caattaggaa ctttacaaga aaatactgca aaagctatca aaaatgcaca
      601 agtacaaagc aataaagatt taaacatagc tgttttagca ctaaaaaaca acaaaattga
      661 tgctattgta gctgatcaag atactgctaa aggtttttta gctgaaaatc cagaattggt
      721 aagtttctac caagaaacag atggaggaga aggctttagt tttgcttttg ataaaaataa
      781 acaaaaagat attattgaaa tatttaacaa aggcatagat gaagcaaaaa ctgatggatt
      841 ttatgatact ttaattaaaa aatatgaatt agaataagcg tgaattttca cgcttatagc
      901 ttaaaaagtt aaaatttcat attttctctc ttttgcaatt tttaaaattt tttcatcgcc
      961 attacataca aaggctttgc taacagactc tagtaaaggt aaatcattga tagaatcact
     1021 aaaaaaataa gaatctttca tccatttttc ataatcttta cccaaatatt ccttaagtct
     1081 taaaaccttg ccttccttaa agctataaat cccataagct tttccactaa atttatcacc
     1141 cacacgctcg cattttatgg ctatgctttc tctcactccc aaaaaagagg cgatttttct
     1201 aactaaaaat tcagccgtag ctgaaattat aatacacctt tgatcttgat atttgattat
     1261 aagttcttta gctttttcat aaggttttat ataaattttt ataaattcat ctactaaaga
     1321 tgaaattcta tcttcatttt tacccttaac actttgaaga aaaaaagtca taaattcatc
     1381 catatcaagc tttttttctt gatattgttt ttgataaaaa acgatttttt ctaaatattc
     1441 ttgaggtaaa aaaccttttt caacacaaaa tttaagccaa agtttagcac tatcgccttg
     1501 tattaaagta tcatctaaat caaataaaac aagcttcatt ttaactcttt tgctaaagaa
     1561 agattgaatt ttaaagcgat tttatcacct gcttcataag tactatgagt gctaaaattt
     1621 aaagtatcta ccttaaattc aatttcttgc actctaaccc tatagcgtat gatattacct
     1681 agcaatgatt tttctttgat cttagcctct aagccttcgt tagaaatttc tatggtttca
     1741 ggacgcaagg ctatatcttt tttaaaatcg tgttttaaac ccaagctatc aagctcttta
     1801 gggcttaaaa tattgtaatt tcctataaag ctagccacaa aatgagattc tggcaaaaaa
     1861 taaagattgt ttgcgttgga attttgtatg attttaccct cattcattaa aataatccta
     1921 tcggataact ctaaagcttc ttcttgatcg tgcgttacaa aaatagtggt gagttcaagt
     1981 tctttttgaa tttctttaat ttgcaccctt aaatgcttac gaattttagc atcaagtgcc
     2041 gataaaggct catcaagtaa aagtaaatca ggtttagtca ccaaagatct tgctaaagcc
     2101 actctttgca tttgtccgcc tgaaagctta tgtggataag ttttagcgta ttcttcaagc
     2161 tcgacgagtt ttaacatttt tttcactctt ttttctatgt cctttttatc catttttttg
     2221 atctttaaac caaaagctac attttcaaaa acgttaagat ttggaaaaag agcgtaattt
     2281 tgaaaaacca tacctatatt tcttttttga ggacttaatt tggtaagatc tttatcattt
     2341 aaagaaattt ttcctccatt aatttggcta agccctgcta tacaccttaa aagagtggat
     2401 tttccacagc cacttgggcc caaaagggtt ataaactcac cctttttagc actaaaatta
     2461 atatcttcaa aaataatttt atccccataa gcttttttaa aatttttaat ctttaaataa
     2521 gccatttttt actccttaat caaactagct ataaaagttg ttataaaaat taacacaaaa
     2581 taaactatta ccaaagcact agaataatgc ccactttgat ttttgatatt ataaagataa
     2641 acttgcaaag tctcataagc acttcctaca agaatatttg catataaaaa ttcgcctatt
     2701 aaaaaagaaa aacttaaaaa aactgccacc aaaattccat ttcttaaatt aggcaagaca
     2761 agcttaaaaa tcgctcccat taaagaacct ccaagcatag cattagatgc gatgagttca
     2821 tttaaattga cattagacat agcattatct aaagccctat atataaaagg caaagctata
     2881 gtaaaataag taaaaatgag tatccaagct gtgcctccca tattgtcagc ataaagttgc
     2941 aaaagcccta cacagctaac tataggaggt acagcaaaag gcatgataat aagtatattt
     3001 acaaaggctt ttaattttaa aaaataataa tttagcacaa aaaccaaagg ggaaacaaga
     3061 atcacagaaa gtaaaatact gcccacacaa acaagcaaag aatgccaaag agcaagtaaa
     3121 aatctttcat catgaaaaag ttcttgatac catttaagcg taagatcatc aggcaaaaca
     3181 cttacacccc aagaagtgga aatagaatat aaaaaagtag ccattaaagg caaagctaaa
     3241 aataaaaaaa ccaaaaacaa aactgcataa tgataaattt tagcttttaa actcaaattt
     3301 tcattcattt aaagcacctt aaaattatat tttttagaaa gaaaattggc tataaaggta
     3361 atagcaagca tgataatagt tataatgatg cttaaagcac tagccatata aggatcaaga
     3421 ttgatatcgc ctgcgattaa agcagcgatt cttacagggg cgacattaaa atttcccgaa
     3481 cttaaagcat aaatagtcgc ataagctcca aaagcattgg caaataaaat cacaaaaaca
     3541 ccaaacaaag caggagcgag caaaggcaaa gctattttta accaatataa aaaattgcct
     3601 ccacctaaca ttttacaagc atttaaatgt gaattttcaa gacttttaaa agctggaagc
     3661 aaaagcaaga ttgccaaagg aatttgaaaa tacacataaa caatatttac cccgaaatta
     3721 gcataaacac taacaaaagg ctctatacct aaattcttca aaaacacatt aactacacca
     3781 ttgcttccaa gaactataat gaaagcaaaa gctaaaggaa ctcctgaaaa attacttatc
     3841 atagtattta aagaaaagag aaaattacat atttttgatg gagctaaaat aaataaagaa
     3901 tagctcgcca aaagccctat taaaagtcca aaaatactag aaataaaact gatttgtaaa
     3961 gaatttataa tgctttgtag atagaatttg gactcaaaaa tatgtataaa attggctaaa
     4021 gaataaattt catcctcttc tacataaaaa gcattaaaaa caatccaaat caaaggtgct
     4081 atcataaaaa aagtaaaaac tataaaaaaa ggtaaaatac ttaaaaaggc tagaaatttt
     4141 tctttcattt tctggccttt aaaatttcat cattatatct cttatcgtgt ttaagtccta
     4201 aaatttcaca gacactgcca caaatttcat cctgttttat cttagcattt tcatacgaaa
     4261 aagcactacc aaaagtgaaa aaaggcacta aaatttcatc ttcgcttaag cctccatgac
     4321 ttttaccctc tgtcatacca tgatcgcttg tgatgattac attaatacct tgttctaacc
     4381 aagtaggcaa atactcagaa atcaaaacat caactttttt ggttttatta gcatactcga
     4441 tagagtgtga gccaaattta tgtcctgcat catctatatt catagagtgt ataagagtaa
     4501 aatctagatt atatttgttt cttaaatgct ccccatctgc aaataaatga gaatctaaat
     4561 aatcatcttc ataataaaaa tgtccataag gtaaagttaa attttcatct tctatatggc
     4621 gatgtaaaga aggaataaat tcttttttat tataaagctc aaaaacccaa tgataagctg
     4681 cgcctccagc ttttaagcct tgttctttgc aaaggtcaaa aatgcttgtt tgttttgaaa
     4741 aactcgattt attattaatt atcccactta aaacaggctt tacgcctgtt aataagcact
     4801 cgtataaagg gacgagacat actaggaagt tcgcattcta aagaataaaa tttgcctaaa
     4861 ttctctttgc aaagtgcatt caaatatccc atatttatac tagtgctttt acaatttaag
     4921 ccatcaagca caactaaaat aactttggac atcatttact ctttaaaaaa tcttttactt
     4981 caagcaaaat aaactcatta tcatcagtct tattaggttc tctacttgaa gaataaggaa
     5041 agttattgtc attttctaca actatatgag agtcatctac tatatccaca ccttctatgg
     5101 tttcaaaagg aaaaacaaat ttatcattta ccaaaggctt tttagaaatt ttatttctat
     5161 ccttaatatt taaaagatct atataagaaa ttttttgagc ttcatgagtt ttatcatcta
     5221 atttaacctt ataaattctt ttaaattgag ctacattatt aaaacaatgc ttagtatctt
     5281 caccttcttt gcaagcctta tctttagtgc cttctttttg atctctttct atgatgatgc
     5341 cgtatttatc atctatcata ttaaaatcac ctatggaatg gcttttatct tctaagaaat
     5401 atttataagt ttttccggtg aattttttat tttttacatc aaattctatg attcttagat
     5461 attctttacc tttttcattc tcataagcgt tgttattata aatgcttcct tctaaaagca
     5521 aataaagttt agaaccatct ttagagcttg ccatagcttc aaagccttta gaacgcttga
     5581 tattaaattt ctcattttct ccatcaggct tatcgctaaa ttttaaactt ggattatcag
     5641 gagaaataag ttttttaccc tccacataca catcaaaaac ttctttcaaa ttcccattct
     5701 tatcaaaatg aagcaaataa ggaccaaatt catcacctat ataaaattca tcattgataa
     5761 cctgtatact ctcagtatca aaatcagccc cacttaaata cctttcttta gttgtttcgg
     5821 tggttatagg ataggggtat tttttatcac tatctttaaa aaaaactgtt tttaaaagtt
     5881 cgtattttga gtttttaaaa tcaaatttaa actcgtgagc ataaagcata gaatcataag
     5941 aattatactt tttacccaag ccattatcgc taattaccca aaaaacatct ttttttggaa
     6001 tatattttat cccactatgt ccttgtatag gttgattttt aaaaggtaaa taaaaatctg
     6061 tttccctgtt tcccttagat ttaaaagttc caattttttc ttctctagtg atatttgcaa
     6121 atttcccata agttttaaaa aaatcaggag catccttagg aggttttact gtacttttag
     6181 aatctatgat aatatgccct gctaaattgg cctcatactc ttgaactcca aataaaacac
     6241 tgcaaagcat agcacttgtt aaaataacct ttttcatcca atctccttta tttcatatcc
     6301 actataactt tttcttgcca aagttgtggt aattctttag cgcttttttc ccaagctttt
     6361 tgatctttga ttgctcttgc atttttgtat tgctcacttg gtaaaagttt ggcttttata
     6421 tcatctggca aggtaatatg atcaattctt attggccttg cataaccttt tgctagattg
     6481 atttgtcctt tatcagaaag tataaactca cgagctaatt tagccgcatt tggatgtttt
     6541 gcgtatttat tgataatagt tgtataaccc gaaataacac taccatcagc agggattaaa
     6601 acttcataac gatctttgcc cactttatct ctatagccta aaccattaaa atcccaaact
     6661 aaacccactt caacttcacc tttttcaaga ttggctatac ttacatcatt atttacaagt
     6721 cttccttgtt tagctaaagt attaaaaaaa gctaaagcag gacttaaatc tttttcatcc
     6781 ccacctaagg cataattagc tgccaaaact gcactcacag cttgagctgc tacacttaca
     6841 tcacccacgg taattttata atttccctta agcaaatctt gccaagtttt aggtatatct
     6901 tttactacat ctttattgac tataaaagct atggttcctg tataagctaa aagccaattt
     6961 ccatctttat ctttagccca agttggaatt tgatcccagt aacttgtctt aaaaggctga
     7021 gccactcctt gtttaaccgc tatctctcca aaagaagccc ctatatcccc tatatcaccg
     7081 cttgcatttt tcttttcggc tttaaattta gcaatttctt gagctgaact catatctgta
     7141 tcactatgtt ctatgccata aagattttta agatctgccc aagtatcctt ccagtttgcc
     7201 caagtatcag gcatagctaa agaatttacc ctaccttctg cttgcgcagc tttaatcaaa
     7261 ttctcatcaa tagcttgtga atttgaaaac aataaagcaa caagacctaa acttaagaaa
     7321 aattttttac tcattttttt cctttcaaaa aatattttgg aaatttaatg agttttagaa
     7381 acattttaga aacaagttaa tttttaagca aacaaggtta taattttaaa gtcataaaca
     7441 aggagcgatc atgctttata tttatatcaa aactcaaaat gctttagttc aaagaatcaa
     7501 ttttaatctc gatagccaag aactaccgca aaatatttta tggattgatt tacttcatcc
     7561 aagtgcagca gaaattgctt ttatatcaag tgaatttaat cttgagtttc ctacaaaaga
     7621 agaaagggaa gaaatagagc ttagcgcaaa atattgggaa gataatgcga caataaccat
     7681 caatgctcat tttttagtaa gagatcttaa aagtgatgaa gaagatagga atttaatcaa
     7741 gcttcgcaca gaaattgtta cttttgctac cgctaaaaat atcttattta ctataagata
     7801 taacgaattt agcacttttg aagaaattca agcaaggatt ttagctagtc cgaagaattt
     7861 tgaagatggt tttgatatta ttgataaaat gtttgaagta cgcgttgaaa aagatgcgga
     7921 tttactagaa tggatagata aagaagcaag acgcttaaga acaagtgttt tagaaaaaaa
     7981 agatgaatat agttatgatg aaatgctaaa ggatatttca agtttgcaag agcttaatat
     8041 gcgcgtaaga gattctttat ttgataagcg tcgtgctatg acttctttgc taaaaagcga
     8101 taaaatcgat aaagatataa aacaaaatct cactatagtt ttaaaagact taaattcttt
     8161 ggttgaattt agtgtttcgc aacttaatat cttagataat attcaaacta ttttagccag
     8221 ccaaatcaac atagaacaaa acaaaatcat taaaattttt accgttgcaa ctgttgccat
     8281 gatgccacct actttaatag gaactgttta tggtatgaat tttaaattca tgcccgaact
     8341 tgaacttcac tatgcttatc ccatagtgct tggtgtaatg gtaatttcta tcattttacc
     8401 tttggttgtt tttaagaaaa aaggatggtt ataaaaattt attaaggaga aacaatggat
     8461 acaataaaca taggaatttt aaccctaagc gatagagcaa gtagtggcat atacgaagat
     8521 aaagccactg ctgaaattga aagagtgtta aattcatata taaaaaatga tattatttat
     8581 cataaagaat taatccctga tgattatgat ttgatcatta aaaaattact ttatctagca
     8641 gatgaaaaaa aatgtgattt gattgttaca agcggaggta caggtccagc acttcgtgat
     8701 gtaaccccag aagccacgga agctatgtgt gataaaatga tgccaggttt tggagaactt
     8761 atgcgcttag aaagtttaaa atatgtccca acagctatac tttcaagaca gagtgcagga
     8821 attcgcaata aatcttttat cattaattta ccaggaaatc ctaaggctat aaaagaatgc
     8881 ctagagcctg tttttccggc tataccttac tgtatcgatt tgatagaagg tgcttatata
     8941 gaagcaaatg atgaagttat taaggttttt cgccctaaga aaaaatgtca aaattaaaat
     9001 ttattagctc tgataagtct gcttaattgt ctagcaagca gacttgccga agcttcatct
     9061 ttgcttatct tttgcacttt atttttaaac ttacaaagtc tgtcatctaa aatcacatca
     9121 ttgattggaa ttttaggctt ttctttttgt ttttgtgaaa tctttttctt aaaaaacatt
     9181 ctttaatcct ttttttataa atatacacca acttagttga aaagaatatt attttagatt
     9241 ttaaactatt aactttattt cattatttta agctagaatt cgcaaaaaac caatcaagga
     9301 aaaataatga ctttaattgc aattttatgt ctttacacag cacttttatc ttggatttcc
     9361 tatgctcaaa ttcgtttctt agaaagagaa aaagacaaac aagctcaaat tttaagcgaa
     9421 aaagactatc aaaatgcagc agatattgcc atcgaaaatg aaaaatttaa actattttcc
     9481 aatttttata atttaatcat caatattgca tggataggtt ttggattttt atatcttaaa
     9541 gaattgctta tcttaaacaa cactcgtttt gaaaatactt tatttttatt atctttttta
     9601 ataatcacaa gtattttaaa tctaccttta agtatttatg aaagttttat caaagataaa
     9661 gcccatggtt tttcaaatat gactgtaaaa ctttttatca aagacactat gaaaagtctt
     9721 attttaactt taatatttgg atttttaatc ctttatgctt tgcttttttg ctatgatttt
     9781 tttggaactt tttggtggat tgcggccttt atttttgcct tttgtattat agtgattata
     9841 aatctcatct accctacctt aatagcacct atttttaata aaatgaaaaa actagacgat
     9901 gaaaatttgc tgaaaaaaat cagctctttg atgaaacaat gtgggtttag tgcaaatggg
     9961 gtttatgtta ttgatgcaag caaaagagat aagcgtttaa atgcttattt tggtggactt
    10021 tttaaaagca aaagagtggt gctttttgat acattattaa aagccttaaa tgaaagagaa
    10081 cttttagctg ttttaggaca tgagcttgga cattttgttc ataaggatat tatcaaagct
    10141 ttatttaacg gcgttataat tatgttttta cttttttttg tttttgcaaa tttacctgaa
    10201 tttgtttact tagaaagtca tctagaagga gtaaatggtg gcgtgtttgc tcttttattt
    10261 atcttggcaa atatttttag ctttttaatc tctcctatac ttaacgcctt aagtagaaaa
    10321 aatgaatttg cagctgatca acacggagct aaagttacaa gcaaagaaga tatgaaaaat
    10381 gcattgatag ctctagcaag agaaaataaa gcttttatca aaacaagtaa aatatatgca
    10441 tttttttatc tcagtcatcc aagtattagt gatagaatca aggctctttc ttgactataa
    10501 aaaatgctct tatggaagct aaatctagct taaaaggtta tgaaaatgaa gcagtattta
    10561 tactctgtga atatctaaaa aaagataaag cttggttatt tttaaaccaa gatataaaaa
    10621 tagatcatga accttatttt gagcttataa agcgttttaa atctggagaa ccttttgaat
    10681 atatatttga aaaagtggat ttttggggct tagaatttaa tataaaaaaa ggcgttctaa
    10741 tccctcgcta tgatagtgaa attttacttt ttcaaatttt aaatttatgc aaaaaaaata
    10801 cttttaatgg gattttagaa ataggatttg gaagcggaat tttaagcatt gttttagcca
    10861 aagaacttga attaaaaatc acagcctgtg atatcaatcc caaagcctta gaattagctt
    10921 tagagaatgc caaattacac aaagtcgatc acttgattga ctttaaactt tgtcatttta
    10981 agcaaattaa agaaaattat gattttattt tttcaaatcc accttatatt aaaaattcat
    11041 atcctataga tatttgggtg caaaaagaac cgaaagaggc tttatttggc ggagaaaaag
    11101 gatatgaaat tctagaagaa atcatacatt tttcccttga taaaaaagtt aaatttttag
    11161 cttgcgaatt tggctatgat caaaaagaaa ttttggaaaa aattttatat caaaataatt
    11221 tcattgttga ttttttcaaa gatgaacaag gttataatcg tgcttttata gctaaattta
    11281 caaatatgcg ttatgataaa aaataaaagg agaaactctt gaaagctgtt aatttatttt
    11341 tacttgcctc tatcataggg gttgaactca tactaggaat agttgttgca ccaacaattt
    11401 tttttcctca aaatcttata ggagaaggag tgttgagcca ttttcaaagt ggcttaatga
    11461 tgacgcaaat ttttattaag atgggatatt tgctgatttt tgtttcagtg gttaattttt
    11521 tatatgaaat ttattctctt ataaaagatg aaatgaaatt taaaataaaa ttttcaaaat
    11581 ttatgctgag tttgcttatt ttgattttaa gcttaatatt tgttttttat tttactaata
    11641 ccataattga actccaaaac ttaggcgaaa acactacaaa aactcaagaa tttatcagca
    11701 tccataatgc aagtgaagtg gtgattaaaa tcatcttgat aatgcaagtt tttttatatt
    11761 tcttaagctt taaaatagca aaaaaatgat aaaatattaa ataaatccaa aagagaagga
    11821 gtaggccatg atgatctctg atgcaactat aatgcaacaa aattattatt taaataatgc
    11881 acaaaaagct agcgataaag ctttagaaaa tattgcagct gttcgcgcaa taagtggagt
    11941 tgatagtgct aatttagcta ttgctgattc tttaagatct caatcaagca ctatagatca
    12001 aggtgtcgca aatgcttatg atgctatagg ggttttacaa attgcagatg ctagccttac
    12061 caatatctct caaagcgcag atagacttaa tgaactttca gtaaaaatga acaatgctgc
    12121 acttaatgat tctcaaaaag gaatgctaag aacagaagca acacgcatac aagaatccat
    12181 caatgattct tttaataatg caacttataa tggaaaaaat gtctttcaaa ctatgaattt
    12241 tgtagtaggt agcggaactg aaactacaaa tttaaatcca ttagcaacag atggattaag
    12301 catagataat caagatagta ttacaaattt tatggatcaa cttggaagtt taagaagtga
    12361 aataggctca ggtatcaatg ccatcacatc aaatattaat gcaagtgttc aaaatagcat
    12421 caactcaaaa gcagctgaaa ataatttact aaataatgac atggcaaaaa atgttaatga
    12481 ttttaatgcc aattatctaa aagaaaatgc tgctgctttt gttgctgcgc aatccaacat
    12541 gcagcttcaa agcaaaattg ctaatttatt acaataaaat aagccctaaa tagggcttat
    12601 tttttatcaa aatgacttta gagcaaattt tagaaaaaac caaaaacgtt cgtcttgtag
    12661 ccgcaagcaa gtatgtcgat gcaagtataa ttgaaaagct ttttgatcaa ggtatagtag
    12721 aatttggaga aaatcaagtc caagctctag cacaaaaaaa agaaaatctt gatgaaaaaa
    12781 aactagacat aaaatggcat tttataggaa cgctacaaag caacaaaatc aatctcttaa
    12841 tcaaacaaaa acctatatta tggcactctt gtaatggtat taaaatagct aaagctatgg
    12901 acaaaagact tgattataaa ttaaatactt tattagaaat caatagtgca aatgaaaata
    12961 gcaaaagcgg tctagatcca aatcaagccg tagaagaata tttacaaata caagaagaat
    13021 gctctaattt aaatctttgt ggcgtaatga gcataggatc acacagccaa gataaagaaa
    13081 atattataaa aagctttgaa actacattta aaatttatga aattcttcaa aaacatgggg
    13141 ctaagatttg ctctatgggg atgagtaatg attttgaaat tgctataaaa tgcggatcca
    13201 acttggtaag actcggaagc attttattta aaaatcttaa gtaaaacaat cttacttaag
    13261 catatttatt agaaatttcc tctactatac tatcagagat aataaaatct gtatgataaa
    13321 gcaggcaaga tcccgcgcta ataactttta aaacaagttt tttattattt ttttcattag
    13381 gattatgtgc atttctagca atttcatgaa tttcatagat taattctcta tttaaccttg
    13441 tcaaatctag ctctatgata tttttttcaa attccttagg ttctgcggta aaatgatttt
    13501 cttctttatt tttaaaatct ttttttgtgc caaatttttt tatagcttta atctcaccat
    13561 cttcaagact ttgcaagtct ttaattgctt ttaaaaaaaa gctgggcttt tcccctcctt
    13621 cagctttaaa tcccaataca aaaccataag cattattttt caaattttca tctttaatga
    13681 tattttctat ttcttctaca ttactttcaa atacagtagc atcaaacgaa gaataataat
    13741 ccaaaatttc aattctacca taacgcttat tatttttact catcatagat ttaaaatctt
    13801 caattttacc tatacttaaa atttctccat tgttttttaa accttcaaac tctaaacttt
    13861 taacataatc tatggcatta atttgttcat aaaatcgatc taaaggatgg cctgaaacat
    13921 aaattcctaa aatttctttt tcatatccca atttttccat cacttcaaat tcttcatttt
    13981 tgggagtaaa atttacttga acacctgaag ttaactcctc ttcaccaaaa agagaacttg
    14041 cagcattttt tcttacttca gccattttac gcgatgcttc gctaagattt tccatattat
    14101 caaacaaagc ttttctagta aaaccaaact catcaaaagc ccctgcctta ataagacttt
    14161 ctaatgttct acggtttatc ttggtaggat ctatcttacc taagaaatca ttaatatcct
    14221 taaattctcc atcttgcctt gcttcaagta aattttcaac tgcaggaata cccacacttt
    14281 ttatagcccc aagtccgtat ataatagcat ccttgccatc ttgctctaaa gcactaaatt
    14341 cacggatcgc tttgttaatc gatggaggta aaagtttaat attcattttt ttcatctcat
    14401 caatataaac agcaatttta tccacattgt tttcttcgct tgttaaaagc gctgccataa
    14461 attcactagg ataataagtt tttaaataag ctgtttgaaa agtaatcaac gcataagccg
    14521 cagagtgaga tttattaaaa ccatatcctg caaattttac gataagctcc cataaatcct
    14581 cagcttttgc tctatcatat ccttgttttt ctgctccatc tgcaaaatca gttttaagct
    14641 ttttcatctt ctcaggatct tttttaccca tagcacgacg cactacatca gcacctccta
    14701 aagaaaagcc acctataatt tgaacaattt gcataacctg ttcttgataa acaataatcc
    14761 cataagtagg ctctaaaacc ttttctaaac tgtcaaaagg atattctata ctttttaaac
    14821 catgctttct gtcgataaaa tcatcaagca ttcctgattc catagggcct ggacgataaa
    14881 gcgcaagaac cgcaatgata tcttcaaaac gctctggttt taagcgtgca tttaagcttt
    14941 gcataccgcc tgattcgatt tgaaaaattc ccaaagtatt tccactttgt atggttttat
    15001 aaactttgct atcatttaca tctatagttt cccaaataat gtctttattg taacgctttt
    15061 taataagctt gatcgcatta ttgattactg ttaaggtttt aagacctaaa aagtcaaatt
    15121 ttatcaaatc tacatcttct aaatgatctt tagaatactg cgttaccaaa tgtctttcat
    15181 catttttact ttgtctaaaa agcggagttt tcttccataa actttcatta gaaattacaa
    15241 cacctgctgc gtgcataccc gcattgcgat ttaatccttc taaagctctt gcatactccc
    15301 aaacttcagg acctttagga tgacgatcaa taaattcttt gattttaggt tctttttcat
    15361 aagcagcatc aagagtgatt ttaagctctt caggcacaag tttagcaagc tcatcagcat
    15421 cttgaatact catatcacaa actctagcca catcacgaat caccccttta gccaaaagtt
    15481 taccaaaggt aatcacctgt gcaaccttat ccgctccata tttatcaatc acatagtcaa
    15541 tcacttcagc acgtctgtct tgacaaaaat ccacatcaat atcaggcatg ctcacacgct
    15601 caggatttaa aaaacgctca aaaagtagac tataaggaat aggatctaaa tccgtaatcc
    15661 ttaaacaata agaaaccaaa cttcctgcag ctgatcctct tccagggcct actggaatac
    15721 ctttatcttt agccacttta ataaaatcat gaacaataag catataacct gaaaatttca
    15781 tatttttaat gatgttaatt tctacttcaa gtctttgttt gtattcttca tgcttgcttt
    15841 catcgataaa ttttaatctc tcttcaagtc cctttttaca aagttcttca aaaactatgt
    15901 catcattatc aaagctaaat tcttttgttt cttcaggtaa gataatatta tgatctttag
    15961 catattctct tgtaaattta aaattcggtg gagtgggatt gccaagatta agctctaaat
    16021 tacatttttg cgcgatttct tgtgtatttt ctatagcttc tggaatatct gcaaaaagct
    16081 cactcatttg ctcagggctt ttaacataaa attcatgcac actatgacgc attctatcag
    16141 ggtcattaag tttttttccc atagctatac acataaaaac ctcatgggca gccgctcttt
    16201 ctttaaaagt ataatgcgta tcatttgtag caataatttt tatatttaat tctttagaaa
    16261 gtctgataat atcatcatct atcattcttt gatcacctat accatgacgc atgatttcaa
    16321 aataaaaatc atctttaaaa acttttttat accataatgc tgcttctttt gctgcttcat
    16381 agccttttgc accaaaacgc acatttcttt cactataagt atttaagtgc caatttactt
    16441 caccttgcaa gcaagcagaa gaacaaataa gaccttcgct ataatcttcc aaaagctttt
    16501 tattgatacg cggataataa tacaaacctt taatataact ttgagaactt aaatacatta
    16561 aattttgata tccgatctca ttttttgcat acaaacaaag gtgaaaacgc tgacgagaac
    16621 ttttatcatc taattcatca tgattatgta aatacgcttc cataccaatg ataggtttta
    16681 aaccttgtgc tttcattgtt tgataaaaat caattgcccc aaacatattt ccatgatctg
    16741 tcatagcaac acttgtagca ccctgctctt ttaaagtcaa agctaattct ttaagtttat
    16801 tggctccatc aagcaaagaa tattctgtat gtaaatgcaa gtgtgtaaat tgactcattt
    16861 tcttccttta attttttaag gcttatttta attttgataa aaattataaa tttttctcgc
    16921 tgaatttgaa agaaattagc cctaaatttc aacttaaatt tgacaaaaag gcaaaaattc
    16981 agccaaaata aactataata aagtctaaga ttttaatctt aataaaaaga acttttcaaa
    17041 ggatgaaatg atgaaagtaa aaattgctta ttgcaatctt tgaaattatc gcccacaagc
    17101 tgcaaggatt gcagaggaac tacaaagcga tttcaaagat gttgaagtag aatttgaaat
    17161 tggcggcaga ggtgatttta tcgttgaagt agacggaaaa gttatcttct ctaaaacaca
    17221 acttattaat tgcgaaagtg aaagatttcc atatcaaaat gaaattaatc aattaataaa
    17281 aaatagagtg taatcaaaca ctctatcata acattttctc atattcctta ccaatatata
    17341 tgttttgctc atactcgata ataggacgct taatacaact tggattttct aatacaattt
    17401 tttcaagttc tttttcattt aaatttttaa ctttttcttt gtttaagcca agttttttag
    17461 aagttaatcc agcagtattg ataagttctt caaaagattt ttgttttaac catgtgtata
    17521 aaatatcttg attaatcttt ttaatatcca taaaatcaaa cacaatacct ttttgtgtta
    17581 aagcatctat agctttcttt acagaattgc aatttttaat accataaaat ttcattttct
    17641 agcctttttt accaaatctg cgattaaaaa agcaagttct aatgcttgat ccgcattaag
    17701 tcttggatcg cattgagtct cataacgatc ttccaagctt tgagcagtaa cattgcttgc
    17761 accacctgtg cattctgtta catctttccc agtcatttca agatgcactc cacctggata
    17821 aaccccttcg cttattgcaa tctcaaaaaa agatctcact tcttgcataa ttttatcaaa
    17881 ctcacgtgtt ttaaaattgc ctgcttttac cgtatttcca tgcataggat ctatgctata
    17941 tactaaattt aaaccttcac ttttaagttt agagaaaatt tttggcaaat tattgataat
    18001 tttatctgca cccatgcgga taataatatt taatcttcct tcttcattat ttggatttaa
    18061 aacatttgct aaagctatga tatcatcagc acttgcacta ggtcctattt taacccctaa
    18121 aggatttttt actccactta aaaaatgcac atgagcttca tcaagcgccc ttgttctttc
    18181 acctatccaa agcatgtgag ctgaacaatc gtaaatttct ccacttaaac tatccactct
    18241 agttaaagct tcttcataag gcaaaagtaa agcttcatgt gaagtataaa cactaacttc
    18301 tcttagactt ggagtattac ttgtattaat tccacaagct tccataaaag ctaaagcttg
    18361 tgaaattttt tcactgatat cagtatattg cttatggagt tcactctttt ttaaaaagcc
    18421 caaattccaa cgatgtactt catgtaaatc tgctaaacca cccttagcaa atccacgcaa
    18481 caaatttagc gttgttgcgc tttgataata agcttcaagc attctatgtg gatcaggaat
    18541 gcgtgcttgt tcactaaatt caaaaccatt aataatatca ccacgataac taggaagact
    18601 tataccatct aactcttcaa aatcactact tcttggcttg gcaaactgcc ctgcaatacg
    18661 accaattttt ataacaggac atccaccagc aaatgtaagt actatagcca tttgaagtaa
    18721 aattttaaac atatcacgga tatttacagc gccaaaattt tcaaaacttt cagcgcaatc
    18781 tccaccttga agtaaaaaag cttctttttt acaaactctt gctaaagact tttgaagatt
    18841 tctcacttct ccagcaaaaa ccaaaggagg aagtttctca agtcttgcta aaactctatt
    18901 catttcctct tgatctggat agataggttg ctgttttata ggatagtttt tccaagaatt
    18961 cttagcccac atggtttttt ctttcgtttt atttatcagc ttcctctata agttgaataa
    19021 ccaaaaggag aaagggttat tggaacatga taatgtttct gatctttaga aagctcaaaa
    19081 cttacctcta caaaaggata aaaagtattt attttgtgtg atgtgtaata gtcttttgta
    19141 aaaaatttaa gcttataaat tccaaaagcc ctattttcag ctttttcata tggtaataaa
    19201 tctcctattc taccattttc ttcggtaaat tcttcactta cttttttcca ctgttgattt
    19261 gcttccaact tataaagctc aacttttact ttaggagcag gttgtccaga agtaatatcc
    19321 aagacatgag tacttaattg atattcagta gcactcaaaa acattggcac gcttgctagt
    19381 attaataaag tttttttaat agaaaacatt ttctct
//
LOCUS       DARGEX010000020        19103 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.020, whole genome shotgun sequence.
ACCESSION   DARGEX010000020 DARGEX010000000
VERSION     DARGEX010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.020"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            110..535
                     /gene="rplM"
                     /locus_tag="SF010_000582"
     CDS             110..535
                     /gene="rplM"
                     /locus_tag="SF010_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG8229534.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            538..927
                     /gene="rpsI"
                     /locus_tag="SF010_000583"
     CDS             538..927
                     /gene="rpsI"
                     /locus_tag="SF010_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG8229535.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGFDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            1052..2011
                     /gene="cadF"
                     /locus_tag="SF010_000584"
     CDS             1052..2011
                     /gene="cadF"
                     /locus_tag="SF010_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG8229536.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            2011..2652
                     /locus_tag="SF010_000585"
     CDS             2011..2652
                     /locus_tag="SF010_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8229537.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSIVFLNAYEAVNYIARLN"
     gene            2745..6305
                     /gene="nifJ"
                     /locus_tag="SF010_000586"
     CDS             2745..6305
                     /gene="nifJ"
                     /locus_tag="SF010_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG8229538.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            6329..6640
                     /locus_tag="SF010_000587"
     CDS             6329..6640
                     /locus_tag="SF010_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8229539.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            6618..8030
                     /gene="mshL"
                     /locus_tag="SF010_000588"
     CDS             6618..8030
                     /gene="mshL"
                     /locus_tag="SF010_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG8229540.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            8023..8631
                     /locus_tag="SF010_000589"
     CDS             8023..8631
                     /locus_tag="SF010_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8229541.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
     gene            8635..9222
                     /locus_tag="SF010_000590"
     CDS             8635..9222
                     /locus_tag="SF010_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8229542.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVLENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            9212..10771
                     /locus_tag="SF010_000591"
     CDS             9212..10771
                     /locus_tag="SF010_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG8229543.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTVIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKMILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            10768..11949
                     /locus_tag="SF010_000592"
     CDS             10768..11949
                     /locus_tag="SF010_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8229544.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDSYGIFCIFLFV
                     VFIVMLILAYKNFHSFAFSCDFLFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF
                     N"
     gene            complement(11942..12706)
                     /locus_tag="SF010_000593"
     CDS             complement(11942..12706)
                     /locus_tag="SF010_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG8229545.1"
                     /translation="MGFEHLDTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFSTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(12717..13472)
                     /locus_tag="SF010_000594"
     CDS             complement(12717..13472)
                     /locus_tag="SF010_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004306512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG8229546.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFTAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYEKRENTTDAILAFIQKIKTLNSYSSYGYDFFFGKIWQNTPNSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKERQI"
     gene            complement(13489..15315)
                     /gene="flgK"
                     /locus_tag="SF010_000595"
     CDS             complement(13489..15315)
                     /gene="flgK"
                     /locus_tag="SF010_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG8229547.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSKGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            complement(15325..15759)
                     /locus_tag="SF010_000596"
     CDS             complement(15325..15759)
                     /locus_tag="SF010_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG8229548.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDSLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            complement(15801..15998)
                     /gene="flgM"
                     /locus_tag="SF010_000597"
     CDS             complement(15801..15998)
                     /gene="flgM"
                     /locus_tag="SF010_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG8229549.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATASAIADSLI"
     gene            complement(16061..16402)
                     /locus_tag="SF010_000598"
     CDS             complement(16061..16402)
                     /locus_tag="SF010_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229550.1"
                     /translation="MKMDNFLNTYNMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            complement(16402..17448)
                     /locus_tag="SF010_000599"
     CDS             complement(16402..17448)
                     /locus_tag="SF010_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG8229551.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            complement(17507..18190)
                     /gene="rsmD"
                     /locus_tag="SF010_000600"
     CDS             complement(17507..18190)
                     /gene="rsmD"
                     /locus_tag="SF010_000600"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEG8229552.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            complement(18183..18566)
                     /locus_tag="SF010_000601"
     CDS             complement(18183..18566)
                     /locus_tag="SF010_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8229553.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            complement(18563..>19103)
                     /locus_tag="SF010_000602"
     CDS             complement(18563..>19103)
                     /locus_tag="SF010_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229554.1"
                     /translation="HLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNE
                     IKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSY
                     KIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFLAL
                     IEGIQAPSLKNHTLKVSLI"
BASE COUNT         6445 a         2636 c         3253 g         6769 t
ORIGIN      
        1 atgaaattca aattttggaa atataaactt tatttttact taaattaagt aaaaattaat
       61 attatttttt atacaatcac attttaaatt tttggcaaag gtaaaaatta tgacaaagat
      121 aacaaagcca aacgaagtaa aacgagaatg gattgtttta gacgcagaag gcaaacgctt
      181 tggtcgtctt ttaactgaag tagcaacaat tttgagaggt aaaaacaagc cttgctttac
      241 tccaaatgtt gattgtggtg attatgtaat tatcatcaat gcttcaaaag ctgtatttac
      301 aggtgctaat aaagcagaag ataagcttta tcatagacat tcaggatatt ttggaagtgt
      361 aaaaagtgaa aaatttggtg atttacttga aaaaaatcct gcaaaattgt ataaattagc
      421 agttagaggt atgcttccta aaacaaattt gggcagagct atgcttaaaa aattaaaaat
      481 ctatgcgggt agtgagcacc cacacactgc acaaattgct aaagaaggaa aataatcatg
      541 gcaacaacat acgcaacagg taagagaaaa actgctatcg caaaggtatg ggtaaaacca
      601 ggtagtggta aaattagtgt taatggtttt gatttaaaca cttggcttgg tggacacgag
      661 gcgattaagc ttaaagtggt tcaaccttta cttgtgacta aacaagaaac ttcaatggat
      721 attaaggcaa ctactttagg cgggggctat agtgctcaag ctgaagcttt aagacatgga
      781 atttcaagag ctttagcagc tatggatgct gattttagag ccttattaaa acctaaagga
      841 cttcttacta gagatagtag aactgttgag cgtaaaaaat atggacgccg caaagcaaga
      901 agaagcccac aattctctaa acgttaatat ttttggtggg attttcccac ctttctacaa
      961 ttttttataa aactcatcct tttttctatc atttatgtta taattgcaaa atttaaattt
     1021 ttattttata acacaatgaa aggttttttc tatgaaaaaa atattcttat gtttaggttt
     1081 ggcaagtgtt ttatttggtg ctgataacaa tgtaaaattt gaaatcactc caactttaaa
     1141 ctataattac tttgaaggta atttagatat ggataatcgt tatgcaccag ggattagact
     1201 tggttatcat tttgacgatt tttggcttga tcaattagaa tttgggttag agcattattc
     1261 tgatgttaaa tatacaaata caaataaaac tacagatatt acaagaactt atttgagtgc
     1321 tattaaaggt attgatgtag gtgagaaatt ttatttctat ggtttagcag gtggaggata
     1381 tgaggatttt tcaaatgctg cttatgataa taaaagcggt ggatttggac attatggcgc
     1441 gggtgtaaaa ttccgtctta gtgattcttt ggctttaaga cttgaaacta gagatcaaat
     1501 taatttcaat catgcaaacc ataattgggt ttcaacttta ggtattagtt ttggttttgg
     1561 tggcaaaaag gaaaaagctg tagaagaagt tgctgatact cgtgcaactc cacaagcaaa
     1621 atgtcctgtt gaaccaagag aaggtgcttt gttagatgaa aatggttgcg aaaaaactat
     1681 ttctttggaa ggtcattttg gttttgataa aactactata aatccaactt ttcaagaaaa
     1741 aatcaaagaa attgcaaaag ttttagatga aaatgaaaga tatgatacta ttcttgaagg
     1801 acatacagat aatatcggtt caagagctta taatcaaaag ctttctgaaa gacgtgctaa
     1861 aagtgttgct aatgaacttg aaaaatatgg tgtagaaaaa agtcgcatca aaacagtagg
     1921 ttatggtcaa gataatcctc gctcaagcaa tgacactaaa gaaggtagag cggataatag
     1981 aagagtggat gctaaattta ttttaagata atgaataaaa ctattttatt tgatttagat
     2041 ggcactttaa ttgattctac tgatgctatt ttaaattctt tccaaggagc ttttaaagcc
     2101 cttggattaa cttctaaaaa taatgaagaa atcaaaaatc tcataggtta tcctttagag
     2161 caaatgttta gaatgcttta tccagataaa gtaaatttaa gtaaagaatt tgtattagct
     2221 tatcgtgaaa tttatgcaca aatttattta gaacaaacca ctcttttgcc taaagcaaaa
     2281 gaagcattag aacttggaag cgaaattgca gatcttggta tagttacaac aaaaggaggt
     2341 aaatttactc cgattttact tgattatttg ggagttaaaa aattctttaa aactttaatt
     2401 actcttgaag atgtcacaaa tccaaagcca agttccgaac ctataatttt agccttaaaa
     2461 agactcaata aaactcaaga aaatgcctat atgataggcg atacaatatt agatattcaa
     2521 gctgcaattt ctgctaatat cactcctttg gccttaactt gtggctatgg caatgaaaat
     2581 gaattaaaag ctcattctat agtattttta aatgcatatg aggctgttaa ttatatagct
     2641 agattaaact aatttcaagt tttcgttaaa cgccttttaa gagaatttat agtaaattga
     2701 tagctaaaaa attataaaaa ttatcaatat aaaggaaggt ctcaatgggt aaaattatga
     2761 aaactatgga cggaaatgag gctgctgcat acgctgcgta tgcttttact gaagttgctg
     2821 gaatttatcc tattacacct agttctccta tggctgatta taccgatatg tgggcagctg
     2881 caggaaaaaa aaatcttttt ggagttcctg taaaaatcgt agaaatgcaa agtgaagcag
     2941 gagctgcagg tagtgtgcat ggatctttac aagctggggc tttgactaca acttatacgg
     3001 cttctcaagg attactcctt aaaattccaa atatgtataa aatagcaggt caattactcc
     3061 cctgtgtaat ccatgtagca gcgcgttctt tggctgctca agctttgtct atctttggtg
     3121 atcatcaaga tatttatgca gcaagacaaa ttggttttgc tatgctttgt tcgcattctg
     3181 tgcaagaaac catggactta gctggtgtag cacatttagc tgcaattaag ggaagagtgc
     3241 catttttaca tttttttgat ggttttagaa caagccatga aattcaaaaa gttgaagtaa
     3301 tggattatgc gcattttgat agattattag atagagaagc tttgcttgaa tttagaaata
     3361 atgctttaaa tccagaaaat ccaaaaacac gtggaacagc acaaaatgat gatatttatt
     3421 ttcaaactag agaagtaagc aatcgttttt acgatgcttt acctgatgtt gttaatgaat
     3481 atatgcaaga aatttcaaaa attacaggta gagaatacaa accatttact tattatggtc
     3541 acaaagagcc agagtgtgtg attgttgcta tgggttctgt aactcaagca cttgaagaag
     3601 tggtggacta tcttaatgcc aagggtgaaa aggtagggat tttaaaagtt tatctttatc
     3661 gcccatttag tttaaaatat ttctttgatg ttatgccaaa atcagtgaaa aaaattgcgg
     3721 ttttagatag aaccaaagaa ccaggaagtc ttggagaacc actttatctt gatgtaaaat
     3781 cagctttcta tggaagagaa aatgctcctg ttatagtggg tggaagatac ggactttctt
     3841 caaaggatgt tgatcctgct caaatgatag cagtatttga aaatcttaaa cttgataatc
     3901 caaaagatgg ctttactgta ggtataattg atgatgtaac tcatacttca ctgagtactg
     3961 gagagaaaat ttcacttgga gatgaaagta cgatcgaatg tttattttac ggacttggtg
     4021 ctgatggaac tgtgggcgca aataaaaact cgattaaaat catcggagat aaaacggatt
     4081 tttacgctca agcttatttt gcttatgatt ctaaaaaatc agggggttat acaagaagcc
     4141 atttaagatt ttctaaaaaa cctatccgtt caacttatct tgtttcaact ccgcatttta
     4201 tcgcttgttc ggtagcggct tatttggaaa tttatgatgt tttagcagga attcgcaaag
     4261 gaggaacttt ccttttaaat agtatttgga atgctgaaga aaccataaga caacttccag
     4321 atgcagtaaa gaaaacttta gctgaaaaag aagtaaattt ttatatcatc aatgcaacca
     4381 aactagctcg tgatataggt ttgggaaatc gtacaaatac cattatgcaa tcagcctttt
     4441 tcaaacttgc aaaaatcatt ccttatgaag acgcacaaaa atacatgaaa gagcttgcgt
     4501 ataaatctta tagtaaaaaa ggcgatgcta ttgtagaaat gaattacaag gctattgatg
     4561 tgggtgctga tggacttgta aaagttgaag tggatccaaa ttggaaaaat ttagagctta
     4621 aagaaaaaga acaaaccaat gcctataaag gtactgaatt tgttgaaaaa atcgtaaaac
     4681 ctatgaatgc ggctaagggt gatgatttac ctgtttcagc ctttttaggt tatgaagatg
     4741 gaagttttga acacggcaca accgaatacg aaaaacgcgg tgttggggtt atggtaccaa
     4801 gatggataga ggcaaattgt attcaatgca atcaatgtgc ttcagtttgt ccgcatgctg
     4861 ttatcaggcc atttttgatt aatgatgaag aaatggcaaa tgcacctcgc ggtgtaaaag
     4921 atcatgcttt agaagctaaa ggaaccaaag gagaaaaatt aagctttaaa attcaagttt
     4981 ctccacttga ttgtacaggc tgtgagcttt gtgttcatga gtgtcctact aaagaaaaat
     5041 ctttggttat ggtaccactt caagaagaga tggattttgg tgagcaagaa aatgcggatt
     5101 atttatttaa agaaattact tataaagatg atattttaaa taaagaaacc acaaaaggag
     5161 cgcaatttgc ccaaccttta tttgaattcc atggggcatg tcctggatgt ggggaaactc
     5221 cttatattac tttaattaca agattgttcg gtgaaagaat gattgtggct aatgctacag
     5281 gttgtagttc tatttatggg ggttcagctc catcaactcc ttatagaaaa agtgtgaaaa
     5341 atggacacgg tcctgcttgg ggaaattcac tttttgaaga caatgctgag tttggtttgg
     5401 gtatgaaaat tgcaactgaa aatacaagac accgcattga acatatcatg aatgaaagta
     5461 tgcaagaagt tccaaatgct ttatcagctc tttttaaaga ttggattgca aataaagaca
     5521 atggtgctat gtctgtggaa attaaagata aaatgatccc tattttagag caaaataaaa
     5581 atattaaagc cgtacaagat atattagagc ttaaacagta tttaagtaaa aaatctcact
     5641 ggatttttgg tggtgatggt tgggcttatg atataggcta tggcggactt gatcatgttt
     5701 tagcaagtgg agaaaatgta aatattttag tgcttgatac agaagtttat tctaatacag
     5761 gcggtcaaag ttcaaaatct tctagaacag gagctgtagc acagtttgca gcagcaggca
     5821 aacctataca gaaaaaagat ctaggtcaaa ttgctatgac ttatggttat atttttgtag
     5881 cacaagtaaa ttcaacggca aattatactc atcttatcaa agctatcact gcagctgagg
     5941 cctatgatgg accatctttg gtgatttgtt attctccttg tatagctcat ggtattaaag
     6001 gtgggctggg ttactcagga gagcaaggtg agcttgctac aaaatgtggt tattggccac
     6061 tttatacctt tgatcctcgt ttagaagagc aaggaaaaaa tcctttaact ctaacaggaa
     6121 aagaacctga ttgggattta tatgagcaat ttttgatgaa tgaagtgcgt tataattcac
     6181 ttaaaaaagc aaatcctgaa cacgctgctg agctttttga acgcaataaa aaagacgctc
     6241 aacgtcgcta tagacagctt aagcgtatcg ctatggctga ttatagcaat gaggtcgaaa
     6301 gctgataaaa tatattttta gtgctacatt gtgttttagc actttgtttg cacaagataa
     6361 ttttgaagag tattttaaac ttatagataa agaaaatcgt ataaatttta atactcttca
     6421 aaacccattt gtgaatccta cttttgaaaa attaagacat attaaaatta ctgcaattat
     6481 gcttgataaa gtaaaaattt atgatcgatg gtataaaaaa ggtgatatga ttgatgatgc
     6541 tataatatat gaaataaata ctaaagagat taaattccaa tatgataatt tagaaattgc
     6601 aatccaaata aataaaaatg ataagattaa tattaattaa cattcttttt tgccattatc
     6661 tttatgcttt agattgtcaa aagcgtcttt ttgatatcag tattaatgaa aaattaagca
     6721 tacaagaaag tcttgatgag cttgcaaaat attgttcttt tagtattatt gttaaagata
     6781 aaattgccaa agaaaaatta gaaatattgc aaaactctgt caatattcat caaatgagtt
     6841 tagacgaaat ttttaatttt tttatcaaag agcatgatct tagctatgat tttgatggta
     6901 aaattttaag aatttcaggc attaatacga agatttttaa gataagttat atcacttcta
     6961 tcagagaagg acaaagcata actaaagcgt ctgtagacgc taaaccaagg caaagtgaat
     7021 atagcggtag ttttgatgac gcagaagaca atatgattaa aagtatggaa aaatttgatt
     7081 tttggcaaaa tatagaaaaa gagattattg tattattaaa aaattctcat gaagattatg
     7141 aggctaaaat tcccattata aatcccaatg caggtcttat tatagtaact ggaacaaatt
     7201 ctcagttaaa aagtgtgaaa aattatttgc aaaaactaga aaatcgtctt aaaaaacaag
     7261 ttattatcga tgttagcata cttgctgtga gtttaaatga aaaccattct agtgggatta
     7321 attggcaaaa ttttaatata ggtttaaatt cgcaagtaaa taatgaaaat tcttttattc
     7381 agtttcaaaa tgggcaaggt tttgttaaga atttgggttt aagggcgaat ttaaattttg
     7441 attctattat taactttctt tctcaaaatg gaaaaactag cgtgctttct aatccaaagc
     7501 ttatggcttt aaataaccaa caagccatta tttctgtagg tgatactata aattatcaag
     7561 ttaaagaaag ttctaaaggc actgaaaatg ggactactgt tagtgaaagt tataacaatt
     7621 attctatttt tgtaggcatt ttactcaata tcttgcctga aatttctgat gatggaaaaa
     7681 taatgctcag gattaatcca agcttaagtg attttaagta tccagaagat aataaacgac
     7741 aaaaagaacc aagaactatt gctcctgata ccatacaaaa aaagctttct agtgttgtgc
     7801 aagtagagaa taatcaaact ttaattttag gtggattgat ttctcacgat aaatctaatg
     7861 agaaaaattc tatcaatttt ctatcaaaaa ttccaatcct aggttctttg tttaaaggag
     7921 aagttttaaa ttctaaagca accgaaattg tttttattat cactccaagt atagtagata
     7981 gtgtaaatgc tccaagtctt aaagatctag gatttaagca ttatgagtaa aattattcca
     8041 tttagagaag aaatttttca tcaaatcaat caaattttag aaagccaaaa agcttttatt
     8101 tttttatggg gaaaaagtgg tagtggtaaa agtgtattgt tgcaaagatt ggcaaaaaaa
     8161 tataatgttg attttattaa tgaaaatttt aaagatcaga gtttcttaaa agaaaaaatt
     8221 gagtttttga tttcacaagg tcagagttta atcattcttg atgaagtggg aatgtatgat
     8281 tatgcaatgc tagaaagcat caggatttat agtgattcta taagttttgt tttaagttct
     8341 cataaaaagt taaatatact taaaaaagag cattttaaaa gtcgtttaag tgcttgtttt
     8401 aaattgaaaa atattagtct tttagaactt gatgattata ttaaattgaa attcggaatg
     8461 aatttttcaa ataaatgtct taagttttta caaaaaattt ctcaaggaaa tttaagatat
     8521 attgataaaa ctttaaaaag tttttatgag ataaatagtt tttttgataa aaacaaaagt
     8581 caagagtata ttttaaagct tagtgcttta gagaatggct tattaaggta agatatgcaa
     8641 gaaagaatta aagagcttga gcttaggtat aaatactttt tacttaaaaa atatttaaaa
     8701 tatttattat taattattct aatatcagta atagcatttt gtttttttgt gctaatgcaa
     8761 aaatataata agcaaaaaaa tatttatttg caagctattg aacataaaaa gcatttggag
     8821 caaaagattc ttcaagcgca aattttacaa gaaaaaaata agatttctag ggaaaagtta
     8881 tataaagaac tagaagaagt taaagcggtg ctggaaaata cacatattag caagatagaa
     8941 attgattcta aaattttaaa tatttctgat ttaaaaaaat ctttttatca aaatccaagc
     9001 tatgaaaagg cattaaattt agctaagaag tattttgata ttaaagctta tcaaaagaca
     9061 atattttggg ctttaaaagc caatgaactt gacaagcaaa aacaagattc ttggctgatt
     9121 tttgctcagg ctaaaagagc tttaggcgaa gaaaaagaag ctcaaagtgc tttagatgct
     9181 tatataaatt attatggttt aatggaatta gatggaaagt agaatggata aaatttttca
     9241 agcttatatt gataatgaaa taagtcttga tgaaatttgc actaaattta atatcacttc
     9301 ttgggatttt tttaaaaaat tagcaaattt ttgtaatttg cattttgttg atttagatga
     9361 agataatgat tttatttatg aaggtatacc tttttcttta cttttaaaat ttaaatttct
     9421 gcttattaaa aacaatgacg gctttatgat tattagatcc aaaccttgtt ctttagagct
     9481 tttagagcaa gttaagactt ttatgatttg tgaaaaaatc gacactgtaa ttgccgatga
     9541 attaaagata gctaaaattt taaatcaaat tcgcattcaa gaggagatta aaagattaag
     9601 cattaagctt agacttgaat ggcaagaaaa tcacaaaaga gatgatcaaa gttgcatcag
     9661 tcaaattttt gattttttat tacatgaaat tttatctttt catgcgagtg atattcatat
     9721 agaagcaagg aatgatgatg ctttgattag gtttagggtt gatggaattt tgcgtgaatt
     9781 tgctattttt gagaaggata tttatgaagc tttggttttt catgtcaaat ttttagcttg
     9841 tttgaattta gctgaatcaa gaaaaacaca agatggaagt tttgaattag attttgaaaa
     9901 tgaaagatat gattttcgtg tttcatgttt gcctttgatt tatggcgaaa gtgttgttat
     9961 aagaatttta aaacatgata aagaaatttt ggatttgtat aaactaaatc ttggaaataa
    10021 aaatttagaa attttaaaaa agattttaca tcgtcccaat ggaatgattt tattaaccgg
    10081 tcctacaggt agtggtaaaa gcacaacttt atacgcgtgt ttaaatgagt tgaaaagtat
    10141 tgaaaaaaag attatctccg cagaagatcc tatagaatat aaaattcctt tagtgcagca
    10201 aattttgctt aattcaaaag ttggagtcga gtttaatagt gttttaagag caattttaag
    10261 gcaagatcct gatattatca tgataggaga aattcgcgat gaagaaagtt tagatattgc
    10321 acttaaagct tctttaacag gtcatttgct tttaagcacc ttgcatacta atgatgctct
    10381 tagcaccatt gataggcttt tggatatgca agcaaaaagt tacttgatag catcggcttt
    10441 gagtcttgtt atagcacagc gtttggttag aaaactttgt ccttggtgta agcaaaaaag
    10501 caaaaaacat tatattgaat ttgaaggtga attttttgaa ccaaaaggat gtgagcgttg
    10561 tcatcatagt ggattttttg gcagagaatt aatcgctgag tgcttagaga tcaatgaaga
    10621 tttatcttgt gcaattaggg aaaatcaaga taaaatgatt ttaatggagc ttgcaaaaaa
    10681 atatggcttt caaactatgt ttgaacaagg tttaaaaaaa gccaaagaag gtcttacaag
    10741 tatagatgag cttttaaggg ttgtaagatg aaattttatg aagtggaatt tcttaaaaac
    10801 aatcaaaatt atacaaaaac tataaaagct gaaaatttaa atacagcaca agcaaaagcc
    10861 ttatcaaaga attggaaaat cattgatata aaagaaattc aaaaatctaa ttttcagaga
    10921 ttaaaagatg aaaattttat actctttttt aaagagctgg ctttgttgtg tgaagttgga
    10981 ttaagtgttc aagaagcgat tagagaatta tatcttatgc attcttgcaa gattatgaaa
    11041 aaaatattag acaatttaat tttagcccaa aatctaaatc aagcttttga aaatgctaat
    11101 tttggattaa atcgtgcgga gctagctttg ataaaaacgg ctgaaaagac aggaaaaatc
    11161 agcgaagtgt ttagtcaaat ttctaaactt cgagaaaaaa gcttagagag tcaaaaacaa
    11221 ttgaaaaagg cttttagata tcctactttg gtttttttaa gtattatcgg agcatttttg
    11281 tttttaatgc tttttgtagt gcctaatttt aaagatttat ttgaaaattt aggcacgagt
    11341 ttgcctttta tcacgcatgt aatgttagaa atttataatt ttttagatag ctatggaatt
    11401 ttttgcatat ttttgtttgt tgtttttatt gttatgctta ttttagctta taaaaatttt
    11461 cattcttttg ctttttcttg cgatttttta tttttaaaaa tacctttgat ttctcgtttg
    11521 attatttata atcaaaatta ttattttttt atggtttttt ctttgctttt aaaaaatgga
    11581 atttcaatat ctaaagcttt tgatttagct attatagggc ttgaaaataa atttttaatt
    11641 tttcagtata aaaaactttt tagttttata gattctggtc ttgagttaag tcaggctttt
    11701 aaaaagattg atatttttga ttctttggta ttttctatgc ttagtgttgc gatgaaaagc
    11761 ggaagacttg aagtgttaag tgaagaaatt gccaaatatt atcaacaaaa aagtgaaaat
    11821 ttaatggata gatttttgat ttttttagag cctatgatga ctttatttgt ggcgctttta
    11881 gttttgtttt tggctttagg tatattttta cctatgtggg agcttagctc agggatcaat
    11941 tttaactaaa ataatcccaa gctactttaa tgatagtagc tcctacaacg attaaaaata
    12001 aagtttttat aaactttcca ttagttttta atacaagttt tgagcctaaa taagctccta
    12061 aaacttgtcc tacgcccata agcaagccta cagcccataa aagttcgtat tgccataaaa
    12121 atatagcaag agcaatgata ttactagtga aatttaaaat tttagtatta atgcttgctt
    12181 ttctcatatt aaaacctagt agcatcacac aagcaaaaat ccaaaatgaa cccgttccag
    12241 gccctaaaaa tccatcataa aatcctaaag ttaagccaca aattaaatga aaaattttga
    12301 tattttttat tttaggttcg ctttcgtgtt tgcctaagtt aggacgtaag gctgtatata
    12361 agaaagtaag agttaaaaag attaagataa taagctttaa ttgctcatct tttacaaaaa
    12421 gaacgctata gcttcctata gctgctccta aggctgtaga aaaaacaccc caagcaagat
    12481 gaggtagagt ggtggattta aaataagtta aagtagccgt aaaagaacca aagacgcttt
    12541 ggagtttgtt tgttgctaaa gataaatgcg caggaatccc acaggctatg agtgctggta
    12601 gagtaataag ccctcctcca cctacaatag aatctataaa accagcaaaa agagctacaa
    12661 aaaaaagtat gaagtaataa attgtatcta agtgctcaaa gcccattttt cactccttaa
    12721 atttgtcttt ccttactttg ccctaaacga tagagtgcaa agtcatattt tatgggatca
    12781 tttgcatcta atttttttaa attttgcgtg agttctaaaa cacttttata atcatatatt
    12841 ttacgcttta gaagtcctaa ggtcaaggaa attttatgtg tatgtgtatc aagtggaatt
    12901 aaaagatctt tggtgtgaat tttggtaaaa agtccaagat caagttcatc ttttctaacc
    12961 atccatctta gatacatatt atagcgttta agaggtgaat taggggtgtt ttgccaaatt
    13021 tttccaaaga aaaaatcata cccataactt gaatatgaat ttaaggtttt gattttttgt
    13081 ataaaagcta agatggcatc tgtggtattt tctctttttt cataggcttg ataaaaaagt
    13141 tcgtagagtg aaatttcatt tttcagtctt gaaagagtga taaaaatttc ttgtatatct
    13201 ttctcatttt ggaagcggta ttttaaattt ttaagttctt tttttatttg tttttcttga
    13261 aggtttaata aagaaaaatc aagttttttt agaaaattta ctatattttt agcatttcca
    13321 taggcaaata aagcacaaat taaggcagta aattcatcat tgtgaatttt agcaatttgc
    13381 aaaggatctg gagtttcaaa aagggaatga ttggtgtttt tttgattggc taaaaaatca
    13441 agcttggctt taagatggat aaaatttttc acttgatatt actagagctt aagatttaag
    13501 tcctagtaag gtatcaagca tttgatctac agttgagacg atttttgctg ctgcgccgta
    13561 acttgattga tattgtataa gagcggctaa ttcttcattt gtatttacac cacttttaga
    13621 ttggtattcg ctataaacag aattataaag agtttcattg cttgaattta caacattgtt
    13681 attttcacca tctgaggcta ttttacctgt aagtttgcgg taatattctt ccatagtaag
    13741 attatcgata gtaccatctt cattataaaa attaactttt tcatattgaa gttggatgat
    13801 tttatttgcc atgtcattgc cactatcaac cccatttgag cttgctctta ctgtgcttgg
    13861 atcatttaag atagaatctt ttactttcat atcacttgca tcagttccgc tgaaaaaacc
    13921 acctatgcta aacgcacctg cgaaatttgt gcctttatct tcaatggcta ccttaaagcc
    13981 tgattttgca ttgatttgga ataaaccatc tccagttttt gcatcgtagc taaaacttgc
    14041 attgatatga tcatcaacat catcgtttga atttttattg tcattatcat ctgtattggc
    14101 attgatttga cgcatgatat cattcatggt tgtatttaca tctatggtga tggttttggt
    14161 gagtttttta tcgcctttat catcataaat gactatatca aaacttcctg gttgtatggt
    14221 tctgtcgtaa ttaactaaag gaatatctcc cttaagtcca gatagataat cagaagtaac
    14281 agaacttttc gcagaactcg cataaagatt gttagtttca ttgatcatgg tcttagcaaa
    14341 agtatctaaa gaatccatat aaccttggat aattccatct tcatattttc ctttgctttt
    14401 gctatagttt ctaccgcgta agtcaagttg agcaccaagc tgtccaccgt taatctttgc
    14461 agtaagatcg cgaacttttt catcaggagt ttcataataa atgctataag atttattttt
    14521 atcatcataa tcaagcttta aaggatgaaa atttatccca tctactatac taaaaccttc
    14581 tatacttaga ttgtattgat gtcctggatc agtgatggtt gtatcaaggc gattgtcttg
    14641 attgatttca tttttgcttg caactgcact aactagcttt gaaagggtaa gttcaagttc
    14701 atctcttcta tccctaagct catttgcgtg ttctgttggt aaggcttctt gtccataaat
    14761 ttgtttattt atagtagcaa tttcttcacc gattctatta atctcatcaa ctgtattttt
    14821 aatatcatca tttacttttt tttggatttt atccaaggtt gcaaaagtgt tattaacgct
    14881 ttctgttaag gtttgagaag cttttacaag ggctattttt gtggcatttt cattagggtt
    14941 agatgcaaaa tcattccaag ctttgttata attttctaaa tctttcaaaa ttccagtatt
    15001 ttgtaagtct ggaaaacgct gagcgatttc ttgtaaggtt gaagccatat atttagtgta
    15061 ttctagttgg tttgatgcac cttttaattt atagtaagaa tactcatcat gcaaacgcac
    15121 tatactttct atagcagttc ctgtgcctac ttgaactcca cctgtggtaa tatacccatt
    15181 tgtagtttgc actactcttt ggcgtgtata aaaagttgca ttagcatttg agatattgtt
    15241 tccagttgtt gcgatttgaa cttcgcttgc ctttaagcct gtaacacctg tgtataatgt
    15301 tccaaaaata cccattataa atccttatac attgatcttg aaaattgact ctggatttgt
    15361 ctttttatct ccataagcat tatttgttcc atcattgata tcaaacattt tatttactaa
    15421 gctatcaaga aaatctttga caataagaac aaatttagca tactctttgt ttttactatg
    15481 aaggttttga agattttttt taagtagatc tagtttttgt ttatcttcat catctaagag
    15541 ttcactaagc ccttttgtag agctattatt tagctcaacc aaggcaacat caagttgttt
    15601 tttagctgta ataaattcgg cgataagttt gtttttttct tctacacttg gcgttacact
    15661 ctcatgttta gccactttga tattttctat atcttcttcg gttaaagcaa taagttttgc
    15721 taagatagca tttacttcat caagtctttg tttaagcata ttttctcctt ttctctctca
    15781 aaaaaaggag aatgaaagtt ttagattaaa gagtcagcaa tcgcagaagc cgtagctttt
    15841 gtatcgattt tataagtacc gtttttaatc tgctctgcga ttttactcgc tttatcattt
    15901 tccgtttttt gagtatcgtt tgttttagtt tctttatcta ttctatttgt atttaatgtg
    15961 gtatttgcca cataactttg ttgtatagga ttgatcattt ctgcctcctt gatcttagtt
    16021 ataatcctct acaaaccata tcgacccaaa tttaaaaaac ttaacccctt tcttttaaaa
    16081 aatcgtataa taattttgaa aaacccatac ctccacttaa agctttactc atggtatcgt
    16141 tatacatgga agagtatatt tcatcgctgg catcttttcc aaagagtgaa ttttgacttt
    16201 ttaaagatac gtctaaaact tgctttaaaa aaaatgcttc aaaagcatcc gtttgttctt
    16261 ttaaggcttc atcttctttg ctctttgtaa ctatatcatt gtcatttatt ttgatgcttg
    16321 attctaaact tcttgctttg gctgcacgat caagtaaagc actattcata ttataagtat
    16381 ttaaaaaatt atccattttc attagatgat ctccaaatcc gcgttaattg cacctgcgcg
    16441 ctttaaattt tccataatag cgataatgtc atttggggtt gctccaagct tgttcagcat
    16501 tctagctata tttgcaactg tgctttttgc attgttgatt cttaaggtat ttgaacttgg
    16561 atctacaaaa ccaccatctt tcatatcgat ttcattttga ttagctactg cgttattgtt
    16621 tggatctatt tttatagtga tatctttatg agtgattaaa acaggttcta cctctacatc
    16681 aactccagca atcactgttc ctgttctttc atcgatgata actttgcttt gtggtttata
    16741 agctatatct tgttctaaaa ctcttgccat aaaatcaaca tttgaaagat cttcaggttt
    16801 tttgagtttt actgtgcgag agtcgatggc tttagctact tcttcgccaa agacagtatt
    16861 taaaactctt tctatatcgt ttgcggtttt aaaatccgct acttttaaac ttaaggttag
    16921 atcattgttt tggctaaaat tttgtggaat ttctctttct acattagctc cgcccattac
    16981 agttgcagca gttgagtgag aacctgctcc tcctggtcta ggtgttaaac ctcctgttga
    17041 gatagagcct tgtgctatgg cataaatttc accatcaatc ccacgaagtg cagtcagtaa
    17101 aagtgttccg ccttgtaaag attttgcatc acccatagat gaaacggtaa tatcaagttt
    17161 atctccgctt tttgcaaagg ctggaagttt ggctgtaacc ataacagctg cggtattttt
    17221 tgatttgata tcgttaggat ctactttgat attcatacct tgcaaaaggt ttgagatgga
    17281 ttgtagtgta aatttagagc ttgttccatc gccgcttcca ttaagcccta caacaagtcc
    17341 ataacctata agttggttat ctcttacacc tacagtgttt gctacatcct tgatttgcac
    17401 tgcaaaaatg cttgtcataa agagtaaaaa tatcgttaaa actctcatgg attcttcctt
    17461 taatctattg ttgatgatag atcaagcaag aagtgttcca agtaagttaa gaagcgtaaa
    17521 agcttaagct agttgatcca aatttctttt ctttgacttt ttgaaaattt tggatttttt
    17581 cgggagtttt tatggttgag tggtgttcaa aaatgattaa atttaaagtc tttaaatcta
    17641 aattttctaa aaaatgataa attttttcat aaatatcgct aaaaccttct ctggtatcaa
    17701 aaggtgggtc aagatataat atgatttcat tttttgaatt ttctatgagt ttaggtaaaa
    17761 tttcaaaagt atttgcatgg atcacttcta aatttggatc tatattttta gcattttcta
    17821 aagcaatttt ataagctttt gcatcaagtt ctatagcata agcttttaaa gcatgattac
    17881 ttagtgcttc agccgccatt aaagcacttc ctccaaaggc ttcaatgaaa attttacttc
    17941 ttaaatcttc tcttattaca ttaaaaacac aacttttgac tatgctttta gtacttcttg
    18001 ttgttgtaag actaggtaaa agtagttttt tccctttgta tttaccactt tctatatttg
    18061 tataaagctt tgtttcttta gttttttttg ttttttcttt aggaggttta atttcttgtt
    18121 tttgaagaaa tttttttctt ttttcattgt gattaaaaaa gtctttaacg cttataaatt
    18181 catcattcat cattaagtgc ttttacgagt ttgtttttaa gatcttttat ggcaagatcg
    18241 attttatttt cataatcttt tttaaattcc aaagcaatag cgtcaatttt ttcttcaagc
    18301 agtctttttt gttcaagtgc aagttgcaaa gctgctgctt ttaaggcatt atcaaattca
    18361 tttaaagact caaacaaggc ttctttgcta aatggtatgc ttaaaaatgg agagttttta
    18421 gagatgataa ataagggttt tgcggtatga attttttcat cgctaatgat gaaatcacaa
    18481 ttttttttca ttaccaaatg atcttttaaa aaaagttcta aagttttttc tatgatgaga
    18541 tctttgcatt ctaaagagat tttcatatca aactaacctt taaagtgtga ttttttaatg
    18601 atggagcttg tataccttcg ataagggcta aaaactcaaa acggctcaaa atataaaagt
    18661 cttcaaattc ccttccactt gtttgcataa gttttttagc acaagtatca aaaagataaa
    18721 aatctttttc ttcttttact accataaaat cagccccgct atcataagcg tccaaaacaa
    18781 tatctgcggc tattttatag cttagcgtag gatttagatt aagcaagcta aagccattat
    18841 tttttatact gttttcatag gaaataaatt tagccttaag tttcgatttt aaagtatcgc
    18901 aagcattaaa accataaaaa gctatattga aatctttaaa attatgttta atttctttaa
    18961 gttctttgat ctcattatca aaagcattgg ttttaggtaa atcaaagtgt aaaatatttt
    19021 tatcaaaaag ccctaaattt aaaatttcat tttgtaggtt tttgatcgtt gtttctaaaa
    19081 tttcattttt gctttcaaga tga
//
LOCUS       DARGEX010000021        18446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.021, whole genome shotgun sequence.
ACCESSION   DARGEX010000021 DARGEX010000000
VERSION     DARGEX010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.021"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            100..696
                     /locus_tag="SF010_000603"
     CDS             100..696
                     /locus_tag="SF010_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG8229555.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            815..1903
                     /gene="flhB"
                     /locus_tag="SF010_000604"
     CDS             815..1903
                     /gene="flhB"
                     /locus_tag="SF010_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG8229556.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(1909..2652)
                     /gene="motB"
                     /locus_tag="SF010_000605"
     CDS             complement(1909..2652)
                     /gene="motB"
                     /locus_tag="SF010_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG8229557.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(2655..3431)
                     /gene="motA"
                     /locus_tag="SF010_000606"
     CDS             complement(2655..3431)
                     /gene="motA"
                     /locus_tag="SF010_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG8229558.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPKISQFDKG"
     gene            complement(3447..6086)
                     /gene="polA"
                     /locus_tag="SF010_000607"
     CDS             complement(3447..6086)
                     /gene="polA"
                     /locus_tag="SF010_000607"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8229559.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEHKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISV
                     SQEGYEADDIIASFVRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPHQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYENLEVQDLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            6247..7608
                     /locus_tag="SF010_000608"
     CDS             6247..7608
                     /locus_tag="SF010_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HEG8229560.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGYLGDKHGRKNVMMS
                     TVALMGISTTLIGFIPSYAVIGVWAPICLVILRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDRFGRRITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            7605..8612
                     /locus_tag="SF010_000609"
     CDS             7605..8612
                     /locus_tag="SF010_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG8229561.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYAYKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(8568..9011)
                     /locus_tag="SF010_000610"
     CDS             complement(8568..9011)
                     /locus_tag="SF010_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8229562.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(9016..11841)
                     /gene="uvrA"
                     /locus_tag="SF010_000611"
     CDS             complement(9016..11841)
                     /gene="uvrA"
                     /locus_tag="SF010_000611"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG8229563.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKDAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(11914..12699)
                     /locus_tag="SF010_000612"
     CDS             complement(11914..12699)
                     /locus_tag="SF010_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8229564.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            12821..12910
                     /locus_tag="SF010_000613"
     CDS             12821..12910
                     /locus_tag="SF010_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229565.1"
                     /translation="MFQNIIKYKDFIIFILNLKQNLYLLIKIN"
     gene            13112..14362
                     /locus_tag="SF010_000614"
     CDS             13112..14362
                     /locus_tag="SF010_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8229566.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
     gene            14359..15960
                     /gene="trpD"
                     /locus_tag="SF010_000615"
     CDS             14359..15960
                     /gene="trpD"
                     /locus_tag="SF010_000615"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG8229567.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQLAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            15947..16546
                     /locus_tag="SF010_000616"
     CDS             15947..16546
                     /locus_tag="SF010_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG8229568.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            16543..17721
                     /gene="trpB"
                     /locus_tag="SF010_000617"
     CDS             16543..17721
                     /gene="trpB"
                     /locus_tag="SF010_000617"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG8229569.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            17714..>18446
                     /locus_tag="SF010_000618"
     CDS             17714..>18446
                     /locus_tag="SF010_000618"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG8229570.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSETFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGMDIHSVFKLLARIKIKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIE"
BASE COUNT         6056 a         2621 c         3173 g         6596 t
ORIGIN      
        1 tttcttaaat ttttaatatt attttagata tttaaaaaaa aataaagatt taaacgatat
       61 aatttcgtta tcaataaaat ttattattta ggagaaaata tgatagttac taaaaaagct
      121 ttagatttta ctgctccagc agtattggga aacaatgaaa ttgttcaaga ttttaatctt
      181 tataaaaaca taggtccaaa aggagcggta gtattctttt atccaaaaga ttttactttt
      241 gtttgtcctt cagaaattat agcttttgac aaaagatatc aagaatttaa aaaccgtggc
      301 attgaagtaa ttggaatttc aggagataat gaattttcac attttgcttg gaaaaatact
      361 ccagtaaatc aaggtggtat tggtcaggtt aaatttccgc ttgttgctga cttaactaag
      421 cagattgcta gaaattttga tgtactttat gcagaagcag ttgcccttcg tggttcgttc
      481 ttgcttgatg ctgatggaac agttcgccat gctgtggtta atgatttacc actaggtaga
      541 aatatagatg aaatgttaag aatggttgat actatgcttt ttacaaatga gcatggtgaa
      601 gtttgtcctg caggatggaa taagggtgat gaaggtatga aagctaaccc taaaggcgtg
      661 gctgaatatc ttggcaaaaa cgaagctaaa ctttaatttc ttagtataaa gcctctttac
      721 gaggcttttt cttcattttt attctttaat tgaaattcat aaattttcta ctataatttt
      781 acacacatat taaaattttt atttaggcta aaatatggca ggcgaagatc aagaaaaaac
      841 agaagaaccc acgtccaaaa agatagaaga tgcgcgtaaa gaaggtaatg ttccaaagtc
      901 tcaagatgcg gcagctattg taactttgat aattggagta actataactt tatttatgat
      961 gagttttatg ggcgagagaa ttgtaaattt atatagatac tatcaaagtt ttattggtgt
     1021 tgaatttgat ttgcgtatta ttcaagccat tatgattaaa agcatttttg aggttttaat
     1081 tattcttgca cctattgttt taagtattat gattgctggg gttttgggaa atattatgca
     1141 atttggtttt atttttacaa ctaaacctat tatgccaaat ttaggaaaaa tcaatcctct
     1201 aaaaggttta aaaaaccttt tttcattgaa aaaaattgtt gaaagtataa aaattatttt
     1261 aaaagtgggt attgttttta ctatagcttt tatagtttta cttaaattta tgcaagagct
     1321 tccaagagtt gagctttata ctatggttgc acagcttact tggctaagag acagagctat
     1381 tgttttagca gctattgtta tagttgcttt tttaattatt gctgttttag atgttttttt
     1441 ggtgcgtttt cagtatttta aaggtttgcg tatgagcaaa caagaaataa aagatgagta
     1501 taaacaaatg gaaggagatc ctcaggttaa aggtagaatt cgtagacttc aaatggaagc
     1561 tgcgcgtcgt cgtatggttc aagatgttgc aggtgcggat gtggtgatca caaacccaac
     1621 gcattatgcc gtagctattc gttatgatac aagtaaagaa caagccccta gggttgttgc
     1681 taaaggagtg gattttctcg ctcttcgcat aaaacaagta gcctatgaaa ataatgttgt
     1741 agtttatgaa aatcctcctt tagcaagaga gctttataaa gcttgtgatg ttaatgatct
     1801 tattcctagg gaaatgttta aagctgtagc tgaggtgcta ggatttgttt ataatacaaa
     1861 taataagagt cgtttagctg gtcaagtaaa aaaaggaaac taaaactttt aaggtgcttt
     1921 agttcctatt ttgttaataa gctcaagaac cgatttttga gtacttgtat ctgctgtatc
     1981 aactttaaaa tatatttcta ctctattatt ttctagagct tgtggatttc cattgatagg
     2041 attattaagc ccgtagcttt taatgctaat gttttttaaa tttgctccac cttctataaa
     2101 atattttaat acattttccg ctctttggta ggcgagttca taacttctta taatagagtc
     2161 gctattgtct gtatagcctc taatttctat ttttgcttga ggtggcaaat atgttgttag
     2221 ttcagccata cgttttaaat aatcttgtat atcagctgaa acgatttgag cgctacctct
     2281 ttcaaattca actttagatg gaaggttaag agcaacctga ttgtcgcttt gatctagagc
     2341 cgcttgaaga cgtttgatag tttcttgctg cgtcatagtc atttgtttta atgatttgag
     2401 ttcatcactt tcttcttttg ctgcgccttt atatttttct tgagttttac tctcttcttt
     2461 gactgtttga gtagaggtgt aatcaaagat tttaacaaat tcagttttta aagcctctac
     2521 tttagcagga tttgttttag aaattgccca aagagcaata aaaagtgcca aaagcaaact
     2581 tagaaagtct gcataaggta cagcccattt ttcacctgca ggacattctg gacatttatg
     2641 tttcttggcc atttttaacc tttatcaaat tgtgaaattt ttggatcatc gtgacttaag
     2701 aaattaaaaa gcttagcttc caaatctcta gggttcgcac cttctgcaat tccttttatg
     2761 gcttcagtga tgacaatttg ctcttttaca agatccattc cgttagcttt catttttctt
     2821 ccccaagggg caaaaagcgc ataagcacca aaaatcccag taaccgtagc tgtaaaagca
     2881 cctgaaatac ccgctgccat tgcctgagga ttatctagta atttaagagc tagaataaga
     2941 ccaaaaaccg caccaacaag tcccatagta gggcaagttt ctccaaatac tatccaatat
     3001 tctgcgcatt ctttataatg ctcttcaagt tgttcggttt gtatttccat gctttcgtga
     3061 atttcttcaa agcttttacc atctacaagc atcatcatag cattttttaa aaattcattt
     3121 tcaatctcat tggttcttga ttctaatgct aaaagaccat ctcttcttgc aataatagca
     3181 aattctatta actgggctat cctttcaggt agatttactc cagaaccttt aaagacaact
     3241 ttgagttctt tataagctgc ttttacaatt tttttatgtg tagaagtcat tgcacaaaat
     3301 gcagccgttg gcataactat aagaaaggaa gaaagatgca caacatgtaa aggattacca
     3361 ccttctagta tatctcctac tgaaatacta gtaactgcaa gcaccattcc cagtatggtt
     3421 gaaagatcca ttaaatatct ccttgattat tttaaatcgc cccaattttt ggcgatactt
     3481 gagcttgttt ttaattttac ttttaatttt actatatttt ccataatatc tctagttttt
     3541 ttcacaaaat tttcacataa atcatctttt acttcaaaaa ttaattcatc gtgaatttgc
     3601 aaaataagct ttttatcttc atttaattcc ttgttgattt ctaacattgc aagtttgatt
     3661 acatcagctg ctgagccttg taagattgaa ttaatgcttt ctctttcata catggcaatt
     3721 tgcataggtt ttgcgttttc aaaatcaaaa taacgcttgc gaccgcttaa agtagtgata
     3781 aaaccatttt gtttagcttt gtttttaact gtttcaaaat atttcttaat actagtaaaa
     3841 ttttcaaaat atttttctat gtaagatttg gctaaatgag cttctatttt taaattttga
     3901 cttaaagttt tatagcccat gccataaata agtccaaaat ttatactttt tgcaacactt
     3961 ctggtttcat aattgctttc tccaaaaatc attatagctg ttcttgcatg tatatcttca
     4021 tcgttagcaa aagcatttaa aagtttttca tcttcgctaa aatgcgcaag cattctcagt
     4081 tcgatttgag aataatcaag agagataaaa ctaaatccat ctttagctac aaagcaagat
     4141 ttataatctt ttgcgtattg tccgtgtgca ggaatatttt gcaaatttgg atctttagat
     4201 gaaaggcgtc ctgtagcggt tccagtctgt aaaaaacttg aataaatgcg tgaattttta
     4261 tcttttaacg ctagttttaa caaaggttcg caataagtgg aataaagttt ggcaagttct
     4321 ctataatcta aaattttggc aattacagga tgtttatcta aaagtgcatt taaaactttt
     4381 tcatcggtag aatatcctgt ttttcctttt tttccacttg gaagtttaag tttttcaaaa
     4441 agtatatcac ctacttgttt aggtgagttt aggttaaatc tatcctcaca aagagtataa
     4501 atttcttcac ttaaattttt gatttcattt tcaaattttt tcataaggat ttcaagtgca
     4561 tttgtatcaa gctttatgcc attttcttcc atcatcataa tgattttaat gaaatcaaat
     4621 tcgcagtttt tagcaagttc tagcaaagga gtttcaagat tttttaaaaa ataaagataa
     4681 aatcttaaag tgatataagc atcttccgca gcatatttgc aagctttttc aagctctaca
     4741 cttgcaaaat tttctccttt tttaacaagg ctttcaaaat gtaaggtttc ataattaaaa
     4801 agtcttaaag ctaaatcatc catatttact cttaaagaag gatttttaag ccatgctaaa
     4861 atcattgtat ctgcgtattt ttgaggtaaa tttaatccaa aattgttttg aatgatttta
     4921 aaatcatatt tgagattgtg tcctataaca aaatgattaa agattacttc tatagctttt
     4981 ttggcgcttt gcaatgagat ttgctcacct actccaagat agttatgagt taaaggcacg
     5041 taaaaagctt cattttcact catgcaaaaa ctaaaaccaa caatttttgc ttcttttgta
     5101 tcaagtcctg tggtttcggt atcaaaagca ataatacttt ctttatcaag ggtatttaaa
     5161 atttcaaaaa gtttgttttc atcttgtatt aaagtggctt taaaacctaa atttttatct
     5221 ttattatcag gattttgacg cagtttttta agcaaagtat taagttcgta atgttctaaa
     5281 atttcaagta tttttaaaag aggttcttca tcaggataag ttgctttttc tataagatct
     5341 tgcacttcta aattttcata caaagaggct aattttttgc ttaaaaatgc attttcctta
     5401 ccctctaaaa gcaaattacg acttctttcg ttgcgtacta gggttaaatt ttcataaatt
     5461 ccttctatac taccaaattc atcaagtaag gttttagccc cttttgcacc tataccttta
     5521 acgcctggaa tattatcaga actatctccg caaagagcta aaaaatctct gatttgatga
     5581 ggttttactc cgtatttttc taaacacgct gcttcatcat agtcgttttt agaaatagga
     5641 ctgtaaatgc ttgttttacc atcttttatg agttgataaa gatctttatc ttgagtgata
     5701 atgcgtacaa aaatatccct atcttcacaa gttcttacaa aagaagcgat gatatcatcg
     5761 gcttcataac cttcttgaga aacgcttata aaacccattt tttctatcat ctctatgcaa
     5821 attggaattt gttctagaag ttcaggtggt ggtggagtgc gattttgttt atagtttgga
     5881 tcaatttcgc tacgaaaagt ttttcctttg gagtctaatg caaaaacaat ataatcactt
     5941 ttatgttcat tttttaagct ataaataaaa tttgcaaaac cgctaatcat tccactagct
     6001 tgtccttgtg aatttttaaa accttttaat gcgtagtaaa gtctgaaaaa aaatccaaaa
     6061 gtatcgataa tagttaaagt tttcataata atttcttctt taataaaata tatttttaag
     6121 ctgtattatt tcaaaatttt gcttaaaatg tctacaattt aagatcttta agcaaaaaca
     6181 ctgcaatttt tagccataat tacaaattat ttataaaaaa atatattaaa atataaggat
     6241 aatgtaatga caaatcagca aattgatgga attgcggata agaattttaa tacacctgaa
     6301 ggtaggaaag tttttaaaaa ggcagttttt tcttgctggt tgggaactgc tatggaatat
     6361 gcagattttg cactttatgg tttagcagct gcaacaattt tttcagaagt attttttcct
     6421 gagcaaactc cagtaatcgc acttttgctt agttttgtaa cttatggcat aggttttatt
     6481 gcaagaccta ttggggcttt gttttttggt tatttaggtg ataaacatgg aagaaaaaat
     6541 gttatgatga gtactgttgc tttaatggga atttcaacta ctctcatagg ttttattcca
     6601 agttatgcag taattggtgt ttgggcgcct atttgtttgg ttatattacg ttttatgcaa
     6661 ggttttggtg caggagctga actttcaggt ggaacagtta tgctaggaga atatgctcct
     6721 agcaagagaa gagggcttgt ttcttctgtg attgctttag gatcaaatag tggaacttta
     6781 cttgcgtctt ttgtgtggct tttgatggtg caaatggatg aggcaagttt taaagaatgg
     6841 ggttggagag ttccttttat gggaagtatt ttaatcgctc tttttgctgt atatattcgt
     6901 tttcatgtca aagaaacccc tgtttttgaa aagcaaaaaa atgaaatgat gaaattgcgt
     6961 cttaataacg aaaagcatat gaaaaaagat gaaagaagtt tttggcaaag aagtcgtgct
     7021 ttttggacta tggtgggctt aagaataggt gaaaatggac cttcttatct tgcgcaaggt
     7081 tttattgtag gttatgtgac taaaatttta cttttagaca aatcagtagc tactacagca
     7141 gtgatgatag cttcattggt gggttttttg gttattcctt tggcaggtta tttaagtgat
     7201 agatttggaa gacgtattac ttatagaatg ttttgtttac ttttgatgat ttatgctttt
     7261 cctgctttta tgcttttaga tagtaaaaat gaaattattg tgattttaac tattattgta
     7321 ggtatgtctt tagcatcttt agggattttt ggtgtacaag cggcttgggg tgtagaactt
     7381 tttggggtaa aaaaccgtta tacaaaaatg gcttttgcta aggagctagg ttctattctt
     7441 tcaggaggaa cagcgcctat ggtggcttct gctttgcttg cgtattatgg cacttggtgg
     7501 cctattgcga catattttgt attaactgca ggtataggtt ttgtgactac attttttgcg
     7561 ccagaaacta gaggtagaga tttaaataaa atagaagatg cgatatgaga cttatcttag
     7621 acacagatat aggcaatgct attgcaggag caaataccga tgatggttta gcgcttgctt
     7681 tgattttgtc atctaaagaa atcaaacttg aaatgctaag cacagtttgc ggtaatgttc
     7741 caagccttgt tgcctatagt gtggctaagg atttatttaa acgtttaaat ttaaatatcc
     7801 cagtttattt gggagcgaat gaagccctaa aagaaccaag taaagcttgg cgtcaaagac
     7861 ttgatgaaag tgttaaaaat tttaaacttg aatatctttg ggaaaatata aaaagtcctg
     7921 aaattttaga aaatataaat cctgatgcga tttttaaaat gggtgagttg gtgagtaaaa
     7981 atcctaaaga aatttctatt tgtgcgatag gacctttgac aaatatcgct atgactatga
     8041 aaatttttaa agattttgat ataaatctta aagagctttt tattatgggc ggcagttttg
     8101 atatgcctta ttacactaaa gatacaaatt ttggttttga tcctgaggcg gctagtatag
     8161 tgctaaattc aagagctaaa attacactca taccttataa tgcaaccatg cagactttat
     8221 taacacacga ggatttaaaa gagttgcaag gtaagaatat tttatgtgat tttattgttg
     8281 aaactttagg tgtttggatt gattatgcct ataaaacacg tggtacaaag ggaacttgga
     8341 tacatgatgc tttaacgata gcttacgcat tagattctag tattgcagat tttgatgagt
     8401 gttatgctga tgttatttgc gatagttctt tggcaagagg tatgagttgg cgttgtttta
     8461 aagaaccaaa aatgagtatg ggggtggatt taagcactaa aaattgtgtt aaaattctaa
     8521 aaaatgtaga caatgcaaag cttttaaaac ttataaaaga gaggttttta aaaggagttt
     8581 gctatgaaaa ttatgaaagc ataacgactt aattttccaa gtaagataaa aaatatagtt
     8641 tttaaaaaag aatatttcgc aaaaccaagt cccaaggcaa aaagatctcc tactaaaggt
     8701 aaaaaagtaa aaaaagcaaa tatacttcca aatttagcaa aattagcatt gaaattttct
     8761 aattttttta aggatttgct aaagtatttt tctaaaattt tttcttttcc aaaatacgct
     8821 aaagcataag tacttaaact tcctaaggta ttacccaaag tggctacgat aagtaccaaa
     8881 ttcggattaa aatcaagttt tataaagcct aaaacaaagg cttcacttgc taagggtaat
     8941 agtgtgcttg aaagaaaaca caccatgaaa agccccaaat agctaatatc attatataaa
     9001 aaatcaaaca taaaattatg atttttgtgt atttttaagc tctaagtcta gataatatcc
     9061 tgtgtaagaa cgggtttttt tgtgttcttt agcgactttt tccacgcttc ctgtgcttat
     9121 aacttttcca cctttaactc cgccttcagg ccccatatcg atgatataat cagcattttt
     9181 aatcacatct aaattatgtt ctatcacaaa aacagaattt ttaagatcaa ctaaatgttg
     9241 taaaactaag atgagtttat tgacatcttc aaaatgcagt cctgttgtag gttcatcaag
     9301 tatataaagc gtttttcctg tatcgctacg gcttagttct ttagcaagtt tgattctttg
     9361 tgcttcacct ccacttaagg tggtggcatt ttgtcctaga gttagataat ctaaacccac
     9421 ttttactaga gtatctaatt tttgtttgat tttaggaacg gctgtaaaaa attcactcgc
     9481 ttctaaaaca ctcatattta aaatttcact gatatttttg cctttatatt tgatttctag
     9541 cgtggcatca ttgtagcgtt tgccctcgca agtatcacaa actaccataa catcaggtaa
     9601 aaaatgcatt tctattttga tttctccatc tccgctacat ttctcacatc ttccaccctt
     9661 gacattaaaa gaaaagcgtc cagctttata accacgcatt ttggcttctt tagtggcggc
     9721 aaaaagattt ctgatttcat ccatagcacc tgtataggtg gcaggatttg aacgtggtgt
     9781 gcgcccaatt gggctttgat caagataaat gactttatca agtttttcaa gtccttctat
     9841 ttgtactccg ccaagttttt taactttttt cgcacggttt aattcctctt gtgcaaaagg
     9901 aagtagggtt tgaagtatca aagagctttt tccagaacct gaaactcctg ttatagcgac
     9961 taaattttgc aaaggaaatt ttacgcttaa atcttggata ttgttaatat ttacattttt
    10021 aagctcaagc cattctttct gtgttctgtt ttgaagttgt gaaatttgtt ttttaccatt
    10081 catataaagt gcagtttcgc ttttgctttt taaaagttct ttataagttc cactaaatac
    10141 aacctcaccc ccaaattttc ctgcttttgg accaatatct acaataaaat ctgcttcttc
    10201 tatggtcatt ttatcatgct ctacgacaat tagggtattg cccttttgtt gtaaatttct
    10261 taaagtttta atcagttttg cagtatctct ttcatgaagt cctatgctag gctcatctaa
    10321 gacatacatc actccgctta aaccactgcc aatttgtgaa gctatgcgga ttctttgtgc
    10381 ttcaccccca ctaatcgttc ttgcatcgcg ccctaaagaa agataaccta gccccacatc
    10441 atacaagaaa aacaatcttt cgttgatttc ttttaggata ggtttagaaa taagtttttg
    10501 ttgctcgctt aaataagaaa aatttttctc atctgcaaaa aaggccgtac tatcttctat
    10561 gctcatatct aaaatttcac ccaagctttt tttggctact ttcacggcta aactttcggg
    10621 ttttaaacga tgcccaccgc agtctttaca aattttttca ctcatatatt cggctaaatc
    10681 tttttcatct tttagcattt cataagccat tttaaccacg ccttcaaaag tgcgttttag
    10741 gcgatttctt ttccaaagaa attctatagt tttggcatta ccatacaata caagacgttt
    10801 ttgttcttcg tttaattgca taaaaggtat tttgatagga atttcatttt gttcgcaaaa
    10861 ggcgattagg aatttataat aataactttt attaaaacca tacatgattt taacagcacc
    10921 gttttcgaga cttaaatttt catcgatgat ttttttcata tctaaagtat aacgaattcc
    10981 aagtccatcg caagcttcac atgctccttt tggagaatta aaagaaaagc ttaaaggttc
    11041 aagtggaaca aaggaaattt tacaatcaaa acaagctgaa tgctcgctaa aatgatagtg
    11101 tttattaagg tttatttcct catgatttaa aacttctatt tctatttctc caaagctttc
    11161 ctgtaaacct ttttctatat cgcttgcaag acgagaaagt aaatcttctt gaatttcaag
    11221 tctatctatg acaagtttaa tggtgtgttt tttggttttg gctagttcaa tttcttcatc
    11281 aagtcttacc aaaactccat caatttgagc tcttacatag cctttgttgc gtaaattttc
    11341 aagcaaatct gcataagttc cttttttttc tcgtatgagt ggggcgtaga tgatgatttt
    11401 tgcatctttt ggaaatttta aaatttcact gactatatca cttacactca tagatgaaat
    11461 tttttgtcca cattgatgac aatgttgaat gccaactctt gcgtataaaa gtcttagata
    11521 atcataaatt tcagtgatgg ttcctacagt agagcgtgga tttttagaag tagttttttg
    11581 atctatggca atggctggag ttaaaccttc gattttatcg acatcaggtt tgcctacctt
    11641 atctaaaaat tgtctggcgt aagcacttaa actttctata taacggcgtt gtccttcagc
    11701 ataaagagtt ccaaaagcaa gggttgattt tccacttccg ctcagtcctg taaaaacaat
    11761 gagtttgttt ttgggaattt caaggtggat attttttagg ttattttctc ttgcgccaat
    11821 gatttttatg gtatcgttca tagtctttcc taaacattaa ataaatttaa gattttagca
    11881 taataatatt aaaagaactt ggataaatcc aagttaaaaa tttataaaat ttagcttatt
    11941 aagcaaagag tgggtggttc caagtattga caaggcatat acgcaaagta aaatttttct
    12001 atgagctgaa atatgcattt tttctatgat tttaattcct ataaaaactc caaccataga
    12061 agctatacct actagtattc ctttatgaat aacttcagag tctataactc cagaatttga
    12121 aaaagatata ataccagaga ctgaagcaaa aataacaaaa aacaaggata aggaaacaac
    12181 ttttttacta tcatagccta aaaaataagc taaaatcgga gcaattaaaa gtccgccacc
    12241 aattcccaaa gaaatagcaa aaataccagt aaaagctcca gcaataaata aaatgacatt
    12301 ctttacccaa acgcttcttt gattttgcac aatgttttct ttaattccaa aagcatattt
    12361 gataaaaaat atacaactta ccgccaaaaa tacgctagta agagctacat cacttaaagc
    12421 ttttaaaagc attccgctaa agcttgcccc tatgagccct ccaaaaccta tcataatacc
    12481 atctttaaga tttagatttt ttttcttata attaatataa gagccaaaaa ctgctgcaaa
    12541 aatcatttgc aatactgaaa ttccgatagc atggtgagca cttgctccaa gtgcgaacat
    12601 agaaggaacg ataatcatac ctccaccaat gccaaaaagt ccagaagcaa tacctgaaat
    12661 gattcctatg attagataag gtaaatctgt gatttccata gcttttccta aaaaatatta
    12721 aatatttcaa atacggaata attttatctt attaagctaa gtattatctt agttttttat
    12781 aacaatagaa tattttttgg taactttaag catcgtaaaa atgtttcaaa atattataaa
    12841 atataaagat tttataatat ttattttaaa tttaaagcaa aatttatatt tattgattaa
    12901 aattaattaa gactttaaaa attttcataa aagtcttaat ttttgaaata ttttataaga
    12961 aaggtaaaag atgagtgaaa atgatttttt tagtaattct ttgattttaa aacttacaca
    13021 cactcttcgc tcttggcgtt tctaaacttc tttttatcta aattttttct ttaatattat
    13081 tttaatttat ttttttaaaa aaaggtttat tatgtttgtt aaaaatgtaa atttttatta
    13141 tagacaaatc cttgaaaaat ttgaaaattc ttattttgca gaggatttga ctaaggtaat
    13201 tatagggatt gattgtgatt atttagatgc taatgaatta tcctttagcg agtttaaggc
    13261 aaaatattat gaagctttaa gcaagaataa aatttgcgac tttgctggat tttttggagt
    13321 ttttagtgca aattttgtat ctttgtttga aaaaattcca ctttcttcta agaaaaatta
    13381 tgattttcct ttatttttat ttgccaatgc taaggcttat ttgatttatg agaaaaatag
    13441 caagatgttt tttaaatttg gtgcttcaaa atattttgaa tatttaaaag atgatattga
    13501 accaatgaaa aagaaacaaa aaaatgattt tgaaatttta aattctttag aagatgaaaa
    13561 aaatgatttt ttaaaaatgt gcgaaaaagc caaagaatat cttttaagtg gagatatttt
    13621 tcaagtggtc ttaagtaagc aactttgtat caaacatcaa gtaaatgctt ttgattatta
    13681 tgagagttta agtgctttaa atccaagcgc ttatatgttt tattttccaa gtaaatatgg
    13741 tgttgttttg ggttcttctc cagagttttt attgaaaatt aaaaaaagag agatttattt
    13801 agcccctatt gctggaacta gaaatttgga aaataactgt gatcttttag ctttagaaaa
    13861 agatctttta agtgatgaaa aagaacttag tgaacataag atgcttgtag atttagcaag
    13921 aaatgatgct tctaaatttg gcactcaaac aagagtggaa aatctttttt ctattattaa
    13981 aaataaattt gtaatgcaca tagtgagtga agtgtatgcc aatatgaaag aagatgcgag
    14041 tatttttgat gtgattgaag cagtttttcc agcgggaact ttaagcggag ctcctaaaat
    14101 aagagcttta gagatcacta gcgagcttga agattgcgat cgtggaattt atggtggtgc
    14161 ggtaggattt ttaaatttta acgaagacat aactttagcg attttaatcc gttgcgcttt
    14221 ttttactcaa gataaggctt atttggcaag tggggcgggt attgttttgc aaagtgagag
    14281 tcaaaaagaa tatgcagaaa tttgtgctaa acgcaaggcg cttttggtag cttttgaaaa
    14341 tttaaaaaag gaaaatcaat gatactttta attgataatt atgattcttt tgtttttaat
    14401 gttaaaagca tgttagagca actcagcaat gatgaaattt tagtaagaag aaatgatgca
    14461 atttctctga gtgaaattaa aaatttaaat cctactcata ttattttaag tcctggtcca
    14521 aagcatccaa gtcaaagtgg gatttgtctt gaaattttta aagcaaggct taatatccct
    14581 gttttgggca tttgcttagg gcatcaagct ttagctttag cttttgattc tttagtggtt
    14641 aagatgcaag agcctatgca tgcaaaaaat tctttgataa aacagtgcag ggaaaatgaa
    14701 ttattttcta atttgccttc aaattttagt gtaatgcgtt atcattcttt agaggttaaa
    14761 cagcttagtg atgagcttga aattttagcc cttgatgaaa agggtgtgat tatggctttg
    14821 ggacataaaa atttacctta ttatggtgtg caatttcatc ctgaaagcta ttttagtgaa
    14881 tatggcttac aacttttttc taatttttta aaacaagata taaaaaaacc acaaaaacaa
    14941 gaaaatcctt taagttttta tttgcaaaaa atgagtgaaa atcatttttt acaaagcgat
    15001 gattttgagc aaatttgtaa gattattatg tctaaagatt atgaaatttt acaattagcg
    15061 gctttgttga ttttaatcac tgaaaagtct ttaaacgaaa aatctttaag tgcttttgta
    15121 agacaaattt taagatattc tcaaactttt agtgatgaga gtgagatgat tgatatttgt
    15181 ggaacaggtg gagatggttt taaaagtatc aatgtttcta cgactagtgc ttttatttta
    15241 gcagctttag gagtaaaagt agccaaacac ggaaatcgtg ccatttcaag ttctagcgga
    15301 agtacagatg tgttagaagc tttaaatata actactccaa acactttaga atcagtttta
    15361 aaacaactaa ataatcaagg gcttagtttt ttacatgctc cattttttca tcctttggta
    15421 ggagaactta aagaggtcag atcaagactt ggagtaagaa cggtttttaa tgttttaggt
    15481 cctttattgc accctaattt aaagttaaaa tatcaactta tgggaaatta tcacgcacct
    15541 gtgcataggc ttttgataga ggttttaaaa aatttaggac gcaaaaaagc tttagtggta
    15601 agaggaaatg atggtatgga tgagcttagt atttgcgatg aaagtaaaat ttatgagctt
    15661 tgtgaaggag aaattttaga gtattctatc tgtcctgaac aatttggttt taaaagagct
    15721 tttcatagtg aaatcatagg atctagtgca tatgacaacg ctaaagattt aaaagatatt
    15781 ttaagcggta gaatgcaagg ggcaaaattt gatttggtag ttttaaatgc tatgtttgca
    15841 ctttatacag ccaataaagc aagttcgcct ttagtggcta aagatatgat tttagaagcc
    15901 atttattcag gtaaggttat agaatatttt aaggagtatc aagcttatgc taaagcttaa
    15961 aatttgtggt attaaagatg aaaaaaatgc caaagattta gcttttttaa atattgattt
    16021 ttttggactt atttttgcta aaagtccaag aagagtgagt ttagaacaag caagaaattt
    16081 aagtgcaatt tttcatgaaa aagataaaaa agttgtcggt gtttttgtag atgaaaattt
    16141 ggaacaaatt ttaagatgta ttaaagaagc taagcttgat gggatacaaa tttatcgcac
    16201 tattaccaaa gaagaatttg aaattttaaa ggtgcaaaat gtttttgttt ggcaggtgat
    16261 tagtgtggaa aatagtttag atttaaaaag tgaaattttt gctaatttag tactttttga
    16321 tgctaaggga attttaaagg gcggtaatgg aataagtttt gattggactt tattaggttc
    16381 ttatactaaa gattttgcat tagctggagg cataggtttg gataatattc ataaggctgt
    16441 acaaacggga gctaaaattt tagatcttaa ttcaaaactt gaagatgaaa aaggcttaaa
    16501 agatatcaac aaaataaaac aaattttaaa ggagttgaaa aaatgaaaaa agcgtattat
    16561 ggggattttg gtgggcagtt tttgcctgaa agtgcaatgt ttgctttaaa tgagctagaa
    16621 ggtgcttttt tgaaattttc taaagataaa ctctttaaaa aagaattaaa cgagctttta
    16681 aaaacttatg tagggcgtcc tactccactt tattttgcta gaaatttaag caaaaaatat
    16741 cagcatgaaa tttatttaaa acgcgaggat ttaaatcata ccggagcaca taaaatcaat
    16801 aatgccatcg ctcaagccct tttagcaaaa aaaatgggaa agaaaaaaat catagcagaa
    16861 acaggagcag gtcaacacgg gcttgcaaca gccactgcag cagcactttt aggacttgaa
    16921 tgtgaaattt atatgggggc aaccgatgtg caaagacagg ctttaaatgt ttataaaatg
    16981 gagcttttgg gtgctaaaat tcatgcagta caaagtgggc ttaaaactct aaaagaagct
    17041 actactgcgg ctattcaagc ttgggttgga gatattaaaa atatttttta tgtggttgga
    17101 agtgcggtag gtccttatcc ttatcctaaa atggtaatgc attttcaaag tattatagga
    17161 aaagaatgca aaatgcaact tcaaaaactc aataaaaaag tagattatat tatcgcagct
    17221 gttggaggtg gaagcaatgc agctgggatt ttttatgatt ttatcaaaga tgaaaatgtt
    17281 aaacttatag gtattgaagc aggggggctt ggcattgata cgccttatca tgcagcgact
    17341 ttaaataagg gaaaaacagg cattattcac ggtatgaaaa ccaaggtttt acaagatgat
    17401 ttaggcaata tcttgcctgt acatagtgtt tctgcagggc ttgattatcc aggaattggt
    17461 cctttgcatg cttttttatt tgaaagcaaa agagcgcaat atcatgctat aagtgatgaa
    17521 gaatgtatgc aggctttaaa attactttgt aaagaagaag gtattattgc agcgattgaa
    17581 agttcgcatg ctttggcatt tttagaaaaa ctttgtccaa ctttaaaaaa gaaaagcgtg
    17641 atagtagtaa atctttcagg caggggagat aaagatatgc aaatgattag agattataaa
    17701 aaaggggtga tttatggttg attttagaaa attttataaa gaaaatgcaa atgtggctta
    17761 tacggtttta ggttatccaa atcttcaaac aagtgaaact tttttgcaaa gattggatca
    17821 aagccctatt gatattttag aacttggtgt tgcttatagt gatcctattg ccgatggtga
    17881 gattattgca gatgcggcaa aaatagctct tgatcaaggc atggatattc atagtgtttt
    17941 taagctttta gctaggataa aaattaaaaa agctttggtt tttatggttt attataattt
    18001 aattttttct tatggcttgg aaaaatttgt gaaaaaagca aaatctttag ggatttgtgc
    18061 tttgattgtg cctgaattga gttttgaaga aagtgatgat ttaattaaag agtgtgaaag
    18121 atataatata gctttaatta cacttgtaag tgttacaacc cctaaagaaa gggttaaaaa
    18181 gttagtaaaa catgctaaag gttttattta tttattagca agcataggta ttacaggtac
    18241 gaaaagtgtc gaagaagcaa tcttacaaga taaagtaaaa gaaatcagat cttttacaaa
    18301 tttgcctatt tttgtaggct ttggcattca aaataatcaa gatgtaaaaa gaatgagaaa
    18361 agttgctgac ggagtgattg tgggaactag catagtaaag tgttttaaac aaggaaattt
    18421 ggatataata atgaaagata ttgaag
//
LOCUS       DARGEX010000022        18265 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.022, whole genome shotgun sequence.
ACCESSION   DARGEX010000022 DARGEX010000000
VERSION     DARGEX010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18265
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.022"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            78..368
                     /locus_tag="SF010_000619"
     CDS             78..368
                     /locus_tag="SF010_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEG8229571.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            355..984
                     /locus_tag="SF010_000620"
     CDS             355..984
                     /locus_tag="SF010_000620"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG8229572.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            1102..2448
                     /locus_tag="SF010_000621"
     CDS             1102..2448
                     /locus_tag="SF010_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8229573.1"
                     /translation="MGQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVGFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            2497..3939
                     /gene="pyk"
                     /locus_tag="SF010_000622"
     CDS             2497..3939
                     /gene="pyk"
                     /locus_tag="SF010_000622"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG8229574.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            4037..4672
                     /locus_tag="SF010_000623"
     CDS             4037..4672
                     /locus_tag="SF010_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229575.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIDSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTVNRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4703..7165)
                     /gene="pflB"
                     /locus_tag="SF010_000624"
     CDS             complement(4703..7165)
                     /gene="pflB"
                     /locus_tag="SF010_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG8229576.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLVRLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDITKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(7175..8410)
                     /gene="serS"
                     /locus_tag="SF010_000625"
     CDS             complement(7175..8410)
                     /gene="serS"
                     /locus_tag="SF010_000625"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG8229577.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(8421..9380)
                     /gene="trpS"
                     /locus_tag="SF010_000626"
     CDS             complement(8421..9380)
                     /gene="trpS"
                     /locus_tag="SF010_000626"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG8229578.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPKAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(9377..9874)
                     /locus_tag="SF010_000627"
     CDS             complement(9377..9874)
                     /locus_tag="SF010_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG8229579.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9861..11243)
                     /gene="der"
                     /locus_tag="SF010_000628"
     CDS             complement(9861..11243)
                     /gene="der"
                     /locus_tag="SF010_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG8229580.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            11345..12277
                     /locus_tag="SF010_000629"
     CDS             11345..12277
                     /locus_tag="SF010_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8229581.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIAYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFDGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            12274..13089
                     /gene="kdsA"
                     /locus_tag="SF010_000630"
     CDS             12274..13089
                     /gene="kdsA"
                     /locus_tag="SF010_000630"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG8229582.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMCEFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGSNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            13086..13550
                     /locus_tag="SF010_000631"
     CDS             13086..13550
                     /locus_tag="SF010_000631"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG8229583.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13550..13948
                     /gene="nusB"
                     /locus_tag="SF010_000632"
     CDS             13550..13948
                     /gene="nusB"
                     /locus_tag="SF010_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG8229584.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            13945..14784
                     /gene="pyrF"
                     /locus_tag="SF010_000633"
     CDS             13945..14784
                     /gene="pyrF"
                     /locus_tag="SF010_000633"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG8229585.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            14781..15566
                     /locus_tag="SF010_000634"
     CDS             14781..15566
                     /locus_tag="SF010_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229586.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIKFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEF
                     RKLKKLEFKILMQETSKIKLLNHYKEFCEEIFYNIELEKITQN"
     gene            15622..16515
                     /gene="msrP"
                     /locus_tag="SF010_000635"
     CDS             15622..16515
                     /gene="msrP"
                     /locus_tag="SF010_000635"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG8229587.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            16515..17087
                     /locus_tag="SF010_000636"
     CDS             16515..17087
                     /locus_tag="SF010_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8229588.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFNDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLIKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(17052..>18265)
                     /locus_tag="SF010_000637"
     CDS             complement(17052..>18265)
                     /locus_tag="SF010_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8229589.1"
                     /translation="LYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEY
                     ALSNESSISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKS
                     FFIIDEILQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLEN
                     ILKQQDKKVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDC
                     SKILSKWVGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMH
                     NQMQNIFLEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFL
                     PKKALFEKDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELN
                     SSFDKSKIVGF"
BASE COUNT         6413 a         2884 c         2648 g         6320 t
ORIGIN      
        1 ctttcagaag ctattgataa aatttctttc atggggaatg gtaaatttta ctacggagat
       61 aaaattttag atttgttatg ataaaaattt tagaacaaac aataaagtct ttaaaattaa
      121 atttaaagcc ctatgactta agtatgttga ctagaaaaaa aagttatatt tgtgctaaag
      181 atcaaaataa cattcttttt atgtatacag gaaaaacaaa atttttaatg aaagatgcct
      241 tatttttaga aaatctagca cagcaaatta acataaataa caaatatttt tttagcatgg
      301 cttctctttg ctctaaagca aaaaatcatc tagaaatgaa aggatttaat atctatgttg
      361 ctctgtgata ttgggaattc aaatgctaat ttcctagatg ataacaaata ttttactctt
      421 agtatagatc agtttttaga atttaaaaat gaacaaaaaa ttttttatat caatgtcaat
      481 gaacatctca aagaacattt aaaaaatcaa aaaaatttta tcaatcttga accttatttt
      541 ttatttgata caatttatca aggattagga atcgatcgca tagcagcttg ttatactatt
      601 gaagatgggg ttgttgtaga tgcaggtagt gctattacaa ttgatattat ttctaattct
      661 atacatcttg gtggttttat cttaccaggt attgcaaatt ataaaaaaat ttatagccat
      721 atttcaccac gattaaaaag tgaatttaac actcaagtta gtcttgatgc attcccgcaa
      781 aaaactatgg atgctttaag ttatggtgtt tttaaaggaa tttacctact gataaaagat
      841 gccgctcaaa ataaaaagct ttatttcact ggtggagatg gacaattttt agcaaattat
      901 ttcgatcacg caatttatga taaactttta atctttcgag gaatgaaaaa gattataaaa
      961 gaaaatccca atttacttta ttaaaaatgt tacaaaaatt ctcattgata tcaaacctta
     1021 atgaaattta actttttgta aaacaaattc aattaaactt tatttagaaa aaagtttatt
     1081 aaaataaaaa aaggaaaaac aatgggtcaa caagaatttg atgtgcttgt catcggagct
     1141 ggaatttcgg gagcagcatt attttacgag cttgcaagat atacaaatat taaaaatatt
     1201 gctttgatag aaaaatataa tacagctgca acattaaatt ctaagggaac gagtaattct
     1261 caaaccattc attgtggaga tattgaaacc aattatactt tagaaaaagc gcgaaaagta
     1321 aaaagaacag ctgatatgat agttaaatat ggactcatgc aaaatgcgca aaataatttc
     1381 atgttttctc atcaaaaaat ggctctagct gttggagata tagaatgtga ttatatgaaa
     1441 aaacgctatg aagaatttaa agaactttat ccttatataa aatttttcga taaagcaaaa
     1501 atcaaacaaa ttgaacccaa ggttgtttta ggagaagatt gcaatcaaga tagacctgaa
     1561 aatatctgtg ccatgggtgt tgaaagcggc gaggttttta caactgtaga ttttgggaaa
     1621 atgagtataa atctaataga acaagcccaa aaacaaaata aaaatacttt cgttggcttt
     1681 aatcaagaaa ttattcacat agaaaaaaaa gatgatattt ttatattaaa aacctcaaat
     1741 catcaagaat accatgccaa aagcgtagtt gtcaatgctg gggcgcactc tttatattta
     1801 gcacataaaa tgaacttagg tatggataag tcttgttggc ctgttgcagg aagtttttat
     1861 ttaaccaaac aaaaactttt aaatggcaaa gtttatatgg tgcaaaatcc taaacttcca
     1921 tttgcagccc ttcatggaga tcctgatttg cttgctgata tgaacactcg ctttggacct
     1981 actgcacttg ttattccaaa actagaacgt tatcatggtc taaaatcagt tccagaattt
     2041 tttgaagcac taaaacttga taaaactgtt ttaaaagtaa cttttaatat gtttaaagat
     2101 gcaacaatta gaaattacat cttttataat tatctttttg aactaccttt tattgataaa
     2161 agcttatttg ttaaagatgc caaaaaaata gtcccaagtc ttaaagcaag cgatatttat
     2221 tatgcgaaag gttttggagg cgtaagacca caagttattg ataaaactaa aggagaatta
     2281 atgctaggtg aagcaagcat cacagaaacc cctggtatta ttttcaatat gactccaagt
     2341 cctggggcaa caagttgttt aggaaatgct gaaagagatg caaagcttat atgtaattac
     2401 ctaggaatgg aatttaacga agataaattt tcttcagaat tattgtaatc attttgtttc
     2461 tatttttagc tacaataatt tcaaaaggag tttaccatgc ttaaaaaaac aaaaattgta
     2521 gccacagtag gtccagcaag tgaaaaggaa gaaattctac gccaaatgat tatcaatggt
     2581 gtaaatgttt tccgtttaaa cttttctcat ggaacacatg agtatcataa aaaaaactta
     2641 gataccataa gaaaagtagc taaagaattg catactcgta ttggaatttt acaagacatt
     2701 agcggtccta aaattcgtac aggtgaactt aaagaaccat ttgaattaaa aaagggtgat
     2761 agacttgatt tttatcgtga aacaatttta ggggagaaga ttgctcaaaa tcattacaaa
     2821 atcagtatta atcaaaaatc cattttagat atgttaaaaa ttgatgaata tatttatcta
     2881 tatgatggat caattcgtgc taaagtagta agcatagatg atcaaaaaat tgaaaccatt
     2941 atagaaaatg atggtttttt aaactcaaat aaaggtatta attttccgaa tactaaaatc
     3001 aatattgatg ttattacaca aaaagataaa aatgatttac tttggggtat aaaaaatgaa
     3061 gtagattttt tagcaatatc tttcgtacaa aatgcgcacg atattgatga agttcgtgaa
     3121 attttagcac aaaataacgc aaaaatatct atttttgcaa aaattgaaaa atttgatgca
     3181 gtagaaaata ttgatgagat tattaaatct agcgatggta taatggttgc aagaggagac
     3241 ttaggtattg aggtacctta ttataaagtt cctaatatcc aaaaagaaat tatacaaaaa
     3301 gcaaacaatg cctctaagcc tgttattact gcgactcaga tgcttttttc attagccaaa
     3361 agcaaaaccg ccacaagagc tgaaatttca gatgttgcaa atgctgtttt agatggaaca
     3421 gatgcagtaa tgctaagtga agaaagcgcc gttggtatag atcctgcaaa cgctgttgat
     3481 ataatgtgcc aaactataat agaaacagaa aaacgctatc catataacaa atttaatgat
     3541 tttaatgatt tagacaatac agataaaatc atgcgttctt cagctcatct tgcaacagat
     3601 cttaacgctg atgctatttt ttctttaaca agtagcggaa aatctgctat taagattgca
     3661 agatatcgtc caaatataga aatcatagca gtagggcatt ctgaaaaaac cttaaactct
     3721 ttaagtatag tttggggagt taatcctgca atcttggtta acaaaagtaa tgaacttaca
     3781 gaattattaa aagactctgt aagatcaagt gttgaaaaag gttttatgga tgaagacaaa
     3841 tgctatcttc taactgcagg ctttccaaca ggagtagaag gtactagcaa tcttatccgc
     3901 attctcaata aagagcaaat tgcttattat ctacaataaa acattaaatt cctttgaaaa
     3961 taaggaattt aatgtcctta taaatttttt aagccaaaag tcgatataaa ttaaagcctc
     4021 acacaaagga gcaaatatgc aagtgaatac tttttcaaat atcgctagca tggcacaaac
     4081 acaagttagc aataagaagg cagatgatgc taaggaaaac acaaaagaca aaaatgttca
     4141 aagtgctaat tctagcaagg atgtagataa aaataccctt gaaaaattaa atgcacttgg
     4201 tggaaaaggc attacacaaa tttacctagt tcagtttcaa cagcaaacaa tgaatgctgt
     4261 aatagattcg agcaatgccc aaactggact agatagtctt ttaaatggtg ccaatttaga
     4321 tactgcgaaa tctatactta caaatattga ttttgcatcc ttaggctaca gtggcaaaaa
     4381 tccacttgat atgaatacag atgaacttca acaacttgta agtgaagatg gtttttttgg
     4441 agtggaaaat acagtcaatc gcatcgcgga ttttgttatt aaaggcggtg gcgatgatgt
     4501 tgaaaaatta aaaaaaggtc ttgaaggtat gaaaaaagga tttgagcaag cagaaaaaat
     4561 gtggggtgga gaacttcctc aaatcagtca agatacaata gatgcggcac ttaaaaaagt
     4621 tagcgatcgc atcgatgaac taggcggaaa aactctagat cttcaagctt aactaaaaat
     4681 gcttagaaat ttctaagcat ttttagttgt tattaatatc aaaagtaaaa aattcactct
     4741 taaaattatt aggtaaagtt ttatactgag atatcgcagc ttcatagttc tttacttctt
     4801 gatacaacat accaagagct gctttactct ctttgttatt tttatctgta agtttagaaa
     4861 gctgcaaaag cgctatagct gaatttggat tatttgcacc tacggctgct acggctgcta
     4921 aaaataaagt tttagtatct ttagctccat aatcatcaat caaagaatta taaagcgcat
     4981 aagcctcctc gtattgctgt gcaaaaatat ccaaataagc taaagtttgt aaaataccct
     5041 catcttttgc tcctgaaaca ttaatcaact ctttaaattt ctgtctttct aaatttaaaa
     5101 gccctgcaat atgcattaaa ttaacataaa attccctagc tatatttggc ccaccaaaaa
     5161 cactacgata atcaagtttt aaatttttaa aatgaatttg agcattttga gcatattctt
     5221 taatatttaa atttgaattt aaagaattaa aatacaaaat atttgccaaa atatcttcag
     5281 gcaactctga acgcaattta gcaattttca catctacttg attattaagg ttattatttt
     5341 tagcaacaat agcttcaaaa atcaaactca aaggcgtatc tttttttgtt tcatctaaat
     5401 aaggaagcat agaaatataa ttattattaa ctaaaaataa catacttttt tgcatattag
     5461 ctttaaaatt agaatcagca gctatattat caagaatttc attgtaaagt ttagttatat
     5521 caatatcaat taattttgca caaaacatag caaaagcacc tgctaagtaa tttttaggat
     5581 taagatgata tgaacttgaa aaatgcttat aagcaagttc ataattttgc atttgggcat
     5641 aagttaaagc caaattataa tgtaaaatac tatgttctgg ataatccttg ataagttttt
     5701 gaaattcttg gttagcaagg cgtaacttct gatttaatgc atagttaata atattggcaa
     5761 tttttacatt ggtagatgaa agagctttgc ttatattaag ataaattccc gcatcagtac
     5821 tatcatctac gaaatctgta acattagctt ttttaatata taaagcagcc tgcttactat
     5881 caaaaacctg ataaggtgca aaataaaaaa gcaaatcgaa ttgatctttt tgttttttta
     5941 acaaatcttt tgaaaaagaa ttttgagcaa ctgctatatt aaaaagatcc ttatttaaac
     6001 gaacttgaat tttataagta tctaaaatct tatatctatc tttatcgtta tcataagaat
     6061 tttgcaagcg cactaacata tcttgataat ttcctgtttt aatatcaacc aatgttaaag
     6121 ccgctaaact ctgattaaaa tctctttcaa ttttcatcgc tgtgcttaaa gcgactttag
     6181 ctttagcata ttctcctatt ctagcgtata aaagacctaa agataaacta gattcaaaat
     6241 tgccttgaga atttaattgc tgtatagcct tggaatcaaa gtccattttt gcataaattt
     6301 tagcagacaa atactttgca acatcagaat acggctccac atctgttctt tgcaacattt
     6361 gtaaggcctc agggtaatat cctttgtaat aattaatcaa gcttaaataa taatcatata
     6421 attttgattt tccttctttt ggaagataca cttgagctaa atcaatataa tatctaaatt
     6481 tttccttatc attaagcttt aaagcacaaa cagcagcatt gatagcagct acactttgat
     6541 tttctccatt ggctatagct ttcttgaagc tttcaaaagc ttcttggaat ttattctcat
     6601 tcatttgaga aacgcctaaa ttataattag ataaagattc gttatatacg gcaacttgct
     6661 cataaacttt taaagcctgt tcaacctcac cctttaaata taaagcattt gctttttgga
     6721 tcataccatc aattctttgc atatcattgt atttatatga ttcatcaggc ataacaacag
     6781 gttgttctaa aggcttagaa gctataatat ctggtttaat ttttccttca ctaaaagtta
     6841 aataaaaaag tgtaaaaact aaaatgcaaa taatccccaa agataaaccc acaagagaca
     6901 taaacttacg atctttatac caaggcgtag gctcttgact ttcaacttct tcaaaagttg
     6961 atacatcttc aggcgcactt tctcttgtaa atttaaaacc actatcacta ttttcttgag
     7021 gtaattcttc tggcaatgat gcaaattctt catcttctgg agcttgcccc tcttgcccct
     7081 taaatccctc taaactctca tcaagtcttg gttgatttaa gccatcttcg ggtttttcta
     7141 gtattatatc ttcttgttca gccatctata ctctttaaaa atattttttc aaagcatcag
     7201 gaatatgaat ttttccttct ttatcttgat aattttccat aatcgctacc aaggttcttc
     7261 ctactgccaa agatgagcca ttaagagtgt gaacgagttc attttttcct tgttcgtttt
     7321 tatagcgaat tttagcgcgt cttgcttgaa aatcacgaca atttgaaacc gagctgatct
     7381 cacgatattt attttgtcct ggaagccaca cttcaagatc tacagttttt gccgcactaa
     7441 aacccaaatc tccggtgcaa agcatcaaat gtctatgcgc taaacctaaa gaactcagca
     7501 aatcacttgc acactcaagc atttcattaa acacgctatc actttgctca ggtttagtga
     7561 tacttacaag ctctactttt tcaaactggt gttgtcttat aatacctctt gtatcacgcc
     7621 ctgcactgcc tgcttctttt ctaaaacaag cactataaca agtcattttt atcggtaaag
     7681 tttcactagc taaaatttct ccgctgtaaa gattggttac tggaatttca gaagttgaga
     7741 tcaaatacaa atcctcatca tctaccttat acatatcttc tttaaatttt ggcaactgac
     7801 ctgtcccaaa catagtagca ccatttacca aaaaaggtac attaacaaat tcaaatccac
     7861 gacttctatt aaaatctatc atataattta ccaaagcacg gcttaataaa gctccttcgt
     7921 tcttaagcac acaaaaacgg ctttgtgaaa tttttacccc acgcacaaaa tcaagccaat
     7981 ttaaactctc tcctaattca aaatgctctt ttggagtaaa atcaaagcta ggtggattta
     8041 aaactttttt aagctccaca ttttcatctt cgtcctcacc cacaggcaca cattcatctg
     8101 ggatatttgg gatggcatga gcgatttctt caagctcatt ttctaaagca tttactttag
     8161 cgctttgctc attaattttg cttttatttt cgcttaattt tgcttttaaa ctttctttat
     8221 cttcggctgt agcaagttct ttactgaatt tattttgaaa agcttgaaat tcttctaaag
     8281 ctgttttttc tttttttaaa cttgcaaaaa gttcagcaag tttttttaag atattttcat
     8341 caactttttt attttttaac tttttagcca cttcatcaaa attattttgc aaatttttta
     8401 aatctagcat tttctactcc ttaaagtccg attttttcat aaattttttg cattttttct
     8461 tgggcgattt ttcttgcttt tgtcgcacca aaatccaaaa tttctttcaa atgcgaaggc
     8521 ttttctaaaa gctcattata tttttctctt gcttctttaa aataagcatt tacaagctcg
     8581 tttaaataca ttttaaaatg tccataaccc tcaccacctt tttcatagcg tatttgtaat
     8641 tctttttgcc ctgattcatc taaaaaaagc tttgcgattt taaaaatatt gcagttttca
     8701 tgatcttttg gatcttctaa agcggtgcta tctgtaacta tggaagaaat ttgttttttt
     8761 aaggtttttt cactgctaaa aatatctata gtattttgat aagatttact catttttgcc
     8821 ccatcagtgc ctacaactac agctacttct tcattaactt tagcctttgg aagggtaaaa
     8881 atttcacccc attcattatt aacttttaaa gcaatatcac gtgcgatttc aacatgttgg
     8941 atttgatctt ttcccacagg aacaatttgt gtatcaaaaa gtaaaatatc agctgccatt
     9001 aaaacaggat aagaaaaaag cccatgtgaa gcactaagcc ccttagcaac tttatccttg
     9061 taactatgcg cacgctctaa taaacccata ggagtaaatt gcgataaaat ccaataaagc
     9121 tccataactt ccttaacatc actttgcaac caaaaaacgc ttttttgagg atctatacca
     9181 aggcttaaaa aagccgcagc agcttttaag gaattttgtt taagtttttc tccatcttga
     9241 gaagaagtca tggcatgata attagcaata aacataaaca tttggctttt ttcttgtgca
     9301 tctaccattt gcttaatcgc accaaaataa ttacctatat gcaaatcgcc acttggctga
     9361 aggcctgtta atactctcat tttatcacct ttttaatctc gcttaaaagc tcatctatat
     9421 ttttattttc tatatttaaa ataaaatttg ccttttgttc atacttgctt aaacgctcat
     9481 tatataattt ttttgcttta atttcatcat aaaataaagg tcttttagaa atttcatctt
     9541 tgtctaaacg cttttttaaa tattcaaaat ctgcttttaa ataaatacaa aaacctgctt
     9601 tttctaaatt tgaaacatta acaaaacccc cgcctgtagc aatacaagct ttctcacaag
     9661 aactaaaaaa atcagccatt ttttgctctt gttctctaaa aaaattttcc cctttttgtt
     9721 caaaaatttc actgactttt tgattaaatt tttgttctat taaaaaatca ctatctaaaa
     9781 aaacaagatc taaatcctta gctaaagctc ttgctaaagt gctttttcca gaacccataa
     9841 atcctataaa aacgatattt ttagctttca tcattttctt tactgccctt tttacgcgaa
     9901 gcaatcacta aaggcacacc ttcaaaatta aattcttttc tgatttgatt ttgtaaataa
     9961 cgcttatagc taaaatgcaa ggccttagga cgattcataa taagtgcaat ttttggcggt
    10021 gctaagtcat attgtactgc ataataaatt ttaaccaatt tcccataatc atgcggcaaa
    10081 ggatgtgctc ttgtggcatt ttctatcaag gtattaagct tagaagtttg gattttttga
    10141 gtgaaatttt caaaaatttg caaaatttta tcgagtaaaa catgcaccct ttttccactt
    10201 aaagctgata cgctaatcac gggtgcgtaa gctagaaatt taaaacgatc aagacgcaat
    10261 tcttttacag tcttatcaaa atccatctca cttttatccc atttatttaa aacaataatc
    10321 acacctaaat aatgcttagc cacaagccca gcaatgcgtt catcaagctc gttaaagccc
    10381 tcatgcgcat ctaaaaccaa aagtgctatt tgagaatgag ataaaatttt ttccgtgcga
    10441 tttagggcaa agcgttcgag tccttgaatt ttaccccttt ttctaatacc tgcagtatca
    10501 acaaattcta tcactttatc tttatgaact acactttcat taacaggatc tatagtagtt
    10561 cctgcaatag aacttacaac actgcgttct tgtttaacca aagcatttaa aagacttgat
    10621 tttccaacat ttacacgccc tacaataccc actctgatat gattttgatc gacttcttta
    10681 aattgaaatt cttttccttc ttcataatgc tctaaaaaat cttctaaatt ttcttcttca
    10741 tcggggatta aaaactcttc atgtaaaaat ttttcaagcc attcataaag ttcatctaag
    10801 cctacattat gggttactga aagattaaag atttccttta cgccaaaatt tgcaaactcc
    10861 caagcccttt cttcatcttt tttattatct actttattaa tcactaaggc tataggtttt
    10921 ccaagttttt ttaaagaata aaaaaactgt ctatcctcat catcaggcgc taatttccca
    10981 tcaactagat aaagtatgat atcgctttct ttagctactt ttaaagtgtt ttttttcaca
    11041 tttttaaaaa gttcatcact ttcatcaagc cccccactat caataagcat ggcttttttt
    11101 gaatgaatat gaatttgcgt tttatttgta tctctagttg tgcctgaaat atcacttgta
    11161 atagctattc tttgtcttgc cattctatta aaaaggcttg attttcccac atttggctta
    11221 cctataagta taatgctttg catttttttc ctagaaaatt atatttttaa aattatataa
    11281 aatttggctt aatattaagc aaaaaaagac tagaattaac ccagatttta gtcaaggaaa
    11341 aaaaatgcta aaagtaatca agcataattt aggaatttat ttcatgattt tagcatgttt
    11401 ggattttgca cttatgggag cttgtgcaaa aattcttagc aaggaaatga gttctataga
    11461 aattatgttt tttagaaata tcataggaat ttttttcata gcctatcttt taaaacgatc
    11521 taaggcacat aaagaagggg gatatttttg gctcttggta tttcgtggag tagtaggcac
    11581 gctttcacta tatatgtttt tctataatgt ttcaaatatt acactaggtg gagcttttgc
    11641 ttttcaaaaa actgctccta tttttattac tttaatagct tttgttgttt ttaaagaaaa
    11701 tattggcatc aaaggctgga taggaatttt aatagcattt gatggagtgc ttttaatcgc
    11761 tcagccttgg gctcataatt taaatcattc aggctttgat ttaaaaaatt cagttatagg
    11821 tatcacgagt ggatttttag ccgctttagc tcttacaagt gtaagagaac ttagaaaatc
    11881 ttacactaca gaacaaattg ccttttcttt tatcctttta ggaaccttaa tgcctttaat
    11941 ttctatgatc agtgctgaat tttttgaacc acagcatctt gattctttac atttagattt
    12001 cattctagca ccttttgtga tgccaagtct tacagcttgg cttatcattg ccattatggg
    12061 aactttaggc accatttatc aaattcatgt cactaaagct tatggtatcg ctaaacaagc
    12121 aggagtggtt gccggagtta gttatcttga tgtagtattt agtatgatag ttgggataat
    12181 tttgggagat aatttaccaa gtactatggt ttttttaggt ataataggca ttatttttgg
    12241 tggattaatt ttagttaaga acaaaggaaa aaaatgaaaa aaatgatact cattgctggt
    12301 ccttgcgtga tagaaagcaa agatttgatt tttaaagttg ctgaacagtt aaaaaatttt
    12361 aatgaaaatc caaatataga attttatttc aaatcaagtt ttgataaggc caatcgcaca
    12421 agtattaatt cttttagagg tcctggtctt gaagaaggat taaaaatttt acaaagcgta
    12481 aaagatgaat ttggtatgaa aatcttaacc gatatacacg aaagcaatca agcaaaccct
    12541 gtaagtgaag tagctgatgt cttgcaaatt cctgcttttt tatgtcgtca aactgattta
    12601 cttgtagccg cagcaaaaac taaggcaaaa gttaatatca aaaaaggaca atttttaaac
    12661 ccaagcgata tcaaatacag cgttaaaaaa gttctacaaa cccgtggcat agaagatgaa
    12721 ggctatgaag ctgctcaaaa aaatggtgtt tttgtagctg aaagaggagc tagctttggc
    12781 tatggaaatc tagtagtaga tatgcgttct ttagttatca tgtgtgaatt tgctccagtt
    12841 atttttgatg ctacccatag tgtacaaatg ccaggggctg caggtggaag tagcggaggg
    12901 aaaagcgaat ttgtagaacc tttagcaaga gcggcagcag ccgtaggcat agatggcttt
    12961 ttctttgaaa cacatattaa tccttgcgag gctttatgcg atggatctaa tatgcttaat
    13021 cttacacgcc ttaaaaattg cgttaataca ttactagaaa tacaaaatat cataaaggaa
    13081 aacaaatgaa tattattgaa ggaaaattaa atttagactc aaatacaaaa attgctatca
    13141 ttaatgcaag atttaatcat atcatcacag atcgccttgt agaaggagca aaagatgctt
    13201 ttttaagaca cggaggcaaa gaggaaaatc taagccttat acttgttcct ggtgcttttg
    13261 aacttccgta tgcgttaaaa aaagctatag aaagcaaaaa atttgatgca atttgttgcg
    13321 taggtgcagt aattcgtggc tcaactccgc attttgacta tgtttcagca gaaaccacca
    13381 aaggcatagc caatgtgagt ttaaatcata atatccctgt aagctttggt gttttaacta
    13441 cagatacaat agaacaagcc atagaaagag ctggaagcaa agcaggcaat aaaggctttg
    13501 aagctatgac aactgtaatc gagatgttaa atttaagcaa ggagctttaa tggcaacgcg
    13561 tcatcaagtt cgccaaagcg tcatctcctt gctttatgct tttgagttaa attctcaaaa
    13621 caacgttttt gtagatgaaa ttttagatga aaaaaaaata cgcaatgaac aaaaaaattt
    13681 tactttaaat ttatataatg gaattttaga taatttaaac aatattgatg aaaccttaaa
    13741 ttcatttcta aatgataatc aaattacagc tttaggacat gtagaaagag ctatactaag
    13801 acttggagct tatgagttac tttttaccga tactcctagc gccattgtca tcaatgaggc
    13861 tatagaactt gctaaagaac ttgctaatga caattctcca aaatttataa atggagtttt
    13921 agatgcctta ataaaggcta aaaaatgaag ctttgtgtcg cacttgatct ttctacaaaa
    13981 gaagaatgct tacaacttgc caaagaatta aaaaatttag acatatggtt aaaagtaggt
    14041 ttaagagcat atttaagaga tggttttaaa ttcatagaag aacttaaaaa agttgatgat
    14101 tttaaaatat ttcttgatct taaaattcat gatattccca acactatggc agatgcttgc
    14161 gaagaagtat caaaacttgg tgttgatatg atcaatatcc acgcaagtgc tggaaaaata
    14221 gccatacaag aagttatgac acggcttagc aaattttcaa aaagaccttt agttttagca
    14281 gtttctgctc ttacgagttt tgatgaagaa aatttcttta gtatttatag acaaaaaatt
    14341 gaagaagctg taattaattt ttcaaaaata tcctatgaaa atggacttga tggtatggta
    14401 tgctctgttt ttgaaagcaa aaaaattaaa gagcacacaa gttcaaattt cttaaccctt
    14461 actcctggaa ttcgtccttt tggagaaaca agtgatgatc aaaaacgtgt tgctaatctt
    14521 gcaatggcta gagaaaattt gagtgattat atcgttgtgg gaaggcctat atataaaaat
    14581 gaaaatccta gggctgtatg tgaaaaaatt ttaaacaaaa tacacagaaa aaatataagc
    14641 gaaaacgata tagagcaaaa ttatgaagta attcagcaaa aagaatggga tatgtgtaat
    14701 cactttgaag aatggattaa aactcagcct gataaagaac atgctttaaa agaattttat
    14761 gctaagtgtg ggataaaata ttgaattatc aacaattaga atgcgattac tttaatcttt
    14821 acaatcagtt tcttagcgtg gattttcaaa tttcattatt tgaaaaagat cataaaggtt
    14881 taattaaaga ttttatattt ttttattatc aaattttaaa acaaaaagac ttgagctact
    14941 tgcttgaggt aagaaataaa atttccctga aagtttataa ttatatgcaa gagcactcca
    15001 cttctccaaa agatttaagt cttatttgtc taagagaaaa taaacatatt aaattttttc
    15061 aaatatttta caaggctctc gcttattttg tagcctttag aaaaaaactt gatggagaac
    15121 aaaaaattaa aaatttgatt tcaaatatca atgactgttt tggctatcat ttcttgaatt
    15181 ctgactttaa caatcttcaa aattttcaaa aaagcgattt gttcacctta cctgaaaaac
    15241 atcttaaata ttttcacttc gccatgattc atctttgttt catggtttta aatcctttaa
    15301 attttaaaga ctctaatcgg catcttgata aagcgattaa ttatcttgtc gatggaactt
    15361 ttgaaattta tgagctcatc tttaaagaat attttttatt gttttcaaaa gataaagagc
    15421 tcaaggatga atttagaaaa ttaaaaaaat tagaatttaa aattctaatg caagaaactt
    15481 caaaaattaa actacttaat cactataaag aattttgcga agaaatattc tacaatatag
    15541 aacttgaaaa aatcacacaa aattaatcct gtattaacat tgttatagtt taataataaa
    15601 aatttttaat aaggaaaaat tatgcttata acacctgaaa aactttataa acaaaggaga
    15661 aattttttaa aacttggagc gggtgcttta ataagttcaa gcgtgcttgc ttctaaacta
    15721 tctgctttaa atttcacaag cgatactaat ccaaacaaac ttgaaatcag cgatgaagaa
    15781 ctggctacaa attatgtcaa tttttatgaa ttttcaacag ataaaagaaa ggctgtatca
    15841 ttggcacaaa atttcaatac tcaaaattgg aaaatcgata tcagtggaga aatagaaaaa
    15901 cctttaactt taagcatgga agatatttta aaatttccac tagaagaaag aatttatcgt
    15961 tttcgctgtg ttgaaacttg gtctatggtg gtaccttggg taggctttga attgcgtcgt
    16021 ttgattgaaa tggcaaaacc tacaagcgag gcaaaatttg ttaaatttac cactctttta
    16081 gataagagcc aatttcccga tcaagacgct ttatttccaa ctatagacta tccttatgta
    16141 gaaggacttc gcatggatga agctatgcat cctcttacct tgcttgcagt aggaatgtat
    16201 aaaaaagcct taaagcctca aaatggcgct ccaatacgcc ttgttgttcc ttggaaatat
    16261 ggctttaaaa gtattaaatc catagttaaa atagaattta ccaaagaaca gcctaaatcc
    16321 acttgggaaa gttacgctcc aagtgaatat ggtttttatg ctaatgtcaa tcctaatgtt
    16381 tctcatccta gatggtctca agctaacgag agggctttag gagacttctt taccaaacct
    16441 actttaatgt ttaatggata tgaaaaagaa gtggcaagtt tatataaaaa catggacttg
    16501 aaagtgaatt tttaatgcag acaaaatact ttaaatttct tgcttatttt agctttatca
    16561 taagtttaat ctatggcttt tatcatatca taaaagcctt tgattttgta aaagaagcct
    16621 atatttacac tggaatattt gctttaatct ttttaaattt aagtctttta ttttctttac
    16681 ttaaatttaa aaaaacaaaa aattatccta aaattttagg tatttttgca gctttttggg
    16741 cgattttgca ctttttaaat tattttattt ttgatagaaa tgctcaaatt ttaaggcttt
    16801 tcaatgatat ttcacatcgt ttattagaag caagtggatt tatcgcattt ttaatcatat
    16861 ttttaatgct tttaagttct tttaaaatct ttaaaaaact tattaaaatc agaaaactag
    16921 gatatttatg cttagttttg gcaagttatc attatttttt aaccccaaaa attcctatgt
    16981 tttgggaatg gagtgcttta attatagctt tgttttattt tatagttcgc tatacaaaaa
    17041 cattaaaaaa gttaaaatcc aacaatctta cttttatcaa aacttgaatt taattctttt
    17101 tgtatgcttt ctataaaatc ttgcatttta aaaaccccat cttttgatac agctactttc
    17161 aaagctgtat tcttcaccac cattaaaatt tgtgctccac ttaattcata atttgataaa
    17221 atatttatat caaaatcttt ttcaaataat gcttttttag gtagaaattt ttcccaaatt
    17281 ttaagcctat ctttaaaatc aggtttttta aattctatct tataatcaaa tcttcttgaa
    17341 aatgcactat ctaagctttc taaaaaattt gtcgtagcga taatcacacc actaaaacgc
    17401 tcaatttgct ctaagaatat attttgcatt tgattatgca ttttatcgct accactactt
    17461 ccatctacac gcgtacttaa aaactgatca gcttcattga gaagtaaaat aggactttgt
    17521 ttacaagttt gcacgatatt tttataagta tcaaaaattt ttcttacatt ttgctcactc
    17581 tctccaaccc atttgctcaa aattttagaa cagtcaaaac taagaacaga ttttttcatt
    17641 gatttagcca tagctaaagc tgacatagtt tttccagtac cagcaggacc ataaaaaata
    17701 attttagctt ctatattttt attactcttt ataccccaag aatgaagtct ttctaggact
    17761 tttttatctt gttgttttaa aatattttct aaaagctctt ttgtattttc aggcataata
    17821 atatcattga tgtcagtgct tggttctata agctcgaaaa tatcttgatc ttttaaaaca
    17881 ctttcaattt tgattttttt actttgtttt ggttcaaaat ttataattct ttgtaaaatt
    17941 tcatcgataa taaaaaaact tttagaaata tctccaaaag catttaaata ttcatcatac
    18001 tcgattaagt ttaaaagagg agcattttct tgtaatagtt ttttattttt atgcctttct
    18061 aaatcatttt cactgattaa agaaagtaaa gaattcattt ctctagaaat cgaactttca
    18121 ttacttaagg cgtattcttc ttttaaaagt gctagaaaaa taatttgttc tttatgttca
    18181 agattgtatt ctttaaaaat atcagccaat acattataaa atttactttt ttttagtctt
    18241 tctttgatat gtttttcata aagtt
//
LOCUS       DARGEX010000023        17996 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.023, whole genome shotgun sequence.
ACCESSION   DARGEX010000023 DARGEX010000000
VERSION     DARGEX010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.023"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..975)
                     /locus_tag="SF010_000638"
     CDS             complement(<1..975)
                     /locus_tag="SF010_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8229590.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILN"
     gene            complement(941..2338)
                     /locus_tag="SF010_000639"
     CDS             complement(941..2338)
                     /locus_tag="SF010_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229591.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            complement(2322..2834)
                     /locus_tag="SF010_000640"
     CDS             complement(2322..2834)
                     /locus_tag="SF010_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8229592.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            complement(2831..5260)
                     /locus_tag="SF010_000641"
     CDS             complement(2831..5260)
                     /locus_tag="SF010_000641"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG8229593.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            complement(5270..6241)
                     /gene="secF"
                     /locus_tag="SF010_000642"
     CDS             complement(5270..6241)
                     /gene="secF"
                     /locus_tag="SF010_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG8229594.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVIIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            complement(6241..7821)
                     /gene="secD"
                     /locus_tag="SF010_000643"
     CDS             complement(6241..7821)
                     /gene="secD"
                     /locus_tag="SF010_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG8229595.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASAFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            complement(7814..8086)
                     /gene="yajC"
                     /locus_tag="SF010_000644"
     CDS             complement(7814..8086)
                     /gene="yajC"
                     /locus_tag="SF010_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG8229596.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            8059..9357
                     /locus_tag="SF010_000645"
     CDS             8059..9357
                     /locus_tag="SF010_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG8229597.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKEMIKK"
     gene            complement(9594..10790)
                     /locus_tag="SF010_000646"
     CDS             complement(9594..10790)
                     /locus_tag="SF010_000646"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG8229598.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            10930..12153
                     /gene="sstT"
                     /locus_tag="SF010_000647"
     CDS             10930..12153
                     /gene="sstT"
                     /locus_tag="SF010_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG8229599.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYSISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            12163..13050
                     /locus_tag="SF010_000648"
     CDS             12163..13050
                     /locus_tag="SF010_000648"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG8229600.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVLRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            13054..14775
                     /locus_tag="SF010_000649"
     CDS             13054..14775
                     /locus_tag="SF010_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG8229601.1"
                     /translation="MLEWDLSALFHDKESLQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYNIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQRMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            14769..15206
                     /locus_tag="SF010_000650"
     CDS             14769..15206
                     /locus_tag="SF010_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229602.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            15203..17278
                     /locus_tag="SF010_000651"
     CDS             15203..17278
                     /locus_tag="SF010_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8229603.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEDKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLNGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            17275..>17996
                     /gene="truB"
                     /locus_tag="SF010_000652"
     CDS             17275..>17996
                     /gene="truB"
                     /locus_tag="SF010_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG8229604.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLTNLKQII
                     NQMQGIISYTPPQFSAKRINGTRAYELAKKGIEVNLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKDLNKLENGAKIFVKELDFHD"
BASE COUNT         6314 a         3009 c         2377 g         6296 t
ORIGIN      
        1 atttaaaatt tgaaaaatat ccttatccaa ataagcatta taaataagat ttattttttc
       61 tccttgaaat ttatcaagca tggccttagc agccatggga ttatgaccca catcaacaaa
      121 aaaatttgga gaaatttctt ggcatcttcc ttgtaaattt aactcttgta acttttttaa
      181 agcttctaag gttttttctt gcgaagttaa aatttcacaa gcctttaatg caagctttaa
      241 attatgcttt aaaaaataag gtaaaacaaa ctttttacaa taaatctcaa atttttcttt
      301 caaaaaagga tttaaggagg aaacttgcaa attagctttt tttaaaaaag caattttttt
      361 tgctaaattt aaaacatttt gctcttgctc atcacttata agtgctatag gtgccataac
      421 tttaagcttg gttcttgcaa tatcttctaa agaattgccc aaaatttgaa tatggtcaaa
      481 tccaattctt gtaaaaatac tcattcttct ttcaaaaata gaagtagcat catattctcc
      541 acccactcct gcttctaaaa caatgaaatc gcatttttga aataaaatca tagctaaaaa
      601 agtagcatat tcgaaataac ttaatttttg caagtcttgt ttaaaaattt cttcaagtct
      661 tatatgagct tgttctaatt cttcatcatt cgcaatctta ccatcaagat aaaatctttc
      721 attaaaactg aaaatgtgcg ggctagtata atgccctatt ttataattta aattttctaa
      781 aagttgggtt aaatatctac ccgtgctacc tttaccattt gtgcctataa gttggattat
      841 aggaatattt ttaaaatatt tcttatattt ttcatacatt ctaaacatca aaaaacgatc
      901 aattttatcg taatttatac ttttttgagc taaaaaattc tcaactttca ttatgttgtt
      961 cattaaccgc tgcaatttgc tttattaact catctaaaat attaatactt ggcttacttt
     1021 gcttatcaag ataagccacg tgaattttag gagttataat atcttgctta taaataaatc
     1081 taaaattttc tatagtttta agatttgtat ttacaagctg tgtaatttca tctttgcttt
     1141 ttcctggcga aacaatcaaa taactctttt catctatcat ccacagttca tcaaattcac
     1201 tacaagaatc ttttaaaatt tttttaaatc gaacaaaaat ttcattcaaa cttcccatac
     1261 catatttttc cataatgaaa cggtaattta ctatagaaaa taaagctaaa gaataattaa
     1321 ctttatactt attaaaattt tcatccattt tatcaagctc tttaagaaca ctccaagcct
     1381 ctctctcttc taagctttgc gtgaattcaa tttgattatt taaagatgta attttttctc
     1441 caagttgttt aaattttagt tttaaatcct caaaactaag ttttacttcc ccattttcat
     1501 ctggttttaa ggtattgata aaatccatat ttttttcatt cgatttatta agtaagacaa
     1561 gcaattcata gatttttttt agattatcgt taaaaaaatt taaatttttt tggacataca
     1621 tattatcaac cattatgcga tgatttataa attccattag ttcattttta aaattttctt
     1681 cgcctattac aaaaggcttt tgtgttaaat tttgtataaa accttgaatt tttaaatctt
     1741 ctaccaatga aggatttaaa cccaagcata ataattcact aaagtgctca taactacgct
     1801 cttcaagctt gactaagagt tttttaatca cgctatcata atcatcatat ttactaatgc
     1861 catatttacg agcttgttct tctaagtcat tttcatcata atttctttca agctctttcc
     1921 attttttagt aagcaagtaa atactttcac tatccatagt tttagaaatt ctaatcgaag
     1981 tcaccttagc caaatctctt atctttttat ccttacttat ttgcaaagtt ttagatatgg
     2041 tatataaaaa atcaaaaaat tcactaaatt gttttccgct ttgtctattt aaaacagaaa
     2101 ttaaaaaact aattagttct tctaaacttc ttatagtttt agaatttaat tcttgttgat
     2161 aaatcggcaa aagcaaggtt ttgtatttgt caagtttagc tttatttgag cttgtgatac
     2221 catattttaa agataattct tcaaaaattt ccgtataatt ttcaggagtt ggttttagtt
     2281 ttctttcttt taatgcaatt aaagtttgct ttgctatttc attagtattt ggaatcacgt
     2341 ttttgccctt taatagcaat tacggaaata aactcatcaa atgcctcgct tgaagctgct
     2401 cgaatagcct cataccttgc agaatcacta ataatactat ttggagaaat ttcaaaatta
     2461 taacttccac ttgtactaaa agcctgactt gaaccatctt taaagacaac attaaaatct
     2521 aaatttaatt tagctttata actaataaca tagccatttt tatcataagc taaaggaata
     2581 aattctaaat tattcatttt aacattaatt acatcatctg cctcgtgttt taaagcaagt
     2641 ttacgcccta attttgaaat taccatttct tttaaagtat cggcaacata gatactattt
     2701 tttgggtctt gttgacttaa ttcaacatta acataaacct tctcatcgaa aatattatta
     2761 gcgatttttg atgtaggaat atatccacaa gcacctaaaa ataaacctat acaaaaaatt
     2821 aaaatctttt tcatttaatc actagattaa ctagctttcc ttccacataa atttctttaa
     2881 ctatactctt accttcaagc catttagcag tattttcttt tgcaaaagct aaaatttctt
     2941 ctttgctcgc actacttgaa atttcaaatt cagccctttt tttaccatta atacttacag
     3001 ctaaatttaa agtatctttt acaaaaacct cttctttaag ttctaatttt ttgaaatttt
     3061 tacatttaaa aagctcctcg ctaagctcaa aacaaacatg aggaataata ggctctaaaa
     3121 tatttaaaat aatataaaaa gcctcttgct ccaaagcttc atttttacaa agtgctaaag
     3181 catttaaagc ttccatacaa gctgcaatta aagtattaaa agcaaaactt tgatgataaa
     3241 cttcaaaaga ttttttcaaa gcttcatata cctttaatct tgcatatttt tcttctttgt
     3301 ttaaattttc ttgttttaat tctacaagct cacctttttt aacattttgc gccctatcat
     3361 agagtttgca aataaatcta taagcccctt caaccgcatc atcattccat tcaagctctt
     3421 tagccggagg cgcagcaaaa agtataaaaa gtcttgcggt atcagcaccg tatttttcta
     3481 taatctcatc aggatctaca acattgcctt ttgattttga cattttagca ccatctttta
     3541 acaccatacc ctgagttaaa agtctatcaa aaggttcatt ttgtgttaaa taacccaaat
     3601 ctcttaaagc tttttggaaa aatctcgcat aaagtaaatg caagattgca tgttcaatac
     3661 cacctatata ttgatccaca ctcatccaat actttacact tttttcatct aaagcttttt
     3721 cctgccaagt tttctcatca cttgcaaaac gtgcaaaata ccaagaactt tcaaaaaaag
     3781 tatctaaagt atcgctttct ttttgagcct ctttaccaca ttttggacag atacaatttt
     3841 tccaagttgg atgtttatca agtggattac cctcacctgt aatttgcaca tcttcgggca
     3901 gagtaatagg taaattttct agtttttgag gtactatacc acaactttga catttaatca
     3961 taggaatagg cgcaccccaa tatctttgac gcgaaacacc ccaatcacga attttaaaat
     4021 ttacaaccct ttttcctata tttttagctt caaactgaga aatgattttt aatcttgctt
     4081 cattacaatc aagattatca aattcttgac tattaattaa ttttcctaat ttttgcatat
     4141 aaggtaaatt ttcttgagtt tgaataactt gtttgatggc aagattatat tttgttgcaa
     4201 attcaaaatc tctttcatca tgagctggaa cagccataac cgctccacta ccataatcag
     4261 ccaagacaaa attagccacc cataaaggaa ttttttctcc gcttaaagga tgaatggcat
     4321 aaattcctaa aaaataacct tctttttcag aactttgtct ttctcttggg ctttgatttt
     4381 gaataacttt gattttattt aatacatctt gatttaataa attttgtgaa agcaaatttt
     4441 gaacaatctt atgttctgga gctaaagcga tatacgaaac tccataaatt gtatctgctc
     4501 ttgtagtaaa aacttctaaa gaactttctt tggttttttg cttactttct tcgtctaaat
     4561 ttaaagaaaa ttccaaacct tcgcttttac caatccaatt ttcttgcata gttaaaactt
     4621 gattaggcca tttatctttt aattcttcta aatcttttaa aagttcctca gcataagcag
     4681 tgatttttac ataataacct ggcatttttt tctgcaccac ttcatgacca caacgccaac
     4741 attttccgtc ttcaacttgc tcattagcca aaaccgtttg atcttgttca caccaattta
     4801 catttgcttc tttagtgtaa atcaaacctt tttcaaacat cttaataaaa aattcttgct
     4861 caaattttgt ataaagtgga tctgaagtag caagcattct ttttttagaa aaagaaaaac
     4921 ctaaagaaaa aagttctttt ttcatataag ctatattttc ataagtccat gacttaggat
     4981 gaattttatg tttaatagct gcattttcag caggcatgcc aaaactatca aaacctatag
     5041 gatgtaaaac attaaaacct atcttgcgat aatatcttgc taaagcatca cctatagtat
     5101 aatttcttac atgccccatg tgaatgcgtc cgctaggata aggaaacatc gataaaatat
     5161 attttttagg caaatttaag tcatcttttg gctcaaaata ttcattttca tcccaaattt
     5221 tttgccattt tttttctatt aaacttgctt cataagccat aaattctcct tacacagttc
     5281 ctttttcata cattgcacga ttgcgttctt tatcttgttt tctttttgct ttttcaattt
     5341 ctttatttct aaactcaagc acactaaatt taaaccataa taatgtcgga cttgcaacaa
     5401 aaatagagct taaagttccc gctataatac ctacaattaa agccaaagaa aatccttgta
     5461 tcatttcccc gccaaagaaa taaagtatca caacagttgc taaagttaac cctgaagtta
     5521 aaaccgttct tgacaaagtt gctgaaacac tttcattgat aataggtgca agttcggttt
     5581 ttttacttgt tttaatacct tctctgattc tatcaaaaat aataattgta tcattcaaag
     5641 agtacccaag cacagttaaa acagcagcca aagtatctag attgacatca attttaaata
     5701 aagaaattgc ccctaaagta atcacaacat catgaatttc actgattata gccgcaagag
     5761 caaaacgcca ctcaaaacgc aacgctatat aaattaaaat tgctatcaaa gatacagcta
     5821 tagccataag tcctttattt ctaagttcat cacctacttt tggacctacc acatcagcac
     5881 gacgcacttc aaattttccc gtatccttta aaagagtgct tatatgctca cctatatcat
     5941 tgcttacatt atcattactt cctaaaaagc gtatgattac ttcttcattg cttccaaatt
     6001 cagttacaga taaattttga aaagttcctt gattttctaa aatttctcga atttgtgtta
     6061 taggagctgc attttcatat ttaagctgaa ctaaagttcc tccgctaaaa tcaatgccat
     6121 attgcaaacc cctatcccaa agcaaataaa tagaaccaaa aaacaaaata aaagaaagag
     6181 aaatagcagc aaaacgcatt ctcataaaat cataaatttt cttttcgcta aaaaactgca
     6241 ttatcttctc ctgtaaccaa accaaaatct tgtattatta cttttttcta tgcgttgcat
     6301 aaaataatca aacattccgt gagttcctaa aatagctgta atcatagaaa caacaatacc
     6361 aattcccaaa gtcacagcaa aacctttaac tgctcctgtt ccataggcat aaagcgctac
     6421 cgaagtaact aaagaagtga tatttgaatc tataatcgca ctcatagcat ttttataacc
     6481 ttgttctata ctagctctta tatttactcc atctcgcaag agttctcgta tgcgctcatt
     6541 gataatcaca tttgcatcta ctgccatacc cacagttaaa acaagtcctg ccatccctgg
     6601 taaagttaaa gttgctccaa acatagccat aacagccact actaccaaaa cattaactaa
     6661 cattgcaata tttgcaaaaa ttcctgccac accgtaatac atcatcataa atattacaat
     6721 aaaagccgat gcaccaatta aggctatcat actcatttta atactatcag cacctaaaga
     6781 tggtcctatg cttctttgtt caagtaattt tacaggcgca agcaaagctc cacttcttaa
     6841 agctaccgcc acatcgcgtg cttcttcttg agtaaaagct ccactgattt gcccactacc
     6901 tccgcctatg cgttcattga tagatggagc agaatatact ttattatcaa gtacaatagc
     6961 aagacgcttt ccaacatttg ctcctgtata atcagcaaat tttttagaac cctcagcatt
     7021 taaagtaaaa ttaatcacag gataattact cttatcgcta agtcctactc tagcatcagt
     7081 aagcatagat ccatctaaaa taggtatact ttttaaggta tattttaaat ttggatttct
     7141 agaatcaggc actaaaatca gtccataact cgcagcctca gcatcgctca ttgtagaagc
     7201 ttgacccatt ttagaatcat caacttccat aagttgcaaa tgcgctgctt ttgtgatgcg
     7261 ttcttttgct cttagttcat cttctttggt tttaatccct gcaagttcaa ccaaaatctt
     7321 atcatcacct tgtttagcaa ctgttggctc tgctaaacca aattgatcaa gcctatttct
     7381 tatggtttca actgcttgca aaagtgcaaa attttctata ttttttactt cttctgaggt
     7441 aaaagaaatt ttatagtgca tattttcact ttgtatatta attcctttta tttctttaag
     7501 caaattttca acttttgcaa tatctgcatt atcaagcaaa gtaaattcta aaatatcatc
     7561 atgggtattt aagccatcat ttaaaatatt ttctttatta aaagaataac tcaatgaaga
     7621 tgcaattgat tttattttag attttacagc ttcttcatta tctacaccta agagcatata
     7681 aagcccacct tgcaaatcaa gccctaaatt aatcttcgca ccacgttctg actgcaaaaa
     7741 agaagggagt gaaaaagcca ctccaaaaat aaataccgct ataaaaataa tcaagcgata
     7801 attgatttta gaattacgca tcaattttct ttgctataaa ttctcttgaa atttttgcag
     7861 taacattgtc ttcattaagc ttaactttga taaaatcctc ctctggtttt acgacttcac
     7921 aaataagtcc gccattagtg atgattttat ctcctttttg caaagactca agcatttgtt
     7981 tatgtgcttt tgcttgtttt tgttgcggtc tgatcaccaa gaaataaaaa attgcaaata
     8041 acactacaag aggtaacaat gaagttaaaa ttgaattttc tgccatattt ttcctttatt
     8101 ccaaaaaaat taaacactaa ttctatcatt tttaaaataa taaaagtctt ttttattgca
     8161 attttacttt caaattctat ttatctatca ttttttgaaa atatttttac acaaaccatt
     8221 agtccatttt tagctatttg ggggttagtt ttacttctaa aaagtaaaac ttctaaacaa
     8281 tatttttgga taggtttttt tgtagggatt ctttggtttt ggtggattgg tttatcttca
     8341 atttatttta atctaaacta tttagtacca attataccaa ttatcattgg ttttatttat
     8401 gggttacttt ttagattatg ttatttatta aaatttgatt ttttaaggct ttgtggaatt
     8461 ttttgcataa gttttatcca tcctttagga tttgattggt ttaattgggg gatttttaca
     8521 gtttatggtt tttttgaccc aagttatcgt ggcattattt gcatattttt aatagcatat
     8581 ttcatctatg agggttatat atcaagatat tataaaatag caattgttct tattttattc
     8641 tttagtggat ttcaatataa tgaaaaacaa gctcaaactc ttaatttaaa ctacaaactc
     8701 atcaatacta atatctctca agatcaaaaa tttttacaag aaaatttaaa atcaaattct
     8761 gatatcttaa ttcaagatat acttcaagct ataaatgaaa aaaaagaact tgtaatcttg
     8821 cctgaaaccg cttttgcttt tgatttaaaa aataccaaat atgagcttat gcttaaagaa
     8881 ttatcttata aaatcaccat tattacagga gcatttcatg ttgaaaaaga gcatacttac
     8941 aatagtactt atatctttaa aaaaggcaat gtctatattt taaataagca ttttttagtt
     9001 ccctttggtg aagaaattcc attttttaaa gacttaacaa aaaaatattt tctcaaaaat
     9061 attgaagaat tttccaaagg tcctatacaa agcaaatata aattagataa tcaaattatc
     9121 acaaatgcaa tttgttatga agctaccaaa gaacaaaact atcaaaattc acaaattatt
     9181 atagccctaa gcaacaatgc ttggtttaat aatagtagcg aatacaaact ccagcaactc
     9241 ttaatgaaat tttatgcaag taaatatggg gttagtgttt atcatgctac aaatggcaaa
     9301 gagaatatag ttatactccc taaaaagctt ttaagcaaag aaatgataaa aaaataatat
     9361 taaaatttta attttaaagt aatttaagtt attttatatt ataattctgt caaacaatat
     9421 tttgacttag aggggttttt accccaaagc taaattaatt tagcttcctt cctaactttt
     9481 atatttatga gggatattga aaaatatccc tctaagtcaa aaattaatat aactttatta
     9541 attctttata attatacaag ccttgtttaa gcttgtataa tattgttaat tttttaaagt
     9601 agctttttaa actgttctag agcatcaagt ttttcccaag gatagtcctt ttgtcctact
     9661 tgcccacgag ctgctacatc cgcataaaga aaagtttctt tacttggttt atccagatga
     9721 aatttatcac ggatccaatt tggcgttaaa gagaaatttt gcattacaaa atcacttaaa
     9781 acatcgtcat ttacactggt atttgtgccc atacaatcca cgcttaccga agtaggtttt
     9841 gcaacaccta tagcataact aagttgaact atacattttt tagcaagccc tgctgcaact
     9901 atgtttttag ctaaccatct acctgcataa agtccacttc tatcaacttt agtataatct
     9961 ttgctcgatt gcgcaccacc acctattgga gaataacctc caaaactatc tactataagt
    10021 tttcttcctg ttaaaccact atcatgtaaa gaagagtgat tgacatattt accagttgga
    10081 ttgattaaaa ttctagtttt attaggatca aaaagttctt ttggtaaatt actatctaag
    10141 ataagtttca tcactaaaga tcttaaatct tctattttca tactttcaac acaaggtgca
    10201 gaaactacta tagtatggat actttgcggt ttgcaatttt caaaattcgc cttagtgcca
    10261 taatcaatag ttacttgagt tttaatatcc actccaagtt catgtggatt tgcttttgca
    10321 taagcataaa ctctatcgca tagcattctt gcataactaa tagctgctgg catgtattct
    10381 tcagcttcgc aacttgcaaa accaaacata ataccttgat cacctgctcc tgtttcgcca
    10441 tcttcttgat cgacaccttg attgatatca gggctttgtt catttaaaaa caccataaca
    10501 tcaacttcat caggatgcaa acactgctct ttgctaaaat gccctgctcc gtcataacca
    10561 atgtttttta aaacatcttt aactaaatta tcgtaatcag ctttactaag tttgtgattt
    10621 gacttaactt cgcctcctat cacaacctta tttcctgcga caaaaacctc gctcgccacc
    10681 cttgaatttt tgtcattttt caagagtata tccactatcg tatcagcgat tatatcagca
    10741 cacttgtctg gatgacctgc acttacgact tctgaagtga atagatacat aaaaagtcct
    10801 ttcatttaaa atgaaccaca attgtatcca aataaactta tcaaagcttg ataaattaaa
    10861 aattctctaa aattaagcaa aagttagtta aaatcaactt ctgatataaa aaatatttaa
    10921 aaggttttta tgttttctaa aatcattcaa agctacgcta aaggcaacct catagttcaa
    10981 atttgtatag gtatagcact aggaatactt ataggcatta gttctaaaga aatatctgaa
    11041 attgcaaatt tacttggaat actttttaca agtgccttaa aagctatcgc tcctatgctt
    11101 gtttttattt taattttaac ctcaatttgc actaaagatt tttctcaaag tggtgctaag
    11161 atcaaaaata ttattatttt atatatagta ggcacctttc ttgcttcagc ttgtgcggtt
    11221 cttgctaatt ttttctttcc cgtaaagctt gttttagatg gagttcaaac tgctacaaac
    11281 tcatctccaa cccacatgag tgatattttc aaagatcttt tatttaaaat tgtcgataat
    11341 cccataaatg ctctttcaag cggaaattat ttaggaattt taacttgggc aatagctgga
    11401 ggtatagcat taaaacactg ttctaacgaa gcaaaacaag tttttataga tatcaatgaa
    11461 ggggttttaa aaatcgttaa atttgtagta aaacttgccc cttttggaat ttttggactt
    11521 gtggctaatt ctgtagcaca aacaggagca caaggtttgc taagttatgt aaaactttta
    11581 attttacttg tagctactat gctttttgtt acttttgtta tcaatgcctt aatagtcttt
    11641 ttttatacaa gaaaaaatcc ttttccttta atttttatct gcttaaggca cagtgcattt
    11701 tttgcctttt ttacaagaag ttcagcggca aatattcctg taaatatggc actttgcgct
    11761 aaacttggca tagataaaga attttatagc atttctatac ctttaggagc tactatcaac
    11821 atggcaggag cagcagttac tatagctatt ttaagtctta ctgcagccaa taccgttggt
    11881 atagaaatca gtcttttaca agccttttta ttaagcatta ttgccacttt tgcagcttgt
    11941 ggggctagcg gagttgcggg cggatcttta ctgcttatac ctttggcttg ttctttattt
    12001 aatatagact atgatattgc tatgaaggta gttgccatag gttttattat aggggttatt
    12061 caagatagtg ttgaaactgc tttaaatagt tctacagatg ttctttttac agcaatttgt
    12121 tctaaaaatg aattaaatta caatatcaaa taaggtaaaa acatgcgtca tctcatcact
    12181 acaaaggatt ttaataaagt cgaaattatg gagcttttta aagaagcaag tgatttctta
    12241 gatgaaaaac ctagaacttt tcttgaagga aaaagtatca cgacaatttt ttttgaaaac
    12301 tctacacgca ccctttcatc ttttgaaagc gctgcaagaa gattaggtgc tagggtttta
    12361 cgccttgatg ttttaagatc aagctctagc aaaggagaaa ctctttatga tactgctgct
    12421 aatttagatg ccatgagtcc taatgctatt gttgtaagac acgcaaactc aggagttcct
    12481 ttgatattag caaagcatat gcattgtcca gttgttaatg gaggagatgg aaaacacgcc
    12541 catcctaccc aagctttgct agatttattt actatttata atcattttca aggcgatgtc
    12601 gaaggtaaaa aaatttgcat cgtaggtgat attaaaaatt cccgcgttgc agcgtccaat
    12661 atagaacttt taagcaggtt taatcttgat attaccctag tagctccacc acattttatg
    12721 cctaataccc atcttaaaaa acattataag cttgatgaga atatcatagc aaattcagat
    12781 attatcatga gtcttagaac acaaacagaa agacataata aaaccgttta tgcttcactt
    12841 aaagactatg caaatgattt ttgcattcaa aaaagcttag taaaggataa aaagcttatt
    12901 ttactacatc caggccctgt taatcgcaat attgacataa gcgatgaaat gatgagcgat
    12961 gaaaggactt tagttttaaa acaagttaaa aatggagtgg ctattagaat ggctgttctt
    13021 aaaaaactca tactagaaaa tgaaggataa aaaatgttag aatgggattt aagtgcttta
    13081 tttcacgata aagaatcatt gcaaaatttt acacaagatc aaatccaaca aagtttaaat
    13141 ttcaaaaaaa actatgaaaa taaactttat acattaaatg ctaatgagtt tttgcaagct
    13201 ttaaaagatt atgaaaattt aaatcaagct cttggtaaaa tcatgactta tgcttatttg
    13261 ctttttgcta aaaacactca aaatggttct ttttacgcac aatacgaaga agaatgcaaa
    13321 aaaatagaag aaaatttact ctttttcgag cttgaatttt gcgagttagc tcctgagaaa
    13381 agtcgagaat ttacaacttt ttgcaaagat tatgattttt atctttctaa tttattgcaa
    13441 aacaaacgct ataatcttag caaaaacgaa gaacgcatta tgctttatct ttcaaataca
    13501 ggtgcaaatg cttttagtag actttttgat gaaagtatga gtgctttaaa aatccctttt
    13561 gaaggtaaaa aacttagcga agaagaaatt ctaagcaaaa tgtatgatga agatagaaag
    13621 atacgcaaaa aagctgctaa aaaattcagt aaagttttgc aaaaaaatag cagactttta
    13681 agttttatta tcaatatgat aaaaacagaa agaaaaaata taagcttatt aagaggttat
    13741 gaaaatgctg aaatttcaag acatatcagc aatcaaattt cacaaaaaag cgttgattct
    13801 ttgatagcaa gtgcgcaaaa acattttaac ttagtatcgc aattttacaa aagaaaaaaa
    13861 caaattttag gctatgatga gcttaaagac tatgatagat atgcacccat aggaaaagaa
    13921 gcaagttttg attttaaaac aagtaaaaat attgttttag aggcatttca agctttttct
    13981 ccgcaatttt ataatatagc aaaaaatgct tttaatcaag gctggattga tgtttatcca
    14041 caagaaaata aacaaggggg tgctttttca cattctgcaa cttctgatgc acatcctttt
    14101 gttttattaa actacaccga taaaaggcgt gatcttttta cacttgcaca tgaattagga
    14161 cacaccatcc atcaaaaact ttcttataat gtaagctatt taaatcaaaa cacgccttta
    14221 accaccgcag aaacagcttc agtttttgct gaaatgctcg tatttgattt tattaaagat
    14281 aagttaaaaa aagaagaact cctatcttta tatgcaaata aaatcgaaga tatttttgca
    14341 actttttata gacaaattaa ttttacttgt tttgaaagac gcttacatgc tcaagaaaat
    14401 gaacttagca ccgaagaaat caataaaatt tggatggaag aatctcaaag gatgtttcaa
    14461 gacagcgtaa aacttacaaa aaattatgct tcttggtgga gttatattcc tcattttatc
    14521 cattctcctt tttactgcta tgcttatgcc tatgcacaac ttttagtttt agctctttat
    14581 ggactttaca aaagtaaaaa atgtgaaaat tttaaagaac tttatatcaa aatgctttct
    14641 ttaggtggaa gcgtgagtcc aaaagaacta gtaggaatgt ttggatttga tatagaagat
    14701 gaaaattttt gggaaatagg cataaaagaa attcaaaaac tcatcaatga attcatggag
    14761 ttacaatcat gctagaaaca atcttaaaaa atgaaaattt tatccatacc atgcaaaagc
    14821 attgttatga agttatttca caccttatag aagaaaatat agaattttcc atagttgcaa
    14881 atacaaattt catagatttt aaccctgaac ttcccaaaga gcttgatatt aaacaaaatc
    14941 cttatgctct ttttgctctt ggaggataca cctttgaatc catacaacta aataaagatt
    15001 tcattcaatt tcacgcaggt tttggaaatg atgattttga tagttttgta aaggttgatt
    15061 taggagctat cacgcaaatt caaatagaaa atagcatttt atttgttaat tttagccttt
    15121 ataaacgcga agatagtaaa aatttacaaa aatctaaaaa tatattttta aataatccaa
    15181 aaaataaaga tattttcaaa aaatgaatct atttgaagat ttaaatgata gtcaaaaaca
    15241 agcggtaagt cacattgatg gagctatgct tatcctagcg ggtgcaggta gtggaaaaac
    15301 caaaactatt accactcgtc ttgcttatct tatcggtgaa gtaggcatcc cctcgcataa
    15361 cactcttact cttactttta caaataaagc agctagtgtt atgcgtcata gagcattaaa
    15421 ttttctgcaa ggcaatcaca atcctttgct ttgtaccttt cataaatttg gacttttatt
    15481 tttaaaactc cattttgaaa gattggagcg taaaaatagt tttattgtta tcgatacaga
    15541 tgatacaaaa aaaataatta aagacttaat ccatgataaa aacaaagata atgtctatga
    15601 tattatcaaa tacatatctt attgcaaaaa tgaagacaaa agagtaagca atgtctttga
    15661 agatttaaat ttactaaaag aacataattt tgaaaaatat caaaatgaat acaaatttgc
    15721 caactattac cgtgcttatg aagaatactt attaaaacaa aattttgtag attttgatga
    15781 tcttttattg ctaagcaatc tcattttaga aaatgatata aattttgcca aagaacaaag
    15841 cttactttat aattacatta cagttgatga gtatcaagat accaatacct tgcaatataa
    15901 aattctaaaa aatctatgtt gtatgcatga aaatatcaca gttgttggtg atgatgatca
    15961 aagtatttat agttggcgtg gagcaaaaat tgaaaatatt ttaaattttc aaaacgattt
    16021 taaaaatgtt aaacttgtaa aacttgaaca aaactatcgt tcagtaggga ctattttaca
    16081 agcagcaaat aatctcatat ctcacaatga gcaacgactt ggaaaaactt taatctgcac
    16141 taaagatact ggggaaaata ttaaaatatt aaaaaacgaa aacgaaaaag atgaaggttt
    16201 atatattgct caagaagtga aaaaattgct aaattctgga gtagaagcta aagagatcgc
    16261 cattttattt cgagttaatg cactatcaag agcaatagaa gaagcattta tgaagaaaca
    16321 aatttcttat aaactactta atggtatgcg tttttatgag agattagaaa taaaagattt
    16381 aatctcgtat cttagactta tcttaaatcc aagcgatgat ttgtcgttta aacgtattat
    16441 taatcgcccc aaaagatcca taggagaaaa agccctaaaa aatttagaag aatatgcaaa
    16501 aaaacgtcaa atttcacttt ttgatgccct atgcgaaagc gatggtggtg taggaatttt
    16561 aacaacaaaa aaagcacaaa atgaagcaaa tatttttata caaaatattc acactctaaa
    16621 aagctacgat aatgcaaaaa aggtttttga caatatagaa gaattattta aaattaaaga
    16681 ttatttttca gagcaagatg atggagatga aagaatcaga aatcttgatg agttttatgc
    16741 taatctaaga gaaaaactca aagaagatcc caaagcttct ttagaagatc tacttagtga
    16801 aatttcttta ttaagcgatc aagataattt agatgaagaa tgtgtttgct tgatgagtat
    16861 tcatgctagc aaaggtttgg aatttgatta tgtttttata ataggctttg atgaaggatt
    16921 ttttccttta aatagcgaag aaaatctcga agaagaacgc cgtcttgctt atgttgccat
    16981 cactcgcgcc aagaaatttc tcacaataag tgttgcaaat tctcgttttt atcatggttc
    17041 aagagcaaac atcaatccta gccgcttctt agaagaaagt aaattaatca atgaaaaatc
    17101 aaaaaatcaa aatatacaaa aaactagttt ttgcaaagga gatctagtta aacataaaat
    17161 ttttggcatt ggcagggttg ttgaagttaa taaaagcgga aaagaggaaa agcttaatat
    17221 taattttggt ggcataatgc gtgtaatcat ggcaagcttt gtggaaaaag cagtatgaac
    17281 aagatctttg cagcctttaa accaaggggt ttgagctcta atgccttttt aagcacttta
    17341 aagaaaaaat ataaaaataa aaaagcagga tattctggca ctcttgatcc tttcgccaaa
    17401 ggggttttaa tcgttgcatt tggacaatac acaaaacttt tccgtttttt aaaaaaaact
    17461 ccaaaaacct ataaagctac tttatggctt ggagtttact ctttaagtct tgatgatcaa
    17521 aatataaaag aaattcaaaa tataaaagaa tttgatctta caaatttaaa acaaatcatt
    17581 aatcaaatgc aaggaattat ctcctataca ccaccgcaat ttagcgccaa aagaatcaat
    17641 ggaactcgcg cctatgaact tgcaaaaaaa ggtatagaag taaatttaaa accttgtcaa
    17701 atggaagtat ttgattgcaa gattttaagc tataatcatc cttttttaaa tatcgaaatc
    17761 acagtcagtg aaggtgctta tataagatct tattgtgaac tttttgctag aaaactaggt
    17821 attaatgcga ctttaagctc tttagagcgc attaaagaag gtaaatttgt ttataataat
    17881 gagaaaagct taaatgtgtt aaaatacatt gacctaaaac caaattttat caaggattta
    17941 aataaactag aaaatggtgc taaaattttt gtcaaagaat tagattttca tgatga
//
LOCUS       DARGEX010000024        17791 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.024, whole genome shotgun sequence.
ACCESSION   DARGEX010000024 DARGEX010000000
VERSION     DARGEX010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17791
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.024"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            143..700
                     /locus_tag="SF010_000653"
     CDS             143..700
                     /locus_tag="SF010_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8229605.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISIKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            700..1566
                     /gene="ftsY"
                     /locus_tag="SF010_000654"
     CDS             700..1566
                     /gene="ftsY"
                     /locus_tag="SF010_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG8229606.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1566..2906
                     /gene="radA"
                     /locus_tag="SF010_000655"
     CDS             1566..2906
                     /gene="radA"
                     /locus_tag="SF010_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG8229607.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2975..3655
                     /locus_tag="SF010_000656"
     CDS             2975..3655
                     /locus_tag="SF010_000656"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG8229608.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3652..3843
                     /locus_tag="SF010_000657"
     CDS             3652..3843
                     /locus_tag="SF010_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229609.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3865..4713)
                     /gene="metF"
                     /locus_tag="SF010_000658"
     CDS             complement(3865..4713)
                     /gene="metF"
                     /locus_tag="SF010_000658"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG8229610.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4723..6987)
                     /gene="metE"
                     /locus_tag="SF010_000659"
     CDS             complement(4723..6987)
                     /gene="metE"
                     /locus_tag="SF010_000659"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG8229611.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6999..7769)
                     /locus_tag="SF010_000660"
     CDS             complement(6999..7769)
                     /locus_tag="SF010_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8229612.1"
                     /translation="MTLFTKAFCVATLFTGFAWADEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7780..8772)
                     /locus_tag="SF010_000661"
     CDS             complement(7780..8772)
                     /locus_tag="SF010_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG8229613.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPSNA
                     FDKLYGKNSYEHCKIIHYPKSSKNTTQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(9084..9578)
                     /gene="luxS"
                     /locus_tag="SF010_000662"
     CDS             complement(9084..9578)
                     /gene="luxS"
                     /locus_tag="SF010_000662"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG8229614.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVIKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9693..11111
                     /gene="gatB"
                     /locus_tag="SF010_000663"
     CDS             9693..11111
                     /gene="gatB"
                     /locus_tag="SF010_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG8229615.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKAHFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            11108..12004
                     /locus_tag="SF010_000664"
     CDS             11108..12004
                     /locus_tag="SF010_000664"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG8229616.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGVRAWLKENFINRGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGNFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            12014..13192
                     /locus_tag="SF010_000665"
     CDS             12014..13192
                     /locus_tag="SF010_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8229617.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEENFALFLQNVAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCQFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13200..14726)
                     /locus_tag="SF010_000666"
     CDS             complement(13200..14726)
                     /locus_tag="SF010_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG8229618.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14868..15674
                     /locus_tag="SF010_000667"
     CDS             14868..15674
                     /locus_tag="SF010_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8229619.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKKLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15671..17047)
                     /locus_tag="SF010_000668"
     CDS             complement(15671..17047)
                     /locus_tag="SF010_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8229620.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            17316..>17791
                     /gene="cetC"
                     /locus_tag="SF010_000669"
     CDS             17316..>17791
                     /gene="cetC"
                     /locus_tag="SF010_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG8229621.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIF"
BASE COUNT         5975 a         2528 c         3012 g         6276 t
ORIGIN      
        1 tagttttgaa tgtttgaaaa ggcgtatttt ttgcaatgcc ctaaaatctg ttttttccat
       61 taatatgcct ttaaaaaaat attatcttat gtatgttata attttagcat ttttataaag
      121 aagaataaag gattgataaa taatgaagat taaaaaaata cttttactag tggcaatatc
      181 ttgtttgttt gttgcttgta gcaatgataa agaaaagcag caaaatgatg taaatttaag
      241 caccgaggca agtataaatc aaagtgatga tatgaatttt aaacttaatt tgattgatgg
      301 aggatcaatt tcaattaaaa aagaaaatgc cgttttaaat ttcaacgatg aagataaggc
      361 aactttgttt gtatttttta ccacttggtg taccccttgc attgctgaaa tccctcatct
      421 taataaatta caagaaaagt ataataatga ttttaatata gttggggttt tattagaaga
      481 taaatctaac gatgagattc aaaaatttat agaacagcat aaaatatctt ataaagtcgc
      541 taatggtgaa aataactatc ttttagctaa agctttaggt ggggtaaatg gaattcctac
      601 catgtttctt tacaacaagc attctaaatt gattaatcag tatttagggc ttattcctga
      661 agaaatgcta gaaattgata tacaaaaggc tatactttaa tgtttaattt ttttaaaaaa
      721 ggacttgcaa aaactcttga aaatattgtt gggattaaag gagagaataa aaagataacc
      781 aaagatttgc ttgaagaaat tttgcttgaa gcagatgtaa gttatgaaat agttgaagag
      841 ataatttatt atttaccacc tcaaaatgaa gtaaaaaaag aagatttaaa gcgtgttatg
      901 ggttcttatt ttctttatga aaaaaaagaa accaatcaag aaaaaccttt tgtagagctt
      961 attttaggag taaatggagc aggaaaaaca acaagtattg ccaaacttgc ttatttatat
     1021 aaaaaccaaa atcaaaaagt gattttagga gcgtgtgata cttttagagc aggtgcgatt
     1081 gaacaattaa aactttgggc gcaaaaagtg gatgtagata tagttttaac tgcacaaggg
     1141 catgatcctt cagcggttgc ttttgatacc atttctaaag caaaagcaaa ggattttgat
     1201 agagttatta tcgatacagc agggcgtttg caaaatcaaa aaaatttagc ccatgagctt
     1261 gaaaaaattg tgagaatttc aaacaaagct ttagaaggtg caccccatag aaaaatttta
     1321 gttttagatg gaacacaggg aaatgctgga attttacaag ctaaagcttt taatgagctt
     1381 gtaaaacttg atggtgtgat tatcacaaag cttgatggga cagctaaagg gggtgcactt
     1441 tttagtatag caagagagct tgagcttcct attttttatg taggcgtggg tgagcaaatg
     1501 acggatttgc aagaatttaa tgcaagtgct tatttagata ctttattaga tcctattttt
     1561 gaataatggc aaaaaataaa gcactttttg aatgtcaagc ttgtggaaat caacaaagca
     1621 aatggcttgg aaaatgtcct gattgtggag cttgggatag ttttgtagaa ttaaaagctg
     1681 agcaaattaa agttttaaaa gagcttgcgc aagttagtat gaaaacaagt gaagctgttt
     1741 gtattgaaga tgtggaatta gaacatttta caagatacag cacagatgat aatgagcttg
     1801 atttggtttt aggcggaggg cttgttgaag gttctttagt gcttataggc ggaagtccag
     1861 gtgtgggaaa atctacgctt ttgttaaaaa ttgcttcaaa tttagccaaa cagggtaaaa
     1921 aagtgcttta tgtcagtggc gaagaaagta aagctcagat taaattaaga gctgatcgcc
     1981 ttgaggctaa tactccgaat ttatttttac ttactgaact ttgccttgaa aatattttag
     2041 aagaattaca caaaaaggat tatagtattc ttatcattga ttctatacaa actctatatt
     2101 caaataaagt cacttcagca gcaggaagca tcactcaggt gcgtgagatt acttttgaac
     2161 ttatgcgtgt tagcaaggct tataatatca gtacttttat catagggcac attactaaag
     2221 aaggtgctat agcaggacct agggttcttg aacatatggt ggatgtggtg ctttattttg
     2281 aaggagatgc cactaaagaa attagacttt taagaggctt taaaaatcgt tttggtggaa
     2341 cgaatgaagt aggtattttt gagatgacta ctaagggttt gatcagtgca aaagatttgg
     2401 caaatcgttt ttttactcgt ggaaaggcta tttcaggaag tgctttaggt gttgtgatgg
     2461 aaggatctcg tgctttggtt ttagaagttc aagctttagt gtgtgaaagt tcttatccaa
     2521 aacgcagcgc tacagggtat gaaaaaaatc gcttagatat gcttttggct ttgcttgaaa
     2581 gaaaacttga aattccttta gggcattatg atgtatttgt aaatattagc ggcggagtaa
     2641 aagtaagtga aactgctgcg gatttggctg tggttgcagc tattatttca agttttaaaa
     2701 atcgcccttt gagcaaagat agtattttta taggggagct tagtttaaat ggagaaatta
     2761 gagaggtttt tagccttgat acgcgtttaa aagaagctaa aatgcaaaaa tttaaaaatg
     2821 ccattgttcc ttctaagcct ttggaagata tagggcttaa gtgttttgtt gctaaagaac
     2881 tttcacaagt tttagaatgg atgtaaattt tcattaaaat ataagtaaga ttttgctaaa
     2941 attccgagtt tagaataaaa tttttgagga aaccatgaaa gatttatttt tatttagctc
     3001 tttgcttgat gcaagtcata ctttttctta tttttttcac ataggtttgg tagctttaat
     3061 tgctgttata gtggctatga tggctactcg ttctatgcaa cttgttccac gcggtatgca
     3121 aaatttaggc gaggcttttt tagagggagt tttatctatg ggtagagata ccatgggaag
     3181 tgaaaaaggt gcaagaaaat atcttccttt ggttgcaact ttggggatta tagtgttttt
     3241 tagtaatatt ataggcataa tacctggttt tcactctcca actgcaagtt taaatttgac
     3301 tttgtccttg gctattatag tttttgtata ttatcatttt gagggtatta gggcgcaagg
     3361 ttttgtaaag tattttgctc atttcatggg acctattaaa cttttagctc ctttgatgtt
     3421 tcctatagag atagtctctc atctttctcg tgtggtttct ttgtccttcc gtttgtttgg
     3481 aaatattaaa ggtgacgatt tatttttgat ggtaatttta gctttagttc cttatatagc
     3541 tccacttcct gcttatgtgc ttttaacttt tatggcattt ttacaagctt ttatttttat
     3601 gattttaact tatgtatatt tagcgggtgc aactgttgtt gaggaaggtc attgatctat
     3661 attttagaat ttttcaaagg tgcatcttta gctttaatgc tttttggtgc acttttcttc
     3721 ttttttaaat ataattcttt tttctatctt tgcttgggta ttataccagg tttgctttta
     3781 tctttaattt ttgttttact tatagaaaac cataagctaa aaaatgaaaa taagttaaga
     3841 taaaagcaaa aaatagttta ttttctaagc atgaagctct tctttaagca aatgctttac
     3901 agcttcataa attttaatag ccgctttgga tttattcata gtataaagat gaattccatc
     3961 tacaccactt gtgattaaat cgacaatttg atcgcaagca tacgcgatac ctgcatcttc
     4021 taaagccaaa gtattatttt catatttttc taaaatttta acaaatttag gagggatttt
     4081 agctccgcaa agttgagaaa tttttaaaac ctgtcttttg ttagtaatag gcataatacc
     4141 tgcgtaaata ggtatgtcaa tacctgctaa agcacaattt tgtttaaaag tataaaaatc
     4201 ttcattatcg taaaaaagtt gagtaatgag cttatctgtt cctgcattta ccttagtttt
     4261 aagatggtgt atatcctcga tgaaattttt agattcatta tgtttttcgg gatagcatgc
     4321 ggcataaatt tcaaagtatt cttgtttttt tataaaagaa attaaatcac tagcataaga
     4381 aaaatctttg cttttttcta aattctcaca tatatcgcct cttagggcaa gaatttgatt
     4441 aagatttttt tctttgcatt tttgaagtat ctgagtgatt ttttctttac tagaatggat
     4501 gcaaggtaaa tgtactatgc taggaatttg atattcttcc tggattaagc ttgcaatttc
     4561 taaagtgttt tgtgagttaa tagagcctcc agctccaaag gttacgctga taaaattagg
     4621 gcttaattgc cctaaatcat ctaagatagc atgaagattt ttgatatttt catcctttct
     4681 tggtggaaaa acttcaaaag aaaaactaca catgaaaact ccttataatt gttctcgtat
     4741 tttttgcgta gccgtaacta aatttttaag agaggctata acttcttcat aggctcttgt
     4801 tttaagtccg cagtctggat tgatccaaat ttgctccttg ggtaatttgt ttaaaatttt
     4861 ttctatagtt aaacttaatt cttctacgct tggaactcta gggctatgta tatcataaac
     4921 tcctggtccc acctcagttt taaaacgaat agcttttagg gtatctaaaa gacttaagtt
     4981 tgatcttgaa gcttcaaaag aaatcacatc agcatccata gcgtcaattt cttttaagat
     5041 atcgctaaat tcactataac acatatgagt gtgaatttga gttttagctt ttaccccact
     5101 atgcacaaga ttaaaagcag gaatagccca atctaaatac tcactatgcc aatcactttt
     5161 ccttaaaggc agtttttcac gcaaagccgc ttcatcaatt tgtatgattt ttatacctgc
     5221 attttcaaga tctaatactt catctcttat agctaaggca atttgctcag tgctttcttt
     5281 tagactaatg tcttctcttg gaaaggacca attaagtatg gttacaggtc cagttagcat
     5341 accttttacg attttttgac ttaaactttg tgcaaattta gaccaagcta aggtgatagg
     5401 ctttatgcgc gatacatcac cccaaatcac aggaggttta acgcaccttg tgccatagct
     5461 ttgcacccaa ccattttgag taaataaaaa gccctttaga ttctctccaa aatactccac
     5521 catatcattt ctttcaaatt ctccatgcac taaaacatca agtcctattt cttcttgaat
     5581 ttgtatgcat tctttgattt tttgttggtt aaattcagtg tagttttgag ctgaaatttt
     5641 ttcttgctta aaggcaaggc gattagatct tacatcagca ctttgaggaa acgaacctat
     5701 ggttgtggtt ggtaaaagag ggagttttaa aaattctttt tggattaagg cgcgttcttt
     5761 aaaactaggc gttctggtaa aatcttcttt ttttaaagcc ttaagccttg ctttgacttt
     5821 ttcatctaaa cgctctggga tatttttaaa aagctcttga ttggctctaa agagcggatt
     5881 ttcttcgcta gaatttagaa tttcttttaa atctttaagt tcttgaagtt tttctttggc
     5941 aaaggaaaaa agtttaagat agtttgaatc taatttgctt tcaaattcag tgctataagg
     6001 cacatgtaaa agtgagcaag aagtgtttaa gatgatattt tgtgtatatt tttgaagctc
     6061 tttaataagc tttaggcttt tagcataatc attagtatag atatttttgc cattaataag
     6121 acctgcaaaa aggattttat ctttagcaaa gccgtatttt tgaactaagg ctaagctttg
     6181 tttaccttcg ataaaatcaa gacccaaagc atcaaatttg ctttctaaaa gtttaggata
     6241 aatatctctt aagtctccaa aatagctttg aagtaaaatt ttaagatctt ttttgtgatt
     6301 taaaagttct tggtaaaatt cttcaaacaa agcgatatct tccttgctta aatcataaac
     6361 caaataaggc tcatcaagtt caagccatgt cactttaagt tcatttagtt tatcaaaaag
     6421 ctctatgtaa gcgtttaaaa gcttttcttt ggcgagtttt tgagtttttt catctttaaa
     6481 ggcaatgagc ttaaaaagtg tgaaaatgcc tattaaaaca ggcttgcttt ctatgccaag
     6541 ctctttagct tcgagatatt ctttaaaaat tttatcccct gttaaagcta taatatcagc
     6601 attatcgcac tcaggcacca aataatggta atttgtattg aaccattttt tcattgctaa
     6661 ggctgtaaca tctccatttt ctccttgata acctcgactt tgagcaaagt attcatctaa
     6721 agcatctaaa tttaaatttt tatactttgt atgaacaatg ttaaaaagca cagctgcatc
     6781 taagacatta tcataaagtg aaaaatcatt actagggata aaatcaatgc cagctttttg
     6841 aatttcttgc cagtgtctaa tccttaaatc tttagcactc tttaaaagct cctctttaga
     6901 actttggttt ttaaagtatt tttcaatagc aaattttaat tctctatttg cacctattct
     6961 tgggtaagaa atgattgaat ttttcatatt tgttctcctt aaaatgtagg gattaaagca
     7021 ccctgatatt tttcttctat aaatttttta acttcatcgc tttgcaaggc ctttactagg
     7081 gctttgattt taggaaggtt ttcattacct tctttaacgg cgatgatatt gccatattca
     7141 ctatatttac tttctgtata aagcccatct tttacagggt ttaaacctgc taaaatagca
     7201 aaattgctat taataagaga ataatctaca tcatttaaac tccttgtaag ttgagcgtct
     7261 tttaactcta caaatttaag cttcttagga tttttagtga tatctaaagg agtgatgagc
     7321 tcattatcct taacttctat aagtcctttg cttgctacaa tgcgtaaagc acggctttca
     7381 tttgtaggat tattgggtat agaaatgctt tgtccttcct ctgggttaaa ttctttatat
     7441 ttttttgaat acactgccat aggttctata tggatactgg caacttttac aagatgggtg
     7501 ccttgccttt gattgaattc ttttaaataa ggttcatgct gaaaataatt agcatctaac
     7561 tcaccatttt caaccattac attagggatt accccatcat taaattcata aatttttaaa
     7621 tcataacctt gtttttgaag tgctgatttt ataaatctta aaatatctgc atgaggtgtt
     7681 atagaagagc caactttaag ttcttcatct gcccatgcaa aaccggtaaa aagagtagcg
     7741 acgcaaaaag ctttagtaaa taaagtcatt ttttctcctt tatgcaaaac taaatttttc
     7801 tatcaagtca ctatgataaa tacttgctac atcaggatga gagcgtatca ttcttttaaa
     7861 ataattactt gcaacatttc ttaaaagtgg atttttagga tcagtatcca cacctttgct
     7921 ttctttggca agctctggat ttaacttaaa aataggtata tccttatcaa gttgcactcc
     7981 aagaaaataa gctatgctaa agcgttcttt tgggcttaaa ttcacgcggt gaatagtagc
     8041 ttttaaatag ccattggtag ctagttctaa aaattctcct atattaacta caacgctatt
     8101 ttcaagtggg ggtatactaa gccatttacc atctataaaa gcttcaagtc cgctttgttt
     8161 ttcttgaaaa acaaaagtga taagcccgcc atctttatgt gaacccacgc cttgagtagt
     8221 gttttttgaa cttttaggat aatgtatgat tttacaatgt tcataagaat tttttccata
     8281 aagtttatca aaagcattgc taggcagatc aagagcttga gcgaaggctt ttaaaagctt
     8341 taaacaagct tttttggttt gtttgtgcca agttaagaaa gtttttttaa gttctggaat
     8401 ttcactaggc caaagattag gaccttctag tctttgccat aagggtgagt ttaaattcca
     8461 gtttaaagca tctctttctg tgcctatatc cagttgttct ctataatcct tagatcctgc
     8521 tgtgtattca aaaccttcgc tagtataacc tctaaattga ggagaatgta ccatagaaat
     8581 aagctctttc gaacttctag aaagattaaa aaattctttg ccaagtttga ataatttctc
     8641 gtttaaattt ttatctatac tggtattgat aagataaaaa aaacctattt tagaagcaat
     8701 ttctcttaaa tttttaagaa aagtgctttt atctttttca taagcttgta aatcaagtat
     8761 aggtaagttc atttttgctc cttaaattaa aattaaggat aagaagatat tttgaattaa
     8821 aattttatta gagaaatttt tgtaagttaa gattttaaat gagtattttg aaaaaataaa
     8881 cttttttgac tttcttacac attatatctc cttatccact ttttggacct ttggaaacat
     8941 aatgttaagc caaaggacgc actagatact acacatctcg cacatcagtt tcattttttc
     9001 tccttttaaa ataataaaat ttcaaaatca tatataaaaa tatattaatt aaagcttaat
     9061 tgtttaaaaa ataaagattc tttttaagca ttctcgagtt ttaattcttt gttattcatt
     9121 atgctaatac ctagatttaa aaccttttgg gcaatttgtt tggcttcatc taaagaatgc
     9181 attgcgcaag ttccgcattg atagatatta agttcaggaa ttttgctttg atcgcttacg
     9241 cttaaaacat ctttcatagc tgctttccaa gctttagcaa cacttttttc atctggtgtt
     9301 ccaattaaac tcatataaaa acccgtgcga caacccatag gtgaaatatc aataatttca
     9361 actgaatttg aatttaaatg atctctcata aatcctgcaa ataaatgttc taaggtatga
     9421 gtaccttttt cgctcataat gtctttattt ggtatgcaaa aacgcaaatc aaacacgcta
     9481 atatcatcac ccttaggtgt ttttataact ttagctaaac gcacagcagg agctggcatt
     9541 ttagtatggt caactttaaa gctgtctaat aatggcattt taactcctta aatataaatt
     9601 gtctaagaat tatagcattt aaagttaata tttaaagcct ttctaaaaga aaaaaagata
     9661 aaataaaaca tttaaaaatt caaggaaatt ttatgtttga agtagttata ggtcttgaag
     9721 ttcatactca gttaaataca aaaacaaaaa tcttttgctc atgtgcaact tcttttggag
     9781 aagctccaaa taccaatgtt tgtcccactt gtttggcctt accaggagct ttgcctgttt
     9841 taaatgaaga ggctgtaaaa aaagctatag cttttggaaa agctgtcaat gcaacaatta
     9901 ataaaaaaag tgtttttaat cgtaagaatt atttttatcc agatttacct aaagcctatc
     9961 aaatttcaca atttgatatc cctatagtag aaaagggtga gctttttatc aatgtaaagg
    10021 gtgaaaataa acgcataggt attacaagag cacacttaga agaagatgca ggtaaaaata
    10081 tccacgaaaa taatttttct aaagtggact taaatcgtgc aggaactcct ttgcttgaga
    10141 ttgtcagcga acctgagctt agaagtagcg atgaggcagt agcttatctt aaaaagcttc
    10201 attctatcat acgcttttta gacatttcag atgcaaatat gcaagaagga agttttagat
    10261 gcgatgcaaa tgttagtata agacctaagg gtgatacaaa actttatact agggtagaga
    10321 ttaaaaatct taattctttt cgttttatcc aaaaagctat agaatatgag gtaaaaagac
    10381 aaagtgaggc ttgggaagat ggaacttacg aacaagaagt agttcaagaa accagacttt
    10441 ttgatacaac aaatttagtt acaagaagta tgcgtggtaa agaagaagcg gcagaatatc
    10501 gctattttcc agatcctgat ttattgcctg ttttattaaa agatgagttt ttggatatta
    10561 aaatccctga acttcctgat gagaagaaag cacactttat agacgagctt ggtataaaag
    10621 aaagtgatgc tgaggtttta atcagttctt tagaaatgag tcgttttttt gaaagtctta
    10681 tttctcaaaa tttaaatcct aagctttgtg taaattggtt aaatactgaa cttatgggac
    10741 ttttaaaagg agaattgact atagaaaatt ctcccgtaga tgctcaaaag cttggagttt
    10801 taattaaacg tatagaagat ggcaccatca gtgcaaaagc ggctaaagat gtcttagctt
    10861 ttgtatttga aaatactagt gtggaaattg atgaagctat agaaaagcta ggacttaagc
    10921 aagtaagtga tgattcagcc atagaagcgg tgattgaaca aattttaaat gcaaatgccg
    10981 ataaggttgc agagtataaa agtggtaaag acaagctttt tggatttttt gtgggtcaaa
    11041 caatgaaaga aggcaaagga gcttttaatc ctgcaaaagt aaatgaaatt ttaaaaacaa
    11101 agcttggttg atgcgtatag cggttattgg tgcgggaaaa tggggcagtg ctttacatct
    11161 agccttaaaa gaaaatcaca attgttttat cagttctttg catcagcgtg atttagaaga
    11221 ttttgttagc ataaaagaag ctttagaatg tgaatatctt gtttttgctt taagttctca
    11281 aggggtgcgt gcttggctta aagaaaattt catcaacagg ggacaaaaaa ttttaattgc
    11341 ttcaaaaggc atagaagatc aaagttgtca atttttagat gaaatttttt tagattttgt
    11401 accaaaagaa aatttttgtg ttttaagcgg tccttctttt gctgctgaag taatgcaaaa
    11461 acttcctact gctttgatga ttagcgggat aaatcaagag ctttgtaaaa aatttgcaag
    11521 ttttttccct gattttatta aaacttatat tgataatgat gttcgtggtg ctgaaatttg
    11581 tggtgcttat aagaatgttt tagcaattgc aagtgggatt agtgatgggt taaaacttgg
    11641 caataatgca agagcggcac tgatttcaag agggcttata gaaatgcatc gttttggtaa
    11701 tttttttggt gctaaagaag aaactttttt agggttaagt ggggcagggg atttgttttt
    11761 aactgcaacg agtgttttat caagaaatta tagagtaggt ttaaaactgg cgcaaaatca
    11821 aaaattagat agtattttag ctgaacttaa tgaagtagca gaaggtgtaa aaactgctta
    11881 tgctatagaa aaattagcaa aaatgaaagg aatttataca cctattgtaa atgaagtagt
    11941 ggcaattttt aagggtaaaa gtgtgcaaga agcaacgcag aatttattaa agcaaaatga
    12001 ttaaggaaaa atcatgataa ttaaaaatgc aaaaatttat ggagattctt tacaagatat
    12061 agagattaaa gaaggaaaaa ttaccaatat tggttctaat ttacaaggtg aagaaatttt
    12121 agatgctaaa ggtatgactt tacttccatc ttttgtagat ttgtgtgtga gtttaaaaaa
    12181 cgataaattt tctttagcta atttagaact tttagaaaat gagtgtctaa aaggaggaat
    12241 ttctagtata gttttgcgtg attgcatgga ttttgatgaa gaaaattttg ctttattttt
    12301 acaaaatgta gctcaaagaa agatgcaaat tttttcaagc gtgcgggtta aggatgcaaa
    12361 cggtaagctt aaaaatttag ccactctttt aaataaaggt gcttgtgctt tagagcttga
    12421 cagctcttta gatgcaaata ctttaaaagt aagttcacaa tatgctttta tgaaagactc
    12481 tccaattttt gtgcgttgtt atgataagga ttttgatgat aatggagtga tgaatgattg
    12541 tgaaatgagt tttgagctag ggcttatagg catgagtaaa atcgctgaaa ctagccagat
    12601 agctaaaatg aaagaattgg ctaaatttta taaaaataaa gttatttttg atcttttaag
    12661 tttgaaagat tctttagtat tattagatga aaaggattta aaacttgtaa gcattcatca
    12721 tcttatcaaa gatgatagtg cttgtgaaga ttttaatacg gctgcgaaac ttatgccacc
    12781 tttaagaagc aaagaagatg ttttggcttt aagagaggct ttaaaagaag gaaagattag
    12841 ctttttaact tccctgcata gtgcaaaatc aatttcttta aaagatttag cttttgatga
    12901 agcggctttt ggaattcata gcgtatgcga atttataagt ctttgttata cttttttaat
    12961 caaagaagga tttttaaatt ggcaagagct ttgtcaattt acaagtaaaa atcctagtga
    13021 atttttaggt ttaaatagtg gagttataga agttggcaaa gaagctaatc tagttctttt
    13081 tgatgagaat gaagaaattt ttgctccaaa aagttctctt tattctgagg ataaactttt
    13141 tggaaagatt aagatgcata taattaaagg aaaaaatatt ttagaaaaat aagctttact
    13201 taaattccta aagatagttt aaatcctaaa aatacaagtg ctgccataat accagcggct
    13261 ggtaaagtga taatccaagc caatcctata ggcttcatca taatccaatt tgcgttttta
    13321 ttatacactc ctatacccaa tatagcacct atgagtatat gggtggagct aacaggaatt
    13381 ccaaattgtg tagctaagag tataactatg cttgcaccaa gttctgcaga aaatccagta
    13441 gtagggcgta tggttgcaag ttttgaaccc actgtagtaa tcacttcttt acctaaaaac
    13501 caaagtccta caactagagc aactccaaac atagctaaag ctgcaaaagg tacaggagaa
    13561 gtcgcgttaa ttgtaccgtt ttttaagaca tctaaaatcg ctgcaaaagg acctatagca
    13621 ttggctatat cattggctcc gtgtgaaaat gcaaaactag aggctgtaaa tatttgaaac
    13681 catgagaaaa ttctatcagt agttttatta agttctgttt ttttaacgat tttgactata
    13741 gcaaatgtta caacataact tatagttcct ataattccga taatccaaaa gttttgtaaa
    13801 atatccaaag tgctaacatt atttaaacct ttaaataaaa acattgccga aatgatagca
    13861 gcagcaatac aagcaatgat tggcatatga gtttttaaaa tagagtaaat atctatatct
    13921 ttttcttgat ccttaaattc cttcatttta tttctataga aattattttc ttgttcttct
    13981 tcatccaaag ctatagcgga aagttctttg atttgttctt cttgggattt tgtttttaaa
    14041 tttaaaaaat attcttcttt gaattttttt ctttcttttt tgatattttt caaatcatca
    14101 tttagttttt ctgatggttt taaaattttc ttatcaatat atgaataaat aatataagct
    14161 acaatacccc ctaaaagagg agaagctatc caagaaatag ctattcttaa aatttcactc
    14221 catttaacca tagagagtgt ttggattcca tcaaatttta aaagccccat cataatgcta
    14281 gcacctacaa tcccaccaac tatactgtgt gtggttgata caggtaagcc tttcttggtt
    14341 gcaataaaaa tccaaacccc agagcttaaa agtgcagcaa gcataatgat aacaaaaagc
    14401 ataggatcta aagaatttgg aaaaataaca ataccgctgc gtatggtttt agtaacttct
    14461 gcgcctgcga agattgcccc gcttagctca aaaacagctg ctataattaa agcttgttta
    14521 atggttactg tttttgcgcc aacgcttgtt ccaaaagaat tggctacatc atttccacct
    14581 atattaaatg ccataaaaat gccaaatata gaagcaagaa taaaaagaat caattgatgt
    14641 tgcgaaatat aaccaaatcc ccaaataaca aatgcgatag tactgataat aaaaataaca
    14701 aaagctatga ggttgtcttt ttgcattaat aacccttttt tattttaatt atacacttat
    14761 ttactttaaa tttgctaatt ttatttttta gtctttgtgg aatttttatt tatattattt
    14821 ttttataata aatacttaaa caagaaataa taaggaatat aagaataatg aggggtattt
    14881 tttatataat agcattgttt tctttactca atggcgatga acttacagag gctttagcaa
    14941 aaaataataa tcaaaattct tgggagcact ttgattataa aaataccaaa gaagctccaa
    15001 aaattcaaga agagaatgtg gattttaaaa gcacttttga tagcttactt tcaaaaactt
    15061 tagaaaataa taatggtata gataaaacag atgggaattt agattttcaa aatgaaaacg
    15121 cgcaggttaa aaatttaagt tctctttatg agggggagaa taattctttg ctttttcaaa
    15181 aagaactttt tgtggctcaa gataattata attactcagg gggtttaatc aatcgttatg
    15241 aaaaagatga ttttttattt ggagttaatg gttttattga taaacaaaaa gaacaaaaag
    15301 atactaaaag ctttggtaca gagtttggtt atagtaaatt tataaaggct tatagtaatt
    15361 attatatacc caatgaagca gaaaaaaaat tacagcttgg aatgagtttt gtaattccaa
    15421 cttataccgc ttttgctttt gatataagta aggataatga taaaactaat tatcaagtat
    15481 cttactctcc ttatagtgta tttagtttaa atttattgcg tcgtgattat agtgcaagag
    15541 agactgttga tgatactgtt gttcaagttg gatttagttt taatttcaat gaaagttttt
    15601 taaagcaatt tagaaaaaaa gataatactt tagaggaggt taatcgatat gatttcctcc
    15661 aaagaactca ttagttcatt ccagcattat gaaatttttc tggattgtcc atagcgtagc
    15721 ggaatttttc ccaatcaatt tgtttatccc agatagcaac gattaaagct gctactgaat
    15781 ttccgcaaag atttccaacc gctctcattt cagacataaa tttatcaaca cctaaaagaa
    15841 cacctatagc agctactggt agaacttgtg ctaaggttgc atttgcttct gaaatttcca
    15901 tatttcctag agccgcaagc gtacttccaa gcactataaa acctgatcca gttacaccta
    15961 ctgcaccttt tgaggctatc attaatacta ttaaaatact gatttcgtgt gctaaactta
    16021 aatttacatt gaaagcttgt gctagaaaga ttaagctcat agctagataa atatttgtac
    16081 aatcaagatt aaaactatat cccgttggta aaacaagtcc gactgttgct ttagaaagtc
    16141 ctgctttttc tagttttctc attaaaggag caagtgcaga ctcgcttgaa ctggttgcaa
    16201 aaacgatcaa tacttctctt gagataaatc tcataaattt gaagatattt acttttgcaa
    16261 aataacaaat cagacctaag attccaaata taaaaacaag acatgaaatc agcattacta
    16321 aaagtaaata tgctaagttg atcaaagagc caattccgta ttgagctatg agtacagcca
    16381 ttgctgaaaa ggcggcaata ggactaaaat acataatgat ttgtagaatt ttaaaaacaa
    16441 aattttgtac cacttcaaaa actctttgaa ttgcctgttt gtcttctatt ctcattaaag
    16501 aaataatcaa agcagtaatt atagcaataa ctaaaacttg tatggttttt ccttctgtaa
    16561 aaggtgtgat aatatcagta ggcatagcat cttttaaaat atgcataatc tcagagctcg
    16621 cacttacttc tgtggtttga gaaatgtatt tttgaacgct ttttgtatca agttgacttg
    16681 gatcaagatt cattccatgg cctggttgca taacatttgc cataaaaata cctatagcaa
    16741 gtgctaaagt acttacaact tcaaagtaaa taaccgcttt agcaccaatg ctacctactt
    16801 tttttaaact ttcaagacta atgatgccca aaaccaaagt aacaaaaata atagggccta
    16861 taagaacctt taaagcacct ataaaataat caactcctgg tttgctagca atggctaatt
    16921 ctttatctgt atagccaagt acaatacctg taataatgcc tataatcacc caaaatccaa
    16981 gacttttgat aatacgttta tataaaggcg gttttctttc agctaaagtt tgacttaaag
    17041 tttccaagtt tattcactcc ttttgatctt tgtaaaatat aattttaaca atgtgtattg
    17101 taaattttaa caaaaaaaca aatctagaaa tactttcttt tatatgatat gataattttt
    17161 tatataaatg ttacaaaatt tctcattatt tgcattataa aatttaaaat atttttgaaa
    17221 attttataat tttgcaattc agtttgcttt ttgttgtttg ttattggtaa taattctatt
    17281 tttgatttat ttgttttatt gggatgtttt aaattatgaa agaaatagtt ttgtctgaaa
    17341 atgctttaat tacttctaaa acagatctta aggggaatat catttatgcc aataatgact
    17401 ttttaaaata cgcaggttat aaagttgatg aacttttgta taaatctcat aatatagtaa
    17461 gacatgaaga tatgccacgc actgtattta aatgtctttg ggattatatt caaaaaggag
    17521 atgaaatttt tgcatttgtg aaaaataaag ccaaagatgg taatttttac tgggtttttg
    17581 caaatgtaag tgcttcattt gatactaatg gaaatatcat caattattat tctgttcgtc
    17641 gtgcacctaa tagaaaatct ctttctataa ttgaagaagt ttataaaatt ttacttgaaa
    17701 aagagcaaaa atcgggcatt aatgctggag tttcagcttt aatggatatt gtaagttctt
    17761 ataaaatgac ttataatgaa cttattttta a
//
LOCUS       DARGEX010000025        17764 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.025, whole genome shotgun sequence.
ACCESSION   DARGEX010000025 DARGEX010000000
VERSION     DARGEX010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17764
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.025"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            133..2328
                     /locus_tag="SF010_000670"
     CDS             133..2328
                     /locus_tag="SF010_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HEG8229622.1"
                     /translation="MRLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGVLSVGRVQTPILSLIVNRDKEFENFKSIDY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKEIKESCENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQNLREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTNTINLEVNQRIFTATQNKTTKSGFRSLWQNVDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLMEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEYMEGCKAIYPDNKGTPNFETKQASNDTTH
                     KCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDNNNGKPKIINV"
     gene            2726..3199
                     /locus_tag="SF010_000671"
     CDS             2726..3199
                     /locus_tag="SF010_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229623.1"
                     /translation="MLDYEKFQTMSKEEYFKKYNVGIRFLFGCDINQKDEIEMISLRV
                     FLPKKYFQEYKNIDIFKTMDLFKKTPLFKELIEQSIKIDFEKREFVMPDFFIKHDIEI
                     IPYFTQGGEKEEELSKEKFFELLKQNKIKELNYLCFLFFGLFCEEEYEYFCKVKE"
     gene            3203..3526
                     /locus_tag="SF010_000672"
     CDS             3203..3526
                     /locus_tag="SF010_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229624.1"
                     /translation="MISVTLLFFLFGLNKLLFNAKNTIYKLLSYIKIHAIFINLRTLL
                     FLILVFNADLSYMGTVLFLVDLMTAISIFFAYAQLAYGFSIKDCMFYLVCGKIDKEWL
                     KEIQK"
     gene            3523..3918
                     /locus_tag="SF010_000673"
     CDS             3523..3918
                     /locus_tag="SF010_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229625.1"
                     /translation="MTEEKLIKKEIFSYTIFIAIIALICIFKNEIWEFVKFIFSNLDF
                     ICGNFANFVSEDNIIFFPVTTLLIVFTIAICAVWGLSNVLSLSLFIMPIFVAVFYIFN
                     IDISLKNLYSSYFIFLIIINGLLWSANQR"
     gene            3915..4160
                     /locus_tag="SF010_000674"
     CDS             3915..4160
                     /locus_tag="SF010_000674"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229626.1"
                     /translation="MKKITIVAYAICFLSGLWFLFSAIKEHFGILSFILGIALIYFGV
                     INIKRILNDSNENKNSKRIKRKTEREREELILKKIGE"
     gene            4165..4431
                     /locus_tag="SF010_000675"
     CDS             4165..4431
                     /locus_tag="SF010_000675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229627.1"
                     /translation="MLEIDNNKEFKILRLNKQEILKIGGYGICDSCNKALSNDGFMIC
                     VLFSCYCEKCYQKWYKVAINHKEDREIEKDVYENIKSKITNIYF"
     gene            4489..5049
                     /locus_tag="SF010_000676"
     CDS             4489..5049
                     /locus_tag="SF010_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229628.1"
                     /translation="MIISVVNKKGGVGKTPFAFSIAKDLEYFLQSNDNSIIEKIYPEK
                     AKILPTPKKIDNCVYDFGGFVEKGVLDIIKESNKIIIPCTSNYNSLLRTLETLNEIGN
                     DDRVCILVTDYRDEKEKRQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYNE
                     NNLSRLSYTNFFNEYQRLLDFIRKDK"
     gene            5052..5318
                     /locus_tag="SF010_000677"
     CDS             5052..5318
                     /locus_tag="SF010_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229629.1"
                     /translation="MEKKPFTIAEALNSETSSQKTFKKADKKSAGRKTIDQKLRRDNL
                     VVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            5365..11160
                     /locus_tag="SF010_000678"
     CDS             5365..11160
                     /locus_tag="SF010_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8229630.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITT
                     SSNGISNFGEQRSKQEERSGANRYGDTSGRTDKSQSIHSNRTPNLFSFISRNDDERQG
                     TDTRRNNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKL
                     SKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYAEYEKA
                     KTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYH
                     FTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT
                     LNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPN
                     NAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFR
                     INEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETK
                     IKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHD
                     TRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKK
                     AFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKI
                     STPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEK
                     YLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYY
                     KQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGL
                     LRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENI
                     YNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTL
                     VAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREK
                     FFSKIATNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYS
                     VKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDI
                     SGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKE
                     KGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNN
                     DIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDI
                     TRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIF
                     CDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFD
                     VYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTN
                     VQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDAR
                     MWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDL
                     RQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYY
                     INDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGE
                     RTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLE
                     KFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQK
                     NYKSDFVPKSPKILEDLNKQSKTIKENEIGY"
     gene            complement(11252..12196)
                     /locus_tag="SF010_000679"
     CDS             complement(11252..12196)
                     /locus_tag="SF010_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8229631.1"
                     /translation="MFKEVCNTLRMSRTELAEKLGLSKTTIDSWSDSSRISKTAKVAL
                     ELMLENYKLRSTIKNFQDGFASLNSYNLGENMMNNVFSKDHNDLINRINHIFNELKLS
                     EITCSRAMGESNYAKINQILNFKMYPDFDFLEKFALRFKINHNWLLTGEGSPFASDLI
                     KSNFNSQFIKEAEEFDRIYIVTSKNNLDHTRIIVINRNNEFGLYQTYFCIGSNFIMEA
                     RECSDLCDLYEFYQKFKYKISCLEFNEDDYRKLLSLKYYPKNILDRGQTSYMLFDLFD
                     LREDDKERYGEFFEKCINIIKSTLKDRENRRIERNGIN"
     gene            complement(12326..13714)
                     /locus_tag="SF010_000680"
     CDS             complement(12326..13714)
                     /locus_tag="SF010_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEG8229632.1"
                     /translation="MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYAKDIK
                     TGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDE
                     ILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMY
                     PNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAK
                     ATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSY
                     YVSYKTKKGITTIWGQDLERIVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEV
                     VKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQEL
                     GNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRW
                     TSVRNNEIKRDG"
     gene            complement(13714..14265)
                     /locus_tag="SF010_000681"
     CDS             complement(13714..14265)
                     /locus_tag="SF010_000681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229633.1"
                     /translation="MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSC
                     DTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLL
                     LNSIKNEKLFTNIEIDKFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDN
                     IRDKIDILSDQLGAIIEKNNERI"
     gene            14459..14740
                     /locus_tag="SF010_000682"
     CDS             14459..14740
                     /locus_tag="SF010_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229634.1"
                     /translation="MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKD
                     FEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ"
     gene            14769..15380
                     /locus_tag="SF010_000683"
     CDS             14769..15380
                     /locus_tag="SF010_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
                     /protein_id="HEG8229635.1"
                     /translation="MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFD
                     VAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENIN
                     PEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREK
                     FEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR"
     gene            15384..16037
                     /locus_tag="SF010_000684"
     CDS             15384..16037
                     /locus_tag="SF010_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229636.1"
                     /translation="MNNTINFNELFSQIRLSSYNNDIVKHYDNLKCVGKITPKLATLE
                     IILRNKLDNKLSEKDNDWIKNSNDEKIKKSKEEIEHREKNRILSHHQYLSRISLGTII
                     HLIKENKLQNSIMDLKNINFRNYNQYNRNFFFENGIKLRFRNTHKVDIVLSLLQNLRN
                     RSYHWENILKTTEKNGKHYPRLTTKIKNTHIGVDPQKIDFFLSDLIKTFNEKILEYC"
     gene            16156..17382
                     /locus_tag="SF010_000685"
     CDS             16156..17382
                     /locus_tag="SF010_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEG8229637.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQNKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYNGFLDDYPAGFMQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLENEYNNARWANSNHAYLKKKGFDENFYLKQDNKGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLK
                     SFKSMEKTQPEKEITR"
     gene            17490..17753
                     /locus_tag="SF010_000686"
     CDS             17490..17753
                     /locus_tag="SF010_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8229638.1"
                     /translation="MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKI
                     KECDKNANSAKTDTECANAYKANYSKSFQKPRESAMEFFKNNK"
BASE COUNT         7205 a         2198 c         2565 g         5796 t
ORIGIN      
        1 aatagtaaaa aaatatcaat atctttaaaa atagtatatt taaattaata atatataaca
       61 ttaataacta ttattttcta atatttatta ataatatagc aaacaataag ataagatttt
      121 tgaaaggcaa aaatgagatt atttatagct gaaaaacccg aacttggtag agcaattgca
      181 gaaggactag atggcaatta taaaagcgga gaaggatata tacaaaaagg tgataatatt
      241 gttacttggg cttttgggca tattctagag cttgcgaaac ctgaagaata tgatgaaaaa
      301 tataagttat ggaaacttga agacttacca ctacccatta aagaatttaa atacttaccc
      361 aaaaaagaaa gtaaaaaaca attaaaaatt atttgcgatt taatccatag cgacaagatt
      421 acttctattg taaattgtgg ggatgcggat gatgagggtc aaattcttgt tgatgaaatt
      481 attcaatact ccaaaacttc taaacctgta tttagggttt taatcaatga tttaacacca
      541 aaagcagtaa aagaagaaat agcaaaaatt aagccaaatg cagattttaa aggaatgagc
      601 gaaagaggtt ttgcaagaag tcaagcagac tggatagttg ggataaatct tactagggct
      661 tacaccataa tggcacgaaa aaatggatat gagggtgttt taagcgtagg tagagttcaa
      721 acacctattt tgtctcttat agttaataga gataaagaat ttgaaaattt taaaagtata
      781 gattattatt ccttgctagg tgattttaat atcaacaata atactattaa agcaagattg
      841 aaaacagaag ataaaatttt agatgaaaat ttagctaaag agatcaaaga atcttgtgaa
      901 aaccaaaatg caaaaattaa tttaaaaata gaaaacaaaa aagaatatcc accgctacct
      961 tataacctac ttgttttaca agctgaatgt gcaaaacttt ttggttttag ccctgataaa
     1021 acattagaaa tcactcaaaa tttaagagaa aaacataagg ctataactta taatagatca
     1081 gattgtcaat atttacctga aacaatgttt gaacaagcac caaatatttt aaatattata
     1141 aaggaaaatt taaattctaa tgatgaaatt caagctctca ttgctagcag tgatttaaca
     1201 ataaaaagca aggcttttaa cgatgctaac atttcagcac actatggaat aatccctacc
     1261 caaaataaaa tttcatcgca attaactcaa gatgaattag tcgtttacaa tctaatcgct
     1321 aaaagattta ttatccaatt ctttcatccg agagaatatc aaactaatac aattaattta
     1381 gaagtaaatc aaagaatttt taccgctact caaaacaaga caacaaaaag tggttttaga
     1441 agtctttggc aaaatgtaga tagcgaagaa gaacaagaaa ataatgagaa tgatataaac
     1501 gatttatcta tcttaaaaaa tggtgatatt gcaaaatgct ctttgataca aattgaaaaa
     1561 aagcaaacaa agccacgccc ttactacact atgacaacgc tacttaaaga tttaaatagt
     1621 gtcgcaaaat atgtgtctga tgaaagaatt aaaaaattgc taatggaaaa agataaagac
     1681 aaaaagggtg aaagtggtgg cataggaaca cctgcaacaa gatctaatca tataaaaaca
     1741 ttaattgaaa gagagtatat agaagtaagt aaagataaaa aacaaattat caaatccact
     1801 aaaaaaggta gagatttaat taaactttct ccaaaatcac ttattactcc tgacatgaca
     1861 gcattgtggt ttgagcaaca aaaaatgata gaaatatcag aattaagaag agaacaattc
     1921 ttagaagaaa tcacaaaaga agtaattagc gaaattcaaa gaattgataa aaatcaagag
     1981 tttaaaatac tagataatga aaacaaacca aaaattcaat gtccgcaatg caataaagga
     2041 tttttaacca aacgaaaagg gaaatatgga aacttttggg gttgtagcga atacatggaa
     2101 ggttgcaaag ccatttatcc tgataacaaa ggcacaccaa actttgaaac aaaacaagca
     2161 agcaacgata ctactcataa atgtccgcaa tgcaataaag gatttttaca aagaataaaa
     2221 agtaaaaatg gtaatagttg gtggtggggt tgtagtgaat ttaaacaagg ttgcaaggct
     2281 atgtattatg acaataataa tggaaaacct aaaataataa atgtataaca ttaataaata
     2341 ttaatttatt ttaattaatt taagttaatt ttaataaata atattttata ataattcaaa
     2401 taaattagaa acaaggttgt ccgagtttaa tcagaataaa aggagaaaat tatgaataac
     2461 aaaagaaaag ttagggaatt tctgtcttat acggagaaat atctgtctta tgtattattt
     2521 atttgtatag gttcttgttt cgttgcttta atactaagtg cgagcattga tagtgatttt
     2581 tactcacttt ttattatttt agctttagga actacgatca gtcctcttat ttgtatcggg
     2641 ttggttaaat taatagaaaa attaataaaa ataataaaaa aataaaaaca atgaaaattg
     2701 cataaaaaat agggtgagaa caataatgct tgattatgaa aaatttcaaa caatgagtaa
     2761 agaagaatat tttaaaaaat ataatgtcgg aattaggttt ttgtttgggt gcgatatcaa
     2821 tcaaaaagat gaaattgaaa tgataagcct tagggttttt ttgccaaaga agtattttca
     2881 agaatacaaa aacattgata tttttaaaac aatggactta tttaaaaaaa caccattatt
     2941 taaagaatta atagagcaaa gcattaagat tgattttgaa aaaagagaat ttgtaatgcc
     3001 tgattttttt attaagcacg atatagaaat cattccttat tttacgcaag gtggcgaaaa
     3061 agaagaagaa ttaagcaaag agaaattttt tgaactttta aaacaaaaca agattaaaga
     3121 attaaactat ttatgctttt tgttttttgg cttgttttgt gaagaagaat atgagtattt
     3181 ttgcaaagta aaggagtaaa aaatgatttc agtaacgctt ttattttttc tttttggact
     3241 aaacaaactt ttgtttaatg ctaaaaatac aatatacaaa ctattaagtt acataaaaat
     3301 tcacgcgatt tttattaatt taagaactct acttttttta atattggtat ttaatgcgga
     3361 tctatcttat atgggaacag ttttatttct agttgattta atgacagcta tatctatatt
     3421 ttttgcttat gctcaattag cttatggttt ctcaattaaa gattgtatgt tttatcttgt
     3481 gtgtggaaaa atagataaag aatggttaaa ggagatacaa aaatgactga agaaaaatta
     3541 attaaaaaag aaatattttc ttatacaatt tttatagcaa ttatcgcttt aatttgcatt
     3601 tttaaaaatg aaatttggga atttgtaaaa tttatttttt ctaatttaga tttcatatgt
     3661 ggtaattttg caaattttgt aagcgaagat aatataatat tttttccagt tacaactctt
     3721 ttaatagtat ttactatagc tatttgtgct gtttggggat tatctaatgt tttatctctc
     3781 tcattattta taatgcctat atttgtcgca gttttttata tttttaatat tgatataagt
     3841 ttaaaaaacc tttatagctc ttattttata tttttaatca ttattaatgg tcttttatgg
     3901 agtgcaaatc aaagatgaaa aaaattacaa tagtagcata cgcaatatgt tttttatcag
     3961 gcttatggtt tttatttagt gctattaaag agcattttgg cattttatct tttattcttg
     4021 gaattgcact tatttatttt ggtgttatta atataaaaag aattttgaat gattctaacg
     4081 agaataaaaa tagcaaaaga attaaaagaa aaactgaaag agaaagagaa gagctaatct
     4141 tgaaaaagat aggagagtaa taaaatgcta gagatagata ataataaaga atttaaaatc
     4201 ttaagactaa acaaacaaga aattttaaaa attggaggtt atggcatttg cgacagttgt
     4261 aataaagctt taagcaatga tggatttatg atctgtgttt tatttagttg ctattgcgaa
     4321 aaatgctacc aaaaatggta taaagttgcg attaatcata aagaagatag agaaattgaa
     4381 aaagatgttt atgaaaatat taaatcgaaa ataactaata tttattttta gttcttatta
     4441 ataaatatta gtatataata ttatacaaaa atataaaaaa ggttttttat gataatatct
     4501 gttgtaaata aaaaaggtgg tgttggaaaa actccttttg ctttttcaat tgctaaagat
     4561 ttagaatatt ttttacaaag caatgataat tctattatag aaaagattta tcctgaaaaa
     4621 gcaaaaattt taccaactcc aaaaaaaata gataattgcg tttatgattt tggtggtttt
     4681 gtagaaaaag gggtattaga tattattaaa gaaagtaata agattattat tccttgcacg
     4741 agtaattaca attctttact tagaacattg gaaactttaa atgaaatagg taatgatgat
     4801 agagtttgta tcttggttac agattataga gatgagaaag agaaaaggca aatttgtgaa
     4861 actcttgaaa gcaattttac agatttaaat ctctttttct ttaaattttc aaagataatt
     4921 gaaaattcta tgagtagtgg agcttctttt actgaacttt ataatgaaaa caatctttca
     4981 agattaagtt atacaaattt tttcaatgag tatcaaagac ttttagattt tattagaaag
     5041 gataaataat aatggaaaaa aaacccttta caatagcaga agctttaaac tctgaaacaa
     5101 gctctcaaaa gacttttaag aaagctgata aaaaatcggc tggaagaaaa actatagatc
     5161 aaaaactaag aagagacaat ttagtagttt gcagacttaa tgaacaagaa atggaaattt
     5221 tgaaaaaatt aatggattta gatttagtaa gtgaatatgg tacttatata agaaaattaa
     5281 tcttaaaaga ggcacgagct ttaaatatta atagttaaaa atgttaaaat atccttgcaa
     5341 aaaacaaaaa ttacaaggat acaaatgagt aaaaaaacaa aaagacaaat tgaagatgaa
     5401 aaagattatg gcggtcgaag tttatttgat ctaatcgaat tagaattttc acaaggagaa
     5461 gaaaatgagc aacagaacag agaattatcc gaacatagag aagttacaga caatattgaa
     5521 cgaactagca tttcatcaaa tacaccaagc gtggatagac aagaaaattc cgcaatacag
     5581 tttgataata ctagagagat gggcagagtt ttatccgaac acaatcaaga atctaggaat
     5641 gtcagatctc atgacactag cattaccaca agctcaaatg gaattagcaa ttttggagag
     5701 caaagaagca aacaagaaga gagatcaggg gctaacagat atggagatac tagcggaaga
     5761 acagataaat ctcaatcaat acatagcaat agaaccccaa atttattctc ctttatttca
     5821 agaaatgatg atgaaagaca aggaacagat acaagaagaa acaatcaaca atcagtattg
     5881 gaaactgcaa caagaaatga tggatatgaa agaagaagcc tcaaatctgg acaaaaatta
     5941 gattttgtaa gcgatgatga aatctatcta ggttctttaa aagatagatt tcaaaaaaac
     6001 ctccaagcca ttaaactttc aaaaactatt gaacaagaaa atcgctacgc taccaaacaa
     6061 gaacaagaaa ttctaaataa attttcagga tggggcggta ttcctcaagc ttttgatcat
     6121 cagaataaag aatgggaaaa agaatttaaa gaacttatta gcacacttga ttatgcagaa
     6181 tatgaaaagg caaaaacttc aactttagat gctttttaca ctccaaaaat tattatcgat
     6241 acaatttatc aagggcttaa tcagttagga tttaataatg atggtcacac caaagaaata
     6301 tttgagccaa gtgcaggtat aggctctttt ttgtcttatg caaaaaatta tagcgataaa
     6361 tatcatttta cttgcgtaga gcttgatact ataagtgcaa atatattaaa gcatttacac
     6421 ccaaatcaaa caatttataa taaagcattt cagcaccatt tatttgataa gccatacgat
     6481 gcttttatag gtaatccacc ttttggtcaa aaaaagattt tagatttaaa tgatactaca
     6541 cttaataaaa caagtgtgca taattatttt atcggtaacg caattaaaaa tttaaaagaa
     6601 gatggaattg ctgcttttgt agtatcaagt tattttttag attctaaaaa tagcacaata
     6661 agaaattata tagccgaaca agcaacattt ttaggtgctg taagattgcc aaataatgct
     6721 tttaaaaaac gagctaatac agaagttact accgatatta tcttttttaa aaaaggtaaa
     6781 gatttaaata tagataaatc ttggctggaa agcgtagaat actatgacga tcgttttgat
     6841 gaagctgaaa aaagaggtat gcaccctgat gtttttaatg actttagaat aaatgagtat
     6901 tttaaaaata atccacaaaa tatcttagga aaaatgaata ttaaaagctc tcaatatggt
     6961 tatagtttag aatgcttgga tgatggaaga gatttaaaaa tcgctttaga aaattttaca
     7021 aaaaccttac ctaaaaacat ttataaatat caagaaacaa aaatcaagct atcttattac
     7081 aggattgata gagaatcgcc tgaatacgaa aaatatagca aaactctaag taagttaaaa
     7141 gatggaaatt attttgaata caataatgaa atctacatga aaatcagaag cgatgatgag
     7201 ttagtctttt caaaacctgt tttaaatgaa cacgatacaa gaagaattaa aaaactcatt
     7261 gctcttagag atcaatttaa cactcttatt gaatatgaaa aaaatgaatc tagcgatctt
     7321 ttagtagaaa atcaaagaaa atatctaaac aagctttatg atgaatttgt agccaaagaa
     7381 ggatatttaa atagagatgc aaataaaaaa gcctttagag aagatgtgga agcaaacaaa
     7441 attttggcac tagaaaaaaa ttatagcagt ggtatttcaa aaagtgtagc tttaaaagaa
     7501 ggtatagatc ctattgcacc aagtgcaaca aaagcagata tttttttcaa aagaactata
     7561 aatgcacaaa aagaaattaa aatctcgact ccaaaagaag cattaattgc tagtatcaat
     7621 gaatatggga gaattgattt aaaattttta gaaacgaatt taaatcagcc tttagaagaa
     7681 acccttaaat ctttagagca agatagatta atctttaaag atcacaaaaa tcctgcaaat
     7741 tatgttttgg ctgaaaaata tctttctggc aatgttaaag caaagcacaa agaagtaaaa
     7801 aaattagtag aagatggctt taatgaattt gttaataatt tagaaagctt agaacaagtc
     7861 ttgcctaaag atttaaaagc ggttgatatt tcaataagct tagggacaac atggatacct
     7921 ataaaatatt acaaacaatt tatagaagaa accttacaaa ttactcctaa agattatgat
     7981 ttatttttaa tggaaaaaac aggcgaatgg agtcttaaag gttttggtca ttctttaagt
     8041 ccttacatca gatcacaata tgctaccgag aaaataggtt gttttgattt atttgagcat
     8101 ggattattaa gaaagcctat tcgcatttat gataaaaaac tagatccatc aggaaaagaa
     8161 atcagagaat taaatcctaa agaaactgca atcgctaatt ctaaattaga aaatttaaaa
     8221 aatgaattta tagaatggat ttataaagac tatgatagac gcacagattt ggaaaatatc
     8281 tataatgaaa ggtttaatac aaatatagaa ccacaataca atggagagca tttagaactt
     8341 ccaaatttca atgccaatat caaactcaaa aaacaccaaa aaaatgctat atatagggct
     8401 attcaagaaa atagtattat ttttgatcat caagtaggcg ctggaaaaac tttagtggca
     8461 atttgctctg tgatggagca aaaaagaatg gggcttttaa ataaaccctt aattgtagtc
     8521 cctaatcatt tagcaagaca atggaatgat gagttttatc acgcctatac aaatgcaaac
     8581 attttagttg ctacaaatga tgatttaaaa aaagataata gagaaaagtt tttttccaaa
     8641 attgcaacaa ataattttga tgccatcatt atgacacact cgcaatttaa attaatcccc
     8701 gcaccttatg aagttatcaa aaaacaatat gaagaagata ttaatatctt agaacaaaca
     8761 ttagaaaaaa aacaaaacga tgataatgtt atgcgatatt ctgtaaaaga cttagaaaaa
     8821 cgcattgaaa attttaaggt gaaattgagt gatttgcaaa ctacacataa aaaatctaaa
     8881 gcaatagatt tttcagaatt aggaattgat gcattaatta ttgatgaagc acatgagttt
     8941 aaaaatttac tcattacaac ttcaatgggt gatataagtg gtcttggcaa tttaaaaggc
     9001 tcacaaaaag cttatgatct ttattctaaa acacaatata ttcacgagca aaataaaaaa
     9061 ctctattttt taacaggaac gcctataagc aattcaatta cagaacttta tactttgcaa
     9121 agatacatac aaccaaatat cttaaaagaa aaagggatac aagcttttga ttcttgggct
     9181 tctacttttg gagaagttac aaacgcttgg gagcttgata gttctggaat aaattataaa
     9241 atcgttgcaa gatttaacaa attcaaaaat gttcctgaac tttctaccat gtataaaagc
     9301 gtggctgata ttgtaacaaa taatgatatt atgaaatatc aaaaagattt cgtgccaaag
     9361 ctttataatg ataaacctat taatatcgtt gctcctagaa gtgaagaaat agcagaattt
     9421 ataggcattc aagatgaaaa tggaagatgg aatgaaggct ctattgtgtg gagaatggag
     9481 catcaacaag atgatattac tagaaataac ttacttgctt gtaccacaga tgctagaaaa
     9541 gctggacttg attttagact tattaatcca cattgtgatg attatgcaaa ttctaaaatt
     9601 aataagctta ttgaaaatgt ttttaatgag tataatgctt ggaatgatga taaaggcaca
     9661 caattaatat tttgtgattt atccactcca aaacaacact cacaaaaagt tgctctaaat
     9721 ggcaatattg ctacaccaaa tttaaataaa gaagaatttg tcaatattaa tgaaacaata
     9781 gaacaaacag aagaagagaa tagcaaaagc cttgatgaac tcttagcaga acaagcaaaa
     9841 tttgatgtat atactgatat cttaaaaaaa cttgtcgcaa aaggtattcc acaaaatgaa
     9901 attcgtttca ttcacgatgc aaaaacagac ttacaaaaag gacagctttt tgcagatatg
     9961 aactcaggaa aagctagaat tttaattgga tcaacgcaaa aaatgggtgc tggaacaaat
    10021 gtgcaaaaaa gaattgtagc cttacaccat ttagattgcc cttggcgtcc gagcgattta
    10081 gaacaaagaa gcggtagggt tataagacaa ggcaatgaac tctttatgag agatccacaa
    10141 aactttagag taaaagagtt tagatatgca actgaaagaa cctatgatgc tagaatgtgg
    10201 caagtcattg aaagcaaagc aagatccata gaacaattta gaaaagctgg tgctgatgta
    10261 agaaccttag aagatgttac aagtggtgca gctgatgctg cagaaatgaa agcagaagca
    10321 acaggcaatc cactcatttt actacaggtg caattaaata gtgatctaag acaagaagaa
    10381 atgctttata gtggttataa aagacaaata cacaataatg aagaaagtct tataactaat
    10441 ctttcaaaga ttgaactact aaaaaaagat atagctaaaa tggaaatttt aaattcaatc
    10501 atcaaagaaa acaatagcga gcattttcaa ggaaagtatt acattaatga tgatgaaaaa
    10561 gatttcattg tctttaaaaa tgatacgagt gatctaaaca aaagcagaca agcagaactt
    10621 gaaagaaatt ttgaaaagat tgtcaaaaca atagctgatg actatcaaaa agaatataag
    10681 gttttagagt ttaaaggact gcttataagc ggagaaagaa cagatttaaa cactcttaat
    10741 ttttatgtga gtactactga tggtaaaaca ataatcgagc ctgaaaattt gatttataaa
    10801 agagatgaaa aaactttttt taaattggaa agttatgtaa attttggtgg ttttgtaaag
    10861 agattaaaca atttttataa tgacttagaa aaatttactc aactcaataa aaataagata
    10921 gaaaatcttg aaaaagaaat tgtggagcta aaaagcatta caggagataa cactccaaaa
    10981 tacaaaagaa aggattattt agaggcatta agagaagaca atcgcattat catggatgaa
    11041 atagaaaaaa tgagtaagca aaaaaactac aaaagtgatt ttgtgccaaa atctccaaag
    11101 attttggaag atttaaataa acaaagcaaa actataaaag aaaatgaaat tggctattag
    11161 taattactta aagtttttta tttaatagcg ttcatgacaa accttaacta taatttctaa
    11221 gtctagttaa ttagacttag aatattaaaa attaattaat accatttctt tctattcttc
    11281 tattttctct atcttttaaa gtagatttaa taatatttat acatttttca aaaaattcac
    11341 catatctttc tttatcatct tctctcaaat caaacaaatc aaaaagcatg taagatgttt
    11401 gtcctcgatc taaaatattt tttggataat actttaaaga taaaagtttt ctgtaatcat
    11461 cttcattaaa ttctaagcaa gaaattttat acttgaattt ttgataaaat tcatataaat
    11521 cacaaagatc gctacattct ctagcttcca ttataaaatt acttcctata caaaaataag
    11581 tttgatataa accaaattca ttatttcgat ttattacaat tattctagta tgatcaagat
    11641 tatttttaga agtgacaata taaattctat caaattcttc agcctctttt ataaattggg
    11701 agttaaaatt tgatttaata agatcacttg caaatggaga gccttcccct gtcaatagcc
    11761 aattatgatt gattttaaat cttaatgcaa atttttctaa aaaatcaaaa tctggataca
    11821 ttttaaaatt taaaatttga ttgatttttg cataattact ttcacccatt gctcttgaac
    11881 aagttatttc acttaatttt aactcattaa agatatgatt aatcctatta attaaatcat
    11941 tatgatcttt cgaaaaaaca ttattcatca tgttttctcc taaattatat gagtttagtg
    12001 aagcaaatcc atcctgaaaa ttcttaatcg tacttctaag tttataattt tcaagcatta
    12061 attctaaggc tactttagct gttttggata ttctcgaact atcactccaa gaatctattg
    12121 tggtttttga taatcctaat ttttcagcca attctgtcct actcatcctc aaagtgttac
    12181 aaacttcttt gaacataaaa aaactccttt tggaaaataa tttttgaaat taaagcataa
    12241 taaaataaaa aagtcaagta tatacatatt acataatatt ttatattttt tatgtaatat
    12301 aatctaatat taattctctt ataaattatc catctctttt aatctcatta ttcctaacac
    12361 ttgtccatcg caagatatta tcggatcgtc ctcgctctcc ttgctgtaac tgattgagtg
    12421 cattgatgtg caaaagcatt tgagttcgtt ttgtgttatg aaccataggc tgtttggaca
    12481 atattcgcat agagtttctt tcttgggcag tttctcttcg gatagttgat ttattaccga
    12541 gctcttgtaa gactctctgt ctatattgtt ttgtataatc tctctcatta ttcactcctt
    12601 tatcttgtat aattttatat ttttttgttg ttttggcttt gttgatctgt tttaaatctt
    12661 tctctctacc tattactgat acttcccaaa taggtttttt aagtgtttta acaacttctt
    12721 gccacttgtt attaattttt gcctttcttt ttatctcata ttcttcttgc cctactattt
    12781 taaatcttgc atattcaccc cttaaaactt tattttctct cacaatcctt tctaaatctt
    12841 gtccccaaat tgtagttatt ccttttttgg ttttatagct cacataataa ctttttttgg
    12901 catttttatc tgtgctaaat tgatagtttg cttctccgaa atccataact tgataatagt
    12961 gcatttttat ttttggtgct tgattaatct cattatttgc atttaattta actgaaaatt
    13021 cttgatttat ttctacttct ctttgctttt tatttgtagc ctttgcttca actcctaact
    13081 catttaatgc ttttgcaaat tctgctctta aatttgctaa atctgctttt tttggattaa
    13141 ttcttttgcc atttttatcc gcaactttca agcaaacatg gcaatgcgga ttatccgtat
    13201 cattatgaaa agcaactaca aaaaaattat ttggatacat tctttttaaa gtagtaatta
    13261 cagcttgttg taatttttct tttggtgttg tagaatgttc tttcatggaa aaaaccatat
    13321 taatggtatg tcttttttct ttagcacctt ccttatataa tggaatagga gatccttcat
    13381 ttttgaaaat tcttttaact tctaaaatct catcttctcc cgcatatcta tcaaaatcgt
    13441 ttgtaattaa ttctacattt ccatcacgag aaatataatc aagatgtttt gaaagtgctt
    13501 gagaattttt agaacctgaa gtaattttta caacgacttc tgtatttttt ctaaacatat
    13561 ttttactaac aagcttacct gtttttatat ctttggcgta tttatctcta tttttattga
    13621 tgtaatttag tggtagcttt gaagcatttt ctattttagt aaaaactttt ttagcaatta
    13681 tttcatcatc aaatattctt atactacgcg acattaaatt ctttcattat ttttttctat
    13741 tatagcccca agctgatcgg ataatatatc aattttatct ctaatattat ccatagtttt
    13801 atttaaatta ttttcattaa ttttgacaga atttccactt ctaagaatct tcaataattg
    13861 atatatattt ttacctattg cattgatttc tgttcttgtt tttataaact tatctatttc
    13921 tatattagta aaaagttttt cattttttat ggagtttaat agcaaaaatt ttgcttgttt
    13981 tgtaatactt gaaaatcctg tatttttaga aatttctttt aaaatattta cttcattttc
    14041 tgtaagtttt agtttgatta ttttattttc atcacttgta taaaatttat ttttagatat
    14101 ctcatcattg attttattct tctcatctgt atcacaagaa ttaaactttt ttaataaaat
    14161 agatattatt ttactatatg atgcatttgt ttctgatttt atatattcta aaattatttt
    14221 atcatctttg ctaactttta tgacgcaatt attgttttta ttcatttaca cttccttaat
    14281 gagcctcgca gagtttttgc cttttatttt ttaaaaaggt aactttttag gaaataaaag
    14341 gctatcctgc aattattaaa ttatttcgat taatcgctat tctacattat taagctttat
    14401 aaaatattaa gactactttg taataataca tttacataaa tattataaag gagatgttat
    14461 gtttaaagaa agcaaattga tagaagaatt aaagcgtgag tatgatgaaa aattaaaaaa
    14521 attacgccaa aaagaaaaag aaaataaaga gcgtatatat aaaaaatttt catcagcact
    14581 atttaaagat tttgaaataa atgaagattt taaaaatgaa tttaatttat tggtagaaaa
    14641 gtttgattgt aaaaacacta aaaatatatt agataaaata aataacttat atgattttaa
    14701 tcatagaaac gataaaatag atactgcaaa aaaacaataa aacaaaaatt tatcatagga
    14761 gaataaaaat ggaaaaagat tacaaaataa aagtaacaga tgtaagtgaa cttaatgagc
    14821 aatataaaga agctatacaa gaaggaactt atgaaggtga agatgtaaat aaatttttta
    14881 atacaataaa aacttttgat gttgcagaaa gcttactaaa aaaagatttt tcaaatcaat
    14941 atattaaatt tgatatcatt actgataaag aaaaaatacc attaaatata agacttggag
    15001 ataaaaattt tcaaaaaggt attgaacatt taattaatat tggtagttcc aaattaatta
    15061 aagaaaatat aaaccctgaa ataaaaaaag atcttaataa tcgacttgga atttataaac
    15121 caaaaatata tgatgaaatg ttagatggaa cttttaaagc aataaaaaat ttatcagaag
    15181 tagccaataa agatgttggt gtaatgatat tagaatttgc aaattcttat tctgaaacta
    15241 gagaaaaatt tgaaaaaaag caaattaata aaagttcatt ttttaaagaa aaaatgaatg
    15301 aatttttcaa aaaaaaacta aataaaattt taccagatag agaaattagc aacgaaaaaa
    15361 catattctcg atcaaggtaa aaaatgaata atacaataaa ttttaatgaa ctattttctc
    15421 aaataagatt atcttcttat aataatgata ttgtcaagca ctatgataat cttaagtgtg
    15481 ttggaaaaat tactccaaaa cttgctacat tagaaattat tcttagaaat aaattagata
    15541 ataaattatc agagaaagat aatgattgga taaaaaactc taatgatgaa aagattaaaa
    15601 aatccaaaga agaaattgag catagggaaa aaaatagaat tttatctcat catcaatatc
    15661 tttctcgtat aagtttagga actatcattc atctcatcaa agaaaataaa ttacaaaact
    15721 ctataatgga tttaaaaaat atcaatttta gaaactacaa tcaatacaat agaaatttct
    15781 tttttgaaaa tggcataaaa ttacgcttta gaaatacgca taaagttgat attgttctta
    15841 gcttattaca aaatctaaga aatagaagtt atcattggga aaatatttta aaaacaacag
    15901 aaaaaaatgg caaacattac ccaagattaa caacaaagat taaaaacaca catataggag
    15961 tagatccgca aaaaatagat tttttcttaa gtgatttaat taaaactttt aacgaaaaaa
    16021 ttttggaata ttgttaagat taaaaaatgg gacacaagga gtccctcgaa tttaaaaggt
    16081 gggctactag gaagcccttt gaatttcatt gtaattatac tgacaaaaca ttaaacaaag
    16141 ttaaaaggat atacaatgcc tcaaaaaaga atttatcttt atgttccatt taaagacaaa
    16201 gaaaaagcaa aatcattagg ggcaatgtgg gatgataaag aaaaaaaatg gtttgctcca
    16261 aaaaccttag ataaaaatat tttctcacaa tggctttatc cacaccaaaa taaagaattt
    16321 tcatttgatg aaaatgaagt cttaacagct tttaaatctg ctttagaaaa tcaaggttta
    16381 attattgaag gcttacctat catggatggt aaaattcata gagtaaaaac tactaatgat
    16441 aaaggtagag aattaagcgg tgcctataac ggttttttag acgattatcc tgcagggttt
    16501 atgcaaaatt ttaaaacagg cattaaagaa aattggaaaa tgcccataga aaaaaatcaa
    16561 agcaataata taaaaaattc tcaaaaatta catgagcaaa taaaaaaaga tcaagagctt
    16621 agagaaaaag agattttaac tttgcaagaa aaaaccgctt taaaacttga aaatgagtat
    16681 aataatgcaa gatgggctaa ttccaatcac gcttatttaa agaaaaaagg ctttgatgaa
    16741 aacttttatc ttaaacaaga caacaaaggt tctttactta ttcctttaaa agatgagaat
    16801 ggaaaattat ggtctgtgca aagaatattt ccaaatggag ataagatcat aggagtcatt
    16861 aaaactcaag aagaaaaaga tcaaggcgta gaatatcttg caaaaaaaca aggttgcttt
    16921 catataatag gtgcaaaaag cttggaacat tgcaaagaat ttattataac agaaggcttt
    16981 gctactgctg caactatata caaggcactt aataagcctg tgataatggg tgttgatgct
    17041 ggaaatttat cgaaaattgt tgaaacccta aaaaacaaat ttcaaaacac tcctattacc
    17101 ttaatagccg ataatgataa aaaaagagaa ttgaaaggtc tttctaatgt cggagtggaa
    17161 actgcaaaag aaattcaaca aaaattttca gatattaaag ttattattcc aaaaatcagc
    17221 aatcaagaag cagaacaagg aataagtgat ttcaatgata tttttttaaa taaagggatt
    17281 gatgaagtca aaaaacaatt aaatttcatt gattttcata ataagcttaa atcttttaaa
    17341 tctatggaaa aaacacaacc tgaaaaagag ataactagat aataatagtt actctttgta
    17401 atcataatat ataaaaaata ttttttatat attattagtt aataatagtg tattataatt
    17461 actataaata tacaaaaaaa ggattaaaaa tgaaaaatac aatcaaacta gctttattag
    17521 gtgcagttat tactggtgtt ttttctgctt gctcttcaga gccaaaaaca gtgcaatatt
    17581 acgaagatcc aaaaaatgct acagaattag aagctaaaat caaagaatgt gataaaaatg
    17641 ctaattctgc gaaaactgac acagaatgtg caaatgctta taaggcaaac tattctaagt
    17701 catttcaaaa gccacgagaa agtgctatgg aattttttaa gaacaacaaa tgaatttaga
    17761 tctt
//
LOCUS       DARGEX010000026        17675 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.026, whole genome shotgun sequence.
ACCESSION   DARGEX010000026 DARGEX010000000
VERSION     DARGEX010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17675
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.026"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            123..851
                     /locus_tag="SF010_000687"
     CDS             123..851
                     /locus_tag="SF010_000687"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG8229639.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            853..2190
                     /locus_tag="SF010_000688"
     CDS             853..2190
                     /locus_tag="SF010_000688"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG8229640.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(2193..3578)
                     /gene="fliI"
                     /locus_tag="SF010_000689"
     CDS             complement(2193..3578)
                     /gene="fliI"
                     /locus_tag="SF010_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG8229641.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(3578..4150)
                     /gene="folE"
                     /locus_tag="SF010_000690"
     CDS             complement(3578..4150)
                     /gene="folE"
                     /locus_tag="SF010_000690"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG8229642.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLASGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            4294..5628
                     /locus_tag="SF010_000691"
     CDS             4294..5628
                     /locus_tag="SF010_000691"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG8229643.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            5628..6212
                     /gene="clpP"
                     /locus_tag="SF010_000692"
     CDS             5628..6212
                     /gene="clpP"
                     /locus_tag="SF010_000692"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG8229644.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            6248..6775
                     /locus_tag="SF010_000693"
     CDS             6248..6775
                     /locus_tag="SF010_000693"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG8229645.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            6772..8277
                     /locus_tag="SF010_000694"
     CDS             6772..8277
                     /locus_tag="SF010_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG8229646.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            8279..8977
                     /locus_tag="SF010_000695"
     CDS             8279..8977
                     /locus_tag="SF010_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG8229647.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            8961..10331
                     /locus_tag="SF010_000696"
     CDS             8961..10331
                     /locus_tag="SF010_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEG8229648.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            10322..10888
                     /gene="purN"
                     /locus_tag="SF010_000697"
     CDS             10322..10888
                     /gene="purN"
                     /locus_tag="SF010_000697"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG8229649.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDSGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            10960..11679
                     /locus_tag="SF010_000698"
     CDS             10960..11679
                     /locus_tag="SF010_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG8229650.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            11672..11881
                     /locus_tag="SF010_000699"
     CDS             11672..11881
                     /locus_tag="SF010_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG8229651.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            11891..13075
                     /locus_tag="SF010_000700"
     CDS             11891..13075
                     /locus_tag="SF010_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG8229652.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDDGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(13089..14447)
                     /locus_tag="SF010_000701"
     CDS             complement(13089..14447)
                     /locus_tag="SF010_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG8229653.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(14546..15751)
                     /locus_tag="SF010_000702"
     CDS             complement(14546..15751)
                     /locus_tag="SF010_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG8229654.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(15797..16543)
                     /locus_tag="SF010_000703"
     CDS             complement(15797..16543)
                     /locus_tag="SF010_000703"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8229655.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYIQEKSSGVDFKQGAEF
                     TSIMMVSEPPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(16545..16955)
                     /locus_tag="SF010_000704"
     CDS             complement(16545..16955)
                     /locus_tag="SF010_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG8229656.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(16942..>17675)
                     /locus_tag="SF010_000705"
     CDS             complement(16942..>17675)
                     /locus_tag="SF010_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8229657.1"
                     /translation="LLLNLNAEVNATDTNLSFDSPKIETEAPKIEFSLSSLYQNADEV
                     VKGVIYILVLFSILAWTVFISKLMQFYFMKKNLDLSIQKIKELKNLNELDQTKDFAGV
                     LSLEIQDELEKSEYKNDHIKERMELRLQNTISKQITASKNGLSLLASIGASAPFIGLF
                     GTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLFYNYLTRKNLK
                     LMHHLDELANFVYILFHRSYFNDKN"
BASE COUNT         6413 a         2555 c         2857 g         5850 t
ORIGIN      
        1 ttaggagaag aagcaaaatt gttagataat ttatataaat taaaaaacca taaagcttaa
       61 ttttattatt taaaatttac aaaataaatg ctaaaatcaa tattttattt tcaaggaaaa
      121 agatgattaa aataggaatt tatggcgcta aaggacgaat gggaaaacag attgaagaat
      181 gtttaaaaag cgaaacacaa gcacaaattt cgatacttta tgataagggt ggaaatttag
      241 gagagctttt tgaaaaaagc gatgtgatta ttgatttttc ttccccaagt ggaactcatg
      301 agcttttaaa ttatgcaaga actataccta aacctttggt aataggtaca acagggcttg
      361 atgagaaaat tttacatttg atgcaaagtg ctagtgaagt gatgccgatt ttttatgcga
      421 ccaatatgtc tttaggtgtt gcggttttaa actatcttgc tagtaaagcc agtcaaatgc
      481 taagaaattt tgatatagaa attttagaaa tgcatcatcg ccataaaaaa gatgcaccaa
      541 gtggtacagc tatgacttta gctcaaagtg tagcaaaagc tagaaattta gaacttgaaa
      601 aagtaagagt aagtggaaga gatggcatta taggtgaaag aagcaaagat gagattgccg
      661 tgatgagttt aaggggtggc gatatagtag gacgtcatac agtaggtttt tatgaagatg
      721 gagaattttt agaacttaat cataccgcta cttcaagggc gacttttgct aaaggtgcga
      781 ttaaaatcgc tatttggctt agtaagcaag aagcaaaaat gtattcaatc aatgattttt
      841 taggaattta aaatgtgtgc agttgtagga gttattaatt caaaaaatgc tagtacttat
      901 gcgtattatg cgctttttgc tatgcaacac cgtgggcaag aggcaagtgg tattagtgtg
      961 agtaatggta aaaatattaa gactattaaa gctaaaggtg aagtgagtca aatttttaat
     1021 cccgataatt taaaaacttt agaaggtgaa atcgctatag ggcataatcg ctattctaca
     1081 gcaggaaatt caagtttaaa cgatgcccaa cccatagcag ccacttcggt tttaggtgat
     1141 attgctttag cgcataatgg aaatttagtc aataaagaag aagtaagatc aagacttatt
     1201 caagatgggg ctatttttca aaccaatatg gacacagaaa atgttgttca tcttatcgca
     1261 agaagtaagc aagaaagtct aaaagataga tttattgaga gcttaaaaga atgtatagga
     1321 gcttattgtt ttgttttagc aagcaaagat aaactttata ttgtaagaga tcctcatggg
     1381 gtgcgtcctt tgtctttagg gcgtttaaaa gatggaggct atatagttgc tagtgaaact
     1441 tgtgcttttg atcttataga ggctgaattt attcgtgatg ttaaaccagg ggaaatgctt
     1501 atttttactc agggaaatga taaatttgaa agcatagaac ttttttctca aactcctaga
     1561 atttgcgctt ttgaatacat ttattttgct agacctgata gcatagtaga aggtaaaagc
     1621 gtgtatgaag tgcgtaaaaa aatgggcgaa gctttagcta aaaaatttgc ttataaagca
     1681 gactttgtcg tgcctgtgcc agatagtgga gtaagtgcag ctataggttt tgctcaatat
     1741 ttacaaatcc ctcttgaaat ggcaatagta agaaatcatt atgtaggaag aacttttata
     1801 gagccaactc aagagcttag aaatttaaaa gtaaaattaa agcttaatcc tatgcgtaaa
     1861 gttttagaag gcaaagaaat tgtagtcatt gatgatagct tggtgcgtgg cactacttct
     1921 aaaaaaataa tttccttact tcgtgctgca ggagcgagta aaatccatct tgccatagct
     1981 tgtcctgaga tcaaatttcc tgatacttat ggtatagata ctccaacttt tgaagaactt
     2041 atcagcgcaa ataaaaatgc tgaagaagtg cgtgaatatg tagaagctga tacgctaagt
     2101 tttttaagca tagaagagct aactcaaagc ataggcgatg aaagaaaata ttctttaatc
     2161 agttttgatg gagattattt tattaaataa ttttatttta aattaggatt aggtaaggtt
     2221 gcacttgcac ttcctacatt tatattttga gttggtggca aaggagtatt tggtgtatca
     2281 atttgactta aaagctctaa agtttgatta aattcgaagc tttcttcagg attttgtcct
     2341 aagaattttt gcataaattc ttttttagaa atagcttcat caagttcttt atcacttcct
     2401 ttctgataag caccgatgcg aagcaatact tcattttctt ttaaaagcga gtttaaacgc
     2461 ttaaattttc ttgcccaaag tttgtgttca ggacttataa tatcgctcat tacccttgaa
     2521 gcggagtttt gtatattaat aggaggataa attccaaagt ctgttaattc acgacttaaa
     2581 acaatgtgtc catctaagat agaacgactt tgatcggcga ttggatcgct catatcatca
     2641 ccatccacta aaacggtaaa aaaggctgtt atagtgcctt taccttcttc tttacccgtt
     2701 ctttccatga gttgaggcaa aagacttaaa acacttggcg gataaccttt ggttgtagga
     2761 ggctccccaa gagctagtcc tatttctctt tgcgccatag caaaacgcgt tacactatcc
     2821 atgataaaaa gtacatcttt accttgttct ttaaaatatt ctgccacact cattgcacaa
     2881 aaagcaccgt atttacgcat caaagcacta tcatcacttg tagcaacaat aatcactgta
     2941 tcatcgagct ttccgcctaa atttttttgt ataaattcag gaatttcacg ccccctttct
     3001 cctatgagag ccactacttt tataggagct ttggaatttt taactatcat tcccataaga
     3061 gtggattttc ctaccccact tcctgcaaaa ataccaagtt tttgtcctac accacaagtt
     3121 aaaagcgcgt ctatggtttt aacacccacg ggaaaaactt cttctataag ccctcttttc
     3181 atggcatcaa taggtgcacg cattataggc atatatttgg ttacttctat agctccttta
     3241 ccatcttttg ggcgcataaa aggatctact actctgccta aaagttcatc gctaacgcct
     3301 atttgcatac ctgcatcact tatgaaagca cgatcgccta ttttgaaacc ttctataaaa
     3361 gaaaaagggc ttaaatagct aaattgttcc ttgatttcta cgaccatagc tagagtgttt
     3421 aaattttcat tttcattgga aactagcttc actatatctc caacccctgt tttaagccca
     3481 cgaatttcta tactcgtagc agaaattttt gtaatctctc caaagatagc acttaaattt
     3541 tctttaccaa gtttggagcg tagtttttca agattcatta aaatcttacc tgtttagcag
     3601 agtttatgag agaaaaaaat tcctctctgg ttttttcatt ttttaagaaa attccacgta
     3661 aagctgaagt tgtagtggtg gaattagctt tttgtattcc acgcatttca acacacatat
     3721 gtcttgcttc tatgactaca cccacacctt ttgcatcaac attttccatt aaagcttgtg
     3781 cgatttgttc agtaagttgt tcttgaattt gaagtcttct tgcaaacact tctacaaggc
     3841 gtggaatttt gcttaaacct actacttttt tattagggat ataggctaca tgagcacgcc
     3901 caaaaaaagg taaaagatga tgttcgcaaa gactataaaa ttctatatca cgcaccaaaa
     3961 ccatttcatt attagagctt tcaaataaag catcatttaa aatgtctttg acattttgcg
     4021 tataaccact agcaagaaat tcataagctt taaaaacacg atttggtgtt ttaataagcc
     4081 cttcacgatt tggattttct cctataattt caagtatggt tttaacacaa tcttcaaatt
     4141 ttttttgcaa atttttctcc aaaaatattt tttatatttt aataataatg taatattgca
     4201 attttatcat aaattacttt aaaattttat gcaagtaata aggaaaaatt tgctatcatt
     4261 gaaggcaaat tttattttat aaggaaaaaa actatggaag taaaggcaaa gcaactagat
     4321 tctgttaatg cgactgctag tgtaaaaatt ccttcaggaa tgatcaaaag tgaagtagaa
     4381 aatttagcaa aaaaagcttc taaaagtgta aaaatggatg ggtttagacc aggaaaagtt
     4441 cctgtaagtg ccgtacttaa aagatatgaa agagagctca ctcaagatgc agaacaaaat
     4501 ctttttaaat ccgctgtaaa tagcgcttta caagaactta aaaaagaaaa taaagagctt
     4561 gtaggtgagc catattttga aaaatttgat cgtaaagatg gagaaattat tgctgaatta
     4621 atactttctt ttaaacctga aatcaaactt gagggttatg aaaaactcat ccctgaatat
     4681 caaactccaa aagtaagtaa aaaagaaatt gatgagaaaa aagatgaact tttaaagcgt
     4741 tttgctactc ctgaagctat aaaaacaaaa agagctttaa aagaaggtga ttttgcaaaa
     4801 tttgattttg aaggttttgt agatgataaa gcttttgaag gtggtaaagc tgaaaattat
     4861 gttttagaaa ttggttctaa gcaatttatt ccaggttttg aagatggtat ggtgggaatg
     4921 aaaataggtg aagaaaaaga tatcaaagta actttcccta aagaatacgg cgcagcgcat
     4981 ttagcgggta aagatgcagt atttaaagta aaactacatg aaattcaaga gcttaaaatt
     5041 ccagaacttg atgatgaaat gcttaaaaaa cttttaccag gagaagaaaa agctagtgtt
     5101 gaagttttag atgaaaaatt aaaagagcaa atcaaaaatg aaaaactttt caaacttgta
     5161 aatgatgaat taaaaggcaa atttgcagat gctttgattg aaaaatataa ttttgattta
     5221 cctaaaggca tagtagaaca agaaactgat atgcagatgc gtgcggcttt taatactttt
     5281 agcgaaaaag aaattgaaga gcttaaagca agtaaagaaa aatatcaaga aaaacgtgat
     5341 tcttttaaag aagaagcaca aaaaagtgta aaacttactt ttatcattga tgaacttgca
     5401 aaattgcgta agattgaagt aaatgatcaa gaattgattc aagcgattta ttttgaagca
     5461 tatcgctatg gtatgaatcc aaaagagcat ttagaaaact ataaaaaaca aggagctttg
     5521 cctgctgtga aaatggcttt aattgaagaa aaacttttta atgatatttt tataccaaaa
     5581 acagaaaaat cggaaaaagt gagcaaaaaa gagaaagaag ataaataatg tttattcctt
     5641 atgttattga aaaatctagt cgtggtgaaa gaagttatga catttattca cgccttttaa
     5701 aagatagaat tattatgcta agtggtgaaa ttcatgatga acttgccgct tctatcgtag
     5761 cacaacttct ttttttagaa gctgaagatc ctacaaaaga tatttatctt tatatcaatt
     5821 ctccaggtgg tgtaattaca agtggtttta gtatttatga tactatgaac tatatcaaac
     5881 ctgatgtttg tacgatttgc ataggacaag ctgcttctat gggagcattt ttgcttagtt
     5941 gtggcgcaga aggaaaacgt tttgctttgc ctaattcacg cattatgatt catcaacctt
     6001 taggtggagc tagaggtcaa gccacagata ttgaaattca agccaaagaa attttaagac
     6061 tcaaaactat acttaatgat attttggcaa aaaatactaa gcaaaaagtt gcaaaaatag
     6121 caaaagatac agaaagagat tttttcatgt cagcacaaga agctaaagaa tatgggctga
     6181 ttgataaggt tttggaaaaa agttttaaat gatttctttg gagatcattt aaaacaaagg
     6241 ttttttaatg gttagaaaaa ttatcaccta tcccaatcct agactttttt taaactctga
     6301 aattgtaaat aaatttgata cagaacttca caccttgctt gatgatatgt atgaaactat
     6361 gatagcaagt aatggagtag gtttagcagc tattcaagtg gatattcctt tgcgtgtttt
     6421 acttgtaaat atttttgatg aaaacgatga acaaaaaaaa gaagatttgc tagagattat
     6481 caatcctgaa attattcctt tagatgaaga aatgatcact tgcacagaag ggtgtttgag
     6541 tgtgccagat ttttttgaag aagtgaaacg ctataatcat atcttgctta aatatcaaga
     6601 tcgctttgga gaatttaaag aacttgaagc aaaaggtttt ttagctgtgg ctattcaaca
     6661 cgaaaatgat catttaaatg gacatttatt tatagaaaaa atttcctttg ctaagcgtca
     6721 aaaattcgat aaagaattta agaaaaagaa gaaaaatcat aaaaaagaga aatgaaaaaa
     6781 ctaaagtgca taagctttca tgaaggctta gacattatag aggtagaatc cacttttaca
     6841 agaggtttgc caaatttaag catagtaggg cttgcaagta cagcgattaa ggaaagtgtc
     6901 gaacgcatca aagccacact tttaagttgt gattttgctt ttcctgctaa aaaaatcact
     6961 atcaatctta gtccttcagg catcccaaaa aagggatcac attttgattt ggctatcgct
     7021 ttattaatcc ttttgcaaaa tgaagaatta gatgactttt ttgtagtagg agaattagga
     7081 cttgatggaa gtattaaaag cacaaatgag cttttttctt tgcttttgtt tctctctgct
     7141 aaaattgaaa aagctaaaat cgttgttcca aaaagtatag cacaaaaagc ttccatgata
     7201 ccaaatttag aggtttatgg acttgaaaat ttaaatgaag caatagagtt ttttaaagaa
     7261 aaaaattatg aaaattttcg tttttctcac aatcatcctt tattcgcaag tcctttacaa
     7321 atagaaaatg aaattttttt acaaaatatg gattttaaac ttgattttaa agatatcaaa
     7381 gggcaggaaa aagctaaaag agcttgtatg atagctgctt taggtatgca taatatctta
     7441 tttgaaggaa gtccaggaag tggtaaaagt atgtgtgcta aacgccttgt ttatatcatg
     7501 cctcctcaaa gtttaagtga aattttaatg caaaatgctt atatgtcttt agattcaaaa
     7561 gattgtgaat ttactaaaat tcgtgctttt cgtcatcctc atcatacttc tacaagagca
     7621 agtatttttg gcggaggaac aaaaaatgct agaattggag aagtcgcact tgcaaatggt
     7681 ggagtattat tttttgatga atttccacat tttaataagc aaatcataga gagtttaaga
     7741 gagcctttag aggatcataa aattcatatt tcaagagtaa attctaaaat cacttatgaa
     7801 acaaaattta gctttatagc tgcccaaaat ccttgtcctt gtggaaattt attttctaaa
     7861 aatctttctt gtgtttgtag tgaaaatgag attaaaaaat acaaaaatca catttcagct
     7921 cctattatgg ataggattga tctttatgta gctatggatg agatcagcaa ggatgataaa
     7981 acgagtataa gttctaaaga aatgagtgaa aaaattttac aagcttttat ttttagtaaa
     8041 aaacgggggc aaaaagaatt taatgggaaa ttaaaagatg aagatttaag tcgtttttgt
     8101 gtattggaaa aagatgccaa agatacgcta gatttagcaa tttcacgtta taatctttct
     8161 ttgcgatcgc ttaataaaat tttaaaagtt tcaagaagta tagcggattt agaacaaagt
     8221 cttaatatta acaaaaccca tattttagaa gctttaagct ttagagcaag gaattaaaat
     8281 ggaaaataaa agtatagcta tctttataga tgcagaaaat atccctgcaa aatacgctaa
     8341 aagtattttt gatattgctt cagattacgg agaggttatt attaaacgca tttatggaga
     8401 ctggactcaa aaaaatatac aaggttggag agagcaaatt gctgaatatt ctttaatcgc
     8461 tatgcaacaa tttaattttg cagccaacaa aaactcaagc gatatgtatt taatcactga
     8521 aatcatgtcc atattttatg aaaaaaacat agatattttt gttattgttt caagcgatag
     8581 tgattatact tcactcattc aaaaattaag ggaaaataaa aaacaagtta taggaatggg
     8641 gcttgaaaaa tctataaaat cctatgtaaa tgcttttagt gaattttttt atttagataa
     8701 agatgagagt aaaaaagaag atattttaag taaggattat ttaagagctt taatcaatat
     8761 caccgaacaa cttatcgatg aaaaagggcg tgccgaatac gcacaaatcc gtactaatat
     8821 gaaccgcaaa tactcggatt ttcatccgca aaattatggt tttaagaatt ttcgtgcttt
     8881 gatccagaaa tttttaccca aaatgaaaaa atttgaagaa gaaagagaaa aaaatatata
     8941 ttttttggtg aaaaaagatt atgaaagcta ttattgataa tataaaaatt ttagaacaaa
     9001 atgctataaa taaaggctta gatgaactta ttttaatgga aaatgcggga ttaaatttag
     9061 ctaaactgat taaaaaagaa gctaaaaaaa ttcgcattca acgcaagatt agaaaagtaa
     9121 aaatactttt tttattaggc gggggtaaca acgcttcaga tggcttggtg gctttaagaa
     9181 atttaaaaca cgctaaagct tataaaatag gctttaaaga aaatacgctt tttaaaaaac
     9241 aagagcaaat tttacaaaat tatgctttta aattttgtaa aaaagaaccc aattttaaaa
     9301 aatttcatat tatcattgat tgtattttag gtacaggttc aaatcgttgt ttagatgaaa
     9361 aaacaagttt aattattcaa aaagttaatc aaagtaaggc tttaaaaata gcttgtgata
     9421 tacctacaaa tttgggattt tatccttgtt ttaaagctga tattacattt tgtatgggag
     9481 ctttaaagga aattttactt gaagattttg ctaaggaatt tgtaggaagg attaaaatag
     9541 ccaatttagg cattagatct aagaaatttt accctaattc tcaagctttt ttgcttgaaa
     9601 aaaaagattt aaaaactata gatagaaaaa tcaacgccaa taaaggaaat tttggccata
     9661 tttatatagt tgccaatgca agtgctggaa ctttagcagg acttggagcc ttaaattttg
     9721 gagcaggtct tgtttcttta gtagcacaaa aaagtttctc gcctcttttg atgttaaaag
     9781 aaaaaattga aaataatgca agtgctattg ctttaggtat ggggcttgaa aatttggatt
     9841 ttctaaaaga tgaaattttg caaaacactc ctttgatctt ggatgcaaac tgctttttaa
     9901 gtgaagcttt gctttggtat ttaaacagaa aagatgttgt tataacccct catccaaaag
     9961 aatttataaa actttataaa atgtgctttg atgagaattt agatatagaa acattgcaaa
    10021 aaaatcgctt tttctatgct agaaaatttt cacaaaatta tgattgtgtt cttgttttaa
    10081 aaggagcaaa tcctattatt gtgcaaaaag aaaaattatt tgttgtaaat ttaggaaatc
    10141 aagccttagc taaaggtggg agtggagatg ttttaagtgg aatgattgct gcacatttag
    10201 gttttggttt tagtgcttta gaagcagcaa aaaatgctac tttagctcat ggacttgttg
    10261 caaaaaaata taaatttaat aaaaatagct ttgacgcttt aaaacttatc aaaggattaa
    10321 aatgcttgta aaattagctg tactttttag tggaaatgga agtaatttag aaaatatttt
    10381 agaaaaactt cataaaaaaa ccatagggga aaatacctat gaagtagtac tttgcatttg
    10441 taataaaaaa gatgcttttg gtgtacaaag agcaaaaaaa tttggtcttg atactgtcat
    10501 tgttgatcat aaggcttata atactcgtga agaatttgat acgattttgg tacaaaaaat
    10561 caaagaaagt ggagcaaatc ttactgtatt agcaggtttt atgagaattt taagtcctgt
    10621 ttttacaaaa aatattaagg caattaacct tcatccttct ttattacccc tttttaaagg
    10681 agcacatgcg attaaagaaa gttatgaaag tgatatgaaa gtggctggag tcagtgtgca
    10741 ttgggtcagt gaagaacttg atagtggaat gattatagct caaaaagctt ttgaaaaaag
    10801 aaatttgagt tttgaagaat ttgaagaaaa aattcatagt ctagaacatg aaattttacc
    10861 cttaagtgtg attgaaattt tttcttaaag aattaaaggt atttgcttta aaactataaa
    10921 atatcgcttt aaaaaatttt aaaattttca aggaaattta tgtttgaatg gatatttagt
    10981 attgatgctt ggattacttt agctacttta agtgctcttg aaattgtact agggatagat
    11041 aatatcattt ttttagctat tttagtaagc aaactacccc ctgaacatcg tgataaagga
    11101 cgtatcttag gtttagcttt tgcaatgatt acaagaattt tacttctttt atctcttttt
    11161 tgggtaatga aacttgtaac acctttgttt agtgtattgg gcaatgaaat ttcaggaaga
    11221 gatctagttc ttttactagg tgggcttttc ttgattgtaa agtctattaa agaaattaaa
    11281 gagcaaattt ctcatcaaga agaaagtcaa agtcatttta aagcaagcaa taaactttgg
    11341 atagttgtag ctgaaattgc tgtgattgac atagtgtttt cgcttgatag tgttattacc
    11401 gcagtaggaa ttgctcaaga tgtaaccatc atgattatcg ctgttattat cgcagtagct
    11461 gtgatgcttt ttgcttctaa acctatagca gattttgttg aaaaatatcc aagcattaaa
    11521 attttagcct tagctttttt ggtgctaata ggcgtagttt tagttgctga aagttttgat
    11581 attcatattg ataaggcata tatttatacc gctatggctt ttgctttagt ggtgcaaatt
    11641 ttaaatattt tagatcaaag aaaggaaaaa aatggctaaa gacactaatg gaatagaact
    11701 taacacaggt gatagcgtga gtgtaataaa agatcttaag gttaaaggtg caagtacaac
    11761 tttaaaacgt ggaactacta taaaaaatat taagctcact tctaaagaag gtgaaattga
    11821 ggctagagta gataaatttg gcgttattgt tttaaaaact gaatttttaa agaaaatcta
    11881 ggcaaagaat gtgcgaatct tacttgtttt aagagggaat tattacgcag gacaagaaga
    11941 atttatcaaa aataataaac ttcaaaatta tacacttgat ttaaatgctt tgcgtctttt
    12001 atcaggaagc gttaaaaata tagtcagtga atataaaatt ttaaatgtta aaaatgatga
    12061 agatttgagt aaaattttac tcaaacttct agaaatgcgt atgcaaaaag gtgagtttag
    12121 catcataaac gcttacaacg aaacattaaa aatttataaa gacttagcta aacaatatcg
    12181 ctataaaata tatgttattg tttttgatag ctctttaaaa caatgtcaag aaaaaaatct
    12241 tttagaagct aaaaaaaatg gatatatcat tccttatgct cttttggaaa aaactcaaga
    12301 tttgctcaaa aaaaatccaa aaaaataccc aattttagac tcaagagact ggaaaaaatg
    12361 tctttaccaa atgccaaatt taagcaaata caaaaaaatt catcatatag gagatttaca
    12421 aggttgctat agtgttttaa aagaatacat taaaacaatc aaagaagatg aattttatat
    12481 atttttggga gattatatca acagaggtat agaaaatggc aaagtaataa aatttctttt
    12541 aaaaatttgc gaaaaagaaa acgtatgctt attagaagga aatcacgaaa gacatcttat
    12601 aaaatgggct aatggagaat tgtcaaattc caaagaattt aatgaaaata ctttaaagga
    12661 ttttagaaaa gaaaaactta ctccaagaga tgctagaaaa ctctatcctc atctaaaaga
    12721 atgtttatac tacaaattcc aaaataaatt catattttgt tcacatggag gagtaaattt
    12781 tataccctcc aaacctgaaa aaataagttt tataccaagc catgacttta tttatggtgt
    12841 aggtggatat gaagacagtc aaaaagtagc aaatcaattt tgtaatttca cctcggacaa
    12901 tctttatcaa atctttggac acagaaataa agaaaaactt cctatgaaaa tagccaaaag
    12961 agtattttta tgcgagggta aaatagatga tgatggatat ttacgcgtag ttacactaga
    13021 tgaaaaaggt tttgagtgta tagaaattaa aaaccaaatt tacaaaaaga aataaagcct
    13081 aaagaggctt attcttcatc tttatttgtt tttttaacca ccttaacacg ctctatagaa
    13141 ttcccatcca tttttttaac ttcatagtaa caaagttcat cttcaatgcg atctcctacc
    13201 ataggcaagc gtcctaaaag attaaataca taaccaccta tagtaacttg ttctaaatcc
    13261 tcatcatagt ttattacaag catttcttca acagtttcta tatcgcatcg tccttgaaat
    13321 tcatagatat tttcagcaag ttttttatag ctgtcttctt catgctcgct tttaatttcg
    13381 ccaataattt cttccataat atcttccatg gttaaaattc cagcagttcc accatactca
    13441 tcaactacta atgcagtatg agagcgttct ttattcatca ttacaagtac ttttgaaatg
    13501 ctgatatttt caggaaccaa aatcaaaggt ttaacaaaag tatctaaatt ttgactttta
    13561 tggtttaatt cattttgtat tatatctcgt atgtgtatca tacctaaaat agtatcttta
    13621 gaaccatcaa tataaggaaa gcgagtatgt ttatgctcac aaatgatttg catattttct
    13681 tcgtaacttt tttgtttatt tagacaaatc atatcttttc taggagtcat aatctcttta
    13741 gcaacagtat ctgaaaaatc aacagcattg cgtatgatct ctgtttcaaa ttcatctaaa
    13801 actccacctt tttgactctc acttgctatg attttaattt cttcttcgct atgagttagc
    13861 tcgctttctt tagcaggttt tattccaaaa agtttcaaac ttatagctgc taaaaaatcg
    13921 aaaattttaa tacaaggcaa aaagagcatc caaaaccaat gaagcggtct agctataaat
    13981 aaaaccgctt tatctgcaac tgcaatagct atactttttg gcacaagttc tcctaaaacc
    14041 acatgtaaaa gagtaataat gctaaaagca ataatgaaag ctatagtatg gataataaca
    14101 gtgctaaaac caagattaat aagcggaatt tctagcattt ttgcaatagc aggctcacct
    14161 atccaaccaa gagctagaga acttaaagta attcctaatt gacaagcact aagatacgta
    14221 tcaagccttg aagtaacctc caaagctttc ttggcaccag cttttttttc ttttaccatc
    14281 tcttcaagct tggaacgacg tactttaaca atactaaatt cagacaaaac aaaaaaacca
    14341 tttaaaaaca ctagagcaag tgcaacaaca accataagca tagaatatcc tgcatcaaaa
    14401 gatgctgtag aagtttggtt taaatccaaa acctgactgg ggtccaatga agctccttaa
    14461 gaaataaaat attattaaac cttattatac acaattaaaa gtaaatttaa tatttgaatt
    14521 ttttcttgca ttttataaga aaaaactaag acttataaga aatatttttc tcaaattctt
    14581 ttaaacgctt atatatactt ctaagttgag tgatagttgt ccagtttgtg ataaaaacac
    14641 taaaagagct tcgcacttga tcaaatgcat tattaatctg cattacaata ccaagtccta
    14701 tagctccagc aaaaagccct ggtgccatga ttaaaaatgg cactataact atcatttgct
    14761 caaataaaat gagccaaata ttaaaatatc cataatgtaa aaaaagtctt ttatagttaa
    14821 atttaagccc tgtaaaaagc tctatcatag tctcattttt agcgtattct ttgcgattat
    14881 cctcagcata aacaagctct tttctaaaag ctgcttcagc tttttgattg ttatattcaa
    14941 gtccaggaag cttaatacct acaaaccatg acacaaccaa gcctcctaaa gaaatcaaaa
    15001 gtgcaatata aacaagcaaa ccatcaatgt tttttaaaaa ataaaaaaaa gaattttcgc
    15061 ttaaatttgc aaataaagct ttactcacaa catcacttaa actccataaa atcggaataa
    15121 atgctacaag ggtcatcaaa gcttttataa aactaagtcc taaactctct acgattttag
    15181 aaaaattata agtatcttct tgaattcttt gcgaacttcc ttctatatta tcatctttat
    15241 ttttccaaaa ttttaaataa gaaaaagtca tagcctcacg ccacttaaaa gcatagacgc
    15301 tagcaaaata gatattaatt gtagcgatta aaacataagg aatagcaata gccaaaaaaa
    15361 ctaaaatcaa agcataaaaa tcacttgctg aataatttgg cttttcaatc atagccctag
    15421 agttgaaaaa atattctaat aaattttgat aataatacaa tgcgccttta ttgataaaat
    15481 tagctttttg gaaattttgc tcagctcttt gattagcctc ttggattaaa gtggcattat
    15541 tttcaagatt ttcttctatt ttttgcgtag aattagaatc caaaagttct atttttggct
    15601 tttgtaaaac attgtaaaaa tcactatacc atgaattgat cgcaacattt aagcttgttt
    15661 gtatatataa gaaaaataac agtaaaaaaa gtcccaaata agcccataaa gcccattttt
    15721 tacttttaaa aaacgaagag aacataatca tcacctttaa aataaaaatt ctaataaact
    15781 ttttttaatg aaaagtttat tttttaccta aatagtcttt aatattgtaa tcaataggca
    15841 taacaaaact gattttatca ccatttttta acatttcttt aggcggtttt ggcaatggag
    15901 aagctctttt aaataaactt aaagcttcat cattaagcgc tgcataaggg caagattttt
    15961 taagctcttt gcttaagaca tttccgcttt catcaatgct tacgcgaatt cttacaacgc
    16021 cttcttgttt ttgcattatc gcttcttgag gatatttttt aaatttagtc aaatgagcca
    16081 taagcaaagc ttgatagctt ttaacttgtt ctttggcatt gccacttact atagtttgtg
    16141 ttttatcttc attactttgt agcggagcac tgagcgattc atttttaaat tttgaatttt
    16201 cacttgcatt agctatttct ttttgagctt ggttttcatc ttgcttttca atcttttttt
    16261 gaacttttaa tacagcattt ttatcttgag aattaagact tattctttcg tcttgttttt
    16321 tgtttttatc ttgagaatta ctcttttttt gatcaatcga aacttctttt aattccccga
    16381 taggaggctc tgataccatc ataatggaag taaattccgc tccttgttta aaatcaacac
    16441 cacttgattt ttcttgaata taaaaagaaa aaagggaaaa cattaatact aaagtatgca
    16501 atatcaaact taacacaaac ccaaaaatca cactagactt catactaatc catcttttta
    16561 cttgaaagag ctatttttcc atagccattc tcttttaatt tttgcattac ttgcataata
    16621 tcttcatact ttacactttt atcgatatga aaataaataa tttcttcttt attgcctttg
    16681 gtttttatat ctaaagcact tgaaagattt tctaggctta atttatcatc attaatagcc
    16741 aaagtattat cagtatttaa ataaagtatg atgggatttt taagcttatc ctctgcttgc
    16801 tgcgaactct tgggtaattc tattttgata gaacttgtga taagaggagt aacagccata
    16861 aaaacaatca ataatacaag cataatatct ataaaaggag ttatattgat ctcacttaac
    16921 tcctcttctt tgtgagccat ttcagttttt atcattaaaa taactcctat gaaaaagtat
    16981 atagacaaaa tttgcaagct catctaaatg gtgcataagt tttaaatttt ttcttgtaag
    17041 ataattataa aaaagcaccg cagggatagc agctatcaag ccaaaagctg tagcaaacaa
    17101 ggcttcagct ataccaggcg caacgactgc caaagaagca ttgccaagat ttgctatacc
    17161 tataaaagca ttcataattc cccaaactgt tccaaaaagc cctataaaag gtgcgctagc
    17221 acctatactc gcaagcaagc tcaagccatt tttacttgct gtgatttgct ttgagatggt
    17281 attttgcaaa cgcaattcca tgcgctcttt tatatgatca tttttatatt cacttttttc
    17341 aagctcatct tgaatttcta aagataaaac acctgcaaaa tcctttgtct gatctaattc
    17401 attgagattt tttaattctt ttatcttttg tatagacaag tctagatttt tcttcataaa
    17461 ataaaattgc ataagcttag aaataaaaac tgtccatgct aaaatggaaa ataaaaccaa
    17521 tatataaata acacctttta ccacctcatc agcattttga taaagactag aaagagaaaa
    17581 ctctatttta ggtgcttcgg tttctatctt gggagaatca aaagataaat ttgtatctgt
    17641 tgcatttact tctgcattta aatttaacaa taaaa
//
LOCUS       DARGEX010000027        17142 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.027, whole genome shotgun sequence.
ACCESSION   DARGEX010000027 DARGEX010000000
VERSION     DARGEX010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17142
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.027"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..461)
                     /locus_tag="SF010_000706"
     CDS             complement(<1..461)
                     /locus_tag="SF010_000706"
                     /inference="COORDINATES: protein motif:HMM:NF015786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEG8229658.1"
                     /translation="MNSNDIVLLKCGEVSYKIYLPNRNIDYIQKKIYNELIPYEYEML
                     QDFLKKAKKNTIIVDIGANIGNHSLYLAAHGFDVCAFEANQTLCDIFKISIKLNGFKN
                     LKLYEFGLSDKKEMAVLDNLNPENLGGQSLKIEDFGNIFLHPLDDIKFEKD"
     gene            complement(481..1704)
                     /gene="wecC"
                     /locus_tag="SF010_000707"
     CDS             complement(481..1704)
                     /gene="wecC"
                     /locus_tag="SF010_000707"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002952841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HEG8229659.1"
                     /translation="MNQFNKVCVIGLGYIGLPTAAIFASRKIKVIGVDINQNIVDIIN
                     KGKIHIVEPGLDILVHMVVNDGYLKATTLPEEADAFIIAVPTPFKGDNHEPNLDYIEM
                     ASKAIAKVLKKGNLVILESTSPVGTTEQMAKWLAEERSDLSFPHQCGEVSDIKIAHCP
                     ERVLPGQVIRELVENDRIIGGMTQKCAEYAIRLYKIFVQGECIMTNARTAEMTKLTEN
                     SFRDLNIAFANELSILCDKLDINVWELIKLANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VYQNPNEAKIIKTAREVNDNKPNFVVQKIKKKIKDILGPKIACLGLAFKPDIDDLRES
                     PALDIVIKLASENASQILVVEPNIKQLPLKLQNKRNIKLVCLSQALDEADVVAVLVRH
                     KEFIEVQSDKVVSFC"
     gene            complement(1691..2839)
                     /gene="wecB"
                     /locus_tag="SF010_000708"
     CDS             complement(1691..2839)
                     /gene="wecB"
                     /locus_tag="SF010_000708"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018060478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEG8229660.1"
                     /translation="MKKILIVFGTRPEAIKMAPLVKIMENRNDVNFRVCVTGQHRQML
                     DQILNIFDIKPDYDLNIMQENQDLYDITLKILCGMKNVLNDFKPNIVLVHGDTTTASV
                     TALAAFYQKIKIAHVEAGLRTYNICNPWPEEANRQIIGVLANIHFTPTVKSAENLIKE
                     GKNKEGIFITGNTVIDALFYMTEKIKNDKTFKIKVLSSIGNEYKINDNKKFILVTGHR
                     RENFGEGFLQICEALKIIAINNPDIDIVYPVHLNPNVQKPVKMLLLNISNIYLINPLK
                     YEEFIYLMSKSYFIITDSGGIQEEAPSLGKPILVMRETTERPEAVEAGVVKLVGACKQ
                     NIIRESQKLIDDQDEYEKMSKAYNPYGDGRACEKIINILIKGKNNESI"
     gene            complement(2894..3841)
                     /locus_tag="SF010_000709"
     CDS             complement(2894..3841)
                     /locus_tag="SF010_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG8229661.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASKAEEIMLKYKIKEIVVSKENKVVGIIQFYAIGEI"
     gene            complement(3851..5509)
                     /locus_tag="SF010_000710"
     CDS             complement(3851..5509)
                     /locus_tag="SF010_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG8229662.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKMAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(5511..6629)
                     /locus_tag="SF010_000711"
     CDS             complement(5511..6629)
                     /locus_tag="SF010_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG8229663.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIIWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTNGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(6629..7291)
                     /locus_tag="SF010_000712"
     CDS             complement(6629..7291)
                     /locus_tag="SF010_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229664.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(7288..8070)
                     /gene="kpsM"
                     /locus_tag="SF010_000713"
     CDS             complement(7288..8070)
                     /gene="kpsM"
                     /locus_tag="SF010_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HEG8229665.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGVMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(8142..8549)
                     /locus_tag="SF010_000714"
     CDS             complement(8142..8549)
                     /locus_tag="SF010_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229666.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            8624..9187
                     /gene="ciaI"
                     /locus_tag="SF010_000715"
     CDS             8624..9187
                     /gene="ciaI"
                     /locus_tag="SF010_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG8229667.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKHQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            9224..9913
                     /gene="dut"
                     /locus_tag="SF010_000716"
     CDS             9224..9913
                     /gene="dut"
                     /locus_tag="SF010_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG8229668.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYSILNDIELIIHKCSGFGFNLEELLSIYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            9915..10628
                     /locus_tag="SF010_000717"
     CDS             9915..10628
                     /locus_tag="SF010_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG8229669.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(10611..11576)
                     /gene="tilS"
                     /locus_tag="SF010_000718"
     CDS             complement(10611..11576)
                     /gene="tilS"
                     /locus_tag="SF010_000718"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8229670.1"
                     /translation="MQIKNEILSLLKRGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKQAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDYLILAHHLNDQFEWFLMQLSRGAGLAEILGMQEYEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFSYLGEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKEFLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(11566..12885)
                     /gene="rimO"
                     /locus_tag="SF010_000719"
     CDS             complement(11566..12885)
                     /gene="rimO"
                     /locus_tag="SF010_000719"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG8229671.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPNKADVLIVNT
                     CGFIDSAKKESINVILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIVAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYFYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCAFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            12958..14055
                     /gene="prfB"
                     /locus_tag="SF010_000720"
     CDS             12958..14055
                     /gene="prfB"
                     /locus_tag="SF010_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG8229672.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEETGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(14216..14530)
                     /locus_tag="SF010_000721"
     CDS             complement(14216..14530)
                     /locus_tag="SF010_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229673.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(14652..15770)
                     /gene="truD"
                     /locus_tag="SF010_000722"
     CDS             complement(14652..15770)
                     /gene="truD"
                     /locus_tag="SF010_000722"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG8229674.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVREKPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHSKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(15739..16560)
                     /locus_tag="SF010_000723"
     CDS             complement(15739..16560)
                     /locus_tag="SF010_000723"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG8229675.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIETIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
     gene            16647..>17142
                     /locus_tag="SF010_000724"
     CDS             16647..>17142
                     /locus_tag="SF010_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229676.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYIGDGVFYLASKMIEKYPE
                     KKIEI"
BASE COUNT         5884 a         3020 c         2152 g         6086 t
ORIGIN      
        1 atatcttttt caaattttat atcatcgaga ggatgtaaaa aaatattacc aaaatcttca
       61 atttttaaag attgtcctcc taaattttca ggatttaaat tatctaaaac tgccatttct
      121 tttttgtctg ataatccaaa ttcatataat tttaaatttt taaatccatt taactttata
      181 cttattttaa atatatcaca aagtgtttga ttagcctcaa aagcacatac atcaaagcca
      241 tgtgctgcaa gatataaaga atgatttcct atatttgctc caatatcaac tataatagta
      301 ttctttttcg ccttttttaa aaaatcttga agcatttcat attcataagg aattaactca
      361 ttgtaaatct ttttttgtat ataatcgata tttctatttg gaagatagat cttatagctt
      421 acttctccac actttaataa aacaatatca ttagaattca taacataatc cccttagtta
      481 ttaacaaaaa cttacaactt tatcggattg cacttcgata aattctttat gtcttactag
      541 tactgcaaca acatctgctt catcaagtgc ttgacttaga caaactaatt ttatatttct
      601 tttattttgt aattttaatg gtagttgttt tatatttggc tcaacaacca atatttgact
      661 agcattttca cttgcaagtt ttataactat atctaaagca ggagattctc ttaagtcatc
      721 aatatctggt ttaaatgcca atcctaaaca agcgatctta ggccctaata tatctttaat
      781 ttttttcttt attttttgca caacgaaatt tggtttattg tcattgactt ctctagccgt
      841 tttaataatc ttggcttcat ttggattttg atatacaata aaccatggat ccactgctat
      901 acaatgtcct ccgactccac aacccggttg caaaatatta actctaggat gacgattagc
      961 aagttttata agttcccata catttatatc taatttatca cataaaatag ataattcatt
     1021 agcaaatgct atatttaaat ctctaaatga attttcagta agtttagtca tttccgctgt
     1081 tctagcattt gtcataatgc attcgccttg aacaaaaatt ttatatagcc ttattgcata
     1141 ttcagcacat ttttgagtca tacctccaat tattctatca ttttctacaa gctctcttat
     1201 aacttgtcca ggtaaaaccc tctctggaca atgggctatt ttaatatccg acacttcgcc
     1261 acattgatga ggaaaactca aatctgatct ttcttctgca agccactttg ccatttgttc
     1321 tgttgttcca actggagatg ttgattccaa gattaccaaa ttaccttttt ttaaaacttt
     1381 tgctattgct ttagatgcca tctcaatata atctaaattt ggctcgtgat tatctccttt
     1441 aaaaggagtt ggcacagcaa taataaaagc atcagcctct tcaggtaatg ttgttgcttt
     1501 gagataacca tcatttacaa ccatatgtac caaaatatct aatccaggct ctactatatg
     1561 gatttttcct ttatttataa tatctactat attctgattt atatccacac ctataacctt
     1621 aatttttcta ctagcaaaaa tagcagcggt aggaagacct atataaccga gtccaatgac
     1681 acatacttta ttaaattgat tcattatttt tcccctttat taatatattt ataattttct
     1741 cacaagccct accatctcca taaggattat atgctttgct cattttttca tactcatctt
     1801 gatcatcaat taacttttgt gattctctta taatattttg tttacaagct ccaactaatt
     1861 ttaccactcc agcttctacg gcttctggtc tctctgttgt ttcacgcatt accaatatgg
     1921 gctttcctaa actaggagct tcttcctgta taccacccga atcggtaatt ataaaatacg
     1981 attttgacat aagatatata aattcctcat atttaagagg atttattaaa taaatattag
     2041 aaatatttaa aagaagcatt tttacaggtt tttgcacatt aggattcaag tgaacaggat
     2101 aaactatatc gatatctgga ttattgatcg caattatttt taatgcttcg caaatttgca
     2161 aaaatccctc accaaaattt tctctacggt gtccagtcac taaaataaat tttttattat
     2221 catttatttt atattcatta ccaatagaag ataaaacttt tattttaaaa gttttatcat
     2281 ttttaatttt ttccgtcata taaaacaatg catcaataac tgtattgcca gtaataaaaa
     2341 taccctcttt attttttcct tcttttataa gattttcagc acttttaacc gttggggtaa
     2401 aatgaatatt tgccaaaaca cctataatct gtctatttgc ctcctcaggc caaggattac
     2461 aaatattata agttctaagt cctgcttcaa catgtgctat ttttattttt tgataaaaag
     2521 cagccaacgc tgtgacactc gccgttgtag tatcaccatg tactaaaaca atatttggtt
     2581 taaaatcatt taatacattt ttcatgccac aaaggatttt taaagtaata tcatataaat
     2641 cctgattttc ttgcataatg tttaaatcat aatcgggttt aatatcaaaa atatttagaa
     2701 tttgatctaa catttgtcta tgttgcccag ttacacaaac tctaaaatta acatcatttc
     2761 tattttccat tattttaact agcggagcca tttttatagc ttccggtctt gtgccaaata
     2821 ctattaaaat ttttttcacc aaataaaaac tccttttaat ttttcactaa ttataatata
     2881 taaaaaatgc aaattaaatc tcccctatag cataaaattg gataatacct acaaccttat
     2941 tttccttaga tacaacaatt tctttaattt tatattttag cataatttct tctgctttac
     3001 ttgccatagc atcagcatca actactttag gatttgtact catgatttct ttagctttaa
     3061 aatcaaatct tggtttatca cttgctttta aagcacgacg caaatcccca tcagtgataa
     3121 taccaaccaa tttttcattt tcaagtacta cacaaagtcc tagttttcca ctagtcatca
     3181 catcaacaag atcgttaaat tcggtatcag gatgaactat aggaaggttg cttgaaacca
     3241 taagatcttt taccttggtt aaaagcttac gacccaaact tccccctgga tgaaaaaggg
     3301 caaaatcatc aggcttgaaa tttcttacct tcatcaaagc agcagctaaa gcatccccca
     3361 taaccaaagt tgcggttgtc gaagacatag gagcaagctg caaaggacaa gcttcctttt
     3421 ccacagctat atttaaaaat atatcgcttt gctttacaag ggtggaattt tttttaccac
     3481 acattactat aagtggaatt ttacgctttt ttatagctgg aatgattttt aaaatttctt
     3541 cagtttcccc tgaatttgaa atagcaatta aaacatcttc agaagttagc attccaagat
     3601 ctccatgcaa agcctctcct ggatggatga aaaagcttgg cgttcctgta cttgctaaag
     3661 tagctgctat cttagcacct atatgacccg atttacccat tccactgact atgcaacgcc
     3721 ctttggtatt tagcatcaaa ttcacagctt gattaaaatt ttcatctaaa tttttagcca
     3781 aatccaaaat agcttgcgct tctttttcaa agacttcttt ggctatttca agagtattca
     3841 tttttaaacc ttaaagatta agcacaacat tggttgcaat agcaatttga taaagaattt
     3901 gagttaacat tgaaaaaatt tgcaaattct cactatctac ttttggcaat actaacacag
     3961 aatcgcctgg tttcatatct ataccactat gatatttttc agcttttcca ttgcttcgta
     4021 tcaccaaaac ttttgaagta tccgctcttt ctccataacc tcctgcaaga ttgatataat
     4081 atcttaaatc tttgccctta tcatacacaa aagctccagg taaagaaacc tcaccttgaa
     4141 ctatgatgag attattctta cttggtacat taatagtatc accatcttct aaaataaccg
     4201 aattataaga ctttggatta tcaatgacaa tttgaccctt aggctctact tgcttagctc
     4261 tttggataaa ttctaaaatc gtttttgctt gttgagctct tatagctgca ccttgagctg
     4321 taacagaacc actagttaaa gctagagttt caagctcttt aagctgagca ttgataagtt
     4381 ctttttgagt tctagctaca ctttttctaa acacttgtaa agcttgcatg tttgattgtg
     4441 gattagcttt aattaattta gaaatatctt ctaaagtcgt tcctttaccc acaactaaag
     4501 tttttaaacc attatgctcg ccatttacac ttatagttat attttcagaa acatactcag
     4561 ggtgaaattc tacctcatct cccgttctaa gtaaaacttt tgaaaattgc attttattat
     4621 aagcactgac atcaagttta tgatcttcac cataactttt tacgatagca ttagtcacga
     4681 taggtttagc acctgatact ctagctaagt cagctaaagt tttaatatca tttgaaagtt
     4741 caaaacgaaa aggtctttgc acatcaccgt taacaaaagc gtaattttga acatttccta
     4801 ctaaaataac atctccactt ctaaaaggaa aaagatccat ttgccccttt agtaaaaaat
     4861 catataaatc aatatttttt atcacgctgt tattacgcaa aatttgaata tctctaaaac
     4921 ttccatattc taaatttata ccccctgctt tatcaagata ctggatcact gaatccgaac
     4981 taagtccttg ataaagtcct ggagcattaa cgcttcctgt tacaaaaaca ctgacatttt
     5041 gataagcatt catatctgca taaacaaaaa cattgctttt atagatttta ttaacacgtg
     5101 cttttataac acttacaagg gcgctatttt tcacacctag taaatttaca gctcctactt
     5161 tagggataaa aatatttcct tgagaatcca ccactaaaac ttgcgaaaac tcaacagctc
     5221 cccaaatttt aagactgatt tgatcaccaa ctgccatctt ataatctggg ttataaactc
     5281 tttgattgta atttttaaaa tttccattaa aaagatgagc gccaaatact aaaatttgat
     5341 gaatttttgt aagattattt tctttatttg ctatatcata atttgagctt aaattttgat
     5401 ctatgctagt tgtagtagaa ccttgatcct ctgctgaaat gatttgtgaa acatccacag
     5461 ctccaaaaca taaaatacaa ctaaaaagta aaattaatat ttttttcatt ttaatactta
     5521 tgctcctcta ttatcatttt aataaattta acaatcccaa aaatcaaaga taatacaata
     5581 aatgctgtta aaatatcata aattctttca ggatattttg cgctttctgg aatatctgga
     5641 ctttgaatga tgacaagttg ttttattttt cttaatgctt ctattctagc actttcataa
     5701 gcttttaaag ctgcttcata agctttttgc gcaaaagtag cttctatagt tagatcttga
     5761 aatttagcag ccaaatcatt aagcttttga gaagaattgt tagctgaaat tttagatttt
     5821 tcccttaaaa gctgtttttt aatcgcttca atttctgctt taagtgctac tacttcaggt
     5881 gctgcatcat tcatatagct ttgtaaagtt aaaagtttag cttctttttg agctaaatta
     5941 gtctcaattt gcgcaaccaa acttgcttta gcttcagctt gtttcaaggg atcaaaaacc
     6001 ccatatttat tttgaaaagc aatcaaatca ttttgtgctt tttgatatcg ttctttgtat
     6061 ttttgtactt cattttcagc aaaagccatt tgttctctag ctgctttatg agagatttcg
     6121 ttgataaact tttcactttc ttgcataata gtttgagcaa tcaaatgagc tgatttaggt
     6181 gtaaaacctt ctacttctac ctgcaaaagc ttagtagttt catccgtatg caccttaact
     6241 cttgcttggt aatatttaag ataagattct atcgaacttg aatcccaaat tttaaaaggc
     6301 aaatctatat gttgttcttg ataaagactt ttaagtttaa ttttcccatc taaaattttt
     6361 aacatatcac ttgattctat ataacctttt agataattta aatcttcgct tgctgtagaa
     6421 gtactaccaa gcaaagacaa aattccattt gtttgagcac tttctccact tgttgatcta
     6481 acatctaaaa tcatcgtgct tacatatctt ggcgctgcaa tcaatgtata ataaatcaca
     6541 acaaaaatca ttataaacca aataatttta aaagaatcaa atatacttaa atctttgatt
     6601 ttttctaata aagttttatt ttcttccatt aagcttttcc ttgatataca gctattcctt
     6661 catctacatc atcataaacc gtaatttgtc catttttcat ataaattatt ttatcacacc
     6721 attctttaat ttcagctaca ttatgagata ccataatcac ctttgatttg cttaatcttt
     6781 ctctatataa tttcacgctt ttttccctaa aagcaggatc tccaacagct ccagcctcat
     6841 cgatcaaata ataatcaaaa tcaaaagcca tactaagtcc aaaagctatc ctagcactca
     6901 ttcccgaaga ataagtcttc ataggctcat caaaaaattt tcctatttca gcaaaatctt
     6961 ccacaaattt tactttttct tgaagttctt tacccttgta tccatacacc ctagctacaa
     7021 atttagcatt atctctggca gttaaagaac cttgaaaagc tccatttaaa cccaaaggcc
     7081 aagataattt tttattagta attatcttgc cactatcagg aagctctgct ccgcttaaaa
     7141 gtctcatgag agtggacttg cctgcgccat tatatcccat taaacctatg ctacaatttt
     7201 caggaaattc aaaagtaaaa tttttaaaaa cataatgcct tccaccacta aataaaggat
     7261 aagatttagt tagattaatt agcttgatca ttcttttttt gccgccgtta gagcttgtct
     7321 attatagtag taaataaaaa gccctataaa taaaacaagt aaaatccaaa atatagcata
     7381 aaaataacta tattcatctt gcaaaggata attttcaaaa aaattaaatc ttaaaagctc
     7441 cattatgtga agcaaaggat tgtaataaaa tatatcaagt aaaggacgag gagttaacca
     7501 ggtgggaaat ataatcccag aactccaata aaatactata ctaaaataag ctaataaagt
     7561 tcttaaaggt tctacaaagt gccaaacaat agcaaaacaa atccctaaag caaaagctga
     7621 gcatatgagt aaaaaaatac aaaataaaac tccaagtaaa tgaacaggaa atacatcgag
     7681 tctaaagaac caccctgcaa aaaaaagcac agtgataaaa atcacaaaat aaatacaaaa
     7741 ttcaagcaaa gttctagcaa taaatacatg tataggtttt acaggtttat aggcaaacaa
     7801 agataaattt gctcctattc cattcataag ctgagttact atacttctaa acataaaaaa
     7861 aggcataacg cctgaaatca aaaacataaa aatagaaatt ccttcaggca taacttgatg
     7921 atgatattcc ctaataacag ttcctataat agtcaccaaa agcacaacac tcataggctc
     7981 tccaactacc catatatatc caagatacct attttttcca aatctagttt ttaactctct
     8041 aaaaaataaa gcgtgaatta catttaacat ttattttcta tacctaacaa tttacataaa
     8101 ccataatcat aactcatttt tttaaacaaa atcataaaaa tttatttttt acaaaattca
     8161 agctttttac taagtcctaa agcattgtta gtaaatttaa gccaaaaaag ctctaaggca
     8221 taaatttttg cacttttatc aagtttagca aagggaaatt tagaaaaata aattttcatt
     8281 tgctccttgc ttgccatttt aaactcggcc ttagcttgca caccttttaa aaaggctatt
     8341 ttactttctt tggctatatt aagtgctata cttgaatttt cactggctaa tcttatatgc
     8401 ttagtatctt catgagaagc gataataaaa gctaaattct tctcatcaaa agcataaaaa
     8461 gcactagctg tataaacacc tttttcatca atcatagccc aagataaaag ctgctcattt
     8521 tttataaatt ctaaaattct ttcatccata ttgtaaaaat tatactaaaa tatttttaaa
     8581 aataaccgat ttttaattta aactataaat ataaggggaa gaaatgcaaa ttgatgctag
     8641 caaaaaccaa agtttttcga tggattatac aacaaaaagt ggcaaacatt tagccttatc
     8701 tatgtatgac aatcaaagcg tgagttatgc aaataatgaa gaaggtaaaa ctcttaatct
     8761 taagcatcag tatggcttta gctttacttt tgaaggctct aagctcacac aaaatgatct
     8821 tgatgagatt aaaaatgcta tgaaagaagt tgaacctatg atcaaagact ttttagcaaa
     8881 ttctaaagtc ggagagttaa agccaaaaga aattatagaa tcagctatgc aaatggcaaa
     8941 tgttctacca acaccaaatg atgaaaacca tcaaaatgct attatgaata attttacaaa
     9001 taaactcagt gatttactaa aacaaaatca aacagatgat aaagatatca atgcttccat
     9061 gcttgaagat agcaaaaaac ttcttgatga agttttagaa caaatgaaaa aacaacttga
     9121 aaaacagcaa gaaaaagcca aggaaaatca agataagaca gatgatagtt taaatcttta
     9181 cgcttaaatc atataatatt aaaaattatc aaggagtttt taaatgacaa atatcgaaat
     9241 tttagaaaat atgctcaaac tccaacaaaa actcaacgat gaaacaaacg gcttaaattg
     9301 ggaaaatggc tacaccaaag aaggaaaact gatcagttgg agacgctgta tttatatgga
     9361 atgtgcagaa cttatagact cttttacatg gaaacattgg aaaaatattt caagtccaac
     9421 aaattgggaa aatgtgcgta tagagattgt cgatatttgg cattttattt taagtctttt
     9481 acttgaagaa tatcgcgata aaaacaataa agatttcaaa gctatagcca cagaagttaa
     9541 tgctgtaagc gtgtttcaag atttttgcaa agaagaagaa taccctaatg agggtgatat
     9601 ttatagcatt ttaaatgata tagagcttat tatccataaa tgcagtggtt ttggatttaa
     9661 tcttgaagaa ttactttcaa tatattttac tttagctatt aaatgtgggc taaatcttga
     9721 aattctttat aagacctaca taggtaaaaa tgttttaaat atttttagac aaaacaatgg
     9781 ttacaaagat ggtagctata aaaaaacttg gaatggcaaa gaagacaatg aagttttagc
     9841 tcaaatttta gaacaagagc ttgattttga tactatttat aaaaaactag aagaatgcta
     9901 caaaaaggca taatttggat attttaaaac ttgcaatcaa agatttttta agtcttaaat
     9961 ttttaaaatt tgccttaatt cctttgattt ttagccttat actgatgctt tttttaggag
    10021 tacttggctt ttcggccttg cttgattatt ttaattcttt atttagcgtt ggagaggatt
    10081 cgttttgggc gtggttttat gcccttcatt ttgtacaaat tttaatcacc atcataagtt
    10141 ttttattttc aggttttatt gttgtttttg cttcggtttt tttagccctt tttatcactt
    10201 cttttcttac tccttttatc gctaaagaaa tcaaccaaaa atattaccat tatgataata
    10261 caaacgaagt ttcaacccta aaaactatct ttgaaatttt taaaatattt ataaaattta
    10321 tagggatttt attgctttgc accttggctt tatttttacc ttttatcaat atttttgtat
    10381 attatcttgc tttttattat ctctttcaca aacttttaat gattgatgtt acaagcacga
    10441 ttttagacaa agaaagtttt aaaaattttc attctgattt ttcgccttta gagtttaaat
    10501 ttagcactct ttgtttttat ctactctcat cagtgccact tttaggactt tttttgcaag
    10561 tattttttgt gatttttctc acacatttag gctatcaaag aattttaaaa ctaaaagcta
    10621 aggcttgaaa tatcgatttt gtgattatat aaataagctc ttaaaagtct tggaatttta
    10681 gctattctac actcttcttt aaaattttta ggtaattttt gacaagtttc atattcaaaa
    10741 acaatagctt gttcgttttt atatacaagt gctattttac cacctaaaac acaatcaccc
    10801 tttaaaaact cttttctttg cgctgtgctt aaaagtaaac ctttcatttt cactgctcta
    10861 gcaatcaaac tttcattttt aggacaaata agaagtcctt gaatttcttt gatattttca
    10921 aaatcataaa gttttttcct atcttcacca agataagaaa agcttctttt taaaccctga
    10981 tgaaatttac tcacaaaggc attagagaaa ttttttctta tataatttct aaaatatttt
    11041 tcattttcat tactttcatc atggaaataa aaaatatctt tttcttttaa aaaagatgaa
    11101 atttcatctt tacttataaa gagtaaagga cgtaaaagtg tataatttga tcgtttttca
    11161 tactcttgca tacctaaaat ttcagccaaa cctgcgcccc gtgaaagttg catcaaaaac
    11221 cattcaaact gatcatttaa atgatgggct aagataagat aatcataatc ttgctcaaga
    11281 caaatttttt caaaaaaatc atagcgaaaa tctctggctt ttttttcaaa attactttga
    11341 aatttaggag cctgttttat gaaaattttt ttatgaaatt tcaaagcaag ttctttggct
    11401 tttaactctt ctaaatcact attttttcta gttttataat ttatcatcac aagatcaaag
    11461 tcgatctttt cttgcattaa aagataaaaa agcgcactag aatcacttcc ataagaaaaa
    11521 gcgagtaaat ttttacccct ttttaaaagg gataaaattt catttttaat ttgcatctac
    11581 ttttcttaaa gccttagcaa ggagcttttt atcaaggttt tgtaaaattt cacattcata
    11641 aatttgcccc atttctaaat ttccacattc actttcattg ataagaattt ctccatcaat
    11701 ctctctatcc catcttagat ctttagctgc gatgaaaaac tctccctcgc tactttctcc
    11761 tgtgcaaact actaaacgct tttgccctac ttctttttca aaactttttt ctatcacttc
    11821 atcaacaatt ttttctatga ttttaagcct tttattgatc actttaaaag gcacttgctc
    11881 catatcaaaa gcagctgtat cttcttcctt ggaatacgca aaaacactca ctctatcaaa
    11941 accaaagtct ttaacaaatg cacaaagttc ttcaaaatcc gcctcactct cacctggatg
    12001 tcctacgata aagcccgtgc gtaaaaagct atttggcgca cttttcatta aatttagcat
    12061 ttctttaagt cttgtgctat ttgccccacg cttcatgatt ttaagcatat tatcacttat
    12121 atgctgcaaa ggcatatcaa aataatttac aaaaatttca gaagctataa tgcgtttgat
    12181 caaagcttca ctcgcactcg taggataaaa atataaaatt ctagccgctc ttataccttt
    12241 gattttttcc acctcatcga ttaagcgtat aagtccatct ttttcaccct tatcaaacaa
    12301 ataagaactt gtatcttgtg caataaaaga aaagtcctta taacctctag ctaccaaatc
    12361 tttaagctca gctacaatgc tacttatttc gcgagatttt aacttgcctt taaaacttgg
    12421 aatagcacaa aaagagcatt tttgattaca accttcggca atttttataa aagcatggga
    12481 atttgaacct gtgataatgc gtttggaatt ttcactctgt aaataagtcg aatttgaaaa
    12541 taaatttgtt tttttaagta tcatttcgtc gattctttca taatcaccca cacctgtgaa
    12601 aagatcaacc tcaggaagtt ctttcataag ttcttcgcgg taacgctgca tcaaacaacc
    12661 cgtaaccacc aaaagagaat ctttttttct ttgttcgtgc aaatccaaaa tcacattaat
    12721 actttctttt tttgcactat cgataaaacc acaggtattt acgattaaaa catcggcctt
    12781 atttggttca tcgcaaagct cataagcact aagacgtcct agcatgatct cactatcgac
    12841 taaattttta ttacaaccta aagacataag ataaagtttt gacatttttt tcctatatta
    12901 aagttttctt ttgatataat ttttgatttt aaaatataat tatagcaaag aaattttatg
    12961 gataattacg aatttagcga acttttaaaa actttaaaaa acaaagtcgg caacatagcc
    13021 tccatcatca agcctgaaaa tatccaaaca aggcttaaag aaatcgaaga gcttgaaaat
    13081 tctccttctt tttggagcga tgtaaaacaa gcagggatca taggcaaaga aaaaaccaaa
    13141 atcaccaatc tacttaaaaa ctatgaaaat gcttttaatg ccctaaatga cgcaagcgaa
    13201 ctttttgatc tggctaatag cgaaaacgat acagaaacgc ttgaagcttt atttaatgac
    13261 gcaccaaaac ttgaagatac catcacaagt cttgaaattt ccatgctttt aagcggggaa
    13321 aatgatggta aaaatgccat tgtttccatt cacccaggtg cgggtggaac ggaaagtaat
    13381 gactgggcaa gcatgcttta taggatgtat ttaagatttt gcgaaagaga gggttttaaa
    13441 gtcgaaactc tagactttca agaaggcgaa gaaacaggac ttaaagatgt gagttttttg
    13501 gttaaaggag aaaatgctta tggttattta aaagctgaaa atggcattca ccgtttggta
    13561 agaacttctc cttttgatag tgcaggacgc cgccatacaa gcttttcaag tgttatggta
    13621 agtcctgagc ttgatgatga tatagaaatt gaaattgaag aaaaagacat aagaatagat
    13681 tattacagag caagcggtgc aggcggacaa catgttaata aaacagaatc agccgtgaga
    13741 atcacacatt ttccaaccgg tatagtcgta caatgccaaa atgacagaag tcagcacaaa
    13801 aacaaagcca ccgcttttaa aatgctaaaa tctcgtcttt atgaacttga actcatgaaa
    13861 caacaagata gtgctaatac tggagaaaaa agcgagatag gctgggggca tcaaatccgt
    13921 tcttatgtgc ttttccctta tcagcaagtt aaagataatc gcagcggaga agctttttct
    13981 caagtggata atattcttga tggggatatc aaaaaaatga tagaaggcgt tttgattgct
    14041 ttaaaagcag agtaacaggc tttaaaaata agtaatttcc gcaaaatgtc agtataaaaa
    14101 ggaattagaa agatagcggg attttcccgc ttgttttatt atcttgcata aaacctaaga
    14161 gcatcattca cagaataata aactcttttc ttaaaatctt tatcgcaata aacactcaca
    14221 actttatagt ctttttatcg tttggattta ataagaaaac atagtttgag tatggagttt
    14281 tatctatttc taaatcacgc ttcatttctt taattttgcc ttctggattg ttaatatcac
    14341 taattgttct gactgaagta taatcataaa gtttataatt tggatatttt ttcataatct
    14401 cttgattacc taaatcaaac atagcttgat cgttgccatt gttttttaac tcgactaaat
    14461 cgccatcgcc acaatctaca atcaaagtca tagctcctaa agccaaagca cttgttaaaa
    14521 tctttttcat tatttttgct cctagtttta aaattaaatt aatataacta tacctaaatt
    14581 taaaatttaa atatcatttt tgcaataaat tctaaagtaa aaatcacgta aaaatttaac
    14641 tcataattat ttcattcaaa caaattttta tgcaaaattt cttctaaaac cacagtagca
    14701 taagagcctt tttgcaagaa aaactctata caaaaatgag ctttttcttc atcataacgc
    14761 cattttaact cttctaaata tccccacata aagcgtcttg aaccttgcat tttagcctta
    14821 aactccaaag tatctttaaa aatttcattt tctaaattta aggccaaacc ttctcctgtt
    14881 tcataagcct tagcaccgat taaaagcccc atggcgctta tatctcttgc cttaaaacgc
    14941 ccaagctcag cacttaaatc ctcgcataaa aaacactttc caaaaggata atgccctaaa
    15001 acctcacctt ttaaaagctt aaaaaattgt tcttgttttt taagttcctt agcttcttct
    15061 ttagaaattt tataaatttg gatcaattct ttttcgctaa aatcatttgc aaaatgtgat
    15121 aactccactc ttttactcaa atagcgatta aaaagctcac tttgaaaagc tgaaattaaa
    15181 aactctttca tttttacatt tttcattttt ttgccacgca aaatttcaag cccttcttta
    15241 taattatccc caaattttcc aaaacgctga taaccaaaat aattcgcaaa accttgttta
    15301 tccaaattca tcaaagcttg ttctagcttt aaagcatcgc ttggcaaaac tttttttaag
    15361 cgtatgaaaa aagaatttcc ttttaaatgc cctattctta gcttgttttc atgggtaaaa
    15421 atttctaaaa ttttaagttt agaatgagaa aaatttgaca aaaaactctc aaatttttta
    15481 ggcatagaaa ggtattgaaa ggttgatcct tgcttgtctt taagccctgc ataaccaaaa
    15541 tctcttattt taaccccgct tgcttcactt aaaattttta aagcttcatt tgtggttaaa
    15601 tcttttttat tgatatgcaa aataagatgt tcacccttgc cgctaaattc atacaaaggc
    15661 ttttcacgca ctacaaaatc atcgctattt ttactaaaat acgcattaat aggactatgt
    15721 tttaagctat acaaaggctt aaaaatggtg ttctcttccg ctaaattcat attttccttt
    15781 cactgctttt ccaaagatat ttaatttcac gccgtgtttt ttggctattg tttctatatt
    15841 ttgccgttct ttttcatcaa aagcaaacaa aatttcatat tcttctccgc tataaagcgt
    15901 ataatcatca agttttttaa accaagaaat accgcattta tttaaagcta aaagtcttga
    15961 taaatctttg cttaaaccat ctgaaatatc catagcacaa gaaattaaag gtgcgacttc
    16021 ataaaaaaaa ctagctctta attttggctt tataaataca tggtttggtt ttaaagtgcc
    16081 cccattttgt aaaatttcaa gcccttttaa acttcgccct aattttcctg tataagcaag
    16141 taaatgtcct ttttttaaac cttttctaaa aacggcttta tcgttaatct ttgaaatgat
    16201 agtaagacta atgtctattt tatcattgct tatagtatca ccgcctatga tttttatatt
    16261 aaatttccta gctgttttta aaaaaccttt ttgcaaggct ttgatctcat tttcgcttaa
    16321 attttttggt aaagcaagtc ctaaaagtgc gtattttggt acagcattca ttgaaatagc
    16381 atctgagata ttaacaagca ttgcttttgt agcaatttgc tctaagctaa accactctct
    16441 tttaaaatgc acattttcaa aaaacaaatc cttactaaaa caccaatcat caataatagc
    16501 tccatcatcg ccattttttt catttaaaaa agctttgata ataaaatctt ctttgttcat
    16561 aatgcgtgat tttataaaat ttccttttaa attctagtga attttagaat aattttatat
    16621 aatataaaaa tatttaagga aaaaccatga aaaaattaga attaagaatt tttagatttg
    16681 ataaaaccaa ggattatgag gcttattata aaccttatat ttatgataat tatgaaaatt
    16741 ttgcaagttt ttatgatctg cttttgcaag ttcaagatga tgatatttat tttgattttg
    16801 ataaagatga agatacttac atagttgtaa ataagcaaat cataccactt tttacacctt
    16861 tagaaaaaat agcaaaagaa tttgatttta gtctttgtat cgagccttta agcacaaaaa
    16921 gagccattaa agatcttatc atcgataaaa atgatttttt agacaaatac aaatatcttg
    16981 aaaaatttgg tgatgaagag gataaaaaac tttatgcaaa atatgattat ttatattatg
    17041 caagtgaaat tttagactat cttcctgaat atataggcga tggagtgttt tatttggctt
    17101 caaaaatgat agaaaaatat cctgaaaaaa agatagaaat tt
//
LOCUS       DARGEX010000028        16842 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.028, whole genome shotgun sequence.
ACCESSION   DARGEX010000028 DARGEX010000000
VERSION     DARGEX010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.028"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..585
                     /locus_tag="SF010_000725"
     CDS             <1..585
                     /locus_tag="SF010_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEG8229677.1"
                     /translation="FYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNP
                     HKEGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQH
                     SYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINL
                     GLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            582..1148
                     /locus_tag="SF010_000726"
     CDS             582..1148
                     /locus_tag="SF010_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG8229678.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMSEKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(1135..2007)
                     /locus_tag="SF010_000727"
     CDS             complement(1135..2007)
                     /locus_tag="SF010_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8229679.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
     gene            2102..2530
                     /locus_tag="SF010_000728"
     CDS             2102..2530
                     /locus_tag="SF010_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229680.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            2596..3852
                     /gene="murA"
                     /locus_tag="SF010_000729"
     CDS             2596..3852
                     /gene="murA"
                     /locus_tag="SF010_000729"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG8229681.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            3849..5009
                     /locus_tag="SF010_000730"
     CDS             3849..5009
                     /locus_tag="SF010_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8229682.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5031..5879)
                     /gene="lepB"
                     /locus_tag="SF010_000731"
     CDS             complement(5031..5879)
                     /gene="lepB"
                     /locus_tag="SF010_000731"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG8229683.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDKFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKNKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(5889..6737)
                     /gene="folD"
                     /locus_tag="SF010_000732"
     CDS             complement(5889..6737)
                     /gene="folD"
                     /locus_tag="SF010_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG8229684.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGAMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            6817..7164
                     /locus_tag="SF010_000733"
     CDS             6817..7164
                     /locus_tag="SF010_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229685.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            7161..8435
                     /gene="hemL"
                     /locus_tag="SF010_000734"
     CDS             7161..8435
                     /gene="hemL"
                     /locus_tag="SF010_000734"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG8229686.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            8432..8761
                     /locus_tag="SF010_000735"
     CDS             8432..8761
                     /locus_tag="SF010_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG8229687.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            8761..9264
                     /locus_tag="SF010_000736"
     CDS             8761..9264
                     /locus_tag="SF010_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229688.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSLLNHFKLDIFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKE
                     KIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKK
                     YESKKNY"
     gene            9242..10429
                     /locus_tag="SF010_000737"
     CDS             9242..10429
                     /locus_tag="SF010_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229689.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFIGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMTSLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            10422..12518
                     /locus_tag="SF010_000738"
     CDS             10422..12518
                     /locus_tag="SF010_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8229690.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATTFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETLADDAKTNIKQNVKNEENLPKKEVNANLDSSTK
                     THEENIKENPKFYETKTESKTSINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDT
                     RNMKNLDLEMGMDKKV"
     gene            12515..12796
                     /locus_tag="SF010_000739"
     CDS             12515..12796
                     /locus_tag="SF010_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG8229691.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(12793..13593)
                     /locus_tag="SF010_000740"
     CDS             complement(12793..13593)
                     /locus_tag="SF010_000740"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8229692.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(13590..14714)
                     /locus_tag="SF010_000741"
     CDS             complement(13590..14714)
                     /locus_tag="SF010_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8229693.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYASTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            14801..16096
                     /locus_tag="SF010_000742"
     CDS             14801..16096
                     /locus_tag="SF010_000742"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8229694.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            16099..16380
                     /locus_tag="SF010_000743"
     CDS             16099..16380
                     /locus_tag="SF010_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG8229695.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            16377..>16842
                     /locus_tag="SF010_000744"
     CDS             16377..>16842
                     /locus_tag="SF010_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8229696.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKE"
BASE COUNT         6413 a         2620 c         2362 g         5447 t
ORIGIN      
        1 ttttataatg ttttaaatca aaaaagttct tataaagaat atcaaaattt tacacttttt
       61 aaactcgatg aaaaaatttt ccacaaaaaa cactctttat tttataattt tcccctaccc
      121 tttaaaaatc cacataaaga aggaatttta aagcttattt tatacaaaga cggaagatac
      181 gaatttcaac aaagtgcctt aaagcaaaat tcaaacgata ttttgctttt aagtgatgat
      241 aaaattaact caaaaagtga caatctctat cacaaaagct ctttgcgtac tttttataat
      301 caacactcat acaaatggca gcaaaacttg tgttatgaca tagctttttt taacgaaaaa
      361 gatgaacttt gcgaaggctc aagaaccaat ctcatcttag aaaaaaactc tcaattttat
      421 actccacaaa ttcaaagcgg tatgttaaat ggagtatata gaaatttctt aatcaatctt
      481 ggtttgataa aagaaaaagc attatttaaa caagatttat ttgaagcaga aaatatttat
      541 tgtattaatt ccgtgcgtgg tttaaaaaag gtaaaattac aatgaagaaa attttattta
      601 tagataatta tgattctttt agttatacca tcatctatta tcttaaagaa cttggttttg
      661 aatgtaaagt gataaaaaat gatgccttta aaaaagctaa agaattagaa aaatttgatt
      721 tcactcatct tatcatctct cctggccctc attctcctaa ggaatctaaa ttaagcttaa
      781 aagcaatcaa atattttaaa aaaaataaaa aaattttagg tatatgttta ggacatcagt
      841 gtatagctga aatttttggc ggtagggttt ctaaaatgca aaatcccatg catggtaaaa
      901 tttctaaact ttattttaaa aaagatccta tttttaaggg tattaaaaaa gaaattgaaa
      961 tttgcttata tcattcttta cacattagtt ccatgtctga aaaatgcaaa attttagctc
     1021 ataattcaga aaatattatt atggcaatta aacataaaaa atatcctatt tatggattgc
     1081 aatttcaccc cgaagcggtt ttaactcaaa aaggcaaaaa aatacttaaa aactttatga
     1141 aactttagtc ttttttgcat ttaaaataac actcaatata atcaaaacaa aagcaaaaat
     1201 atcaagcaag ctataacggg tttttaaaaa taaaaaactc atcaaagcag ctgctacagg
     1261 ctctatagag gcaatcatac tagcccttag agcacctata tattccactc cttttaaata
     1321 caaacaaaaa gcccctatag ttccgataaa gacaatcccg cccatagaaa aaaatgcttt
     1381 taagttaaaa gcatagtgaa ttaaaccctt atcaaattgc aagattaata aaaatacaaa
     1441 agaagcaaaa agactcgccc agcccattat ccaaaaaaga ccatatttta atatcacttc
     1501 tctagcactt aaagaataaa aagcaactcc aaaagctcct ataacagccc aaaaaatacc
     1561 ccaataattt aaaaccaccg cttcaatatc tcctttagtt gcaagcaaaa acaaagcaaa
     1621 aataatcaaa atcaaagcaa aaatttctat caatttagga aattttttat ttttaaagca
     1681 caaataaagc attataatca aaggtgcaca atattgtatc attgttgcag ttccagcatc
     1741 ggtataataa atagccttaa aataaccaaa ttgtgttagc aaaagcccaa aaaatccaaa
     1801 catacaaata cttaagcttt cttttaaatt tgtaaaaact aaaatctttt gagctttaaa
     1861 acttaaaaaa atcaaaatca accctgtaga taaaagccta taaaaacaaa cccaatctac
     1921 gctataatta tttttaaaaa ggtattcagc taaaacaccg ctaatagccc aaaaaatacc
     1981 tcccaaaaga actaaaaata cgcccattgc aaaccttaat aaaaattatt ttaaattata
     2041 gtatattttt ttaaaataat gtcgatttag tgtaatatat attataaatt aaggagaaaa
     2101 tatgcaaatt aacaattcct taaatagctt aagtcaatat gttaaagtca actcaaacga
     2161 agaaaatcaa aactctaaaa atcaagaaca aaacgcttta gcgcaagatc cagctgtaga
     2221 ggtaaatatc agcaaagaag ccaaagaaaa atcaaatact tctaatcaaa acaattctca
     2281 agctccagct caagctttaa acgcacaaaa caacacgcaa caagatagta gcagcaatag
     2341 tgaagataaa cttacagaat taacacaaaa gcttgcagaa attcaagcaa aaattgttga
     2401 actaactgcg aaaatgtcta aagctaatga ggatcaaatc aaaagtattg aaagtcaaat
     2461 agcaacatta aatgcccaag cttcaactat tcaagctcaa attcaagaac tccaaagcca
     2521 acaagcttga ttatattttt tcaaaagttt aagaatgcta taatgatgca tttttaaact
     2581 ttttcaagga aaaatatgac ttatctagaa atcgaaggca caaatcatct aagcggaaat
     2641 gttacaataa gcggagcaaa aaatgctgcc ctacccttga tcgtttcaag tatacttgct
     2701 aaaaatgaag taaaaatcaa caatgttcct aatgttgctg atataaaaac tcttatatct
     2761 ttgctagaaa atttaggagc taaagtcaat tttcaaaaca atagtgcttt attaaacaca
     2821 aacactctta atcaaaccat agctaaatat gacattgtgc gtaaaatgcg tgcttctata
     2881 cttactctag ggcctttgct tgctcgtttt gggcattgtg aagtatcttt gcctggtgga
     2941 tgtgccatag gacaaagacc tattgattta catcttttag ccttagaaaa aatgggggca
     3001 aatatacaaa tcaaacaagg ctatgtcgta gctagtggaa atttaaaagg caatgaaatt
     3061 ctttttgata aaatcacggt tacaggtagt gaaaacatca tcatggcagc agctctagct
     3121 aaaggtaaaa ccaaactctt aaatgttgca aaagaacccg aagtagttca actttgcgaa
     3181 gttttaaaag acgcaggact tgaaattaaa ggcataggta cagatgaact tgaaatttat
     3241 ggtagcgatg gagaactttt agaatttaaa gaatttagcg ttatacctga tagaattgag
     3301 gcaggaactt atctttgtgc aggggctatt acaaattcta aaattacttt agataaagtt
     3361 aacgccactc atcttagtgc agttttagca aaacttcatc aaatgggttt tgaaactttg
     3421 attacagaag atagtatcac cctacttcct gctaaagaaa ttaaacctgt agaaatcatg
     3481 acaagtgaat atccaggctt tccaaccgat atgcaagcgc agtttatggc actagcttta
     3541 aaagctaatg gaactagtat tattgatgaa agactatttg aaaatcgttt catgcatgta
     3601 agtgaacttt taagaatggg tgcggatatt aaactcaatg gtcatattgc tactatagta
     3661 ggcggaaaag aacttaacgc tgctgatgtc atggctacag atttgcgcgc ttcttcagcc
     3721 cttatcttag cagctcttgc agctaaaggt acaagcaaag tccatagaat ttaccatctt
     3781 gataggggtt atgaaaattt agaagaaaaa tttaaagatt tgggtgcgaa aatcacaagg
     3841 cttgaagaat gaaaaatatc tttgaaacct taaaagactt agaaaatcaa atttcatgtt
     3901 tagatgaaag tgagcttatt agccttgaaa aagcaaagga tagaatttta gctaaagatt
     3961 tatacgctag aaaaaatcta cctagttttg acaatgctgc tcttgatggc tatgctttta
     4021 attatactga tatcaatgag gctttggaga ttaaagggac tatttttgca ggagataaaa
     4081 atttttatac agttgctaaa aatgaatgct ataaaatcat gacaggggct aaaatgccca
     4141 aaaatgctga tactatctta atgctagaag atgagtatat agaagaaaat aaactcatca
     4201 ttaaaaaagc tcctaaacaa tacaatgcct atcgctataa aggtgaagaa ttaaaaaaag
     4261 gtgaaatttt acttcaaaaa ggtaccaaac ttaatgataa acatatcgcc ctgcttgctt
     4321 ctcaagggct ttataaaata gaagtcataa gaaaaattcg cataggtatt ttttcaagtg
     4381 gaaatgagct aaaagaacct tggcaagaat gcgatgaaga aagtatttat aatgccaatg
     4441 ctttgccttt actaactatg cttcaaaatg cttcttattt gggtattatc aaagatgatt
     4501 ttaaaagcac taaagaggct ttagaaaata caaattttga tcttttaatc acttcaggag
     4561 gtgcaagcgt tggcgaggct gattttatgg aaaaagcttt agatgaatta ggctttactc
     4621 cgctttttaa aggtttaaaa gcacgccctg caagacctac taagctttat agaaaaggtg
     4681 aaaatttcgt attgatttta ccaggaaacc ctatggcagc ttatctttct tgttttattt
     4741 ttgctaaaaa aatcattaat ttattaagtg gaaacctaga caatccttta acattttatg
     4801 gcaaaatggg tatggattta aagcttaaaa gcggaagaaa taatctcatt ttaggaaatt
     4861 tagaaaaagg tatttttaca ccatttaacg aaaacaaatt tggctctggt atgatacttc
     4921 cacttattaa aagtgagttt ttgcttataa gcgaagaaaa tacgagtgaa ttaaaaaaag
     4981 gtgatgaaat cacgctttta aaaatataat gtttgtgttt ttcacaaaca ttagcttaat
     5041 ttatcctcat catcatgatc atggatatat tgctcatcat tttccaaggt atcaacaaaa
     5101 cgccctatcc tttcccagcg aacattttta tttttatccc aagagaaata tacaaaccaa
     5161 ggtttaccta ctatcaacct ataaggaaca gaaccccaaa aacgactatc ataagaataa
     5221 tcgcgattat cacccatcat gaaatactca ttttcaggta catcaaaaac ataagcattt
     5281 ccgccgctaa aacctatatg atttccaagt tctttaatat aagctggaga catggcaaaa
     5341 tcacctatgc taagaaagcg taaaatatcg ctttctatat ctttttttgg atcataatga
     5401 ataccttttt gtttataagg ttcttttaca taaatttgcc ctccaagagt aacaagatca
     5461 ttcggataat gttctttcat aaatttatca ccctcatgca ttcttacata aagtgtttta
     5521 tttgcataaa ctatcctatc tcctcctgtg cctacacaac gctttacaaa gtgttctttt
     5581 tcatttctag gatttctaaa aacaactata tctcctcttt gtggcccttg tgcttttatc
     5641 aaatgcccat ctttattaaa atccggcaaa acaggaattt ccaaccaagg aatatgagga
     5701 gttgggatac catagctaaa ttttttaaca aataaaaaat cccctactaa taaggtgttt
     5761 ttcatagaac cagaaggaat aacaaaagct tgtataaaga aaaaaatcac caaaagaaca
     5821 ataactacag ttccagtcca agactgtgaa aatttatata atttctttaa aatttccata
     5881 gattttccct aattaagtct atttttagca gatttaactg tgttttctaa aagcatggct
     5941 atagtcatag gacctactcc acctggaaca ggagttatat aactagattt tttagatacc
     6001 tcttcaaaat ctacatctcc aactatcttt ccactttcaa gacgattgat tccaacatca
     6061 acaacaatca ctccttcttt taccatatcc gatcgaagta aattcacaca acctgctgct
     6121 actataatca aatcagcttg cctagtataa aggctcaaat ctttggtttt aatatgacaa
     6181 acgcttactg tagctccagc atttaaaagc atagtagcca taggacgacc tactatattt
     6241 gaagcaccta taataacagc gtcttttcct tctaaatcaa tttcataagc cttcaaaagc
     6301 ttcatagctc caagtggagt acaaggcaaa aacccacttt ctaagcctaa atttaaatat
     6361 cctacattaa taggatgaaa gccatcaaca tctttactac ttataatact ttcaagtatt
     6421 aaatctttac aaatatgatc aggtaaggga agctgaacca aaattccatg aacactatca
     6481 tcgtgattta aggtattaat caatgccaaa agttcatttt gtgtagtatt ttcattaaga
     6541 tgataaacta aagatttaat tccacattct tcacaggctt tagccttaga ttttacataa
     6601 gtttgacttg caggattatc tccaaccaag ataacagcta aacagctttc aatccctttg
     6661 cttttcaaaa attgattttt ttcttttaat tcttctttga tttttgcgct taaagcttta
     6721 ccatcaagca aagtcattat tttccttcta taaatttaat cactttttta aagtaaaaat
     6781 tgtatcatat taaaacttca ttaacaaggt gaaactttga aaattgtttt aatgtttttt
     6841 ttatttagta ttagtctttt tggtgctgat tttatcactc ttaaagaata ctctaaaatg
     6901 ctttatgaaa atccaagggg cattagttgt aaagaatgtc atggagcaga tggaagcgaa
     6961 caaattttag gatattatat gaaaaatggt attaaaacag cttataaagt tccaagtata
     7021 caaaatctta gttttgaaaa ttttaaaaat tctcttaatc agagtaaaga cgcaaaatca
     7081 atcatgccaa attactcttt aacaaatgat gaaattgtaa ctttatataa ttacatcaag
     7141 caatttagca aggaagaaaa atgacaaaca aaaaagcttt taaagaagcg tgtaaattca
     7201 tcgcaggtgg tgtaaattct ccagttcgtg cttttgcaaa tgttcaaagt gagccaaaat
     7261 ttatttctca tggaaaaggt gcttatattt tcgatataga tggaaattct tatatagact
     7321 atgttcaaag ctgggggcct ttgctttttg gacattgcga taaagatata caaaaagctt
     7381 gtcaaaaagc acttcataaa ggttcaagtt ttggagctcc aactttatta gaaactgaac
     7441 ttgccaagct tgttttatct gattttcctc atttagaaaa gatccgcttt gtaagcagtg
     7501 gaacagaagc aaccatgagt gctattcgtc ttgcccgtgg ttttactaaa aaagataaaa
     7561 ttttaaaatt tgaaggatgt tatcacgggc attctgattc attattagtg agtgcaggaa
     7621 gtggtgctgc tacttttaac tctcctagtt ctttgggtgt tttagaagat gtagctaaac
     7681 acactttagt agctaaatat aatgatataa atagcgttaa agagcttttt gaaaaaaata
     7741 aagatattgc atgtgttatc attgagccta ttgctggaaa tatggggtta gttccagcta
     7801 aacaagattt tttagaagaa cttgctaaga tctgtaaaaa caatcaaact ctgctgattt
     7861 ttgatgaagt aatgagtgga tatagagcat cttaccttgg ttcctatgga atcaatcata
     7921 tccaagcaga tataattact tttggtaagg taataggagg cggtctacct gcagcagcat
     7981 ttgcttctag agctgaaatt atggatattt taagtccttt gggtggagtt tatcaagcag
     8041 gaactttaag tggaaatcct ttggcaatgg ctgcaggtat agcaagtctt acaaaagcca
     8101 aaaagaaaac caagctttat gacaaacttg gaaaattagc aaaaaaactt acacaaggaa
     8161 tgaaaaaatt agcagatgaa aaaggacttc cgctgcaagc ttgtcatgta ggttctatgt
     8221 ttggatactt tttcaccaaa gatcctgtat caaactacca agatgcatta aaatctgatc
     8281 tagcattatt ttcaaaattt cacaaaaata tgcttgaaaa tggaatttat ttagcacctt
     8341 ctcaatttga aacaggcttt atatgttcaa aaatggatga taaaattata gatacaacat
     8401 tagaggctgt tagggaaagc tttaaaagaa tatgagcaat attttaaaag aagaaaaaaa
     8461 tcacttagaa aattccaaca gcaaaagaca aaaaatcatt cgcaaaactc ttgaagctgc
     8521 ggatggttta agtcttggca tctctatggt tgttgctgta tttataggtg tgggaatagg
     8581 atatttactt aaaaaattta ctccttatcc ttggcttttt tggcttggag ttttttgggg
     8641 gatcagtgct gctatactta atgtttacaa agcttataaa gttcaagtaa aaagctatga
     8701 agaatttaaa gaaagagatg agttgatcaa agaaaaaatt caaaaagaaa agaacaaata
     8761 atggaacata aaaaagctct attttgtatt tttgccatta ttcatttatt tttttggatc
     8821 atattttcat tgttaaatca ttttaaatta gatatatttt taagctatga aatagctttt
     8881 tttagtgttt tattgattat ttttgcttct tatttaaatt ataaaaaagt cattataaaa
     8941 aaatcaaaaa attatgaaaa agattttaat ttcatttcat cactttttat caaaaaaaaa
     9001 caaaatttat caaaaattat tcattttaaa gttctaaaag acgatttaaa gccaaatgtt
     9061 aaagagaaaa tccatttttt tgctatgttt tttactctct ttaaattgat ggcttatgta
     9121 atattggttg ctggattttt atttttacat cgccaagata aattagatat ctttgcttat
     9181 atttgtggaa tttcatcctt gctagtttgt gtgtttattt ttattttata tataaaaaag
     9241 tatgagtcca aaaaaaatta ttaaatcaat gacagcactt tttgctggta tggcattttt
     9301 atttgcaggt aatgccttga tagtaagctc tataggtgtt atattaaaag aaaacggaga
     9361 aagttcttta gctgttggag tggtaagttc ttgttttttt ataggcgctc ttgttggaac
     9421 catcagtgct cataaaatta tttctcgtat aggtcatata cgctcttttg ggctatttgg
     9481 tgctattttt ggaatttcag ctatgcttca tacagtaagc gaaaatctta ttttttgggc
     9541 tgttttaaga tttttcatag gaatttgcta ctatggactt ttaatggtca tagaatcatg
     9601 gcttaatgaa aaaagcaaaa atgccattcg atctagaatt ttaggttttt atgaaattgt
     9661 tttttatctt gcgtttggta ttggagtttt aatcatagcg ttaaatttaa gcaaacatag
     9721 tgtatttatc ctcagtgcaa ctttaatttt actttcatct ttacctttaa atctaattaa
     9781 aatcaaagaa cctgttttac ccgcatcaag tcctatttct atacctaaaa tttttgatat
     9841 agctccttta gctatcgtca caagctttat agccggaatg cttataaatg gctttttttc
     9901 tatgacatct ttatttatac ttttgcaagg ttttgataca aaagcggttt cttattttat
     9961 attttgtggg gttttaggtg gttttattgc acaaaccatc ataggaacta tttcagacaa
    10021 acttggtcgc aaatttgcca ttatcacttg tgcaagtata ggatttatca ctatgcttat
    10081 atttatcttt tttaaacttc atttatatat gcaatatttt ttaggaatta ctcttggtat
    10141 aggaatattt tgcttatatg ctttagcact tgctagagca aatgatgttt tagtaagcaa
    10201 aaataaaggt gtagagttag gtcgtggggt tcttttttgt tattctttgg gctctttgtt
    10261 tggcccttta attttaggtt ttttaatgca atattttgaa atcaaaggtt ttatatggtt
    10321 ttatatagtt tctttagcat ttttaattct ttttgctatc aataaaccaa atattttaaa
    10381 taaaaaattt aagaaaaagc ctggaaatat ggtgatattt gatgattaat actcaactag
    10441 caagtcaaat tgccaatacg caaaaaaatg atttaaaagt agataactct gcttcaaaag
    10501 ataaaacaaa tttaaaagac aatccaaaag aagcacttgc acaagcttta aagcaaaatt
    10561 taggtttaag caaggacgct agtagcgagg aaatactagc aaaatttgtt caaaatgaaa
    10621 caggtaccaa attaaaagaa cttgttaata aacttttaga tcaaatcaat gctcaaaaaa
    10681 atcccgattc ccctgtactt aaacaaggaa aaaatttaaa tttagctcct aattttgcta
    10741 atgaattaaa aatcttaagt acagaacttg caaaaagtga tacttttaca caagttttag
    10801 acagattaaa tcaaatttta aaacctgcca gtgaaataaa aaacaataac ttagctcctt
    10861 tgtttaaaaa ttcaggcgta tttttagaag ctaaattaaa agatgcccta aacgaagaat
    10921 tactacccaa aagttttcac tctcttttaa gtacaatcaa aggtcttagt agcgaaaaac
    10981 taagcgttca gatagcccag cttgcaaata caaatttaag cccaaaagac actttaaaag
    11041 aattaaaaaa tattattaat tctagcaaaa atgaaaataa gcaaatttta aatcaaagtt
    11101 cttttaaagc acttttaaat ttaagttcta aattggaaaa ttttaaaaat tatataagta
    11161 aaaatcccag tcatgctcaa gaaaaaatca cccctatagc taataaaatt ttaaaagaat
    11221 taaattccat caaaaatgat tttttcaaag ctcttaataa gccagaaaat ttaatgataa
    11281 aagatccaaa catccttaag caaactgcta ccacctttga aaaacttgaa aatactttaa
    11341 aaaatatact aggcaatcaa gcttctaaaa tacaagataa agaaaatatt ttagaaaatc
    11401 ttttaagtaa caaagaaaat atcaaagaag aaaaacttaa tcataacaca aaaaaccaag
    11461 atgaagaaaa atatataaaa gtatcaaaag aagaaactct cgcagatgat gctaaaacca
    11521 atattaagca aaatgtaaaa aacgaagaaa atttacctaa aaaagaagtt aatgcaaatt
    11581 tagattctag cacaaaaact cacgaagaaa atatcaaaga aaatccaaaa ttttatgaaa
    11641 caaaaacaga aagcaaaact tcaatcaata caaatactaa cacaaacaac acgcaaaatt
    11701 taaataattc tcaaaatatt caatctaaca ataaccaaac tatgcaaaat atttttaaaa
    11761 atcaggaatt tataaaacaa aatattgtaa aaaatttagc atttaatgta gaaaatttag
    11821 atctagaaca agtgcaagat ttaagtaaaa atttaagcaa tctttctcgt agacttaatg
    11881 aaagcttaaa agaacttgaa ccctatactc aaaatgccaa gcttaatcaa gcagaactta
    11941 aaaatctcga acacaaactc aatctttcta tcaaagatct agtgcaaatt aaaccaaaaa
    12001 cagaacaaga tatagctgaa tctttacatc atgatgtaaa atcaacactt ttgcaaattt
    12061 caaatttggc taaaaatgaa ggcaatgaag ctgtatacaa tcaagctaat cgtcttttag
    12121 cgcaaattga aatcaatcag cttatgtctt tagctaatga ttctatcaat acttatctgc
    12181 ctttttcttg ggatgattta aatgattcta aaattatgtt tagacgcgga aaaaaggaca
    12241 aattttttgc tcagattaaa ctcgaatttg caaaacttgg ggatttagaa attcttattt
    12301 ctttaaataa tgaaaaatat atagatatta atattatggc agaaaatatt gaatttagaa
    12361 aaaccatcta tgaaaatgcc catgagctta aaagaaatat caataaagca ggacttttaa
    12421 gtgcaaattt ctttgtaggt gatatcataa gaagtaaatt tgatactaga aatatgaaaa
    12481 atttagatct tgaaatgggt atggataaaa aagtatgagc aaaatcaaaa gatcgattaa
    12541 aaaagctgta gctctaggct atcaaaaaga aaaaaactct gcaccaaaag tgcttgcaag
    12601 tggcaaaggc gaaagtgctg ctaaaattat ttctttagcc aaggaacacg gagttcctat
    12661 taaagaagat gaagatttaa tagaaatttt aagcaagctt gacttaggtg atgaaattcc
    12721 acctaatatg tataaagctg tagctgaagt ttttgccttt atctatcaaa tggcaaataa
    12781 aactcctaaa aactaatccg ctattttttc tccaaattta ataccctgcc ctacttttaa
    12841 attaaaagtt aaaagtcctt tttgagagat taaaactata gtagaaccta gctcaaaatt
    12901 tcctagttct tcgccttttt tgaaatttaa attttcatat tttctagtaa aattatgaga
    12961 aattttagca ttggtttgta tgcttgcatc aaaattaaaa cgcatttttc ctacattttg
    13021 cgctcctaca aaaacaagcc aaaaaatacc tttttcattt tgacatttca agctcactct
    13081 ttcatttttt acatataaat tactaatgcg ttctaaatgt ttttcattta cgctataaag
    13141 cactccactt gtgtaagttg cacttaaaat ttgcatatca caagggctgt gataacgatg
    13201 ataatctttt ggagaaagat aaatattgac ataatcaagc ccatttttaa gctcatcttt
    13261 ttcaaagcta tcttttaaaa gctcctcaat gctataagta tgtcctttta tagaaaaagc
    13321 aaaatgttct tcatttgcca aaaaagtact tccacactct aaaattttac catcacttgg
    13381 actgataaaa ccttcttcaa gctttcttgg aatttgcaaa gttcttgtaa aaagagcatt
    13441 taaactctcg tattcacaag ggcttttaaa ttcactcata tcgatattaa aatacttaac
    13501 ataattttca ttaataactt tttgtatcat tttaggaaat ttaatccccg ctacaaaacc
    13561 aaaaagtctc gaactttctt ttgaaaaact catttttttc cttttaaatt taaaatcact
    13621 atttcactcg gagcaaaaac tctaagactt ggcccccaaa atcctgctcc actactcaca
    13681 taaagcttag ttttttctcc taaatcataa agcccatgaa caaaaccttg ctgaagttta
    13741 actaaaaaca taaaagggaa aatttgccct ccatgtgtat gcccacttaa aacaagatca
    13801 aaatcactta aatcataaag caaagctgtt ttaggttgat gtgtgagtaa aatactagct
    13861 ttacttgtat ttaaatccac ttttattctt gctaaatcag gagcatataa acccctatca
    13921 agtccggcta aatctccaag tccagcaata tttataaaac ccaaatctaa attttgattg
    13981 actaaaattt tcatattagt atgttttcta agcaaatcca aaacttcatt gataccatga
    14041 taatactcat gatttcccaa agcataaaaa gttccgtaag tggagttaaa atcattaagt
    14101 tttgagatgt aattttttaa atctttagga ttagtatcaa tcagatcccc tactattaca
    14161 accatatcag gactttgcaa attcacttta gtgatgagct tgtctaaaaa attttcatgc
    14221 aaatttttac ccaaatgtat atcagtaagc atgacaattt ttaaatcttt tttaagattt
    14281 ggtatttcaa catcaacact ctttacttca ggtgttttta gagcattatt tatacttaca
    14341 taaattaaaa acacacttaa aactataaga gaaagttcaa aaatcaaacg caaaataaga
    14401 ttatatgttt tatctctttt acccataaga gctaaaatca atttaacaaa atcccatgct
    14461 aaagtcataa aaaacaaaca ataagtcgac gcataaaaca tggctaaaat ttcataccaa
    14521 gtatcactta aatattcatc tctacgaaat attaaaaaca cagcttgagc taaaaaaagc
    14581 acaataaaaa taaaggaaaa aattttataa aaatacttaa aaagagtaat tttcttgatt
    14641 aatcttttat aaatataaac atttgctaag ccaaaaatta ataacacaat gaaagaaaaa
    14701 attaaaaata tcatacaaag tattataacc aagtaaaatt aaatatccgt ataaattttt
    14761 ctgttataat aagcttttaa ataattttaa aggctataag atgtaccgtt ttgcaccttc
    14821 tcccacaggt gatatgcaca taggaaattt acgcgcagca atttttaatt atatctgtgc
    14881 aagacaaaaa aatatggatt ttatcttacg tattgaagat actgataagg ctagaaatat
    14941 agcaggaaaa gaagaagaaa tcaaagaaat tttaaatctt tttagtattt catggcagca
    15001 ttactatata caaagtgaaa atttaaaatt ccatcgccaa atggctttaa aacttgtaag
    15061 cgaaaaaaaa gcttttgctt gtttttgcag cgaagaagaa cttgaagcaa aaaaagagct
    15121 ggctaaaaaa caaggtaaag cttatcgcta cgatggcact tgtgaaaaac tagccgatat
    15181 tgatgtttta gaatgtgaaa aaccctttgt tatccgtctt aaaaaaccta ctcatactat
    15241 gaaatttact gattttatca aaggcgagct tagttttgag cctgaaaaca tagactcttt
    15301 tgtgattatg agaacggata aaactccaac ttataatttt gcttgtgcgg ttgatgatat
    15361 gcttgaaaat gtcacttgta ttatacgcgg agaagatcat gtttcaaaca ctccaaaaca
    15421 agaacatatc cgcgcaagct taggttataa taaagccatg acttatgcac acttgcctat
    15481 cattttaaac gaagaaggtg ttaaaatgag taaaagagaa gcacattctt ctgtaaaatg
    15541 gctacttgaa agtggaattt tacctagcgc aatcgcaaat tatcttgtca tactaggcaa
    15601 taaaactcct tgtgaaattt ttaccttaga agaggctata aaatggtttg atatttctaa
    15661 agtttcaaaa gctcccgcaa gatttgatct taaaaaactt ttgcaaatta atcgcgaaca
    15721 tatcaaaatg ataaaagatg atgagcttaa taaaatttta gatttaaaca aagatcttgc
    15781 accacttgct aaattttaca ctcaagaagc aagtactata aaagaactta aagaaaaaat
    15841 gcaagctatt tttaacgcaa aaaattttgg cgagtttgaa acagaatgta aaattttaaa
    15901 agaactctta aaagatattg aactttttga aaattatgaa gattttaaaa atgaactttt
    15961 aaacaaaagc aacttaaaag gtaaaaaatt tttcatgcct ttaaggataa ttttaacagg
    16021 aaatatccac ggacctgagc ttagcgatct ttatccttat attaaaaatt ttattcacga
    16081 attagcaagg atttaactat ggttatagac tcttttatta tttctatttt tcaagtacta
    16141 caaattgtca ttaacattta tacttggatt attatcatca cagcacttct aagctgggta
    16201 aaccctgatc cttataatcc tatagtgcaa attttatata aactaagcta ccctgcttac
    16261 gccttagtta gaaaaattcc aacacgcatt ggtaatattg atcttgcgcc tttgattata
    16321 gtcttagcat tgcagtttct tggcattttt cttgggaata tcttaaggag tatattgtga
    16381 taaaaaaaat actcgttttt ttatttattt tttcaagttt aaatgctaca caatatagta
    16441 tagaaaaact caaaaaggaa gaaaattcac ttgctaagga ttattatatt tataggcttt
    16501 tagaaaaaaa taaaatcagt aaaaaagatg cacaggattt aaattctcat atttttcgct
    16561 atataggaaa aattaaatct gaacttgaaa aaatcatccc tttaaagcct tatatcaacc
    16621 caaaatatgc taaatgctat acctatacag caaatactat cttagatgca aatttaactt
    16681 gtcaaagtgt gcgcttaaat tcattagttt ttatagcgag tctaaattcc aaagaccgaa
    16741 ctactttagt tcaaaccttt aaaaatcaaa gacctgattt gacaaattta ttgctagctt
    16801 ttaatacttc tgatcctatg agctatatag tacaaaaaga ag
//
LOCUS       DARGEX010000029        16820 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.029, whole genome shotgun sequence.
ACCESSION   DARGEX010000029 DARGEX010000000
VERSION     DARGEX010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16820
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.029"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..571
                     /locus_tag="SF010_000745"
     CDS             <1..571
                     /locus_tag="SF010_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEG8229697.1"
                     /translation="IELGCNIKNENNIFEIIKKHMKNIRNLTNQTCQMGILKDGNVLY
                     LEKIDANNTVQLKSFIGTSYPAYATSLGKALLSNKNKKELEKLYPKNFDKITENTLNN
                     INELYQQIKQIKKEKIAIEIGEMNPQIECMAIGIEHKNKIIAAISISYLIYCSNKAFR
                     EKNKKILLEEKNKIEKVLKIYFNDLDTLY"
     gene            complement(602..5155)
                     /gene="rpoC"
                     /locus_tag="SF010_000746"
     CDS             complement(602..5155)
                     /gene="rpoC"
                     /locus_tag="SF010_000746"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG8229698.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5148..9284)
                     /gene="rpoB"
                     /locus_tag="SF010_000747"
     CDS             complement(5148..9284)
                     /gene="rpoB"
                     /locus_tag="SF010_000747"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG8229699.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9393..9770)
                     /gene="rplL"
                     /locus_tag="SF010_000748"
     CDS             complement(9393..9770)
                     /gene="rplL"
                     /locus_tag="SF010_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG8229700.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9791..10270)
                     /locus_tag="SF010_000749"
     CDS             complement(9791..10270)
                     /locus_tag="SF010_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG8229701.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10422..11123)
                     /locus_tag="SF010_000750"
     CDS             complement(10422..11123)
                     /locus_tag="SF010_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG8229702.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11179..11604)
                     /gene="rplK"
                     /locus_tag="SF010_000751"
     CDS             complement(11179..11604)
                     /gene="rplK"
                     /locus_tag="SF010_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG8229703.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11630..12163)
                     /gene="nusG"
                     /locus_tag="SF010_000752"
     CDS             complement(11630..12163)
                     /gene="nusG"
                     /locus_tag="SF010_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG8229704.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12173..12352)
                     /gene="secE"
                     /locus_tag="SF010_000753"
     CDS             complement(12173..12352)
                     /gene="secE"
                     /locus_tag="SF010_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG8229705.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12371..12446)
                     /locus_tag="SF010_000754"
     tRNA            complement(12371..12446)
                     /locus_tag="SF010_000754"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12411..12413),aa:Trp,seq:cca)
     gene            complement(12459..12617)
                     /gene="rpmG"
                     /locus_tag="SF010_000755"
     CDS             complement(12459..12617)
                     /gene="rpmG"
                     /locus_tag="SF010_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG8229706.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12670..13869)
                     /gene="tuf"
                     /locus_tag="SF010_000756"
     CDS             complement(12670..13869)
                     /gene="tuf"
                     /locus_tag="SF010_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG8229707.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13938..14012)
                     /locus_tag="SF010_000757"
     tRNA            complement(13938..14012)
                     /locus_tag="SF010_000757"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13978..13980),aa:Thr,seq:ggt)
     gene            complement(14117..14193)
                     /locus_tag="SF010_000758"
     tRNA            complement(14117..14193)
                     /locus_tag="SF010_000758"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14157..14159),aa:Gly,seq:tcc)
     gene            complement(14200..14285)
                     /locus_tag="SF010_000759"
     tRNA            complement(14200..14285)
                     /locus_tag="SF010_000759"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14249..14251),aa:Tyr,seq:gta)
     gene            complement(14335..14410)
                     /locus_tag="SF010_000760"
     tRNA            complement(14335..14410)
                     /locus_tag="SF010_000760"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14375..14377),aa:Thr,seq:tgt)
     gene            complement(14526..15263)
                     /locus_tag="SF010_000761"
     CDS             complement(14526..15263)
                     /locus_tag="SF010_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8229708.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKDKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDKVLQEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(15265..15921)
                     /locus_tag="SF010_000762"
     CDS             complement(15265..15921)
                     /locus_tag="SF010_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8229709.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISTIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWFFVVYFGFPRWFGWDLSSVSVAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15914..16615)
                     /locus_tag="SF010_000763"
     CDS             complement(15914..16615)
                     /locus_tag="SF010_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8229710.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLYA"
     gene            complement(16630..>16820)
                     /gene="nssR"
                     /locus_tag="SF010_000764"
     CDS             complement(16630..>16820)
                     /gene="nssR"
                     /locus_tag="SF010_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEG8229711.1"
                     /translation="KYLLENEKKLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDT
                     KKGKIEILNKDMIIKELW"
BASE COUNT         5344 a         3391 c         2231 g         5854 t
ORIGIN      
        1 tatagaatta ggatgtaata taaaaaatga aaataatatt tttgaaataa tcaaaaagca
       61 tatgaaaaat ataagaaatt taaccaatca aacttgtcaa atgggaattt taaaagatgg
      121 aaatgtgctt tatttagaaa aaattgatgc taataataca gtacaattaa aatcttttat
      181 aggcacttcg tatcctgctt atgcaacatc tttaggcaaa gccttactat caaataaaaa
      241 taaaaaggaa ttagaaaaac tttatcctaa aaattttgat aaaattacag aaaacacctt
      301 aaataatata aatgaactct atcaacaaat caaacaaatt aaaaaagaaa aaattgccat
      361 agaaattgga gaaatgaatc ctcaaattga atgtatggct ataggcatag aacataaaaa
      421 taaaataatt gctgccatta gtatatctta tctaatttat tgctctaata aagcttttag
      481 agaaaaaaat aaaaaaatac ttctagaaga aaaaaataaa atagaaaaag ttttaaaaat
      541 ttattttaat gatttagata cactgtatta atatagcccc gaagggctat aaaatagagt
      601 tttattcttg ttctttaagt tttaaatttt gttcgccata aagccctgtt ccaacaggaa
      661 tcattctacc tagaataaca ttttctttta aatcttctaa gtagtcaaat ttacctgcta
      721 tacttgcttc agttaaaact ttggtagttt cttggaatga agccgcagaa atcacactat
      781 cacttccaat cgctgctctt gttacaccta aaagcacagg ctcggcaata gctggttctc
      841 cacccattct aatgattctt tcattttctt cacggaattt acgtcttgaa accaaatcac
      901 cttcaataaa tttcgtatgt ccactatcta caacttttac ttgtcttagc atttgagaaa
      961 cgataacttc tatatgttta tcagaaatca caacaccttg tccgcgataa acttgctgaa
     1021 tttcagaaat caaataataa tgcaaggctt tttcacctaa aattttaagc acatcatgac
     1081 tcgaaacaac tccatctgta agtttttcac ctgcatgaat aaactctcca tctcttactt
     1141 gaatatgttt tgatttgtcg attaaatact cagcacttgt tccatcttct gcttggataa
     1201 taattctttc tttagaacgc aaaggcttat caaaacgaac aacaccatca atttctgcaa
     1261 tcacagccgc attttttggt tttcttgctt caaaaagttc agaaactctt ggaagacctc
     1321 ctgtaatatc ctttgattta gctgctgctt ttggagtttt tgctaaaata tctgcttgag
     1381 caattttatc gccatcatga acaaaaataa cggtttttgg ttcaaggtga taacgcacag
     1441 ctttatcacc ttttcctgca attaccaaag ttggtctaac tccgctaggt aaatactcat
     1501 taattactaa agaacgctta cctgtagctt catcaatttg ctcatcagca ctataacctg
     1561 cttcaatatc ctcaaagctt acaacaccat caatttctgc aatgatagta ttattataag
     1621 catcccattc tgcaatcact tttctttctt ttttaggagc acttgcaatg atagtatttg
     1681 cgtcatcgat tttttcacta tcgttaaatt ctatcttaga ttctcttggg atatagtgtc
     1741 tttttgcttc tctatcattt tcatcagcaa tcactacaaa gaatcctttt tctttaacaa
     1801 tatcaccttt tttaacattt tttactctat ctaaaccatc gcctttaagg atgtaaaatt
     1861 tgagtgttcc tttttcgcct gctttgatat tttgaactac aggctcgcca tcttctacta
     1921 aaatttcact cgcaaaagga atacgatttg gtacattcca accctcttta atcacttcta
     1981 cgatactttc attttcttct acttgcatgc cgctttgata tggcaaataa agttttccat
     2041 ctatactgcc acttacacct gctaattcat ttggtttagc aagatcgtat tttcttaata
     2101 tgtattttac ttcttgtttt ttatctttaa tagaaacaat cacatcttca tgaatatttt
     2161 ctatattaat cacaccttta aatggagttt tgatttttgg ctccacaagt aaaaccgccg
     2221 catttctacg atttgctacg atatttttac cttctttgtt tttataagtt ttaagattat
     2281 aaaatcttat aaaaccttct ttttgtgcgc ttacttgtct atcttgtaaa tccgtacttg
     2341 cagttccccc gctatggaaa gttcttagag ttagctgcgt tcctggttca ccgatagatt
     2401 gagcggaaat aattcccact gcttcgcctg gttttactaa tttaccttca ccaagattga
     2461 taccataaca ttttgcacaa attccttttt tagctttgca ggtaatagga gtgcggatat
     2521 tgacactttt tataccgctt tcgccaagaa tttttgcttt ttcctcatcc attaaagtac
     2581 cttctgcaaa aagcacagaa tttgtaatag gatcaatcac atcctcagct aaaaccctgc
     2641 ctaaaattct ttcttctaaa gtttctataa tagaactatc tgcggtaatt tcattgattt
     2701 caacaccctc atgtgttcca caatcttcaa tggtaatttt tacattttgt gcaacatcga
     2761 tgagttttct tgtcaaataa cccgcatttg ctgttttaag agcggtatct gcaagacctt
     2821 ttctagcacc gtgagttgaa ataaagtatt caagaacatt tagcccttca cggaaatttg
     2881 aaataatagg cgtttcgata atagaaccat caggtttggt cataagtcct ctcatcgcag
     2941 caagctgaga aatttgagct gcactacccc tagcaccaga atctgccatc atataaatag
     3001 agttaaaacc ttctttatct ttttctacaa gcttcatcat ttcttttgaa agaacattgt
     3061 ttgtactttt ccaaatatca atgattttat tgtatctttc ccctgaagta atcaaaccga
     3121 gattataaga attttgaatt tctcttactt gtttttttgc ttcatcgata gctttttgtt
     3181 tatcattagg aacaataata tctgcaatcg aaattgaaat acctgcttta gttgcatatt
     3241 caaaacctaa atttttaagt ctatccaaga aacttgctgt aatctctaaa ccaccttgtt
     3301 tataaacata atccacaagc gcagcaatgt cttttttctt taagacttta ttccaactat
     3361 tttcaggcac aaaatcaggc aagatggatt taacaatcaa tcttcctgct gtagtggtaa
     3421 tctttctacc atctaccata gtttgtatgc tcgcatgaat atccaaacac ttgctttcaa
     3481 gtgccatcat cacttcatca atgcctgtac aaattttatg cgaaccttta gcacctgctt
     3541 tttccaacga aagataataa attcctaaaa ccatatcttg cgatggaacg gttacagact
     3601 taccgcttgc tggtaaaaga atattcattg atgaaagcat aagcacttta cattctgcaa
     3661 tagcctcttg agaaagcggt acatgcactg ccatttgatc cccatcaaag tctgcgttaa
     3721 atgctgcaca aaccaaagga tgaagttgta tagccttacc ttccactaaa acaggatgaa
     3781 aagcttggat agaaagctta tgcaaagtag gtgcacggtt tagcataaca ggatgtccct
     3841 ttactacctc ttctaaacat tcccaaactt cattggtttt attttctatc atttttttag
     3901 cttgttttac tgtggttgca taaccttttt cttcaagctt agctaaaaga tgtggcttaa
     3961 aaagctctaa agccattttt ttaggtaaac cgcattgatc cattctaagt tttggaccta
     4021 caacaataac gctacgacct gagaaatcca cccttttacc tagtagattt tgtctaaaac
     4081 gtccttgttt ccctttgatg atttcactta aagatttcaa tgggcgttta tttgctcctt
     4141 ttacagcatt agcacgacga ccgttgtcaa aaagcgcatc aacagcctct tgaagcattc
     4201 ttttttcatt tctgataatg atttcaggtg catcaagttc cataagtttt ttaagacgtg
     4261 tatttctatt gataacacga cgatataagt cattcacatc agaaactgca aatttcccac
     4321 catctaaagc cactaaagga cgcaaatctg gcggtaaaac tggaagattt gtaatcatca
     4381 tccattcagg acgatttggt acagcttcgt cgctatcggt attggcgttt aaatttgaat
     4441 ttaagaaatt ttctacaact tttaagcgtt taatgatagt ttttttctta gcctctgaat
     4501 ttgtagcccc catttcttct ttaagttgat ttaaaagcgc tacaagatct aaatttgcaa
     4561 gtaaatcacg aacaacttct ccacccattc ttgctttaaa gccgctattt tcatagcgtt
     4621 gcattaaatt ttgatattgc tcttcgttca aaacatcgca atattccact tttttagtac
     4681 tttcattatc atagaaagca tcacctgggt tttcaacaat ataagcttca taataaagca
     4741 cgcgctcaag atctttcatc ttaacaccca aaagcgttcc tatacggctt ggaagagaat
     4801 taacatacca aatatgagcc acaggagtta caagctcgat atgccccatt ctagaacgac
     4861 gcacttttga atttgctact tcaacaccac atttttcaca cttaacgcct ttaaaacgca
     4921 tttttttgta tttaccgcaa agacactcat aatctcttat aggtccaaaa atctttgcac
     4981 aaaaaagccc atctctttca ggctttaagg ttctataatt aatagtttct ggttttttta
     5041 cttctccata agaccatgat ttgatttttt caggacttgc aagtctcagt tgaaatgctt
     5101 caaaatctct aggtcttgca tcttctttaa tttctattac tttaaattta ctcattatct
     5161 tcatccttat caaaaatctc aacatctaaa gcaagagatt taagctcatt ggttaataca
     5221 aaaaatgttt caggaattcc tgttgctgga acattttcac cttttgtcaa tgctttataa
     5281 gcactaaatc taccttctac atcatctgat tttatggtta acatttctct taaagtgtga
     5341 gccgctccat aagcttcaag tgcccaaact tccatttctc caaatctttg tcccccaaag
     5401 agtgctttac cacccacagg ttgttgggta accaagctat aaggtcctgt acttcttgca
     5461 tgaacttttt catcaaccaa gtgatggagt tttagcatat acatacatcc tacatgaaca
     5521 cgctctgcaa ttttttcccc tgttcgtcca tcgtaaagtt ctgttttgcc atccatatct
     5581 atcttagcca ttttaaaaag cttgctaaat tcttctatat ttacaccttc aaaaacagga
     5641 gtagaaaatt taactccttt actccagtct ctagcatagt ttaaaagctc ttcatcgctt
     5701 aagcttttaa taaattcttt ttcgtttgca agtcttggaa tagaacaaat ttcaagcatt
     5761 ttcgctctta attctttaag aaaatctttt tgctttctat caaaaatttc ttgaatttga
     5821 tccccaagtc taagtccaac taaacctaaa tgactttcta aaatttgacc tatattcata
     5881 cgacttggaa cgccaagtgg attaagcgca atatccacgc tcttaccatt tggcaaataa
     5941 ggcatatcta cttcaggaac tatagttgaa actatacctt tatttccatg acgtcctgcc
     6001 attttatcac cgactttaag ctttcttttt gtagcaatat aaactttaac aagcttaatt
     6061 accccacttg gtaaaatatc atctttttct aaaatttcaa gcttttcatc gtgttctgct
     6121 tttaattttt tcttctcatt ttggaaatga ttttttaaat catcgtattc tttttgaatc
     6181 tctttagaat aagctttaat caaagttgtt aaagtaaaac gattgatttt ttcaagttcg
     6241 ctaatatctg cagtttgtcc ttttttataa tttttatctc caattttttg atcgctattt
     6301 aaagaggctt tggaaagaag agcacaaaca cgaagcattt cttctctatc catcatcaaa
     6361 agtctatcat gatgctcttt ttctaaagcc attttttctt tatcataaga ttttattgcg
     6421 cgatcatctt tttcatagcc ttttttagtg aaaattttaa catccacaac aacaccctct
     6481 aaagaagcgg ttgcataaag ggatttattc acaacatgtc ctgctttttc tccaaaaatc
     6541 gctcttaaaa gtctttcttc aggagttggt ttaacctcac cttttggaga aaccttaccc
     6601 accaaaatca tacctggttt gatatgggta ccaatttttg caataccgct ctcatcaaga
     6661 tgcgcaacat cttcttcttt tacatttgga atatctttgg taatttcttc tataccgtct
     6721 tttagttctc ttgcttcaat ttctttttca taaatgtgca cgcttgtaaa agtatcttca
     6781 cgaataattc tctcacttac aactatagca tcctcatagt tataaccatt ccaaggcata
     6841 aaagcgatta aagcattttt acctatagca agttcgcctt gatccataga aggaccatct
     6901 gcgataattt gtcctgcttt tactatatca ccttttttaa caatagggtg ttgaatataa
     6961 tttgtatttt gattggttct taaatttttc tccatagtgt aatggtcaat aaatggacct
     7021 ttatcatctt cacctaaaat gaaaatgctt ttattatcca ctttctcaac cacaccgcca
     7081 cgctttgctt taacagcttc ccaagcatca cgcgcaataa tttgttccat acctgttcct
     7141 actatcggag ctgaagcagt aagaagtggc acagcttgac gttgcatgtt tgaacccatt
     7201 agtgctctgt ttgcatcatc gtgctctaaa aacggaatca aagaagccgc aaccccaaca
     7261 accatacctg agcaaagatc gattaattgc acttcttcgc gtcttgcaag tatagtttca
     7321 ccatcttgtc tagcctcaac aaattcttct actatattgc ctttagcatc aaccttagtt
     7381 gaagctggtg cgataaataa gccttcttct tgtgttgctg taagataaac aacttcatta
     7441 gtcactttac catttacaac ttttctatat ggtgcttcaa caaagccaag ttcgtttact
     7501 tttgcataag tagaaagagt gttaatcaaa ccaatatttt gaccttcagg tgtttcaact
     7561 ggacaaattc taccataatg tgtcgcgtga acatcacgca cttcaaaacc tgctctttct
     7621 tttacaagtc caccttcacc aagcgctgat aaacgacgct tatgagtaac ctcgcttaaa
     7681 gggttggttt gatccataaa ttgcgaaagc tgacctcctg taaaaaattc aatgatagtt
     7741 gtagtaatca ttttaggatt gattaaatca taaggcatta ctttatcaag atccgcattt
     7801 aaagaagtaa atttatctct gatcgccttt tgcatttttg caagacctaa atgaagttca
     7861 ttggctaaaa gttcacctat agaacggata cgacgatttc ctaaatgatc tctatcatca
     7921 atatgtcctt taccattttt tactttaatt aaatattttg cagttttaat aatatcttca
     7981 ttagtcaaaa cagtaacata ctcaggtact tcaagaccta atttatggtt cattttcata
     8041 cgacctacct tggtaagatc gtatctttca ggattgaaga ataaatcatt tacaaaagcc
     8101 ttcgctgcat cttttaccac aggttcacct gggcgcataa ctttgtaaat tctaatcgca
     8161 gctaaatcat tttcatcatc gatattttca ctttgtttaa gaagttttag agtttctcca
     8221 tcttgagcaa aggagttaat aatcgctgca tcaacgccat tagccaagtc atttgctata
     8281 tcaaaacttt tttgctcttt aatcttagca agcttactct catctaacaa agttaaagaa
     8341 tcaaataaaa cctctccact ttctttatca ataataggat ttgctaaata acgattaagt
     8401 aaaatttcta caggatattc tatccatttt aaaccgtctt taataagctg ttctgctttt
     8461 ttctttgtaa gtctttttcc agcttgatga acgatttttc ctttttcatc tttaatatca
     8521 tattctattc tatccataaa atcatttgga ttaaattctg ttaaaaattt atcttttttc
     8581 acatgtatag tctgaatagg ataaaacaac ttaataatat cttgtttttt ataccctaaa
     8641 gctctaaaaa gcatagttac aggaactttt ctacgcttat tgattcttac atacaaaaca
     8701 tctttggcat cgtattcaaa ataaagccac gaaccacgat caggaataat ttgtgctgta
     8761 taaacaagct tatttgcaac cgttgaactt tcttcttctt taaaaataac accagggctt
     8821 ctatgtaatt gatttacaac caccctctca accccattaa tgataaaaga tacacgatct
     8881 gtcattaaag gaatttcgcg gatataaatt tcttgttctt taatatcttt tacgccaact
     8941 ttttcccctg ttttttcatc tttttcatgc agagtaagac ggattttcat ttttaaattt
     9001 acagaataag tcaaacctct ttccatgcat tcgcgaatgg tatattttgg cttgcctatt
     9061 tcactactaa catattcaag actcaatcta ttttgcggat catgaatagg aaaaattgat
     9121 ttaaaaactt tttctatacc actttcacca ttatcaagat ttaaaaaata atcaaaactc
     9181 tttttttgta attgtagaag atttgggatt tctatttgtt ttgaaatgtt tgagaagtct
     9241 actcttaaac gatttcctaa tttattatct aacatatcgc acatacctca tggtaaattt
     9301 tgtaaattta aaaaagaaga cctaaaaatt aggtaaaaat aaaaaaagaa gacttgcctt
     9361 ggcaaatctt cttctaactt taaagcttaa aattacttaa gttctacttt agcaccagct
     9421 tcttcaagtt gttttttagc ttcctcagct tcagctttag ccacaccctc ttttagagtt
     9481 gaaggagttt gctcaactgc atcttttgct tctttaagac caaggcctgt aagagcacga
     9541 acgattttaa taacttcaat ctttttagca ccgccatcag ttaaaacgat atcaaattca
     9601 gttttttctt cagcagcagc tgcagcacca ccagctgcag caccaccagc tatcattaca
     9661 ggagcagcag acacaccaaa tttttcttca aactctttta caagttctga taactcaaga
     9721 acacttaaat ttgaaatata ttctaataca tcttctttag agattgccat tttttatcct
     9781 tttatttaat ttattcagat tcttttttat ttttaagcgc atttaaacct attgtgaaat
     9841 tggtaattgg cgcattccaa acttgcaaaa gcatagcaag caactcattg cgtgaaggca
     9901 ttttagcaag agctttaacc ttagcaacat ctgcaacttc gccttcaata tgagctgttt
     9961 tgatttcaaa tttatcgtta ttttcttcaa atttagcagc tacttttgaa acacctagct
    10021 gatcttcgcc ccaaagataa atatttgtat ctttaagaac tagacctgtt ttaccggaat
    10081 tattaagagc aatgttagcc aaagtatttt taacaatttg aacttttaca ttgttttctc
    10141 ttgcattatt tctaagctct tctagttttt ttgtgctaag acctctgtaa ttacaaacta
    10201 caatagcttc actagcttta aaaccttctt caagtttagc aataatctca actttttcgc
    10261 ttctagtcac attttctcct ttccgattga gatttcaagt agagtggaaa tccaattaag
    10321 cttacgcctc gactatcttc aatctaaaat aaacatctca aaaaatcaaa aattttttca
    10381 aatgtttatt ttaaaacaaa agagttgcaa aaaagcaact cttatttcat atcaagcaat
    10441 tcttgtgttt caagctttac agaagggctc attgtcaaag ataaagccgc atttttaata
    10501 tatctacctt tagctgcagc aggtttatgt ttgttaattg cctttacaaa agtgctaaca
    10561 ttgtcccata attgttcttt ggaaaaactt actttaccaa gacctgcatg gatatttcct
    10621 tgcttatcaa cacggaaatt tacctgacca ctttttgcat tattaactgc ttgagcaaca
    10681 tccatagtca ctgttccagt tttaggattt ggcattaaac cttttggccc taaaattcta
    10741 ccaactttac caacaagtcc cattaaattt ggagtagcaa tcaaaacatc aaaattcata
    10801 ttaccttttt gaatttcttc tactaaatca tcgctaccca caatatctgc accagcattt
    10861 ttcgcttcat cagcttttgc gtcttttgca attacagcaa cacgaacttt tttacccgtt
    10921 ccagcaggta aaacaacaga tcctcttacc atttgatctg catgtcttgg atcaacatta
    10981 agttttaaag caatttctac agtctcatca aatttagcag actttaaagt ctttattgta
    11041 tcaattgcat cgcttaaagc atactcttta tttgaatcaa ttttttgtga taattctttt
    11101 aatctttttg ctatcttagc catttaattt tctccgcatt ttaaagtgct accgcctttt
    11161 accttggcgg tgaaaggatt aatctacgat ttcaacaccc atagaacgag ctgaacctgc
    11221 aataatttta gcagcttgat ctctatcttt agtatttaaa tctgcaattt tcttatctac
    11281 tatttctaaa acttgagcac gagttaactt acccacctta tttttaagtg gattatccgt
    11341 acctttagaa attccagctg cttttttgat caaatccgta gctggcggtt gttttgtaat
    11401 aaaagtaaaa cttttatctg cataaacagt gataacaaca gggatattaa aacctgccat
    11461 atcttttgtt ctttcattaa aagccttaca aaactccata atattaacac cttgctgacc
    11521 caaagcagga ccaacaggtg gtgatgggtt tgcttttgtg gcagcaattt gcaatttaat
    11581 ttcgcctacg acttttttag ccataacaaa tctccttact tgatataaat taaattattt
    11641 tctcaacttg agaatataag atctccactg gagttgaacg tccaaaaata gaaacattta
    11701 attttaataa accacgaacc atatcatact cttctacaat tgcagtaaag tttgcaaatg
    11761 gcccttctgt gattctcaca ttttcccctt cttcaaaaga aatctttggt ttaggcgctg
    11821 cacgattgtg aactttttcc aaaatcaaat taatatcttt ttctgttaaa ggggttggct
    11881 ttttggattc tccaataaaa cgaccaacct ttggaagaga ttgaatgcga tgccaaagct
    11941 ctgtatttaa atcaagaagt gcaaaaacgt atcctgaata caaacttctt tcgctaatct
    12001 tctcctttcc attcttaaat tcaataacat cttcagttgg aacaacaatt tctttaagtt
    12061 gttcttcaat tccgttatct tttactaaat tttcaatggc tcttttaact gccatttcac
    12121 tgccagcata agtttgaatt gcataccatt tatgagtact catttactct ccttatacga
    12181 tcgcagaaac aatagaggac ataagccaat ccactaacgc caaaaacaaa gaaatcacca
    12241 caacaaccac aaaaactgta atataggcat ttcttacctg ttcttttaaa ggaaaaatta
    12301 ctttccttaa ttcggctttt gataatttaa aataagttat taatttttcc atttatttaa
    12361 accttaatta tggcagggca agagggattc gaacccccaa ccatcggatt tggaatccgg
    12421 cgctctaccg ttggagctat tgccctaagg gcgcaagctt aactttttag cttaacttct
    12481 ttgtgaagtg tatgtttttt taatcttggg caatattttt ttaattctaa tttttcagta
    12541 gtatttttac tatttttata ggtgctataa ttaatatcac cacattcttc acactttaaa
    12601 ccaactttaa ttctcatttc aattttcctt aaaaaattaa agccaagctt ttaacttggc
    12661 tttattaaat tatttaataa ttttagaaac aacacctgaa ccaacagttt taccaccttc
    12721 acgaatagca aaacgagttc cttcttcaag tgctactgga gcgatcaagc ttacagtaat
    12781 tctcacattt tcacctggca taaccatttc aacaccatca gctaatttaa tcgaacctgt
    12841 aacatcagtt gttcttacat aaaactgcgg tctatagttg ttaaagaatg gagtatgtct
    12901 accaccttca tctttattta agatataaac ttcagcttcg aagtcagtgt gtggagtaat
    12961 tgattttggt ttagcaagaa ccataccacg gataacttct tcttttttag taccacgaag
    13021 aagaacacct acgttatctc ctgcttcgcc ttgatccatt tcttttctga acatttcaac
    13081 acctgttaca gttgttgttt gagtatcttt aataccaacg atttcgatag tatcacctac
    13141 ttttacaaca cctttttcaa ttctacctgt aacaacagta ccacgacctg aaattgagaa
    13201 aacgtcttca attggcatca agaagtcttt ttcagtatca cgagttggag ttggaatata
    13261 gctatcaact gcagccataa gatccataat ttttgctgac cattcaccat cttgtccagc
    13321 tttagcttct tcaagagctt ttaaagcaga accagaaata ataggtgtat catcgcctgg
    13381 gaaatcataa gagcttaata attctctaat ttccatttca actaactcta gaagttcagc
    13441 atcatcaacc atatctgctt tattcataaa aacaacaata tatggaacac ctacttgacg
    13501 agaaagaaga atgtgctctc tagtttgtgg catagggcca tctgcagcag aaacaaccaa
    13561 gatcgctcca tccatttgtg cagcacctgt aatcatgttt ttaacataat ctgcgtgacc
    13621 tgggcagtca acgtgtgcat agtgacgatt gtctgtttca tattcaatat gagaagtagc
    13681 aatagtaata ccacgctctt tttcttctgg agcattatcg atattatcat aatctttaag
    13741 ctctgccaaa cctcttctag aaagaacagc agaaatagca gctgttaaag tagttttacc
    13801 atggtcaacg tgaccaatag taccaatatt tacgtgtggc ttattacgtg aaaatttttc
    13861 tttagccatt tttttcctcc gtataaaaaa taaattgagc aaagcaagtc ttatatctat
    13921 ataatttttt caattcatgg agctcatagc gggaattgaa cccgcgacct ctcccttacc
    13981 aagggagtgc tctacctctg agctatacga gcgctcagaa aaattataca caataacaga
    14041 caacaaaaac tcttaaatgg gatatatact gtaagttaaa ggttttaaaa tacagctccc
    14101 agttctttta aattattgga gcgggaaacg ggactcgaac ccgcgaccct cagcttggaa
    14161 ggctgatgct ctagccaact gagctactcc cgcaaagcat ggtggtgagt cgtggattcg
    14221 aaccacggaa ggcgaaagcc agcagattta cagtctgccc tcgttggcca cttgagtaac
    14281 tcaccataaa aatattgctt tttcaatatt ctggtcaaac actgctaaaa taaatggagc
    14341 tggttaaggg acttgaaccc ccgacctgct gcttacaagg cagctgctct accaactgag
    14401 ctaaaccagc aaaaataaaa gtaagattat aactcaaaaa aaaaattttg tcaagacttt
    14461 tttagttttt ctataaaatt tttagtcttg taaattttat tatcataaac caatattatt
    14521 tttatctatt tgtgataatc aaataaattt aaaaatttct ttgctctttc gctttttgga
    14581 tttttaaaaa aacttttagg atcattttct tcgatgattt ttccttcatc cataaaaata
    14641 attttatctg ctacagcttt agcaaaaccc atttcatgag taacaataag catagtcata
    14701 ccctcttttg caagatttaa catcacttct aaaacttctc tgacaatctc aggatccagc
    14761 gctgctgtaa cctcatcaaa aagcattaac tcaggattca tgcataaact tcttactata
    14821 gcaattcttt gtttttgtcc tccgctaagt tctcttggat aagcatgaat tttatgcaaa
    14881 agccccacct tttcaagcca aattttagcc tcttgtaaaa ccttatcttt ctttcttttt
    14941 tgcactttca taggccctaa aagtatattt tcttcaacac ttaaatgctc aaaaagctca
    15001 taagattgaa aaaccatacc aactttttga cgcattcttg gccattcttt gaaatcttta
    15061 tctatttttt cattgtcaat ataaatatta ccacttgcaa tctcttcaag cccattaata
    15121 caacgcaaaa gcgtagattt tccgcaccca ctaggaccca aaatcaccac aacttcctta
    15181 tccttaactt ctaaattaat atcttttaaa gcatgatgcg aaccataata cttttgtaaa
    15241 ttttctattt ttagtatact cattttagct ccattttttc tctaattttc ttgaatataa
    15301 agtgatagga taacaaagta taaaaaagat aaaaaaaatc aaaccataaa taataaaagg
    15361 tgcaaaatca tttctattat gaaattctat aatttgttgc cctactttta caagctctac
    15421 cgcgccgatt aaataagcaa aggttgtact tttgatcatg cgagtaagta aattcatgct
    15481 cataggagtt aaacgacgca tagcttgtgg aataataaca taagcaaaac tttgcaccgt
    15541 atttaaacct aaagatgatg cactttcata ctgatgtttt ggaatactct gtaaggaaac
    15601 acgcaccaaa tccatcatct caaaacaacc ccaaatgcta aaaacaataa tagctacact
    15661 tacagaactc aaatcccacc caaaccatct aggaaaacca aaatacacca caaaaaacca
    15721 tactaaaagt ggcataacac gtacaaattc taaacctaaa cgacaaaaag catagatata
    15781 ggtattttta aaactcatta aaattcccaa aaacaacccg cctatcgaag taataatagt
    15841 gctgataaat gaaatttcaa gagtgacaaa aagcccttgc cagagtctta aaagcgtatc
    15901 ggtatttaaa agttcaagca taaagcaacc ttttttcaaa ctttagcaaa ataaaagaca
    15961 aaggcaaaat aatgcacaaa tatcccataa acaacaaaaa caatagctca tctgtcttat
    16021 aggttaagga atttaaactc ttcattaaat tcaccaaatc tggcaaggca ataatgctaa
    16081 caactgaagt ttctttgatt aaaaatataa tattagcact aatacttggc atagaaatag
    16141 ccaaagcttg cggcaaaatc acataacgca aatttccaaa ttttgaaaaa cccaaagaaa
    16201 gtcctgcttc aaactgctgt tttcttatgg cttcaaatcc cgcccttaaa ctctcagcca
    16261 tataagaacc ccctaaaaaa ctaagtccta ctatagcaca agcaaaagaa ggtcttaaag
    16321 tttcttctac gcttaaacaa attaaattga gcggtggaat ttgctctaaa tgtatattaa
    16381 atttaggcaa agcataatat aagaaaaaaa gttgaattaa taaaggcgta tttcttgaaa
    16441 actctatata aagcttgcaa atattttcta aaatttttat tttaaaataa ctcattaaaa
    16501 tgcaaaacaa gcctattatt aaagaaaaaa taattccaaa aaagcttagt tttatcgtaa
    16561 gccaagcagc tgttaaaaaa gcgggagctt gagctaatat aaaatcaaaa tccattctct
    16621 accttaattt taccaaagtt cttttataat catatcttta tttaaaattt caattttacc
    16681 tttttttgta tcaataagtt ctgaaatttt aagctctttt aacactcgag ataaagattg
    16741 cgctctaaca tttaaatcaa ttgcgatttg tttttgcgaa attgtatcta attttttttc
    16801 attttccaaa agatacttta
//
LOCUS       DARGEX010000030        16784 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.030, whole genome shotgun sequence.
ACCESSION   DARGEX010000030 DARGEX010000000
VERSION     DARGEX010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16784
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.030"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            100..792
                     /locus_tag="SF010_000765"
     CDS             100..792
                     /locus_tag="SF010_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG8229712.1"
                     /translation="MEWLLLASIPLIVSGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            779..1732
                     /locus_tag="SF010_000766"
     CDS             779..1732
                     /locus_tag="SF010_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG8229713.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            1742..2746
                     /locus_tag="SF010_000767"
     CDS             1742..2746
                     /locus_tag="SF010_000767"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG8229714.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            2865..4157
                     /locus_tag="SF010_000768"
     CDS             2865..4157
                     /locus_tag="SF010_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG8229715.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVVFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVETGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            4168..4965
                     /locus_tag="SF010_000769"
     CDS             4168..4965
                     /locus_tag="SF010_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8229716.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(4962..6047)
                     /locus_tag="SF010_000770"
     CDS             complement(4962..6047)
                     /locus_tag="SF010_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG8229717.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(6044..7276)
                     /locus_tag="SF010_000771"
     CDS             complement(6044..7276)
                     /locus_tag="SF010_000771"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG8229718.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            7347..8282
                     /locus_tag="SF010_000772"
     CDS             7347..8282
                     /locus_tag="SF010_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG8229719.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            8463..9791
                     /locus_tag="SF010_000773"
     CDS             8463..9791
                     /locus_tag="SF010_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8229720.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPVLSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLLLSYFIGLNGVWLSPFFAEFCVLILACIFLKRIFKDLSL"
     gene            complement(9841..10770)
                     /locus_tag="SF010_000774"
     CDS             complement(9841..10770)
                     /locus_tag="SF010_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEG8229721.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSNSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAAGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIILTGIGYKF"
     gene            10924..12300
                     /locus_tag="SF010_000775"
     CDS             10924..12300
                     /locus_tag="SF010_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG8229722.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVVACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            12363..12965
                     /locus_tag="SF010_000776"
     CDS             12363..12965
                     /locus_tag="SF010_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229723.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKIQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            12956..13162
                     /locus_tag="SF010_000777"
     CDS             12956..13162
                     /locus_tag="SF010_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229724.1"
                     /translation="MGIILRILSLIAGFVTIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            13241..13968
                     /locus_tag="SF010_000778"
                     /pseudo
     CDS             13241..13968
                     /locus_tag="SF010_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323697.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
     gene            13987..15453
                     /locus_tag="SF010_000779"
     CDS             13987..15453
                     /locus_tag="SF010_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229725.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQALEKTNESIKENYIKVIIKIILDQYGFLDEKRSIKIFALMNKINVASETRYKIQ
                     DFLHNKHSSFEDLLNIIKQESRFMQFKYILISLIKDLIDIDFEDNKIYNFLYENKDIF
                     KIKDLKEIYWIKEIIKKEYQIILDDNKEIQQIFNFISETATKNNISLNGLYLSGMTIG
                     MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILKENQKTITQIIDIIN
                     NLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLSLITINNHLKEDDIQ
                     FIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            15779..>16784
                     /locus_tag="SF010_000780"
     CDS             15779..>16784
                     /locus_tag="SF010_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229726.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSAIAFLENKFK
                     INYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIFGLFVSIVNQFTNTSTFVSNG
                     KIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCGSSGGKERGAGIPMPFYNLFL
                     LCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPVMINEMLIRFIYIIKAKFYHK
                     KEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKSKNPITNPVVFLSEINLINVI
                     R"
BASE COUNT         5913 a         2169 c         2731 g         5971 t
ORIGIN      
        1 ttacttaatt tctcattcca ttcttaaaaa tattttttta aacttttctt caatttaaaa
       61 tttctataat atttctaatt catattgtgg agatggttga tggaatggtt acttcttgct
      121 tctatacctt tgattgtttc aggttttgct ttaaagatta accccttttt agtggtaact
      181 tcagttggaa tttatgctgg acttgtttca ggttttgatt ttgttaaggt tgttagtgat
      241 ataggaaaat cttttgtaga taatcgctat gttgctataa tttggcttat tttaccttta
      301 cttgctgttt tggaacgcaa aggcttaaga gagcaggcta aaaatttaat atccaaaata
      361 aaagttgcca gtacaggacg aattttaatg tgttattttg tttttagaca agttactgca
      421 gctttagggc ttttatcttt aggcggacat gcacagatga taagaccttt aatagcccct
      481 atggcagaag ctgcagctaa gcttaaattt aaaaacttaa cacataaaga tagtcaaaaa
      541 atcaaagctt tttctgcggg aacggataat gttgctgtat tttttggaga ggatattttt
      601 atagccgtgc attctatttt atttattaaa gctttttatg agagcaatgg tattattgtt
      661 gagccattgc atttatcagt ttgggctata ccaactggaa ttttggcttt aattatccat
      721 tgttctagac tttatttatt tgataaaaga ttagaaaaaa cttataaagg gttgagtgat
      781 gataagtctt gatttgcttt attatattgt aggaatttta tttttagttt ttggaatttt
      841 aagtttttct aatcaagcta aagatataaa atcaagaata agcggcgggg tattctggat
      901 aagttatagt tttacttttt tactagcagg agttttgcct cattttgtga tgggttgtat
      961 agtgatttta ctagcactta tagcaggatt taatttatta aaaccagcaa agattgaagt
     1021 tagcaaagaa gaaaaagaat acgagataaa acatgcaaat atttataaaa ataaactttt
     1081 tatccctgct ttaatggttc ctttgattac acttattggg acttttttat ttccctattt
     1141 gagttttttt gaaaataaaa atgctacatt gatggctttg attataggta taattatttc
     1201 ttcagtagtt gcttgtttta tgtttaaggc ttctcctaaa agagctgtta aagatgcagc
     1261 acatactatg gatcacatta gttgggcagc gcttttaccg caaattttgg ctacacttgg
     1321 ggtagttttt gtttctacag gaatgggcga tcaagtatct aaacttttat ctagttatat
     1381 tagtttagat aatgctttta ttgcagtagc tgtgtattgt atcgctatgg cgctttttac
     1441 tatagtaatg ggcaatgctt ttgcagcttt tcctgtgatt actgctgcta ttgctttgcc
     1501 gattttaatc atacaaatgc atgcaaatcc tgctattata ggtgcgattg gaatgcttag
     1561 tggattttgc ggaactttaa tgacgcctat ggctgcaaat tttaatatag ttcctgcagc
     1621 acttttaaat ttggatgata aaaatggcgt aattaaagcc cagtttatgt caggacttgt
     1681 tttgcttgtg gctaatatct ttttaatgta ttttttagct tttagatttt aaggagaaac
     1741 aatggaaaaa tttataaaac aatttagctt tattgcacta gaaaatattt ttagagaatt
     1801 gccaaataaa attacacatt cttttaatga tatcaatgat attaaaccac caaaacttat
     1861 gtatcctata ttttatggtt cttatgattg gcattctagc gtgcattctc actggctttt
     1921 ggtgaaaatt ttaaaagatt tttctcattt tgctccaaag gatgaaatca tcaaagctct
     1981 agattctcaa tttagcaaag aaaaagcaga aggagagctt aaatatcttc aaaaccctgc
     2041 acacaaaggt tttgaaagac cttatggatg gggatggttt ttaaaactga ctttggagat
     2101 aaatttactt gctaaagaaa atgacaaagc tgaaatttgg gctaagaatt tagaaggcat
     2161 agctgatttc tttgttaaag aatttaagga gtttttacct aagatggatt atcctatacg
     2221 agttggaacc cattttaata gctcttttgc tttgtatttt gctttagaat atgcaagatt
     2281 taaaaaagat caagaattgg agtattgcat catccaaagt gctaaaaagt ggtttttaaa
     2341 tgataaaaat atgcaagctt tagagccttg tggagatgag tttttatctc ctgttttgat
     2401 ggaagcggtg cttttaagtg ctgttttaca taaaaatgat tttgtaaaat tttttaaagc
     2461 atatttgcca aatttagaag caaaagagcc tgcaacttta tttacccctg tgagtgtgag
     2521 tgataggagc gatggtaaaa tagcacatct agatgggcta aatttaagtc gtgcttggtg
     2581 ttttaaaata ctttcaaatt tttgcgatga aaatttaaaa attcttttaa gaaataatgc
     2641 tacagagcat tttgataaag ccatagctca tatagaagat gattatcttg ggtcgcattg
     2701 gctaggaagc tttgctttgc ttgctatgga tgtggatatt ttataaaaaa tttcataaga
     2761 tgagtaaatt tgttactaaa tagatatttt ttaaatttag attttgtttt tatgctttga
     2821 aaaatatatt ttttgatatt ataagcccta taatatttta aaggatgata atggtttttt
     2881 taatcatctc tagtattata gtggctatta ttttgggcta tattactaga cataatgttg
     2941 gaatttttgc tatgattttt gcttatatta taggagcttt ttttatggat ttagctccta
     3001 aaaaaatcat agctttttgg cctatttcta tattttttgt tatttttgct gtttcattgt
     3061 tttataattt tgcaaccgta aatggaactc ttgaaaaatt agctggacat ttgatgtatc
     3121 gttttgctaa tcatccttat ttgcttcctt ttgttgtttt tgtggttagt gctattatag
     3181 ctgctttagg agcaggtttt tatacagttt tagcttttat ggcaccactt acttttttac
     3241 tttgcgataa aatcggttta agcaaaattg ctggagctat ggctataaac tatggtgctt
     3301 tgggaggagc aaattttatg acttctcaaa gtgggattat ttttcgagga ttgatggaaa
     3361 attcaggcat tgaagcaaat gaagcttttg taaattctag tattattttt gcttttacta
     3421 taattttgcc tattgtggta ttatcttttt ttgtgtttaa tgcttttaaa aataatataa
     3481 aaatcagtgt tatttcaaaa cctgattcat ttgattataa acaaaaaact actttaattc
     3541 ttatgtttat gatgattgtt gttgttttaa tctttcctgt gctaaatatt atttttccac
     3601 ataatgagac aattagttat tttaataaaa aaatagatat agctatgata gccatgattt
     3661 ttgttgccat tgctttattt ttaaaattgg ccgatgagaa acaagttgtt gctttaattc
     3721 cttggggaac cttgataatg atttgtggag tagggatgtt aattagcata gcggttgaaa
     3781 caggggctat aaaattattt tcagatcttg tagaaaatga gatcaatgtg atttttattc
     3841 cgttaataat gtgtgctatt gcagctttta tgtcgctttt ttcaagtact ttgggtgtgg
     3901 ttactccagc gctttttcct atagttccaa gcattgctgc aagtagtgga ttaagcgagg
     3961 cattgctttt ttcttgtatt gttgtagggg ctcaagcttc tgctatttct cctttttctt
     4021 ctggaggaag tctaatttta ggatcttgcc ctgataaata taaggaaaaa ttatttaaag
     4081 atttacttat taaagctgtg cctataggat ttatagcggc gattttagct actattataa
     4141 tgagttttat tttataagga taatttaatg aagattgata ctcacgcaca tatatttttg
     4201 aaaaagttaa atacggttgc aaatgcaaga tataagcctg attatgacgc tagttttaaa
     4261 gattataaag caaatttaga tcattatgat tttaataaag gggttttagt tcagccaagt
     4321 tttttaggta ttgataatga atttttgctt cagagtatag aaaaagatga aaatataaaa
     4381 gctatagttg tggttgatga aaatattaaa tttgatgagc ttaaaaaact aaaagaaaga
     4441 aaagcttgtg gagttagatt aaatttaatt ggcaaagaat taccaaattt taaaagtatg
     4501 gtttggactc aattttttga aaatttaagt aagcttaaaa tgcaaataga aattcaaaga
     4561 gatttagata ataatcttgt tgatattgtt gaaaatttaa ttccttatgg ttgtaatatt
     4621 gttatcgatc atttagcaag agctaatgca aacttaacaa atttagagga tttaatttgc
     4681 ttaaaaaact ctagaatatt ttttaaaatt agcggttttt atagagcaaa aatagactat
     4741 gctaataatg aacaagctgt aaaatttgca aagaaaatat atgaaatttt aaaagaacat
     4801 tttccactta gcaattttgt ttttggaagc gattggccac atacaaattt tgaatcaaat
     4861 gttaattttt catcggctct agtagctttt aatgaagttg tcgtatctaa aaaagaacaa
     4921 gagcaaattt taggggataa tgcttgtgct ttatttggct tttaagcttt ttgttttatc
     4981 ctaaagatgt attttgcaat gcgttcaaaa tgtactctta gataaggttt gtaaattaca
     5041 aaaccaccta aaagccctaa aatgcttcct attacaacat caattaaacg agcgagtatt
     5101 aatttatctg cattttcact cataaaatta gctgcttccg aaagataagt agcataagga
     5161 gtaaagaaaa tcatagctaa agcatagttt cgattgacta aaaattgtcc tataaaaaac
     5221 aaagacatca taagtaaaat aagctctata tcgtgaaatt gtttagataa aagccaccat
     5281 gcaaaacata ctcctaaggc cgttcctatg atgcgctgaa tttgtttaat ccatatagaa
     5341 tttaaagtta caccttgcat aatagctgtg caagaaatgg ctatccaata acttctttca
     5401 agttctaaaa aagttcctat aaatatagaa aaagccacaa aagaacccat gatcaaagaa
     5461 tccacaaaaa ctgcatcaaa acctatgtat tctctaggtg gaatttcgct aggtaaagca
     5521 tttttaaatc cataaatcac aacgatagaa tataacaaag ccattaaatt agctaccatt
     5581 gctccaagaa aaacaagacc tactaaaaag ataaaatcct tagcttcaaa aggagaatag
     5641 gctcctaaaa cacaagaaaa tacaaagaaa aaatatccag gtgcaccaat gttatagtat
     5701 ctaattaaaa tagaacttcc catggccata attcctatgg ggatgaaggc aaaaattgca
     5761 ggcaaaaaat gagttaaaat tcctaagaaa aaactagaaa ctatgccaaa agaacagcac
     5821 atcacaacag ccattctatg atataaagga gtgtttggaa catataaaaa agacaaagct
     5881 cctatcatgg caatgagtcc atagtttaat tttccaaaaa atacactaag ccctaaaact
     5941 atacctacgc ctaaagccgc aaaaaaaggc atttgccaaa cttgttcgct tgaatttaat
     6001 ttagcaattt ctttaaagtg ttgctttagt atttctattt tattcactct cgaatttgtc
     6061 cttccccatt gattatatat ttataagtgc aaatatcttc aatccccata ggacctcttg
     6121 catgcaattt gctggttgaa attccaactt ctccaccaaa gccaaattct cctccatcgc
     6181 taaaacgcgt tgaagcatta gcataaatac aagatgagtt tataaggcgt tgaaatttag
     6241 cgatatttga agcatcattt gagataatgg tttcagaatg caaggagctg tgtttattga
     6301 tatgctctat agcttcatcg caatctttta ctaattttac acttaaagca aaatcaagcc
     6361 attctgtatc aaaggtattt tcatttgctt taaaaatttc taaatttgag ttgttaaaat
     6421 aagccaaagc attttcatgg gcgtgaattt ttaccttaaa tttttcaaat tcaggtatta
     6481 aaagacttat aaaattttta gcaatttttt catggattaa aagcgtttct aaagcgttac
     6541 aaacacttac tctttgacac tttgcattaa ggattatttt taaagccata tctaagttag
     6601 cactttgatc tacaaaagca tgacacaagc ctttattttg cttaatgaga ggaattttgg
     6661 tattgtttgc aatttcttgt atcatatttg aacttccgcg aggtatgatc acatcgatta
     6721 aatcatcaaa ggctagaatt tgcaagattt catctctttg ggtaaacata gcaaaacaat
     6781 cttgcaaatc aaattcctta agtactttat taacaagagt aaatatagcc tcatttgtaa
     6841 attttgcttc acttccgcct ttaaatacac aagcattgga actttttatc attaaagctg
     6901 cgatttcagc gctaagacta ggccttgctt cgtaaataac acaaatgagt cctaaaggaa
     6961 tgcttatttt ttgtatgttt aaacccgcat aatttttcca gcctttagaa attttgccta
     7021 taggatcttc gatgtaagcg attttttcta ggccttcgca aagagctaaa atacgttttt
     7081 catctaacaa aagcctatct ttcattgctc cgctttttgt gaaatttgcc atatcttttt
     7141 tatttgcttc taggataatt ttgaaatttt ctcttaaaat ttgagctaat tttagaataa
     7201 ttttttcttt atctttgggc gttaagttaa gtagtttttg agaatttttc ttaatatttt
     7261 caagcaaatt tcgcattttt aatcctttat ttacaaaaaa cttgataaat tatacaaaaa
     7321 aatttagaat tgaaaggtaa atataaatga aaaaaataga tttaattgta gtaggtgcag
     7381 gtccaacagg gataggctgt gcagttgaag ccaagcttaa aaacaaagaa gttttgatac
     7441 tagaaaaatc aaataacatt tgtcaaactt taatgcaatt ttataaggat ggcaaaagag
     7501 tagataaagc ttataaggga tgcgaaggaa ccaatcacgg acatgttcct tttgaagatg
     7561 gcaccaaaga aagcactata gaaacttttc aaaacgcttt aaaagagcac aatatagaag
     7621 ttgaatttgg ttctgaagtt gagagcgtta aaaatgaaaa tggagttttt ttagtaagta
     7681 cagctaaagg tgtttatgag tgtaaaaaca ttattgttgc tataggtaga atgggtaaac
     7741 ctaataaacc tgattacaaa cttcctatga ctttaacaaa aatcattaat tttaatgcca
     7801 attcagtttt gggaaatgaa aaaattcttg ttgtaggtgg cggaaattca gcagcagaat
     7861 acgctgtgga tttggcaaat tcaaatcaag ttagcctttg ttatcgtaaa aaagaattta
     7921 caagattaaa tgatataaat cttaaagata ttcacgaagc tggaaattcg ggtaaggtag
     7981 agttaaaatt aggaattgac attaatgaag tagaagatga taatggcaaa gctaaagtaa
     8041 attttaccga tggtacaagc gatatttatg atagaatcat ttatgctatt ggtggttcta
     8101 ctccacttga ttttttacaa aaatgtggga ttaatgttga tgataaaggc gtgcctttaa
     8161 tggatgaaaa caaacaaagc aatgttaaag gcatctttgt agcaggagat attgctacta
     8221 aaaatggagc aagtatagtt acagggttaa atgacgctgt gaaaattctt tctgtgcttt
     8281 aaaatttagc ctttgggcta aatttttatt ttagtttaat ctagaaaatt catatgcaaa
     8341 ataaaataaa tattaataaa cttattgcga aattacttta tttaaattct tacatactag
     8401 gacttttggc attttattag cggtttaaaa tatttttaat tttaaatatt ttaaggatta
     8461 ttatgtcaag tatttttagc accttaagcc cttttaggct ttttgtaaaa tgtgccgtgc
     8521 caaatgttat aagcatggct tttatttctt tttattatat agttgatgga atttttgttg
     8581 gaaaatatct aggaagtgat gctttagcgg cactagcctt gattattccc tttatcatga
     8641 tgtcttttgc tttggctgat atgatagcca taggatcagc agtgcaaatt tctatgcatt
     8701 taggtttagg caagaagaat ttagctagaa agatatttag ctcaagtatg ttgattattt
     8761 ttataatctc ttgttttatt ggaattttag agtatttttt aggacctgtt ttgattgatt
     8821 gtttaaatgt tagcgatgag attaaaacga tggctaaaga atgtatgttt gtttttgctt
     8881 tgtttgcacc ctttactatg ctttcttttg ctttggataa ttatttaaga atttgcggaa
     8941 aaactgctta tagtatggta atgaatgtaa ttatagcatt aagcaatata gtgcttgatt
     9001 atatttttat agtcgagttg ggttggggct tattttcagc tgctcttgca acttgtttgg
     9061 gacttgtttt aggtggtatt tttggaattt ttcctttctt gtttcaaaat ttagagctta
     9121 aaatttcaag cctatacatg aatttaaaaa tttttaaaaa tattctttat aacggaagca
     9181 gtgagttttt tggcaatatt tcaggatctt tatatagtat ttttgcaaat tttgttttat
     9241 taaaaatttc tgatactcaa gccgtggcag ccttttctat agttttatat attgatagtt
     9301 ttattataat gcttattatt gctatgggtg atgcaatgca gcctgtgctt agttacaact
     9361 atgctaaaaa agatttttca agaatcaaag ctattgtaaa agtggtattt tttgcagggg
     9421 gatttttatc tttattctct atagtgctta tattgatatt tggagaaaat ttaatcacgc
     9481 tttttacaaa agaaaacaat caagaattta aaacttttgc ttatacagct ttgatgcttt
     9541 ttgcttttaa ttattttttt gcatggttta atgttctaag tggttctttt ttgacagctt
     9601 ttaataaggc aagcttttct ttggttttaa gtttggcgca aaatttattt atacctttgt
     9661 tttttctttt gcttttatct tattttatag gtttaaatgg agtatggcta agtccatttt
     9721 ttgctgaatt ttgtgttttg attttagctt gtatttttct taaaagaatt tttaaagatc
     9781 tatctttata ggagatagat cttttttaaa ttttatcaaa ggagcttttt ttataatttt
     9841 ttagaattta tatcctatac cagttaggat aatttgatag gtttcatcat aaaatcctat
     9901 atcgctattt cttttttcta tgccataatt tgcaaaacca taaagtccgt tataacccaa
     9961 aaattgattt ttaacaactt ttagattaag cttaactata ttaccatctt gttttttgtg
    10021 gaagatagga tcagttcctg ctgcttcata tttactaaga tttaaatttg gagtgaagat
    10081 gtaatcatta gcaaaagcca aatttgtccc tatgctaaaa ccatatcttg aatagctttg
    10141 agcttttccg tctgcatcat tgtaatcata atttaaccct aggtttaata agctataatt
    10201 atagtttaat tcaaattcgt gataataccc ctcccttttt aaagagcttt gtgcgatagt
    10261 gtctttatca tatttgtttt tgctaaataa atatgaagtg gtaaatttcc caaaatcact
    10321 ttcataaagt tgagagattt taaaaccata tctatcaaca tcagtttctt ctctatttcc
    10381 tgttgcataa ggatttgcat aagctttttc tcttaaagag gaaatcacag aaaaagaagt
    10441 gctaaaacgc tctaaataag ctctttcgta gcctaaagct ataccgctga tatctcttcc
    10501 attgtagttt ttaataaaaa ttctatcatt atctataaga ttaccatagt aaagttctac
    10561 accgataaaa ggaatgaaag aggagtttga attatcagca ttgtaactgc ttagataatc
    10621 gctgtttgcc aaggttgaaa tattactttt aatatccctt gcacccacac ctatgcttaa
    10681 atttccacta aaaccttctt gaaattctac agccgtagct gattgggtta aaatggaggc
    10741 taaaacacag gaaaataaat attttttcaa atgttctcct tgaaatgttt gttgtttgta
    10801 attaaattac atttataatt gtaactaata ttactttaaa tatttataaa aaaattaagt
    10861 tttataattt aagttttttt agatagaatt tttagaatta atttatactt ataaggaaat
    10921 ttagtgcagc aagagtatta tgacttggat ttagaacgag ctattttaag cagttgtatc
    10981 atgagtgaag aagcttatgc tagtatagca ggtgatatta gcccaaaaga ttttagtctt
    11041 aaagctcacc aagatatttt taaagcggtt gtagcttgta gtaataacaa agagcccatt
    11101 tctgtaagtt ttttaagaaa acataaaaaa atagatgagc aaattttagc agaaattctt
    11161 gccactcctt ctatgataga tttgcctgct tatgtaaatg aacttcacga aaagtccgta
    11221 aaaagacaac tcttgagttt tgcacatctt ttgccaactc gtatcaatga agatcgtgct
    11281 gtaagtgaaa tcgcagatga aattggtaaa gaaattttta gcattacaaa tcgtgtgaat
    11341 tctagagata ttaaagatgt tgatatggta atatcagaac tttttgaaga atttaaaaag
    11401 caaaaaactt tagaaaataa aggtattata gggcttgata caggttttga aggtctaaat
    11461 aaaatgacaa aaggttttaa agggggtgaa cttataataa tcgctgcgcg cccaggtatg
    11521 ggaaagacaa ctctttgttt aaatttcatt gacaagattt taagacaaaa aaaaggcgtg
    11581 gctttgtttt ctcttgaaat gcctgcaact caaatcatgc aaagaatgct atcttccaaa
    11641 acttccattc ctttgcaaaa aattttaact gcagatttaa atgatgatga atgggagcgt
    11701 ttaggagatg cttgtaatga ttatagtcaa aagaaattat atatttacga tagtggttat
    11761 gcaactattg ctgatgtaag ggctatttta aggcgtttaa aatctcaaga tgaaagtata
    11821 ggactttgtg tgattgacta tatagggctt atgatgagta attcaaattt taatgataga
    11881 catttgcaag ttagtgaaat ttcaagagga cttaagcttt tggctaggga gcttgatatg
    11941 cctattatcg cactttcaca acttaatcgt ggcttagagc aaagggcaaa taagcgtcct
    12001 ttgatgagtg atttgcgaga aagtggagct atagagcaag atgcggatgc tattttgttt
    12061 gtatatcgcg atgaggttta tagagaacaa gaagaaaaag aaagagagaa taaagctaaa
    12121 gctgaaggca aagcttatca aaggcttttt ataccaaatc ctatgcaaga aaatgctgaa
    12181 attattgttg gaaaaaatag aaatggacct gttggaacta tagaagttgt atttttaaaa
    12241 gaaaaatctt gttttgtaga taaacctata ggctatgaaa ctactgaatt tacaggctag
    12301 ctttaataaa ataagttttt aatattttaa agttattttt tacgacacaa cctgtcgcaa
    12361 gggtgtttta tactttcttt gttattttaa aacaaggaga gaaaatgtta aaacaaatcg
    12421 catttggtag tatagctctt acagctacag gatatggcat aaaaaaatta tacgaaaaat
    12481 tatccaagcc agaaagaaaa tttgatacac atgctattgt tccaagctgt aaggatgtaa
    12541 tcaacaccga agaatataaa ctcaaaagag agcttgaagt cgaacaaaag aaaaatcaaa
    12601 ttcaagaatt tctttgtgaa tgcatggagt gttatagcgg cttttcaaaa tattttaatt
    12661 ctaaggaatt tttagaattt gagcaaaatt ttacctctaa aaataatcac aaaacagaat
    12721 ttcttttgtc gtcttataaa gatcaaatga taaaagtgat cgactatgct aaaaaattta
    12781 aatgcttgag tgcttttttg gaaacacaaa gcgaaaaaaa tgacttagcg gttgtaaaaa
    12841 tgataagtga aagtatggag agaaaaatac agagatttta tctgcaaaca aaatttcaaa
    12901 cttttcctca gtatattttt ccttctgtgt ggagttctcc tatgtgggat aaacaatggg
    12961 aataatactt agaattttaa gccttatagc tggctttgtt accatagtgt tgatgtgtgg
    13021 tttgtatttt atagcgttta tggtttttgt tggcatagcg atacttattt ttctttctat
    13081 gcaaccttat ccttataata taatattttg tgctatatat ttaatcacaa ttttagcgct
    13141 agtgctatgg cgtaaaactt aaaaatttca cttccccctt gactgggggg ggggatttga
    13201 taaaatacaa agttaaaaat tttaaaaaca aggagaaaat atggcctaca gatatgataa
    13261 agatttagaa ttcttaaaag aattaagcag tccagaactc gatgagcttg taaaaatttt
    13321 aacccatgat aaagacggga aagttcgttt tactgaagag ttaaccaata atgatcttta
    13381 taaaaaacat tatccagatc ataaagaata tatcgaactc attttagaag aatttcaaaa
    13441 atttggagga aatagtattc ttaatatatt tcgaggtggt ggagttttat aatgaaattc
    13501 tacgcgatgt tgtaaaaaaa tttgatgtaa aatttgatga aaatgaaagt acaaactcca
    13561 tagaaacatc acttttatgc aaattaatag aagaagagtt aaaaaattct caagatgaaa
    13621 atacattaag agaacttgta aatattttcg aacttggcat ttctaatatt aataaacaaa
    13681 cagttgtaat gggattgcaa tctctcatta aaataggtgg atttaaaagc tatcaaattg
    13741 cagtaatagt tgcaaatcaa gttatgaaag ttttactagg aagaggttta tctcttgcgg
    13801 caaatgcaac acttacaaga gctttaagtc ttttttctgg tccggtaggt tggacaatta
    13861 tgaccacatg gactgcattg gatttagcta gcccagccta tagggtttac tataccagca
    13921 gtacttcaaa ttataatttt aagactaaaa cacaatacaa aaaactaaac acaaggaaat
    13981 gcattaatgg aaaatatttg ccaatttatc atagaaaata ttgataaaaa ttcattaaat
    14041 acaaaaaaaa taaaacttgt tttcaatatg caagagcaag aaattacaac aatttcgaag
    14101 atatttaagg tatcttcgga acacattatt gctttttatg atacctcaac atcctttaat
    14161 tattttagca aaactaccgg aatatgtttt actggcaaag aagttatctt taaaagaaaa
    14221 gaagatgaag ttttaatgaa aatcaactat gaagatttca aagaggcaaa taaatcctta
    14281 cctgaaaaaa caacaactct tcaagacatc aaatttccca tatcttttca taatcttgga
    14341 acatcttatc tttcatttga tgatttcaaa aagaaaaact acatagaaga aaatgatgag
    14401 cttataataa attttttaca catcttaact tcaaaaaata acatagaaag ttttaaaaat
    14461 gaaagtatgt ttccacaagc cttagaaaaa acaaacgaaa gtattaaaga aaactatata
    14521 aaagttatca ttaaaataat attagatcaa tacggttttt tagatgaaaa aagatcaatc
    14581 aaaatttttg ctctaatgaa taaaattaat gttgcttcag aaacaaggta taaaatacaa
    14641 gattttttac ataataaaca ttctagtttt gaagatttgc taaacatcat aaaacaagaa
    14701 tctagattta tgcaattcaa atatatttta atttcactaa taaaagactt aattgatata
    14761 gattttgaag ataataaaat ttataatttt ttgtatgaaa acaaagacat ttttaaaatc
    14821 aaagacctta aagaaatcta ttggataaaa gaaatcatta aaaaagaata tcaaataata
    14881 ttagacgata ataaagaaat tcagcaaatt tttaacttta tatccgaaac agctacaaaa
    14941 aataatatat cgttaaacgg tttatatctt tcaggaatga caattggcat gtctgtatca
    15001 attatggagt tactaggatt tggggaatta ataaaattac cactaattga ttcttcaaaa
    15061 aaatatcaca ataaaaacaa acaacaatta cgtcttttta ttattcaaga aattctcaaa
    15121 gaaaatcaaa aaacaattac ccaaattatt gatatcatca ataatttaat tgagcaatgt
    15181 aatacaaata cacaaaattt acaagaatta ataaaattat taaaattggc ttcaaaaaat
    15241 aatgaaactt ttaaagaaag ggaaaaactt ttatattgcc cagaaacgct ttcattgata
    15301 acaataaata atcatctaaa agaagatgat attcaattta tagaacaata ctatacctat
    15361 aatcaaaata ctcatgagta tgagcgcaat gacaatcttt cttcgtcaga tttagaaaaa
    15421 ctttcaaatt tttttaaatt aaaaaatcta taaggataat tttatggata aaatacaaga
    15481 aaacaccaaa atagaaaagg ctatattagc cgaaaaacaa caaatctttt taatacaaaa
    15541 taaattatcc gaaattgaaa aaaatatcaa agaacaatgt ttaaccatag aacagattca
    15601 aaatagtatc acagaaaaaa atcaaaattt gagcaatata gaatataagg aaaatcaatc
    15661 aatcgattca ttggaaaatt tttttaacac ttatagcaat tgggaaacat attgtcaaga
    15721 aattgaaaaa tatttaaact taaaaaaaat aaactcaaat gaagattctt taaaattttt
    15781 gatcacttat tcaaatttat cagatgttaa aaaaagaatt gaagatgaat ttacccatag
    15841 aaatgcagag tgcgataagt atgattattt aatagcaata acatgtggag caatagctgg
    15901 cattatggac atttttttag ttggaaatcc taaagatagc tatctaggaa aaaaggtaga
    15961 taagacggta gaaaaaatga ctcaaaaatt tgcacaatta tgtggttggg ataagcaaaa
    16021 agcattagac aaaaacaaag atttaactaa aagtgctata gcgtttttgg aaaacaaatt
    16081 taaaattaat tatgatcaaa ctactacaaa cggaagaaat ggaacaaatg gaaaagtaga
    16141 taatttaagt atgaaaaatc atcatttaaa aagcataggt cactctccag atattttcgg
    16201 gttatttgta tctatagtaa atcaatttac caatacttca acttttgtta gcaacggaaa
    16261 aatcataacc atagatacaa atacttttga attacaaggg ggaaatttta ttgctaaaat
    16321 attttgtgga ttttttaatt ggtttggaca tttagcatct gattggtgtg gatctagtgg
    16381 aggaaaggaa agaggtgcag gcattcctat gcctttttat aatttatttt tactttgtga
    16441 ttttggaaat tttggacaac atagacaaac actagcacaa attgcaaccc aagtttttga
    16501 acaaggatat gatcttaggc atggagttac tatgtctatt cctgttatga ttaatgaaat
    16561 gctaattcgt tttatatata taataaaagc taaattttac cacaaaaaag aatggaaaga
    16621 atgtatacca aaagatgaca tacctgaatt aaataaaatg cttttaatag gatctggtac
    16681 ttttttatta attgatactg gtggtgcatg gataaaaagt aaaaatccta taacaaatcc
    16741 ggtagttttc ctttctgaaa tcaatttaat taatgttata agat
//
LOCUS       DARGEX010000031        16361 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.031, whole genome shotgun sequence.
ACCESSION   DARGEX010000031 DARGEX010000000
VERSION     DARGEX010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.031"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            95..1333
                     /locus_tag="SF010_000781"
     CDS             95..1333
                     /locus_tag="SF010_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8229727.1"
                     /translation="MKLLFASFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVTYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     NLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNTVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            1330..2079
                     /locus_tag="SF010_000782"
     CDS             1330..2079
                     /locus_tag="SF010_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG8229728.1"
                     /translation="MKTAFITGASSGFGRACVEAFMQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPTLRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            2076..3809
                     /locus_tag="SF010_000783"
     CDS             2076..3809
                     /locus_tag="SF010_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG8229729.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLTFVNYYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFATRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGALNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            3806..4879
                     /gene="trmA"
                     /locus_tag="SF010_000784"
     CDS             3806..4879
                     /gene="trmA"
                     /locus_tag="SF010_000784"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8229730.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLHQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKVLATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(4866..5282)
                     /locus_tag="SF010_000785"
     CDS             complement(4866..5282)
                     /locus_tag="SF010_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG8229731.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            5401..5814
                     /locus_tag="SF010_000786"
     CDS             5401..5814
                     /locus_tag="SF010_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8229732.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLG
                     ISNETAKKECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            5814..7025
                     /locus_tag="SF010_000787"
     CDS             5814..7025
                     /locus_tag="SF010_000787"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG8229733.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLIL
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(7022..7747)
                     /gene="truA"
                     /locus_tag="SF010_000788"
     CDS             complement(7022..7747)
                     /gene="truA"
                     /locus_tag="SF010_000788"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG8229734.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(7744..8769)
                     /locus_tag="SF010_000789"
     CDS             complement(7744..8769)
                     /locus_tag="SF010_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8229735.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDGDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(8769..9545)
                     /locus_tag="SF010_000790"
     CDS             complement(8769..9545)
                     /locus_tag="SF010_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG8229736.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(9542..10210)
                     /gene="uppS"
                     /locus_tag="SF010_000791"
     CDS             complement(9542..10210)
                     /gene="uppS"
                     /locus_tag="SF010_000791"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG8229737.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(10214..10831)
                     /locus_tag="SF010_000792"
     CDS             complement(10214..10831)
                     /locus_tag="SF010_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229738.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGVSIFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(10828..11982)
                     /gene="coaBC"
                     /locus_tag="SF010_000793"
     CDS             complement(10828..11982)
                     /gene="coaBC"
                     /locus_tag="SF010_000793"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG8229739.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(11979..13268)
                     /gene="glmU"
                     /locus_tag="SF010_000794"
     CDS             complement(11979..13268)
                     /gene="glmU"
                     /locus_tag="SF010_000794"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG8229740.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGTLFINRAGHKMIKDYYYKKFQK"
     gene            13411..14145
                     /gene="fliP"
                     /locus_tag="SF010_000795"
     CDS             13411..14145
                     /gene="fliP"
                     /locus_tag="SF010_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG8229741.1"
                     /translation="MKKILLFLLLSMSLFAAEVTIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(14161..14931)
                     /locus_tag="SF010_000796"
     CDS             complement(14161..14931)
                     /locus_tag="SF010_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG8229742.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNTTINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDATRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(15025..16338)
                     /locus_tag="SF010_000797"
     CDS             complement(15025..16338)
                     /locus_tag="SF010_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229743.1"
                     /translation="MITQIIILYFHKQKLIKNSKISFANTFLKQNASKLNEIQSANSQ
                     TLVRSEVLNSTNISNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKYKQADISNTST
                     NTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENEPYIADMKQYFGVS
                     EYYTNIDMAETIKQYYNQFNQIVNHTFNDTNKTSFTETDINSMPKGYAINGIKSMDFN
                     DPSNRMNITHLRDFSNSSITNIYQTPEQMKEAESLYIQSGSLIDGINGHSFGLSLEEI
                     KNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKSYSPIPSSNQVVLSPEAKVRE
                     AKLELEMKANPSFSVSLDDIMTGKVDFASLLKGYAQDGWLDAGIYVMEKGVKWQNVYV
                     GSGISFDREFHQAKANGWKASSESINSFADSIMDRLNNLMGQTRV"
BASE COUNT         5803 a         2688 c         2229 g         5641 t
ORIGIN      
        1 ttaatgagat tgaaaatttc aaacttgaaa attaattcaa atttaatact tatttggatt
       61 aaataacaaa attaaaattt tcaaaggaaa aatattgaag ttattattcg cttccttttg
      121 ttgttttgca agtttaatgg ctagtgatgc cattaactgc gacaacatta aaaataataa
      181 aacattgcta aatgaaagtt caaatttaga ttatttaaat atagcttcaa gctgtaaaga
      241 atctttaaaa aatcaagatt ttacaaaaaa actctatgca atttccaatg aaattcgcgg
      301 aagcaatagc tcttgtaatg gtgtgactta tttgccaaaa ttacaacaat ttgatttttt
      361 attattaaaa atagctatcg atcccatcgc ttatcaaaaa actttagata cacccgaaaa
      421 tttagaaaaa aaatatgata ttttaaaatc ttattttaga tattgggcat atcaaagtat
      481 aggaaatttt agactttaca aagctttttg gaaagaatac aataacgcta tagaaccttt
      541 agaaaaatat tttgaaagta attttaattt tgataaaggt agtaatattt actatactag
      601 caatgcctta aacgaatttt taaattgggc tgttggtgaa acaaaaattt acaaagacat
      661 tagtccttta gcaaaaatca tgtcaaataa aaattattca gtatcttata tacaagattt
      721 tattttttca aataatccaa gccaagataa tcttactata gccttgcaag cagcgcttct
      781 aaatcaaaga gaaaaagaaa ttttagaact tttgattcgt tttggtgcta ggattgacga
      841 aggttatgaa agtgctattt tttacgcatt ggaaaattat gaaaatacaa actttttaat
      901 ccaaaatgga gcaaatgtta atcaagccaa tgcctttggt aaaaccccgc ttttttatgc
      961 catagagttt aatcgtcttg atatcataaa actacttctt gataatggag caaatgttaa
     1021 tcaaaaatat attaataaca atgaaaaatt agcattaagt gcgaacatag gttcaaatac
     1081 gccttatttt attacatttt gtgctctaga gcacacttca aaaaatgttt taatgcatgc
     1141 tgcggcctat ggaaatgttg aaattttaaa acttcttatt tcaaaaggag caaattttaa
     1201 tactgttgat gatcttggtt ttaatgcact tgactttgcg ctagcagcag gtaaaaaaga
     1261 aaatgctgat tatctaaaaa gcttaggttt aaaagcaaac gaaaatctat tttacggagg
     1321 tagtttagaa tgaaaaccgc atttattaca ggagctagtt caggttttgg tagagcttgc
     1381 gttgaagctt ttatgcaaga aggctacaaa gtaatcgccc ttgctagacg caaagagcgt
     1441 ctagaagagt taaaaaatgc tcacaaagat aagatttaca cgctttgcat agatgtaaga
     1501 aatcaaaaag aaatctttga ggctattgaa aatttaccca aagaatttca agaaattgat
     1561 gtgcttttta ataatgcagg tttagcttta ggggtagatg aatttgataa attaaacctt
     1621 gaagatatta acactatggt agatacaaac atcaaaggat ttttatatgt tgcaaaagct
     1681 gttattccta cacttcgcaa acaaaaaaat gcttatattt ttaacttagg ttcggttgca
     1741 ggaagaaatc cttattttgg aggcaatgta tattgtggaa ccaaagcctt tgtaggacaa
     1801 ttttcattgg ccttaagaaa tgatcttaga ggaagcaata tcaaagtaac aaacattgct
     1861 ccaggacttt gcaaaactga atttagtgaa gtgcgtttta aaggagatat ccaaaaagct
     1921 gatgcagtgt atgaaaatac gcaatttatc agtgctaatg atattgccaa agtggtaatg
     1981 tctatcatta acctaccaag tcatattaat gttaatgaaa tcgagcttat gcctgtcaca
     2041 caaacttgga atggatttta tatagaaaga gatgaatgaa taaattttta gttttattgt
     2101 ttttaccttt agttgcattt gcaaactcct cagaagcagc tgcaaatgct aatttatttg
     2161 gagcttttac acttataccg cctttagttg ctattgcttt agcctttatc acaaaagatg
     2221 ttattttgtc actctttgct ggagttttaa gtggaacttt tctgctcagt ctttctgcaa
     2281 atatttttaa agcacaacat ttaacttttg taaattatta caataccgca gtagaatctt
     2341 tttcaaagat tatttcttat atcttaggtt caacttcaga tccagtaaat gcaggaatca
     2401 ttttacaaat tctttgcata ggtggtcttg tggcactcat cacaaaaatg ggtggtgcaa
     2461 aagctgtagc attaaaattt gccacaagag ccaaatcagc tgtatcagct caagttaaca
     2521 cttggttttt agggctttta atattttttg atgattatgc taatttactg atcgtaggtc
     2581 caattatgcg tcctttggca gataaattta aaatttctcg tgaaaaattt gcctttatta
     2641 tcgactctac cgcagctcct gtagcaggaa tagctgtaat ttctacttgg ataggcttag
     2701 aagtttcttt aattaaaacc gcttatgaac acataggcat tagcgatatt agtgcttttg
     2761 gaatttttgt cgaaaccata ccttatcgtt tttataatat cttcatgctt ttttttgtag
     2821 tcatgactgc aatcatggga cgtgagtttg gttctatgta caaggctgaa gtgcgtgcaa
     2881 gaaccacagg acaaattgca cctctaccta aatcaggcgc actaaatact gctgaattag
     2941 aagatcagtt tttagcgcca aaagaaggta ttaaaattcg tgcttttgat gctattgttc
     3001 ctatttttac tttaatcatt ttagctatat taggatttta ttttaatgga cttagcactt
     3061 tagaaggcga agaacttgca aaagcaagtg ctaatccttt gtcttttgaa acttttaggg
     3121 ctgcttttgg aaatgctgat tcttctgtgg tattattcca agctgctttg tttgctgcta
     3181 ttgtagcgat ttttatcgga gttcgtcgta aaattttcaa tcttaaagaa gcggtagaaa
     3241 cttggatata tggctggaaa accatgattt ttactatagt cttactttta tttgcttggt
     3301 cgctttcaag tatagtaaaa gatctaggga cttctttatt tatcactagt ttgcttgcag
     3361 ataaattgcc tgagtttatt ttgcctgcta ctatttttgc ttttgcttca gctatttctt
     3421 ttgccatagg aacaagctat ggaactatgg ggattttaat gcctttggct gtgcctttag
     3481 ctcatgaaat cgccaaaatc aatggtatgg atgcaaatgc tatgcatcat tatatggtca
     3541 ttaatataag ctgcgtttta acaggtgcga tttttggaaa ccattgctca ccaatttcag
     3601 ataatgtaat cctttcatcc atgagtgcaa aatgcgatca tatggagcat gtaagaacac
     3661 aaattcctta tgctttattt atctgtggta tttctttaat cgctggatat attcctgtat
     3721 ctttaggact tagcgtttgg tttgtcttgc ctttaaattt catacttatt gcgcttttac
     3781 taagactcat cggaaagaaa gttccatgag tcttgaaaat tttggaaatt ttctcacttt
     3841 agatgaaaaa cactctttca taaaaaaata ttttaaagaa ttttatacaa aggattttaa
     3901 actttttact tcaaaagata agcattatcg tacaagagct gaactttcat tttaccatga
     3961 aaacgatacg cttttttatg caatgtttga tccaaaaagc aaaaaaaaat acattataga
     4021 atatttagat tttgctgatg aaaaaatttg tgcttttatg ccaaaacttc tagaatactt
     4081 gcatcaagat aataaattaa aagaaaaact ttttggcgtg gagtttttaa ccacaaagca
     4141 agaacttagc gtaaccttac tctatcataa aaatatagag gatataaagt caaatttaga
     4201 aaatttaagc aataatcttc atatcaacct tatagcaaga agtaaaggca aaaaacttat
     4261 ttttaaaaca gaaaatctaa gacaaacttt aaatattcaa gatagaaaaa tattttatga
     4321 atttaacaac gattgtttta ttcagcctaa tactgctata aatgaaaaaa tgattacttg
     4381 ggtgtgtgaa attttaaata ctcaaaaaag aatggattta cttgagcttt actgtggata
     4441 tggaaatttt actttagctt tagcaccatt cttttttaaa gttttggcca ctgaaatttc
     4501 aaaaagcaat attaattttg ctttaaaaaa ttgtgagctt aataatacaa caaatatcca
     4561 ctttgcaaga ctttcaagcg aagaattaag tcttgctatc aaaaaagaaa gagaattttt
     4621 tcgtttaaaa gatattcgat tggatgattt taatttctct catgttttag ttgatccacc
     4681 ccgtgcagga cttgataaaa gcgtaattga cttaataaaa aaatatgaaa atattattta
     4741 tatttcttgc aatcccatca ctttaaaaga aaatttaaaa gaattaagcc taacacatag
     4801 agtggaagag tttgctctgt ttgatcaatt tgtcaatact ccacatcttg aatgcggagt
     4861 atttcttagc aaggtataaa aaaataattc attaatttag cgagtattac tatcgcgata
     4921 caaagcacaa atacaaaagg gtggataaaa gcaccaagtg ggtttttctt ctttaatata
     4981 aaatgacaaa ataaagaaaa aacaactaaa gataaaattc caaaagccaa aataattttt
     5041 acagcaaaaa gtaaatttaa aggtttaaaa tgaaaacctg ccaaagcacc tccgcttaaa
     5101 aaaagcaaaa gaaccacaaa aggcattatt ttaactccag tagcactaaa aagacttttg
     5161 tcaaaattag gatttttctt tttaactaca cccaaaacaa atacatcaac aaacaaataa
     5221 cctataaaca aaatagcaca aagaagatgg attgttaaag tatatggata aaattcttcc
     5281 atttttccct ccttattaaa cttcggaatt tgctatatta taacactttt ttcatttttt
     5341 gaattcactt tagttaattt tttaatcatt taagataaaa taccaaaata aaggttaaca
     5401 atgaacgaaa aagaaactat ctcttatatt ataaatacaa gtaaaaatat tgccatattt
     5461 gctttaagtc cagataagac aaaagcttct tatagggtag cagaattttt acaaagaaaa
     5521 aattataaaa tttttcctat ttatcctaaa gaagagttta ttttaaatga aaaagtttat
     5581 agaaatttag atcaaataga agaaaaaatc gatacactta tactttttag aaaaggcgaa
     5641 gtggcactag aaattcttcc taagcttgtt gaaaaaaata ttaaaaacct atggcttcaa
     5701 cttggtatta gcaatgaaac agccaaaaaa gaatgtaaaa aattagatat aaattttata
     5761 caaaatcgtt gcattatgct agaatatccg tattttaaaa caaaggaaaa atagtgttag
     5821 agcttaataa aatttacaaa gcaaaacaac aaatttcagg atttgtaaac aaaactcctt
     5881 tcatatactc ttctttttta agtgatattt gtcaaagtga gatttatctt aaaaatgaaa
     5941 atttacaaat tacaggtgct tataaaattc gtggagctta taataaaata gccaatctta
     6001 gcgctgaaca aaaacaacac ggagtcattg cggcaagtgc aggaaaccat gctcaaggcg
     6061 tggccattag tgcaaaaaaa tttggcatta aagcagttat tgtaatgcca gaatccactc
     6121 cgctcttaaa agtttctgct acaaaagcct taggagcaga ggtgatactc aaaggggaca
     6181 attttgatga agcttatgtc tttgcaacct cttatgctaa agaaaataat cttagtttta
     6241 tccatccttt tgaagatgaa tttgtaatgg caggacaagg aactttgata cttgaaatgc
     6301 ttgatgaaat aagcgatctt gatatgatta tcgcacctgt tggaggtgga ggacttataa
     6361 gtggtatcgc aagtgcagct aaacaaatca atccaaacat taaaatcatc ggagttggag
     6421 ccaaaggagc tcctgcaatg tatgaaagtt ttcatgccaa aaaaatcaaa aatgcaaaaa
     6481 gcgtacgcac tatagccgat ggtattgctg tgcgtgatgc aaatcctatt aattttaata
     6541 ttattttaga atgcgtagat gattttatcc aagttgatga tgaagaaatc gctaatgcgg
     6601 tattgttttt acttgaaaaa cataaaatca tagttgaagg cgcaggagct gcgagtgtag
     6661 ccaccctact tcatcaaaaa ataaatacac aaaatcataa aaaaattggc gtagttttaa
     6721 gcggaggcaa tatcgatgca caaatgctaa atatcatcat agaaaaaggt ttatttaaat
     6781 cttacagaaa aatgcaaatt catgttactt tagtagataa acctggggca ttattacacc
     6841 ttacagacag cttaaaaata gccaatgcaa atatagtaaa aatcgactat gatagatttt
     6901 ctaccaagct tgattatggc gatgcgatga tttcaattac cctagaaacc aaaggtaaag
     6961 aacaccaaga agaaataaga aaaattttaa cccaaaaggc ttttaatttc tatgaaagtt
     7021 tttaataaca tatacggctt aaataaagcc catttggcgg tgctaaaaag tgattgtatt
     7081 gctttttagc ctcaatctgt tctttgagtt ctttttcact catttttcct tctaaaactt
     7141 ttaaaacgct tgctacgctt aatctaattt gccctcttaa aaaaccatta gctttaaaat
     7201 gaaaaatgct aaaatcttta taagcataag ctctagcaat aaaaatttct cttaaagtcg
     7261 ttttattatc ccctccactt ttgcaaaaaa actttaaatc cttttttcct acaaaaaaac
     7321 ccaaaagctc attagcttta cctaggtcaa atttaggata aaaatgtaca taagaagcca
     7381 taaaaggact ataagaagcg tgagaaaata tatagcggta ttctctactt tttacatcaa
     7441 atcttacttc aaaatcatct tttacttttt caattttttt gatatggata aaaggatggg
     7501 aaaatttatt aagttgtttt tgaagatatt ctaaatttgt aaaataatct ccacactcca
     7561 cactagctac agcatagctt gcatgtactc ctttatctgt acgagaagcc attaaaagag
     7621 gtgaaaaaat acccaaatgc gataaggccc cacttaaagc atcttgaaca ccttttttat
     7681 gaggctgagt agcagaacct aaaaaagcag agccatcata agaaaatata atttttattt
     7741 tcatcaatat cgactcaaaa tcattttctt aaaacaataa gccgaaacaa ataaacttaa
     7801 agaaaaaatt ccaagacaag ccaaaattgg aggttgagaa aaagaactta aaagtccaaa
     7861 atatatagca atcactccaa acatacctaa atacacatag cctttttcat aacgataagt
     7921 aaccaaacca aaacaaagcg caaaaagcgt actagcaagt ggaaacaagg ctatagttgt
     7981 ataaatcaca aattctcttg ctctttgtgg attttcgttt aaatcattcc agtattcata
     8041 aaatttcttt gtttgaagat tgtctgtatt aaactgagta tttactacta aagtgtcaaa
     8101 ttctccacta aaaatacttt gaccttgctc aaaattatac attttgcctt gatttaagct
     8161 aaaagcaaag ctatcatctt ttctttgcac atgcgcttct ttggctatga taagttgttc
     8221 tttatcatct gctttatgtt tagggcgata cataattatg ttttcatact tatcaccatc
     8281 ttgtttttct ataaaaatca tccagtctaa aaatttttgt ccaaattctc ctgttttgta
     8341 gttaaatttc acttgagtgc ttttatagtt tacaaagtta tcctgaagtt caaatactat
     8401 aggtatcatt accaaagcca caacaagcat aaaagcacta atcaagcttg caattttaag
     8461 gaaaaatttt gccaaaatca ttggtgaaaa tcccaaagta aaaagcacta tgctttcatt
     8521 ttccttagaa agcctaaaca aagccaaagt taaagaaata aaaaaagata taggcaaggt
     8581 aaaaattaaa attctaggca acataaaccc ataaagcttt aaaagatcca aaaaactaat
     8641 ctctatactt gaagtaagtt ttgcaagttg aataaaaaac accatagata caatagcaaa
     8701 aagtacgaaa aatatagaca aattcgtact taaaaattga tttaaaacat atcttaaact
     8761 aagcttcatt agaataatcc taagttttta taaaataaaa ctgccacaaa agcgatattt
     8821 aaaaagggta tcatagcaag ttcttgctct tttattgctt taattctaaa aaaaataaaa
     8881 aaaggcaaag tcaaaataga agctataaat aatactaaaa atccatactc aaaacctaaa
     8941 attccaccta tacaagacat aataataata tcagcatcac ccaaattttc taaaatttca
     9001 tctttttttt ggaaattcat tagaaaaaaa actaaacttt ttaataaaaa aacaaatcct
     9061 ccaaaactaa aagcatttag taaaaaacct ccactaaact ctttaaaaat caaaaaatgt
     9121 aaaatttcac tctccctaaa ggcgtaaaaa aaagcaaata aaaaagcact ccaaagtaaa
     9181 atttgtggta cggctttgag tttaatatca attaaagaaa gtaagaaaag attaaataaa
     9241 aatagagata aaaataaaaa atcataaaaa ttttgactta aagaataaac caaaataagc
     9301 aaaattgcgc ctaaaatttc attgattaac aaagaaatag gcaaatgaca tttacaagtt
     9361 tgacattttg cctttaaaaa aatataagaa aaaataggaa taatttcata gtattttaat
     9421 tttgtatcac aagaaaaaca aaaagagcgc gagataaaaa agggcttttt ttcaattatc
     9481 ctacttgcca aacttgtgca aaaagaaccc aaacaagccc ctagaattat tatgaaaaat
     9541 atcattttcc aaaagttctt tctctatttc taaattcttt aataatcctt ttaaattctc
     9601 tcttggtaag agatggaaat aaagtttcac taaaataaat ttcagcatat gaacactgcc
     9661 aaagtaagaa atttgaaagt cttttagcgt ttccaacgcg aagcatcaaa tccacatcta
     9721 aaggtaaatc taaattttgc gttaaatttt cttcatttag ctcaagtttt ttttcaatca
     9781 cacgcttagc agctcttata atctcatctc ttgcaccata acttatagcc aaattaacac
     9841 aaagtgcgtc acaatgcttt gttttttctt caactaaggt aattttttct cttactttat
     9901 cttccaagcg cgataaatca cctatagctc ttaaacgcac attatttttt tcaaattttt
     9961 ctaaagcttc atctaaacaa cgatctaaaa gttcaaaaat aaaatcaatt tcatctttag
    10021 gacgcttcca attttccgta ctaaaagcaa aaaggcttaa atttgaaata ttttcttcca
    10081 tgcaaacttc catcaatttt tgcatagttt taactccttg ggaatatcca agttttgcca
    10141 aaaaaccctt agccctagcc cagcgcctat tgccatccat aacaacagca aggtgtttta
    10201 attcattcat ttttcatcct ttaaaatcaa aaagcctttt gaaaacaaac aaaggttcaa
    10261 tcttgttttc ttgcgataca ttaaaatcta aatgttcgtt taaaaatttt tgtaccttag
    10321 caaaaggtgt aaaaatacta acaccttgtg aatctattaa aattttcaaa gctccaaaaa
    10381 cactaaaata taagtaaatt tctaaatatt ttgctctttt acgcatttga aacaagcaag
    10441 atttattttc aaagataaaa ggaatatgat aaatattttc aaaacttgca aaaagcattt
    10501 cttttaatat ctgataacgc tctatatctt tacaatctaa aagattttgt atgatgaatt
    10561 ttttataaga aattttatcc tctaaaatag cgattatcaa agccaatccc tcttcaaaag
    10621 gtttaaaatt aggacgcttt gaaagatgtt taaattgtat aactccacca ttttgcatat
    10681 aaagttcagc taaatattca gcaccaattt caagctctat catgcttttg gtttgaatct
    10741 ttttatgatt taataaaagc gtataatgtc cataacctga tttagctaaa actttcattt
    10801 gtataggtaa ggtagaatta atcatactca taatttttca caccatttta ctaattcaaa
    10861 tgccaatttt tctttgcttt gcaaagtgct tttattttca ttgtttaaag tgataaaata
    10921 aagctcattt tgatcgcttc caaaataatt tttttgatca atgatattaa gacaaaccat
    10981 atcaagttgc ttatctttta aagatttttt cgcattttct aaggcatttt gagaatcaaa
    11041 ttccatctta aaacctatct ttttgccttg aaatttgcaa gttttaagca aatcttcatt
    11101 taaagataga tgcaaattta aaccctgtaa atgctcattt tttttaattt tcccttttac
    11161 actttgaggg ataaaatcac tcaccgcagc cgtcataatc aaaaagtcat gatttaaatt
    11221 tttatccaaa agctccttta gatccttaga actttcaaat ttgcaaagct cataaggcgt
    11281 atcaaattcc acagagctta aaagttttac cctagctcct aaaaaataaa aagcgtcagc
    11341 tatggccttt gccatttttc cacttgaaaa attactcaca caacgcacat catcgatctt
    11401 ttcttttgtg ccgccacctg tgataactac acttttatcg caccaaaact tttcttttaa
    11461 aagttctctt ttgacgatat taaaaatatt cttaacttca gctaaggctc ctacgccttc
    11521 atctttacaa gctaaaactt tacaaatagg ctctataatc aaagctttat tttctttaag
    11581 catctttaaa gaattttgcg tgctaaaatg atgaaacata tttgtatttg ccgcaggagc
    11641 tatgataaga gatttatttg ctgcgattaa ggtttggata aaaagattat ccgctatacc
    11701 aaaagcaagt ttattgatag aattaacact tgcaggggca aacaaaacaa ggtctacatc
    11761 cttgctaaaa gctatgtgat tgtttgaatt ttgccaactt tcattttcct cacataaaac
    11821 ttcatcaacc aaggcttcaa aactcatttt gctagcaaat tttaacaaac cattagaaag
    11881 caaaactttt accctaaagc cttctttttt aaacaaggaa ataagctcat aagatttata
    11941 aaaagctata ctaccgctaa tggctaaaag tatggttttc atttttgaaa tttcttataa
    12001 taataatctt ttatcatttt atgccctgct ctattgataa acaaagtacc cttttctaca
    12061 ttgacactta ctgtgcttcc tgctgctatg atcacttcat cttcgatttt tacaggtgcg
    12121 ataaattgcg tatcagaacc tacaaaaaca ttttttccta tgatggtttt atgctttttt
    12181 accccatcat aattacaagt gatagtccca cagcctatat tggttccact atctatctca
    12241 caatctccta aatagctcaa atgccctgct tttacggtat ttaactttgc atttttgcat
    12301 tctacaaaat ttcctatatg agtgtttttt aactcacaat ttggacgcaa atgtgccaaa
    12361 ggccctacat cgctattttc tacgatggaa ttttctatca cgcttgaact tttaatgata
    12421 gagtttataa tcttactttt gccctctatc cttacatttt catatacttc acattcacct
    12481 acaaattcaa catctgcacc tataaaagtg ctttgcggta aatgaaaaat cacaccctgt
    12541 tgcatccagt attttttaat ttttttttgc atgaaatttt cagctatact gagttcaaat
    12601 ttatcattaa tccccataaa ttcatcttca tctacaaaaa ctgctttaat catcacatct
    12661 ttttcttttg ctagttttac aatgtcggtt aaataatact cttttgccgc attattgtta
    12721 tcaatcaaag gtaaaagctc ttttaaaagc ctcgagtcaa tcacataaac cccagcattg
    12781 caagtattta tctctttttc ttgcgtattt gcatctttaa attcaacaat tttttcaacg
    12841 ctatcgtttt ttatcaccac cctaccataa cttttaggat ctcttgcttt aaaaactgct
    12901 agatttaatt ttgcattatt acccaacaaa gcttccaaac ttgtttgctc aaccaaaggc
    12961 atatcaccac aaagaatcaa cactctttca tttttaggct caaacccact taaagctccc
    13021 gcagttcctg gataattttg caaatcttgc tctaaaattt gtgtttttgg aaaatattct
    13081 aaaatttctt tttcaacgcg ttctttttga tgcgataaaa ctacacttac atcatcactt
    13141 aaagcaaaag ccttttttaa aatgtgtaaa atcatacttt tttgacaaag ctcttgcaaa
    13201 acctttggct tttgtgattt tattctagtg cctaatcctg ccgctaaaat caaaatagaa
    13261 gttttcattt tttacctttg ttattaagaa gtctaaaaga ctattttagc agtttaaagt
    13321 taaaatccta atacccttaa actagttttt agtcatcaaa agataaaatt taaatttctt
    13381 taataaaaaa caaaaaaagg tttttaaatt ttgaaaaaaa tattattatt tttactttta
    13441 agcatgagct tatttgctgc tgaagtaact atccctacag taaatttaag cttaagtgca
    13501 cccaatacac ctaatcagct tgttactact ttaaatatag tgattgtttt aaccatactt
    13561 gcgctcgctc caagtatagt ttttgttatg acttctttct tgcgtcttat tgtagtattt
    13621 tcatttttac gacaagctat ggggacgcaa agtatgccac ctaacactat tttggtaacc
    13681 ttggctttaa ttttaacttt ttttatcatg gaacctgtag ctacaaaatc ctataatgaa
    13741 ggtataaaac cttatttagc agaaaaaata ggctatgaag aggcttttat aaaaggagca
    13801 aagcctttta aagattttat gcttaaaaat actcgcgaaa aagatttagc ccttttttat
    13861 cgcatacgca atctacccaa tcccaaaacc atagatgatg ttccccttac ggttttagtt
    13921 cctgctttta tgatttcaga gcttaaaacc gcttttgaaa tagggttttt aatctaccta
    13981 ccctttttag tcatagatat ggttgtaagc tcagttttaa tggctatggg tatgatgatg
    14041 ctacctccta ctatgatctc tctacctttt aaactcttaa tttttgtatt agtggatgga
    14101 tggaatttgc tagtgcaaag gcttgtggaa agctttgtaa cctaagaagg aaaatccttc
    14161 ttagaaaaag aattctaaat tattcttttt aaaagtatct ttaacatctt taagatattt
    14221 ctctcctaaa gaatcaaaaa gcccatcttt tttgctttct gcaataaatt catcaagctc
    14281 ttttttaagt tctgcattgc ctttttgtac tgctataccc caaaactcag gattttcttg
    14341 aaaaggcgcc aaaatggctc tagttgcatc ttgatgtttt tgccaagtgc gataaatcgt
    14401 aagttgatca taaaaaaatc catcagcctt accttgaatc acttccaaaa tagcagcatt
    14461 ttctttatca aataaattaa tagttgtatt ttttaaattt ttaaccgcat ataaatgtcc
    14521 tgtagagcca cgctttaaag ccaaaacttt gcccttttta tctaaatctt tgatatttgt
    14581 aatatcagag ttcaaaggag ttaaaatagc caaatttgcc ttagcataag gaatgctaaa
    14641 atccaccact ttctttctct catcggtaat tgtcatagag gacataataa gatctatctt
    14701 ggctgttttt aaagcaggta ttaaaccatc ccaagcgata ttttttacta caagtttata
    14761 gccgtttttc tttgcaaaag cttctaaaaa atccacgcta attccacttg ctttgcctgt
    14821 tttatcgctc atttcaaaag gcggatatcc aagctccatt cctacaacca aatcttttgc
    14881 actcaaattt aaagcaaaaa aagagataaa aatcaaaata atttttttca taatttcctt
    14941 tcaaaatttt ttgtaaaaaa attatactaa ttttatctta ttttgttatt agcaatttgt
    15001 ttcaaactta aaaaattaaa acttctaaac cctagtttgc cccataagat tatttaatct
    15061 atccattata gaatcagcaa aagaatttat actttcactg cttgctttcc aaccattagc
    15121 ttttgcttga tgaaattctc tatcaaaaga gattccactg cctacgtata cattttgcca
    15181 tttaactcct ttttccatta cataaatacc tgcatcaagc cagccatctt gtgcataacc
    15241 ttttaataaa cttgcaaaat caacttttcc tgtcatgatg tcgtctaagg aaacgctaaa
    15301 agaaggattt gctttcattt ctagctcaag ttttgcttca cgaacttttg cttcagggct
    15361 caaaacaact tgatttgaag atggaatagg cgaataagac tttaaaaaac tcataaataa
    15421 agcttcttta gaataacttc catcttcatt ttgtggataa actgacatat caggattaaa
    15481 ttgccaatct tcacctttag aaacattttt gatttcttcc aaagataaac caaaactatg
    15541 tccatttatg ccatctatta aagatcctga ttgtatatat aaactttcag cttctttcat
    15601 ttgttcaggg gtttgataaa tatttgtaat agaagaattt gaaaaatctc ttaggtgagt
    15661 gatattcatt ctattgcttg gatcattaaa atccatcgat tttattccat ttatagcata
    15721 ccccttaggc atagaattta tatctgtttc agtgaaactt gttttattgg tatcattaaa
    15781 agtatgatta acaatttgat taaattgatt ataatattgt tttatggttt cagccatatc
    15841 gatattagta taatactcgc ttacaccaaa atattgtttc atatctgcaa tataaggttc
    15901 attttcagca gcttttttaa tctcatccaa agtagattta tgtatcttaa aatcttcagg
    15961 caatcctgcg gctttgttaa aatcacttcc catatagcca tctttatcta cactataacc
    16021 ataagctgta ttagtagaag tattacttat atctgcttgt ttatatttta gagtataaat
    16081 agagttttta aattcacttg atatatcata gttgggagaa cttgttttac tacttatact
    16141 aaaattagta ttattgctag tatttgatat attagtagaa tttaatactt cacttcttac
    16201 cagggtttgt gaatttgcac tttgaatttc atttaattta ctagcatttt gttttaaaaa
    16261 agtattagca aaacttattt tagaattctt tattagcttt tgcttgtgaa agtatagaat
    16321 tataatttga gttatcattg atgctaaaga tactcatatt a
//
LOCUS       DARGEX010000032        16289 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.032, whole genome shotgun sequence.
ACCESSION   DARGEX010000032 DARGEX010000000
VERSION     DARGEX010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.032"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..125)
                     /locus_tag="SF010_000798"
     CDS             complement(<1..125)
                     /locus_tag="SF010_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HEG8229744.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFG"
     gene            complement(122..733)
                     /locus_tag="SF010_000799"
     CDS             complement(122..733)
                     /locus_tag="SF010_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG8229745.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASYPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSIGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKSLKIELEKLFDFALTKQEENLLW
                     DKVYSSKEDEIFPPNALKNSFKNLIFLDEPHFAFFHFKTWDEL"
     gene            complement(730..1872)
                     /locus_tag="SF010_000800"
     CDS             complement(730..1872)
                     /locus_tag="SF010_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG8229746.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDQKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGEADFFRFHHKNMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDKEGL
                     GLVKKLALENEVDFLVFTFGKAIASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHTGLNTEELERIIELL"
     gene            1940..3223
                     /locus_tag="SF010_000801"
     CDS             1940..3223
                     /locus_tag="SF010_000801"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG8229747.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKITNAIKKQVDKLEHVILAGFTHEPIIKLSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(3210..3815)
                     /locus_tag="SF010_000802"
     CDS             complement(3210..3815)
                     /locus_tag="SF010_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG8229748.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(3825..4139)
                     /locus_tag="SF010_000803"
     CDS             complement(3825..4139)
                     /locus_tag="SF010_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8229749.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(4142..4480)
                     /locus_tag="SF010_000804"
     CDS             complement(4142..4480)
                     /locus_tag="SF010_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8229750.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            4612..5148
                     /locus_tag="SF010_000805"
     CDS             4612..5148
                     /locus_tag="SF010_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG8229751.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            5145..5690
                     /locus_tag="SF010_000806"
     CDS             5145..5690
                     /locus_tag="SF010_000806"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG8229752.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENNDLSAISSKYSLKA"
     gene            5692..6750
                     /locus_tag="SF010_000807"
     CDS             5692..6750
                     /locus_tag="SF010_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8229753.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLVMYYFFPVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            6794..8002
                     /gene="lysA"
                     /locus_tag="SF010_000808"
     CDS             6794..8002
                     /gene="lysA"
                     /locus_tag="SF010_000808"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG8229754.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYVKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            8004..8771
                     /locus_tag="SF010_000809"
     CDS             8004..8771
                     /locus_tag="SF010_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG8229755.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            8759..9832
                     /gene="pheA"
                     /locus_tag="SF010_000810"
     CDS             8759..9832
                     /gene="pheA"
                     /locus_tag="SF010_000810"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG8229756.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            9822..10916
                     /locus_tag="SF010_000811"
     CDS             9822..10916
                     /locus_tag="SF010_000811"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG8229757.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKKVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDKKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            10968..12650
                     /gene="fliF"
                     /locus_tag="SF010_000812"
     CDS             10968..12650
                     /gene="fliF"
                     /locus_tag="SF010_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG8229758.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            12650..13678
                     /gene="fliG"
                     /locus_tag="SF010_000813"
     CDS             12650..13678
                     /gene="fliG"
                     /locus_tag="SF010_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG8229759.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            13686..14516
                     /gene="fliH"
                     /locus_tag="SF010_000814"
     CDS             13686..14516
                     /gene="fliH"
                     /locus_tag="SF010_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG8229760.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            14509..>16289
                     /locus_tag="SF010_000815"
     CDS             14509..>16289
                     /locus_tag="SF010_000815"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG8229761.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNSCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTS"
BASE COUNT         5782 a         2174 c         2919 g         5414 t
ORIGIN      
        1 ccaaattcaa acactttttc aaaatgtgaa atttttaaat cttttaaaat ttcacaaagt
       61 tttaaaccca tgaaatcttg cacttttgca tgtttttcat aatcttttgc ttttaaaaaa
      121 ttcaaagctc atcccaagtt ttaaaatgaa aaaaagcaaa atgcggttca tctaaaaaaa
      181 tcaaattttt aaaactattt ttcaaggcat ttggtggaaa aatttcatct tctttacttg
      241 aataaacctt atcccaaagc aaattttctt cttgttttgt taaagcaaag tcaaaaagtt
      301 tttcaagctc tattttcaaa gatttttcat ctttaaaaat aaaatctttg gctaagcttt
      361 tgcgttcttt aaataaagcc tctttaaaat gttctaattt aaaattttgc agggtttttt
      421 taaaaattgt aggatgaatt ccttttgatt tatctatgcc taaatttgta ccatttatgg
      481 ctattttttg cttaaaatta agctctttta aaagtctatt tgccacacaa acccctatag
      541 aaaaagcgat taaaaaaagc tcatcaaaag ctttgaaatt aaaatttaaa tcaaaatttt
      601 cataatcata aaataaaatc acatttttat cgctttttaa atgcgaaaaa tgactaggat
      661 atgaagcaaa ccctccaaat accactataa gtttttttga atcaggattt ttgcataaaa
      721 attcatattt cataaaagct ctattatcct ttcaagttct tctgtgttaa gtcctgtgtg
      781 taaagaaaaa cgaattctag ctgtattttt tggcacagta ggttctttaa tcgcaggagc
      841 aaaaaaacca gctttttgaa gtttttgtga aatttctaag gcttttttat tttcacctaa
      901 aagcaagcaa ataatataag catcacctaa aacagtgtga tttttttctt gcaatttact
      961 tttaaaaaaa gtacttaaaa gttctaattt ttctctttct ttcttaaaat aaggcatttt
     1021 tttaaaaata aattgtgtcc aagctacatt aataggtggc aaagctgtag aataaataaa
     1081 agctctagct ttgttgatga aaaatttttt atatttttca tcacatatta tacaagcacc
     1141 catggaagca atggcttttc caaaggtaaa aaccaaaaaa tccacttcat tttctaaggc
     1201 tagtttttta acaagcccca aaccctcttt atcaaaacaa cccacgctgt gtgcttcgtc
     1261 tatataaagc ttgattttat cataacgtct tttaagctca cacaaagttt taaaatcgct
     1321 aaaatctcca tccatactaa acaaagcttc gcttaaaacg atgatatttt cataattttc
     1381 ataatgtttt tggattaaac tctctaaatg attcatattt ttgtgatgaa aacgaaaaaa
     1441 atcagcctcg ccaagtctta agccatcaat catacttgca tgaataaatt tatcggctaa
     1501 aaaaagcgtc ttagaaacgc tagaaagtgc tgctatacaa gagatattta gatgataacc
     1561 actattaaaa tgtaaaattt ccttatcttt aaatttagtc tttaaaaaac tttctaattc
     1621 ttcataaatt tcaaaatttc cactcaaact tcttgaactc gaacttgaaa aaaacaaatc
     1681 ttgctctttt agggtgttta aaaactcagc ttttaactct ttagaagacg ccaaataaag
     1741 ataatcattt cctgctaaat ttaaaagttt ttgatcttgt ttataaacaa atttattttc
     1801 atgttttaaa ggcgttagag ttcttagatt gtgattttgc tctagatctt gcaaaatttt
     1861 ttcaagcttc atttttttcc tgtaaattta aaaatttaaa gtattatttt gccaaaatat
     1921 ttttaaaaaa gaagttataa tgcaaaatca aatcttaaaa aatctcgatt taaaacacat
     1981 ttggcaccct tgcacacaaa tgaaagatca cgaaactcta cctttaattc ctataaaaaa
     2041 agcaaaaggt gtatggcttt atgattttga tgataaagct tatatggatt gtgtgagttc
     2101 ttggtgggtc aatctttttg gtcattgtaa tgaaaaaatc acaaatgcca ttaaaaaaca
     2161 agttgataag ctagagcatg tgatcttagc aggctttaca catgagccca tcatcaagct
     2221 ttctgcgaga ctttgtgaaa aagtggggca tgattttaat aaatgttttt atgcggataa
     2281 tggctcaagt gccattgaag tagcacttaa gatgagtttt cattatcatt taaataaggg
     2341 agtgaaaaaa agtaaatttt tatctttaag caattcttat catggtgaaa ccttaggagc
     2401 cttaagtgtg ggcgatgttg cactttataa agatacttac aaagccttgc ttttagagtg
     2461 tttaagcacg cctgtgccac aaggcaaaga ctacactaaa gagcttgaaa ttttaaaaga
     2521 tattttagaa aaaaatgcaa gtgaaatttg tgcttttata cttgaaccct tggtgcaatg
     2581 tgcaggaaat atgcatatgt atgaagcagg gtttattgat gaggccataa agctttgcca
     2641 taaatttgga gtgcaagtga tttttgatga aattgcagtg ggctttggac gcacaggaac
     2701 tttgtttgcc ttacatcaat gcaaacaaag ccccgatttt atctgccttt caaaagggat
     2761 aacgggtgga tttatgccac tttctgtagt gcttacaaga gatgaaattt ataatgcttt
     2821 ttatgatact tatgaaagcc aaaaggcttt tttacattct catagctata cgggaaatac
     2881 cttagcttgc gcggcagcaa atgcggtttt agatatcttt gaggatgaaa atattttagt
     2941 aaaaaatcaa attttaagcg agtttatcaa aaaagaattt tcaagacttg aaaaatttga
     3001 ctttttgggt aattttagaa cttgcgggat gatcagtgct tttgatattt taagcaccaa
     3061 gtataaacgc gtaggacttt ttgtatttca aaaagcctta gaaaaaggtt tgcttttaag
     3121 acctttagca aatacgattt attttatgcc tccttacatc atcacaaaag aacaaatcgt
     3181 ttatgtacta gagagtttag agcagatttt taaggaattt taagttgtaa aatttcttgc
     3241 atttgctctt taaaatcttt atttaaaatg ctattttcat caaaaaaatc aagattgatt
     3301 ataggaattt ttgcataatt ttttataaaa tcatcttgta agatatcttt tttacccatc
     3361 attacaaggg ctaaaagatt gatatttctt tgctttaaag cttcaatgct aagcaagata
     3421 tgattaatgc ttccaagata gtattttgct accaaaatcg tagggtgttt gaaaatattc
     3481 acaaaatcaa tcatagtgta attttcatcc ataggagaaa aaagcccacc cgcaagctca
     3541 ataagtaggt ttttgctttt tggtaaaatg atatctaagg ctttataatc aagcttttct
     3601 ttgatttttc caagatgagg agaagctgga gtttgcaaaa aaataccttc tttaaaaatc
     3661 tttgtttttg ggctaaattt tgcaataaac tcgctatctg ttggagttcc tgcttgaatg
     3721 agtttaaaat aatcatagtt aaaattcgca caaaaagctg cgctaaaatg tgtttttcct
     3781 acatcagtat gtattccact tacataaatt tgcacaaaaa atcctcaaga aagaaatttt
     3841 aaacccgctg tacaagtaat aatcacagcg attaaaaaaa gtttcaaaaa acttttactt
     3901 tctttataaa aaagcactcc tatcattacc ccaccagcgg ttccagctcc tgtccatata
     3961 gcataagcaa cgctcatagc gatattttgc atacttaagc ttaaaaaagt aaaagaaaat
     4021 ccaaaacaca ctatcaaagc taaaaggtaa agcttgtttt tagtgcttac aagttctttc
     4081 atgatcacca cgccaaaaat ttcacaggca gtagctaaaa acaaataaaa ccattccata
     4141 actaagcttc cttgcttacc catttaaggg ctataatgct taaaagtaaa atcgctataa
     4201 gcacaagttt aattatagaa acagcctcat taaaaataaa catttcattt aaaaccactc
     4261 ctatagtgcc aatgcctaca aaaacactat aagtaatgct tacttcaagt ctttcacaag
     4321 cttttaaaaa acaagtaaaa gaaatacaaa ccccaatggc tgttaaaata tagtgccaaa
     4381 tttctgtaga atacttaagt ccacttaccc aaaaacattc tataatcccg cctaagatta
     4441 ttaaaaacca agctatattg atattgaatt tttcattcac atgaagcctt aaattaacat
     4501 aatttataaa acaaattata tcttaaagaa attaaaagaa gctataaatt tacttttcca
     4561 taagccaaaa ttagatataa tcaaagctca ttttttaaga aaggacaaaa gatgttagaa
     4621 ggcatcgtta gagagagtat cggtagaaaa gctgctaaag ctttaaaaag agatggttat
     4681 ctaatcgcaa acatctatgg aaaaggatta gaaaacatca atgccgcttt taaagtaaat
     4741 gagtttatta aggaagttcg taaaaaaact actttaattt ttgatgtaaa agtaggttct
     4801 caaactttaa gcgttgtagt tgtagattat caaaaagatc ctgtaactgc agaacttaaa
     4861 catgtggatt taaaagttgc acaaaaaggt gtgatttcta aatacatggt tccagttaaa
     4921 atcacaggaa cagctatagg tcttaaaaat aaaggtgttt taatccaatc aaaaagaaga
     4981 ttaaaagtaa aatgtgcagc tgaaaattta ccaaatttct tcgaacttga tgtaagtaaa
     5041 cttgatgtgg gtgatgcttt acttgttcgt gatattgtag ttcctgcggg agtaactatg
     5101 attgatgctg atagagtagc ggttgtaggt gtagaaaaag ctagatgatt ttagtcgtag
     5161 ggcttggcaa tataggcgta gagtatgaaa atacccgtca taatgtcggt tttatgctaa
     5221 ttgacttact tttaaaagaa agcaatttta caaatcttac aaactctaaa tttaaaggag
     5281 agctttttaa aataggttct tctttacttc ttcttaaacc tagtacttat atgaataatt
     5341 caggacttag cgtaaaagca gtgaatgatt tttataaatg cgaaagaatg atagttatcc
     5401 atgatgatat agatataaat ttaggagcct tgcgctttaa aaaaggcggt tcaagtggtg
     5461 gacataatgg gcttaaaagc atagatactt tatgtggaaa tgactatgaa agagtgcgta
     5521 taggagtggg aaagggtgaa aatgtgattt cccatgtttt aggtaaattt aaatccgaag
     5581 aagaaataac tttaagcaaa gttttagagc atacaaaaaa agctttgctt gagcttattg
     5641 aaaataatga tttgtctgct atatcatcca aatacagcct aaaggcttaa gatgtggata
     5701 ttttttcgtt ttatttcagg gatttattta aaaaattttt ttattatatt tttttcttta
     5761 cttggttttt attgcggtat tgatttactc ttaaatttta aagatctacc aaaagccgca
     5821 aatcttgatt tgctttatgt tatgttttta tctttttcgg cagtgcctta tgtattaccc
     5881 atttctttga tttttgcttt ggtagtttct ttgatttcta tgatcagagc aaatgaattt
     5941 gtaagtcttt atgcgttagg actgagtaga aattatgtta ttttatttcc ttttttatgg
     6001 gctttatttt tttgttgtat ttatatagga ttgaatttta cttcttttgc ttatgcaaat
     6061 gattataaga gaaatatttt aaaaaatggc actattatga atcaaagtgg agaagtgttt
     6121 ttgaaattta acaataattt tgtttatatt tcaaagataa acaatggaca aaatagtgct
     6181 caaaatataa aaatttttaa tattaatgat ttaaatttaa gctcttttgt aagtgctaaa
     6241 aatgcccatt ttgaaggtga aagctggatt ttgcgagatg gtaatattac attattacct
     6301 aaaaattatg aacttgctaa tgatggttta aagatacaag atttctccga gcttaaatca
     6361 cttgagggtt ttaaaccaaa gattatagaa ggggttgcta gtaatagtga ttattcaata
     6421 tctgatgcac ttgaaagttt tgagcttttt aaggcacaaa atgtcaatac agatactctt
     6481 aaaatcaatc tttataaatt tgtttttact cctttttttg caccattttt aatgcttgtt
     6541 atgtattatt tttttcctgt aatagcaaga ttttttaatc ttgctattgt aacttttgta
     6601 gcttttgtag tgactttgat gatttgggga gtcttgtttt tgcttactag attaagcgaa
     6661 aatagtgtga ttgcaagtga aattggcatt gtagtgccta ttataatttt gggttgttta
     6721 agtgcttata tgtattataa gcatcgataa attaagcttt gtgtagtaaa attataaaaa
     6781 ttaaaggtta aatatggatt ataaacaatt aaaacaagaa tttaataccc ctttttatat
     6841 ttacaatttt gatttcataa aagagcgttt tttaaatctc aaagaggctt ttaaggctag
     6901 aaaatctcaa attttttacg ctgtaaaagc caattcaaat ttaagtttgt tgcaaatgct
     6961 tgcaaattta gatagtggat ttgattgtgt gagtataggc gaggtaaagc gtgccttaaa
     7021 agcaggagca aaagcttata agattatttt tagtggagta ggaaaaacca aagaagagtt
     7081 aagacaagct ttagaatatg atattttata tattaacctt gaaagcgaag ctgaaatgat
     7141 gcttttagaa agtgtggcta aagaacttaa tctaaaggca agaatcagca ttcgtgttaa
     7201 tccaaatgtt gatgcaaaaa ctcatcctta tatttctaca ggattaaatg aaaataaatt
     7261 tggtgtcgaa attgatatag caagaaaaat gtatctttat gtaaaaaatt catctttttt
     7321 agagcccgtt ggagtgcatt ttcatatagg ttcgcaactt ttagatattt ctcccattca
     7381 tgaagcagca ggcatcgttg caaaacttgt aagagagtta aaagccttgc aaatcgatct
     7441 taaatttttt gatataggcg gtggtttggg tgtggcttat gaaaaagatg agtgtgaatc
     7501 tgatctttat gattatgcac aaggtatatt agcacaactt catgggcttg atttaactat
     7561 aggaatggag cctggaaggt atttagttgc taaaagtgga gaatttgttt gttcagtact
     7621 ttatgaaaaa caaaataaaa ccaagcgttt tgttgtagta gatggagcga tgaatgatct
     7681 tatacgccca agtttatacg aggcttatca tgaaataatc ttaccttata atcaagccca
     7741 agagagttta tgtgatgttg taggtggaat ttgtgagagt ggagactttt ttgctaaagc
     7801 aaggtctttg cctagcactc aaagtggtga tataatggtt attaaaaata ctggagctta
     7861 tggttttagc atgagcagta attacaatac tcgtaataaa gtttgcgaat tagcccttga
     7921 agaaggacag gtaagattga tccgtcaaag agaaaatttt gaagatcaaa tcgctttaga
     7981 agagaaattt ttaaaggctt aaaatgtttt ttttagatgt tcaagggact ttaatttctg
     8041 atcatgataa atctttaatc catggtgcta aagaactgat cgatttttta aatgcaaaaa
     8101 atcttcctta tcttatcatc actaacaata caaaaaaact tgatttttta gaaaaattac
     8161 agcaaaaagg attggctata aaagaaaatg cttatattga tcctttcagc gttttaaaac
     8221 accttttaag accttgtaaa gttgcggctt ttggtgcaga tgagtttgta aaaagtcttg
     8281 aaaatcttgg ttttgagctc gattttgtaa atcctagtgc tgtgcttgtg gctagttatg
     8341 atgattttaa atttaaagat tttgccacta tgatagaatt ggctagaaga gaagttagat
     8401 ttatagctat gcacgaaact agtatttata aaaaagatgg taggccttat cctggtgtag
     8461 gtagcattat ggctatgctt aaaaatgcta ttgattttga atacgaggtt gtgggtaagc
     8521 ctagcattgc tttttataaa gaagctttaa atttaataag aagacaaaat tcaaaaatcg
     8581 attttgaaga tattaaaatc attagtgatg attttagggg tgacttgctt aaggcaaaag
     8641 aacttggcat gaaaaccttg ctagttttaa gcggcaagat aagcgacaca aaagggcttg
     8701 atacggattt gcttgatgga gtttatccta gtgtttttga gtttttaaag gatctaaaat
     8761 gccaaattta gaagaattta gaaataaaat cgatgcggtt gatgataaaa ttttagatct
     8821 tttaaatgaa agaatgactt atgttaaaag tataggtgag cttaagcaaa gtagtggggg
     8881 aagtatttat cgtcctgagc gtgaaagagc cattatcaat cgtttaaaaa atgcaaattt
     8941 aggactttta gatcaaaatg ccatagaggc aatttatcaa gaaatttttg cagtttcaag
     9001 aaatttagaa atgcctcaaa ctatagctta tttagggcct gaaggaactt atacacatca
     9061 agcagcaaga agtcgttttg gtgcgatgag tcgttatata gccttggcca atatcgaaga
     9121 tgtttttaaa gagttaagca acaaagaagc aaaatacggt gttgtaccta tagaaaataa
     9181 taccgaaggt gcagtgggca ttactttaga ttgtctaggt aagtataatg agcttaaaat
     9241 ttttggcgaa atttatatgg atattcatca ttcttttgta ggaattaatg aaaatttaaa
     9301 agaaatcaaa cgcatttatt cgcatccgca aggttataat caatgtcgta aatttttaga
     9361 aagtcatgaa cttagtgcta tagaatttgt tccttcaaaa tctacagcta atgcagctta
     9421 cctagcttcg caagataaat atgcggcagc aatttgttct agaatagcgg ctaagcttta
     9481 taatgtgcct gtactttttg ataaaataga agataatgca gccaataaaa caagattttt
     9541 aattttaagc gatattaaaa atcctaaaat gccaaattgt aaaacttcta ttttagcaca
     9601 cacagcacat aaacctgggg ggcttagctt tttattagag cagtttaaaa aagaaaatat
     9661 caatcttact aagcttgaat ctcgccctgt aaaatcaaaa gaatttttac acagttttta
     9721 tatagatttt gaagggcata ttgatgatga aaatgtaaaa aaagccttaa aagatataca
     9781 agagattgtt tggcttggat cttatttatc aggagaaaaa gatgaaattt aatgaatttt
     9841 taaatcattt aagcaattat gaacctggaa aagatataga agttattgct aaagaatatg
     9901 gcgttaaaaa agtgataaaa ttagcaagca atgaaaatcc ttttggcacg ccaccaaaag
     9961 ctatagaatg tttaagacaa aatgcaaata aagcccatct ttaccctgat gatagtatga
    10021 tagaacttaa aagcacattg gctcaaaaat acaaagttca aaatgaaaat atcattatcg
    10081 gtgcaggtag tgatcaagtg attgaatttg ctatacatgc taagttaaat tctaaaaatg
    10141 cttttttgca agctggagtt acctttgcta tgtatgaaat ttatgccaaa caatgtggtg
    10201 caaagtgtta taaaactcaa agtattactc ataatttaga tgagtttaaa aaactttatg
    10261 aaacgcacaa agatgaaatt aaacttattt ttttatgctt accaaacaat cctttaggcg
    10321 agtgtttgga tgcaagtgag gcgaccgagt ttattaaagg tgtaaatgag gattgtttag
    10381 ttgtgattga tgcagcttat aatgaatttg caagttttaa agatagcaaa aaacatttaa
    10441 aaccttgcga attgattaaa gaatttgaca atgtacttta tttagggact ttttctaagc
    10501 tttatggatt aggaggttta cgcattggtt atggtatagc taatgctaat attattagtg
    10561 cattttacaa gcttcgtgcg ccttttaatg tgagtaatct tgctttaaaa gcagcagttg
    10621 cagcaataaa tgatgatgaa tttgctaaaa aaactttaga gaataatttt tctcaaatgg
    10681 aactttataa agaatttgct aaaaaacata atatcaaaat cattgatagt tatacaaatt
    10741 tcatcactta tttttttgat aaaaaaaata gtacagattt gtctgaaaaa ttgcttaaaa
    10801 agggtataat aataagaaat ttaaaaagct atggtttaaa tgctatacgc attactatag
    10861 gaacatctta tgaaaatgaa aaatttttta cagaatttga taagatttta agatagataa
    10921 atcaaataaa aatatgtaaa attcgctaaa ctaagggatg agaattaatg gattttaaaa
    10981 atatgcttca tcaaattggg caactttatc aaaatttaac tcgcaagcag cgtatagtga
    11041 ttgctgcatc tattgtagta gtggttgggt ttttggtttt tttagcttta tttcgtggaa
    11101 gtggtagtaa tgcaaataat ggatatgcag ttttagttga aaatgtaagc ccaagttctt
    11161 ctgctgcaat tgtagctaaa cttgaacaaa ataatattcc ctataaatta gaaagtgaaa
    11221 ataaaatttt agttccacaa gatcaggttt atcgtcaaag aatgtttatt gcaagcgaag
    11281 gtcttataaa agatagtcgc gtgggttttg aagcttttga tactcaagct tttggagcta
    11341 caaatgaaga gcaaaaggta aaataccaaa gagccataga aggcgaactt gcaagaacta
    11401 ttgagacttt agaacctatt cgtagcgctg ttgtacacat agcatttcct aaagatagtg
    11461 tttttaccga aaggcaaatt ccgcctacag cttcagttgt tgttaatgtt cgcgaaggct
    11521 taaagcttac tagaaaacaa attgatggta taaaaaatat tgtttcagcg gcagttccaa
    11581 aacttactaa agaaaatgtt aagattagtg atcaaagtgg tgtgccttta gatgagcaag
    11641 aagcatatga agatgacttg gttcgtgcgc aaattaaatt taaaagtgat caagaaaaag
    11701 ctttagaaga taagattata gaaaatttag ctccttttgc aggtggcatg gataaagtaa
    11761 aagtgagtgt aaatatagat tttgattttt ccaagcaaga atctcaaagt gaaatttatg
    11821 atccaaatcc tatagtgcgt agtgagcaaa ctttaaacga ggaaagaaca ggtagaaaag
    11881 atccagaaat tcagggtgtt ccaggtgctg tttctaatat aggtcctgtt gaaggacttg
    11941 acaataaggg tcaaattgac acttataaaa aaaatcaagt tactacaaat aatgaacttt
    12001 ctaaaactat cacaaatacc aaaaaacaat ttgcaacagt tttacgcact tcagcagctg
    12061 ttactataga tggaaaatat caagatgtgg ttgatgaaaa tggggatgtg aaaagcgaat
    12121 atgtcccatt gactaaagaa gagcttgcaa gtgttgagag tatagttaaa aatactatta
    12181 attttagcgc tactagaggt gatagtgttg tggtgcaaaa tttaccattt catcgtgagt
    12241 cgattagagt tgagagtaaa gttaaaactt tttacaatcg ttttgttgag ccatttattc
    12301 cgccggttaa atactttatt gcagcgattt tactttttat tttttacaaa aaagttattg
    12361 ctccatttac tcaaaaaatg cttgaagatg tcgcagcaca agaggaaatg cagcaaggtc
    12421 caaatgctgt tttagatgat gctgaagatg ctttagagaa atttaatgca gcaaggaaaa
    12481 aagttgaaga acaacttggt tttggggata acttcaatga agattctatc cagtatgagg
    12541 ttttgcttga aaaattgcgt ggtttggtaa gtgataaagg tgaggaaatt gcagcacttt
    12601 tgcaaaactt aattcaaaat gatagcgaat ttggcgaaaa ggatatgtga tgataaagct
    12661 aagtgaagaa caaaaaatgg tctatgatga tttatcgatg cctgagaagg tagcaatatt
    12721 tcttatacaa cttggcgaag atgcaacaac ttctgtgttt tcacatatgg aaattgatgt
    12781 aatcacagaa atttcacgtt atattgctat ggctaaaaat gttgatagat ctgtagctac
    12841 tgcagtttta gaagaatttt acactctgct tcaatcaaat caatatatta aaagtggtgg
    12901 tttggaatat gctaaagaaa tactttttcg tacttttgga ccagagattg caaataaaat
    12961 tcttgaaaaa ctcactaaaa gtatggagaa taatcaaaat tttgcttatt tggcgcaaat
    13021 taaaccacag caacttgcag actttattac caaagagcac ccacaaacca tcgctcttat
    13081 tttggcacac atggattcta ttcatgcggc agaaacttta gagtatttta gcgatgaatt
    13141 aagggctgag gtggttataa gaatggcaaa tcttggcgat atttctccaa gtattattaa
    13201 aagagtttct gcagtgctag aaagcaagct tgaaagtctt acctcttata aggttgaagt
    13261 gggcggccca agagcagtag cagaagtgct taatcgtttg ggtcaaaaag caagcaaatc
    13321 aaccattact tatattgaac aaagtgatga acgcttagca gagactatta aagagcttat
    13381 gtttactttc gatgatatac aaaaacttag cactcaggct ataagagaaa ttttaaaagt
    13441 agccgataag cgtgatttaa tgataggttt aaaaggtgca agtgaagagt taaagcaaaa
    13501 attcttagcc aatatgtcta cgcgtgcaag cgaagctttt cttgaagaaa tgggtttttt
    13561 gggtgctgtg cgtgttaaag atgttgaaga tgcacaaaga aaggttgttg aagtggtgca
    13621 aaaacttgca gaacaaggtc ttgttcaaac aggcgatgcg gatgaaatga tagagtaggt
    13681 gagagatggt taatcgtagc aatgtaattt ctggtggggc ttctgatcag catgttgttg
    13741 aaggatatcg ttttaaagtt atttcagaat ttgataatca tacaggtgaa aaaaaacata
    13801 ctcaaactcc agatgaagaa aatgctaata tatctttaaa tgacgaaaaa ccagtcgaag
    13861 aaaatcaagt cattgcctct acgcaagctg ttatggaaac tcaaattcca acatttcaac
    13921 caagctttgt tgaagatttg cttaaaaaaa cagatgaaat gtcaagcaat attattaaac
    13981 ttcaaatgca aatagaaagc caagagaatg aatttaataa ccgcttaaat tcagaacttg
    14041 aaaatgctaa agaaaaattt gccaaagaag gttatgagaa agcaaaagaa gaatttcaaa
    14101 aagaattgag tgattttaaa gataagtatt taaaaagtat agccaaactc gataatgctt
    14161 gcgaaaatct tgaaaatttc atagaaaaaa atgagaaaga attagcagat actgctatag
    14221 atatcgctaa agaagtaatc ttaaaagaac ttgaactaaa ttcaagtaag atagcttatg
    14281 ctttggctaa agatttaatc ggcgagctta agggtgctag tgcaattgag cttaaggtta
    14341 atgcagagga ttatgagtat ttaaaagagc aatttgatca gaatgctcac attaaaataa
    14401 gtcttgatga tgcaattagc aaaggaagtg ttgttattat aagtgacgca ggcaatatag
    14461 aatccaatct taactctcgt ctaactaaaa ttaaaaaaat ggtgaataat gagtaaaaaa
    14521 tttgcccata ctcaagaaga gttagaaaag ctaagtttaa aagaattaga aaatttagca
    14581 gcatctatgc gtgaaaaaat catacaagtt gtgagtaaaa atggtgggca tttaagttca
    14641 aatttgggtg ctgtagaact tagtatagca atgcatttgg tttttgatgc aaaaaaagat
    14701 ccttttattt ttgatgtgtc gcatcagtct tatacacaca agcttttaag cggaaaagaa
    14761 gaaatatttg atactttaag acaaatcaat ggtttaagtg gttatacaaa acctagcgag
    14821 ggagattatt ttgtagcagg gcattctagc acctctattt ctttggcagt aggtgcttgt
    14881 aaggctattg ctttaaaggg tgaaaagcgt attcctgttg ctttgattgg agatggtgct
    14941 ttaagtgcgg gtatggccta tgaggcttta aatgaattgg gtgattctaa atttccttgc
    15001 gtaatacttt taaatgataa tgaaatgagt atttcaaaac caattggagc aatttcaaag
    15061 tatctttctc aggctatggc aacgcagttt tatcaaagtt ttaaaaagcg tattgctaaa
    15121 atgttggata tattacctga tagtgctact tatatggcta agcgttttga agagagtttt
    15181 aaacttatta ctcctgggct tttgtttgaa gaattagggc ttgaatatat agggcctatt
    15241 gatggacata atttaggtga aattatttct gcattaaaac aagcaaaagc tatgcaaaag
    15301 ccttgtgtga tacatgctca aaccataaag ggtaaaggct atgctttagc cgaaggaaaa
    15361 catgctaaat ggcacggggt gggagctttt gatatagata gtggagagag tgttaaaaaa
    15421 agtgatacta aaaaatctgc tactgaaatt ttttctaaga atttgcttga tttagcctca
    15481 aaatatgaaa atattgttgg ggttacggca gctatgccaa gtggaacagg tcttgataag
    15541 cttatagaaa aatatccaaa tcgtttttgg gatgtggcta ttgcagaaca gcatgcagta
    15601 acttctatgg ccgctatggc aaaagaagga tttaaacctt ttattgcaat atatagcact
    15661 tttttgcagc gtgcttatga tcaagtgatc catgattgtg cgattatgaa tttaaatgtg
    15721 gtttttgcta tggatagggc agggatagta ggcgaagatg gggagacgca tcaaggtgtt
    15781 tttgatctta gttttttagc tcctttgcca aatttcactc ttttagcccc aagagatgaa
    15841 caaatgatgc aaaatataat ggagtatgct tatttacatc aaggacctat tgcttttcgt
    15901 tatcctagag ggagttttat tttggataaa gaatttaatt cttgtgagat aaaacttggt
    15961 aaggcgcaat ggcttgtaaa aaatagtagt gaaattgctt ttttaggtta tggacaaggt
    16021 gtggcaaaag cgtggcaagt tttaagagcc ttgcaagaaa tgaataataa tgctaatttg
    16081 attgatttaa tttttgctaa acctttagat gaagagcttt tgtgtgagct tgctaaaaaa
    16141 agtaaaattt ggtttatttt tagtgaaaat gttaaaattg gcggtataga aagtttaatt
    16201 aataattttt tacaaaaata tgatttgcat gtaaaagttg ttagctttga atatgaagac
    16261 aaatttattg aacatggaaa aacaagtga
//
LOCUS       DARGEX010000033        15439 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.033, whole genome shotgun sequence.
ACCESSION   DARGEX010000033 DARGEX010000000
VERSION     DARGEX010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15439
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.033"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..666
                     /locus_tag="SF010_000816"
     CDS             <1..666
                     /locus_tag="SF010_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229762.1"
                     /translation="ISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHI
                     NIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGV
                     SPREGSATLNPIAKSYAEAMAKESFDGSLTSLDDIMTGKVDFASLLKGYAQDGWLDAD
                     IYAMEKGVAWQNTSIGYGGAWFDREFNQAKANGWKASNESINSFVNNIMDRLNNLIGQ
                     TRV"
     gene            complement(724..2151)
                     /locus_tag="SF010_000817"
     CDS             complement(724..2151)
                     /locus_tag="SF010_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG8229763.1"
                     /translation="MLVNTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLINLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(2152..2871)
                     /locus_tag="SF010_000818"
     CDS             complement(2152..2871)
                     /locus_tag="SF010_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8229764.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKRVVDEDFSEIFAKQKAKSLVFWGESDESTPLYCGEKMHQFLKNSTFYPL
                     EGNHFFFLKHSAFIAQKIKEI"
     gene            complement(2873..3088)
                     /locus_tag="SF010_000819"
     CDS             complement(2873..3088)
                     /locus_tag="SF010_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG8229765.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VILSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(3148..4188)
                     /locus_tag="SF010_000820"
     CDS             complement(3148..4188)
                     /locus_tag="SF010_000820"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG8229766.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            complement(4198..4749)
                     /gene="ruvA"
                     /locus_tag="SF010_000821"
     CDS             complement(4198..4749)
                     /gene="ruvA"
                     /locus_tag="SF010_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG8229767.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATSTSELIKEALKKLG"
     gene            complement(4725..6584)
                     /locus_tag="SF010_000822"
     CDS             complement(4725..6584)
                     /locus_tag="SF010_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8229768.1"
                     /translation="MALDEKIIAYTENPARELLSVTSRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIIAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIIVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            6688..8139
                     /gene="murJ"
                     /locus_tag="SF010_000823"
     CDS             6688..8139
                     /gene="murJ"
                     /locus_tag="SF010_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8229769.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIIFTILLILVKPYILSFFIGIFTSFKGVF"
     gene            8139..9527
                     /locus_tag="SF010_000824"
     CDS             8139..9527
                     /locus_tag="SF010_000824"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG8229770.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLD
                     TPNGTIWEKINA"
     gene            9520..11262
                     /locus_tag="SF010_000825"
     CDS             9520..11262
                     /locus_tag="SF010_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229771.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFSKHNDILCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            11294..12352
                     /locus_tag="SF010_000826"
     CDS             11294..12352
                     /locus_tag="SF010_000826"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG8229772.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            12349..13599
                     /locus_tag="SF010_000827"
     CDS             12349..13599
                     /locus_tag="SF010_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8229773.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTM
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSFNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            13592..14488
                     /locus_tag="SF010_000828"
     CDS             13592..14488
                     /locus_tag="SF010_000828"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG8229774.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKETKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     STLTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            14488..15267
                     /locus_tag="SF010_000829"
     CDS             14488..15267
                     /locus_tag="SF010_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG8229775.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
BASE COUNT         5231 a         2022 c         2586 g         5600 t
ORIGIN      
        1 attagtgaat tatcatctga taaaactata ggtattatgc cgaaaaatta tgataagcta
       61 acaataacaa actattataa tacacaagag caatataatg aagcagaaca attaggaatg
      121 tttgggcata ttaatatagg cttacaacca ttaaatttca ctccgcaaag tatgcaaact
      181 caaaatttag ataaagacac tgcaatagat acttttaatc ctgatatgtc agtttatcca
      241 caaaatgaag atggaagtta ctctaaagag gctttgttta tgagtttttt aaaatcaacg
      301 ggtgtatcgc caagagaagg tagtgcaaca ttaaatccta tagctaagtc ttatgctgaa
      361 gctatggcca aagaaagctt tgatggatca ttaacttcct tagatgacat catgacaggc
      421 aaagttgatt ttgcaagttt attaaaaggt tatgcacaag atggctggct tgatgcagat
      481 atatatgcaa tggaaaaagg ggttgcttgg caaaatacaa gtataggtta tggtggagct
      541 tggtttgata gagaatttaa tcaagcaaaa gctaatggct ggaaagcaag taatgaaagt
      601 ataaattctt ttgtaaataa tataatggat agacttaata atcttatagg gcagactagg
      661 gtttaaagaa gtatttgcac gaagtcaaat taaaaatgat gacatttgca aatacttagc
      721 aaatcacata aagctaggtg catcgtttga aaagagtatt aaatctccgt gttttgtttc
      781 tttagctaga gtttgaacta gctgactctt ttctttaagt ataatggttt ttatttttaa
      841 ctcttttttg aaaatttcag cattgatttg tgcactaatg atagcaagat caaaacactc
      901 attgatgatt ttagcaagtt ttatattttc ttcttcgctt acttccacta taccaggact
      961 tactaaaact ttgcgtcctt tatagctttt acaaagttta tagcttgtgc tcataccttt
     1021 aaaatttcca ttaaaaccat catctatgat aaatttaggc tctcttgaaa gcacttgcaa
     1081 gcgatgttct acggagttta tatttaaaac ttgcttttga attttttcta gttttatgcc
     1141 aagataatga gcacaaagta tacaaacaca aagattttgc gcattaaaat cccctaaaat
     1201 ttgactttta aaatcatagg atttattttc tatatcgatt ttaaattcta aaccttcaag
     1261 acttgaatga ataagactta atttatcatc ataaaggttg atgagcttat cttcttcttt
     1321 ttgggtgcta gagtgtaaaa aagccttttc tagtcttttg gaatttaagg cttcaagttt
     1381 ggttgagcgg atattttcaa cacttttaaa atactctaaa tgtgcattgc ctatctctcc
     1441 tactatgctg atgtgaggtt gtaaaaaacg cgtgatttca tcaatatcgc ctttaagtct
     1501 agcacctgct tcagctatgt aaatttgagt atcttggctt aaattggtgt tgatatcagc
     1561 aactatgcct agcaaggtat tgacagagcg tggtgttttg tagcttttaa agtcatcttt
     1621 taaaagttcg tataaaaaat ttttaatact tgtttttcca aaacttgcgg taatgagtat
     1681 gatttttaaa ttttcattgg ctcttagttt ggctttggct tgttttttat aatataaatt
     1741 tgtaaaaaac tcataaattt taagactaaa taaagcaaaa ggaaggctaa aaagattaaa
     1801 aagaaaagaa aaacgcaaag caaggatagc aaaaatagca ttataaacaa aaacaaaaac
     1861 aaaaaaccat ttaaccttac ttgtaaaaac aagcttttta tctatacctt tgttccaaaa
     1921 atacaaaatc ggagtatgga tcaatgcaaa atatgccaaa gagtataaag gaaaagctaa
     1981 gaataaaaaa taaggaataa ataaaaaata caaatgccac aaaggtttat gataatgaaa
     2041 aaacacgcgt ttaaatttat aagaatacca ttgtaaagca ctcataagat aaaaagctat
     2101 acaaaaatta aaaaataaag aattaataaa ataaagagta ttgacaagca tttaaatttc
     2161 cttaattttt tgagctatga aagcagaatg ttttaaaaag aaaaaatgat ttccctctaa
     2221 aggataaaaa gtgctatttt ttaaaaattg atgcattttt tcaccacaat acaaaggcgt
     2281 agattcatcg ctttcccccc aaaaaaccaa gcttttagcc ttttgcttgg caaaaatttc
     2341 actaaaatcc tcatcaacaa cccttttaaa ggtttcatac atcataggac taagatttgc
     2401 tccatcttta ctagcaaaat agcgataaaa ttttcccaaa ccaaagagtt ttaaaatttt
     2461 aaaaatacgg attttaaaac gcacttttag agatttttta gccaaaattc ctgcacttga
     2521 aagtaagatt agagtgtctt tttcttttgc gagtagggta cttacttttc cgccaaaaga
     2581 atgccccatg aaaaaacaga cattgagttt tttttgtttt aaaaaaagtt ctgtgatatt
     2641 ggcgtaatct tgagtgttta aaatttcttc cacgcttgaa tttccaaaac ccgccaaatc
     2701 catataaatt tgacaaaaat cttttaaaaa aggacaaaaa ctttgcttca taagttcttt
     2761 attggctccc cagccgtgta agataagtat ttgcggtaag gaaagatcac ctaaaatttc
     2821 ataagaaatt tgataagttt tgtttttata agaaagttga gtctgagcca ttttaagcct
     2881 tttgattttt gtagatattt tctaaaagtt gcatggcgtt ttgtaagcgt tcaaattcct
     2941 tcatactaag tattacagct tcaaatttgt tattttttaa aataactatt tttccacttt
     3001 cgcttttttt gagtttttcc ataatggggc taaaatttct taccacttcg gtggcagtgt
     3061 aaatttcatc ttgtttaaaa gagagcattt ttcttcctaa aatacgctaa attttatgta
     3121 taatttagcg tattttgact taaaagctta taattttcct ttttgtccgt tgatagagtg
     3181 aaggaagttg tagctgattt ttatcatttt ttcaagtgaa atttgatcag ctaaagcgtt
     3241 taaagtagta ctaaaatctt taaaaagata attagccaaa gaaccaggat ttgggttgat
     3301 ttcatttaaa tatatttcat tatccagtat aaaaaaatcg cagcgtatta aagcaccttt
     3361 aaacaaagga ttgtagatct ttttaaaact atctttgagt ttttctttta attcttcgct
     3421 taaatttgct tctataagct cattgtgtcc tgaaaagcta agatattttt gttcaaagtc
     3481 taaaaattct tttttctttg gctcttctat gatggaaaaa acaaactcat cattgatcat
     3541 acatcctgca agattgtatt ctttgatatt gtttttaaat tcttccacta caagatcatt
     3601 atcaaattca aaacctacat ctttggcgta ttctaaatct ttttcatctt tcactatact
     3661 aatacctatg ctacttccaa gtcttgcagg tttgataatg caaggaaaac taagcttttc
     3721 tttagagttt tgattttttc ttagcatggt ataatcaagt gtttttactc caacgctttt
     3781 tgcataaagt ttagtaagtt ccttgttaaa agataatacg ctggcttcaa gcctaggtcc
     3841 tataaattta atagaataaa actcaaataa agccgcaatt tttccatctt ctccatctct
     3901 accatggata agattgatca cgcactcgca ctctagttta ttttctttta aaaagccttt
     3961 gctaaaaaaa cctccttgtt tgatgaaaag ttctttttct tttttataag ctttggtgct
     4021 aaaagtttta gaattcattt tttcacttgg gatatgataa aatcttcttt cttcatcaca
     4081 aaaaataaat tctaaatttt gattgataac ttttttaagt actacagcac ttactatact
     4141 gatctcatgt tcataagaat ttccgccaaa aagtattgca aatttcattt tattccttta
     4201 tcctagtttt ttaagagctt ctttgatgag ttcgcttgtg cttgttgctt gagcacttgc
     4261 taaaacactt atgatttttt cttgtttaaa gcctagagta agaagtgcgg ctaaggcttc
     4321 gcttttatca tcgcttacat tttcaagttt ggtttttgtg tcagaaagtt ctactataat
     4381 gcgttttgca ctttttggac ctatgccagg tactttttta agcacgcttt catcgcccaa
     4441 acttaacgct ttgtaaaaag aatttacatc aagactagag cataccgcca tagcagtatt
     4501 tgcacccact ccattgactt ttaaaagcat ttcaaacatt ttttgttcat ctttatctaa
     4561 aaagccataa aatttattag aatcttcttt gatgatttga gtgataaaaa actcatgctt
     4621 ttcttgagtt tgaattttag cagaacaaaa aagcgaaata aatatcccat agcttaaacc
     4681 actagcgcat ttaacaatga taaaagtagg ttcttttttt gtgattattc cttcgatgcc
     4741 gacaaccatg ctatatcctt ttcttcataa tctaattttt tatgtatttc tatactttct
     4801 tggttgtttt gtatgacttt tttaatgcct ataaatttag cactttcatt aacaaatgaa
     4861 gagtaaaaaa tatcttcttt aggctctaga agtgaaaatt tgatttcatt catatcagtc
     4921 catttgccac ttttatttat aaaagttgct tcaaaaagca ttttttgcaa attgattaat
     4981 tctaattgta aagatttttt gcgttcaaga agttcttttt cttcattttg tagtttattt
     5041 aattcaagat tttgcaaaga gaaatctttt agggcttttt cgtattgtac aggaacattt
     5101 tgaccttgat ttttaagttc tgttatcttt ttttcaacgc ttaaaattcc atttttgctt
     5161 gataaaatgt attgtcttat tttatttatt ttatgattta acttagaaat ttgctctcct
     5221 aaaatcgcaa attcttcatc ataattttta tcaagagttt taattttagc atgaaattta
     5281 ttgttatccc cgttaatgcg ttctattgtg gtgttttcaa aaaacacaca agaattatta
     5341 ctttctaaat tttctatata gattttatca gcttgtatat ttccacctaa gcttttttta
     5401 attctcactt ctttagcttt gattgttcca ccttcgagca aatctatatt taaaatttcg
     5461 gcttctgcaa atcctctatg agtttttata taggcttgtt tggcttgaat tttggcttta
     5521 gagtgtgtag tgccttcaat tttcatttta gtggcattaa gttgagtgtt gcttcctacg
     5581 cttccgacta catttaattc ttcacattct atcccaacgc cagaatttac agcatctttt
     5641 acttctgaaa gaaattttat attgattttg acatttttgt ctagtccagc tcttataatc
     5701 cctatatttt taaaatctac tccattaaaa tctagttcat tggcaatatc aaatttttca
     5761 ccatcttgta ctacataacc tttttttaaa gctatatatt ctgtgtatcc atcttgctct
     5821 acttgtttaa aagctgaaga acaagaaaat ttaactttat tttcatttgc ggctaaaact
     5881 tttaaggtgt gtaaatttaa gtcttttcct tctttacctt gtttaaattt ggcgtgtttt
     5941 aaaacaactt cattttcatc aacaataata atacctgagc gtttttcatc gatagtgtag
     6001 tttttggttt tttctttata agtcaagatc agggattcat cttgactttc tataggatca
     6061 ataccttgtg caacggtgat ttgtatagtt ttatttaaag gagtgttttt atgttggttg
     6121 caaaaagaca ttaaattttt cttaaaatca aaaatgcgga tacctattaa aaatttaagt
     6181 ttcaacatct ttttataaat attttgcaaa agttctagtg ctagtttttc atgaaagtct
     6241 aaatttgtaa aatcaatttg agcaattatt ttggttaaat ttttattcgc aactagtttg
     6301 actgcttgag atgctttgct ttggtttata ccgtggaaaa tttctatttt gtattcttgc
     6361 ttgatttgaa gatcattttt taaaaaaatt tcatctttat caaaaagagt taattctttt
     6421 tcagagattt tttcccattc taaatctcca aagcgatatt gtgtagaaaa tgccaataaa
     6481 ctaaaatcaa gctcatttaa gctaaggttt gttcgtgaag ttacgcttaa aagctctcga
     6541 gctggatttt ctgtataggc aataattttt tcatccaaag ccaaaacttt ccccttgtaa
     6601 aaaattaaga atgtaattat agtcaatttt taatcaattt tagttaaaat agttctcttt
     6661 atattttgaa atttatgaaa aaatttaatg aagagtttag tatttaaaaa ttttattatc
     6721 aatgctttag gaattttatt ttcaagaatt ttagggcttg ctagagatgt tttaatagcg
     6781 ctttttttag gagcagggct ttatagtgat attttttttg tggctttaaa aatgcctgct
     6841 ttttttagaa gaatttttgc agaaggagct tttggacaaa gttttttgcc taattttgta
     6901 aaagcgaaaa aaaaaggagc tttttgcgtt agtgtaatga tgcaatttag ccttatagtt
     6961 tttttatttt gtcttttggt aagttttttc tcctcttttt ttactaagct ttttgctttt
     7021 gggtttaacg cagatactat agctttagca gctcctttgg tggcgattaa tttttggtat
     7081 ttgtttttta tttttttagt tactttttta ggagctattt taaattatag acaaaaattt
     7141 ttcattacct ctttttctgc ggcattattt aacttaagta ttgttatagc tgcctttttt
     7201 gtggataaaa atgcaccgca aaatacactt tattattttt cttatgcaac ggttttaagt
     7261 ggggtagcac agcttatttt acatttgctt gttttaaaaa acaatcctgt aatccgtgct
     7321 atggctttaa gtataaaatt taaaaaagct aaggcgaaat tacaaggttt ttatggcaat
     7381 ttttttcatg gagttttagg ttcttctgcg actcaattta gctcattgct tgatacaacc
     7441 atagctagtt ttttaatgag cgggagtatt tcttatcttt attatgcaaa tcgtgtcttc
     7501 caactccccc ttgcgctttt tgctatcgct ttaactcaag tttcttttcc aaaaatttta
     7561 aaacatttaa aaagtgatca agaaaattta gccttaaaat ttatgcaaag agcattagcg
     7621 cttttaagca ttttgcttat tgcttctagt attgtaggtt ctgtatttgc tttggaaatt
     7681 tcaaagcttt tatttgaaag aggaaatttc actcacgaag atagtgtgat tacggcttat
     7741 gttttgattg cttatcttat agggctttta ccttttggtt tgcaaaagct tttttctttg
     7801 tggctttatg caaaatttaa acaaaaaaca gcagcttgga tcgcggtaaa atctttaatt
     7861 atcagtgctt tatgttctat ggcttttata tttttgatta aagatgaaag tttaaaggtt
     7921 attgcagtag cactttcaag ctctattagt gctttttatt tgcttggagc taatatcaaa
     7981 gaatttggtt ttaagaaatt ttttgcttta atatctatta aaatttgctt attggttata
     8041 gttgctttga ttatttttac aatcttactt attttggtta aaccttatat tttaagtttt
     8101 tttataggaa tttttacaag ttttaaagga gttttttaat gagattatta gacagtgtaa
     8161 caaaagagaa aataaaactt gataaaaaag atattagtat ttatttatgc gggcctacgg
     8221 tttatgatga tgcacattta ggacatgcaa gaagtagtgt ttgttttgat cttttgcgta
     8281 gggttttact tgctcagggc aatagggtaa aatttgctag aaattataca gatattgatg
     8341 ataagatttt gaaaaaaatg gctcaaagtg gtcaaacttt agaggaaatt acggaatttt
     8401 atattaaaag ttatgaagag gatatgaggg ttttaaatgt attagatcct gattttaaac
     8461 ctcgtgcaac gcattatata acagctatgc ttgatttgat taaaaagctt gctaaggatg
     8521 ggtttgttta tactctagaa gatggaattt attttgatac aagtaaagat gaaaaatatt
     8581 taagcctatc aaatcgcaat ttagaagaaa atatctctcg tctaagtaat gaagtgcaaa
     8641 aaagaaatga aagcgatttt gtgctttgga aatttgatga aaatttttac gaaaatgaat
     8701 ttggcaaagg gcgcccaggt tggcatactg aatgtgttgc tatgattgat tctatttttg
     8761 aaaatactct tgatatacat gctggaggga tagatttgct ttttcctcat catgaaaatg
     8821 aagctgcgca atgtcgttgt ggatgtaaga gaaaattagc aaatatttgg cttcataatg
     8881 gttttgtaaa aatcgatggc gaaaaaatga gtaaaagttt aaataatagt tttttcataa
     8941 aagatgcttt aaaagaattt atgggcgaag ctttaagatt ttatcttttg agttctcatt
     9001 atagatctca ttttaattat tctttattgg atttagaaaa tgctaaaaaa cgtttagata
     9061 aattttatcg ccttaaaaaa agattggatt taggtgaaat ttctgatttt gatgttttaa
     9121 atgatattga aataaaaagc gaaattgcta agcaaatttt agagatttta aatgatgatt
     9181 taaacgtttc taaagcctta gctcttttag atgattttat aaataatgca aatttagagt
     9241 tggataaaga aagcaaaaat aaaattttaa aacaaaatat caaagaagct ttaagtgagc
     9301 tagctaaaat ttttggcttt ggttttatgg atacaacttt atattttcaa tggggtgtaa
     9361 gcaaagaaga acgagaagag attgaaaagt taattttaga aagaactgag gctaagaaaa
     9421 gcaaagattt taacacagct gatacaataa gggaacaact aagtagtaaa aaaatcactc
     9481 ttttagatac tccaaatgga acaatttggg agaaaataaa tgcataatga gatgaattta
     9541 aaagaggttt taatacgctt taagcccttt tataaaagat attggaagca atttgctata
     9601 gctatttttg gtatgatttt agcaagcgga ggaactgctg gaagttttta tgctttagag
     9661 cctattttaa attatatttt cgttgaaaaa aatgaagctt tactttatac agtgcctttt
     9721 ttgctagtat tgatgtattt ttttaaaaat cttggaactt atctacaaag tttttatgtt
     9781 tcctttatag gaacagatat gttaagagta ttgcgtgcta gggttttaaa aaatgtttta
     9841 cgcttggata tggatttttt taaacgctat agaagcggag agcttgtaag tcgttgtact
     9901 aatgatatta atgcacttca aagtatagta tcaaatatta ttcctgattt ttttagagag
     9961 cttttaactg ctataggact gcttgcggta gtcttgtatc aaagtcctac tttggctttt
    10021 tttgctttag tgattttgcc tttagctatt tttcctttgg tatggtttgc taaaaaactt
    10081 aaaaaatatg caagaaatat acaagaaaca aattcggatt tactttctta tttgggtgaa
    10141 attttttcaa atattgaatt gatcaaagct aatgataatg aaaaaaaaga aagtgataaa
    10201 ttttctaagc ataatgatat tttatgtaaa ttaaacctaa aatccgcacg tattgatgca
    10261 cttacaagtc ctttaatgga tatgatgggt tctgttgggg ttgctgtggt gattattgta
    10321 gggggtagag aggttatcaa tggttctatg agtgtgggaa gttttatcag ttttgtttcg
    10381 gcactttttg cgatatatac tcctttaaag cgtctttcgt ctttatatgg aaaacttcaa
    10441 ggtgctgttg cggcaagtga aagaactttt tatttattgg atttagaacc tcaaattaaa
    10501 ggtggaagca aagaattaaa aaacattgaa aaaattagct ttgaaaatgt tgaatttgct
    10561 tatgaaaacc cgcataaaag tgttttaaaa ggcgtaaatt ttgattttgt taaagggcaa
    10621 atgcttgctc ttgtagggac aagtgggggt ggcaaatctt ctattattaa tcttttgatg
    10681 tatttttatg aaaagcaaaa aggtaaaatt ttactcaatc aagaagatat tagcactttt
    10741 accatagaaa gcttacatgc taaaatagga cttgtaacgc aaaatattta tctttttaat
    10801 gatagttttg ctgcaaatat tgcttatagc gaagagttag aagaagaaaa agtcatccaa
    10861 gctttaaaat tggccaatgc ctatgaattt gttaaagaaa tgggcgggat ttgggctgaa
    10921 gtgaaagaac atggtaaaaa cttaagtgga ggacaaaaac aaagaatagc aatcgctaga
    10981 gctttatata aaaatcctga tgtgcttatt tttgatgaag caacttcagc tttggataat
    11041 gaaagtgaaa aagcaatagt taaaactata gaaaatttaa aacaagacag attgatttta
    11101 gtggttgcac atcgtttaag cactatagaa aatgcagata aaatagtagt attggataag
    11161 ggtaaggtat tggcaatagg taaagatgaa gagcttttgc aaacttgttc tttgtatcaa
    11221 aaatttaaaa gcaaagaaaa aacaaagcct agctttagtt aattttagtt agaattttaa
    11281 aaaggattaa aaaatggctt atgaaatgat aaaaccttta ctttttaagt taaaccctga
    11341 gtatacacat gctttggttg aatgtagctt aagggcttta agtgctagtt ttccaggagc
    11401 tttaagtttt ttagcacaca aatatatagt tgataatgag agtttaaggc aaaatttact
    11461 tggacttgat tttaataacc ctgtgggttt agcaggaggc tttgataaaa atgctactat
    11521 gataagacct ttgagtgctt taggatttgg ctttttagaa gtgggaactt ttactccaaa
    11581 acctcaagaa ggcaatgaaa aaccacgtct atttagactt gtaaaacaag aaagtataca
    11641 aaatgctatg ggttttaaca acgaaggtgc tgaaaagatt gctttaagac ttgcaaaaac
    11701 ttatcctttt gttttaccct taggagtaaa tatagggaaa aataaaatca ctccaaatga
    11761 taaagccttg gaggattatt ttactttgtt tagagatttt aaggatttat gtgattattt
    11821 tatcgttaat atctcatctc ctaatactaa aaatttaaga gagttacaaa atgatgattt
    11881 tttaaatacc ttgcttgaag aagccaaaaa aattacttct aagcctattt tgataaaaat
    11941 tgctcctgat atgaaaatag atgatgcttt aaatttatgt gaaaatgcta ttaaaaaagg
    12001 tgcagatggg tttatattag ccaatactag tgttgattat agcttactag ataataatcg
    12061 tacttttggt ggtattagtg gaaggttgat tacagaaaaa agtggtattt ttttcaaaga
    12121 agtagctaaa attctttttg gcaaaacctt gcttattgca agtggaggga ttgatagtgc
    12181 tgatattgct tatgagcgta ttaaaaatgg ggctaatttg gtgcaagttt atacagcttt
    12241 gatttttaaa ggtccttctt tggtaaaaaa tatcaatcaa aatcttatag agcttttaag
    12301 aaaagatggt tttttacaca ttagcgaagc tgttggggta aatttaaaat gattgcttat
    12361 gaaaaaattc aattaaaaaa caagcttgaa gtttatgctt tgcctgtaaa taaaaatagc
    12421 gatgtgatta gcgttgatat tttttataaa gtaggttcaa gaaatgagat catgggaaaa
    12481 agcggcatag ctcatatgct agaacattta aattttaaaa gtactaaaaa tttaaaagct
    12541 ggcgaatttg atgagattgt taagggtttt ggtggtgtgg ataatgcaag cacaggtttt
    12601 gactatactc attattatat taaatgtgcg aagaaaaatt tagataaagc tttggaactt
    12661 tttgcagaac ttatggcgaa tttaaattta aaagatgaag aatttcagcc tgaaagagca
    12721 gtggttttag aagagcgtag atggagaaca gataataatc ctttgggata tctttatttt
    12781 agacttttta atcatgcatt tatgtatcat ccttatcatt ggactcctat aggttttttt
    12841 aaagatatag aaaattggag tattgaagat attaaagaat ttcacagtat ttactatcaa
    12901 cctaaaaatg cgattttact tgtaagtggc gatatagaaa gtaaagaagt ttttgagctt
    12961 tcaaaaaaac attttgaaaa gattaaaaat actaagacta tgcctaaaat tcacacaaaa
    13021 gagcctaagc aagatggagc aaaaagaata tatttgcata aaaactcaga tactgaacta
    13081 ttagcccttg cttataaaat tccaaatttc aagcacaaag atatacctgc tttaaatgct
    13141 ttatccgagc ttttaggaag tgggaaaagt tctttaatga gtgaaatttt gattgataaa
    13201 ttaaatttaa tcaatgatta ttatgcttat gttaatgatt gtatagatga aaatttattt
    13261 atttttattt gtaattgtaa ccccaatgtt aatgcagaaa aagtagaaaa agagctttta
    13321 aaaatcattg ataagcttaa aatgggtaaa atttctcaaa aagatttgca aagagtgaaa
    13381 aataatgtca aaagcgattt tattttctca tttaacaatg ctagtgcagt ggcaaatatt
    13441 tatggttcat atctagcaag aggagatatc aatcctttgt taaattatga gaaagatata
    13501 caaaatttgg aattaaaaga tttgatttct tgtgctaaaa aatattttat tcaagaaaat
    13561 tcaactacgg taattctaag aaaggattca aatggataaa aatattatta ttggggcgat
    13621 gacggctctt attacaccat ttaaaaatgg aaaagttgat gagcaaagtt atgcaagatt
    13681 gattaaaaga caaatagaaa atggcatcga tgcagtagtt ccagtaggaa caacaggaga
    13741 aagtgcaact ttaacccatg aagaacatag aacttgcata gaaatagccg ttgagacttg
    13801 caaagaaact aaagttaagg ttttagcagg tgcgggaagt aatgcaactc atgaggcagt
    13861 gggtttggct aaatttgcta aagagcatgg tgctgatggg attttaagtg tggcaccgta
    13921 ttataataaa cctacacaac aaggacttta tgagcattat aaggctattg cacaaagtgt
    13981 agatattcct gtgcttttat ataatgttcc aggaagaaca ggttgtgaaa tttcaacgga
    14041 tactattatc aagcttttta gagattgtga aaatatttat ggagtaaaag aagcgagtgg
    14101 aaatatcgat aagtgtgtgg atttgcttgc gcacgaacct agaatgatgc ttatttcagg
    14161 ggaagatgcg atcaattatc ctatactttc gaatggcgga aagggagtga tttcagtaac
    14221 ttcaaattta ttacccgata tgattagcac tttaactcat tttgctttag atgaaaatta
    14281 taaagaagct aaaaaaatca atgatgagct ttataatatc aataaaattt tattttgcga
    14341 aagtaatcct attcctatta aaacggctat gtatttagct ggattgatag aaagtttgga
    14401 atttagactt cctctttgtt ctccaagtaa ggaaaatttt gctaaaattg aagaagtgat
    14461 gaaaaaatat aagatcaaag gattttaatg aatacagaat ttcaaggaaa aactttagtg
    14521 attagcggtg gaactcgcgg gataggcaaa gctatagttt atgaatttgc taaagtgggt
    14581 gcaaatatag cttttactta taattctaat gcgcaaattg ctgatgaaat ggttcaagat
    14641 ttggagaaaa attataaaat caaagctaga gcttatgagt ttaatatttt agaacctgaa
    14701 acttataaag aactttttga aaaaattgat gtggattttg atagagtgga ttattttatc
    14761 tcaaatgcta tcatttcagg acgtgcggtt gtaggtggct atactaaatt tatgaagtta
    14821 aaaccaaagg gaattaataa catttttaca gccacagtaa atgcttttgt tgtgggcgca
    14881 caagaagcag ctaaaaggat ggaaaaagta gggggtggaa gcattatttc tatctcatct
    14941 acaggaaatt tagtgtatat agaaaattat tcaggtcatg gtacagcaaa agccgctgta
    15001 gaagctatgg caagatatgc ggctactgaa cttggagaaa aaaatatccg tgtaaatgtc
    15061 gtaagtggtg ggcctattga aactgatgct ttaagagctt ttacaaatta tgaagaagta
    15121 aaacaggcta ctataaattt aagcccttta aatcgcatgg ggcagcctga agatttggct
    15181 ggagcatgtc tttttctttg ctcaagtaag gcaagttggg tgacaggaca tactttcatc
    15241 gttgatggtg gtacaacttt taaataaaaa ttaagaaaaa tcaatggatt tttcttaaaa
    15301 atatttttca atcaagtttt aatttccacc ctaaaaaaac acttaataat gcaagtaaaa
    15361 aaataaaatt taaagtccaa ttaccaaaac ctataaaacc tatagataat acgctgtaaa
    15421 aaaatcctcc tacagctga
//
LOCUS       DARGEX010000034        14950 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.034, whole genome shotgun sequence.
ACCESSION   DARGEX010000034 DARGEX010000000
VERSION     DARGEX010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.034"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..819)
                     /locus_tag="SF010_000830"
     CDS             complement(<1..819)
                     /locus_tag="SF010_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229776.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIIVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIF"
     gene            complement(816..1394)
                     /locus_tag="SF010_000831"
     CDS             complement(816..1394)
                     /locus_tag="SF010_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229777.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYTIFLLKEN
                     INDLNNTAFQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            1538..1822
                     /gene="gatC"
                     /locus_tag="SF010_000832"
     CDS             1538..1822
                     /gene="gatC"
                     /locus_tag="SF010_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG8229778.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            1890..2453
                     /locus_tag="SF010_000833"
     CDS             1890..2453
                     /locus_tag="SF010_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG8229779.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSAFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            2455..2928
                     /locus_tag="SF010_000834"
     CDS             2455..2928
                     /locus_tag="SF010_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG8229780.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCSDCNNQKAKVKI"
     gene            2929..4434
                     /gene="lysS"
                     /locus_tag="SF010_000835"
     CDS             2929..4434
                     /gene="lysS"
                     /locus_tag="SF010_000835"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG8229781.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMVNFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            4431..5675
                     /locus_tag="SF010_000836"
     CDS             4431..5675
                     /locus_tag="SF010_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG8229782.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLILMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            5672..6217
                     /locus_tag="SF010_000837"
     CDS             5672..6217
                     /locus_tag="SF010_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG8229783.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            6231..7067
                     /locus_tag="SF010_000838"
     CDS             6231..7067
                     /locus_tag="SF010_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG8229784.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAVELAKIRKDIAKDAFSFT
                     LK"
     gene            7064..7852
                     /locus_tag="SF010_000839"
     CDS             7064..7852
                     /locus_tag="SF010_000839"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG8229785.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKKRFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(7927..8826)
                     /locus_tag="SF010_000840"
     CDS             complement(7927..8826)
                     /locus_tag="SF010_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEG8229786.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSNTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            8916..9731
                     /locus_tag="SF010_000841"
     CDS             8916..9731
                     /locus_tag="SF010_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG8229787.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            9800..10582
                     /locus_tag="SF010_000842"
     CDS             9800..10582
                     /locus_tag="SF010_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG8229788.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            10566..12557
                     /locus_tag="SF010_000843"
     CDS             10566..12557
                     /locus_tag="SF010_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG8229789.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            12550..13275
                     /locus_tag="SF010_000844"
     CDS             12550..13275
                     /locus_tag="SF010_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG8229790.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            13303..>14950
                     /locus_tag="SF010_000845"
     CDS             13303..>14950
                     /locus_tag="SF010_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8229791.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFISKQDLLKALKILEKISK
                     NTEIFDFILQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRIL"
BASE COUNT         5229 a         1782 c         2793 g         5146 t
ORIGIN      
        1 aaaaatagca aattcaaatt ttttttccgc aatttttctt aagttataat cagttttaat
       61 aatagtgcca tctttttcta gtataaaaat accatcatcg ctaagtgcaa catcttttat
      121 gtcagcatca agataaagag ttctagcggg gcttacaata atgatttttt tagctgttgc
      181 tgctataagt ttatctccga ttacgcttag atggattaca ttgttgaaaa aattttctgc
      241 cgaaataacc acgtctttaa tgacttgaag attgtttctt gaaagaatta aaattttgcc
      301 atctagcgtt ggatatacga tgatattgtc taaaaatata ggattagcgg tacgactgtc
      361 ttgagctgga gctgaggtta gggtttgact aaatttaata cccaaagaac gatttgcaag
      421 aactatagta ttatttgcaa gtacaagggc taaatcatct ccattagaag ctactcctac
      481 aacactagcg tcaaattgaa aattataaat ttcattataa gaattgtcaa aaatttttaa
      541 atttccatta ttatctgcag taaaatattc cccatcttga taagctagaa gcatataatt
      601 tttaggaagt ttaaacttgt ctatggaaat attatttttt aagatagctg tattattgct
      661 aagttttgca gaaactagat tccaatcaac gattttactt tttaaattgc tattatgact
      721 taaatctcca tcggtttgtt ttggttcaaa atattgtctt ttggtgccac aagcacatag
      781 aaatattaaa caaaatagtg ttaaaaatat ttttttcatt gtgtaatgcc ttgataatgt
      841 ttgagatttt tagctatttg atttaaactt gaattttctt ttatctgaga aagtaaaaca
      901 ttagcttctt cgattttatt ttgctctaaa agtttgtaag cttctaataa tttatcataa
      961 ttttttaaaa atattgattt atctcctaaa gataatgcaa taatattttt aagtaaagtg
     1021 tttgtttgag cattattata aatttgtttt agttcatttt gaaaggctgt attattaaga
     1081 tcattaatat tttcttttag taaaaagata gtgtaaagat tagtattttt atttttaagt
     1141 tgttctaaaa gatttttatt gctaggatct tgtattagat tggcataaat ttcatttgct
     1201 tcttttgttt tataatcgtt tatttttgag attataaaat ttccagcaaa ccaagcaact
     1261 aaaattatca caacagcaga tatataaaat ttatacttgc gtataaatct ctctcctttg
     1321 ataaaatttt ctataaattg ttcttctgtg ttaagttcat ttttaacagc ttttaaatta
     1381 tcttttagtc ccaaaattta tccttgaaaa aatattttta tttttgtata gaaaaattat
     1441 gatattgtat catataaatt gcaaaatatc ctaaacaatt taaagctttt tatgatataa
     1501 ttttcaaaat tttaactttt ttattaaggt ttaagaaatg caaatagatg agaaattatt
     1561 aagcaagctt gaaaaattaa gtgctttaca aataacaaaa aacagaaatg aaactattgc
     1621 acagttaagt gaaattgtga attttgttga aaaattaaac gaacttgatt tagattccca
     1681 agagattact gtgagtacta taaaaggtgg agctcctttg aggattgatg agataagaaa
     1741 tagcaatgtt attgatgagg ttttagattg tgctccaaaa aaacaagaac atttttttgt
     1801 tgttcctaaa atcatagaat gattaactta gcatttagtg cttatttgta gaataaattt
     1861 aaaacaaaaa aaatcagaga gtgattgaaa tgaattttta ttggtttgat gcttttattt
     1921 taggatttac cttgctttta gggcttaagg gtattatcaa tggtttgata aaagaaattt
     1981 ttggactttt gggtattatt ggtggtgttt ttattgcttc aaaatatgca actcaagcag
     2041 ctgaatttat acaaagtgct ttttataaga tagaaaatca aagcttagct ggatttgctg
     2101 gatttttggc catattaatt attttttgga tagtttgttt attggtgggt aattttcttt
     2161 ctaagttgat taaattaagt ggcctaggtt ttttagatcg tattggtggc tttatatttg
     2221 gtggagcaaa aatcttttta atttttgcaa ttttggtttt ttgtgtagca agaatcgatt
     2281 ttttaaatga taaattagat aattttgcta aaaatagcta tactttaaat ttacttaaag
     2341 aaacgggatc ttttattatg aatcaacctt taacagaaaa tagtctagat catgctaatg
     2401 aaaagttgca agatattgta agtgatttaa acaatactca aaaaggggag tgatatgctg
     2461 atagagaatg tggaatatga tgttttactt gagagattta aaaaaatatt aagacaaggc
     2521 ggacttaaat atactaagca aagagaagtg cttttaaaaa ctctttatca cagtgatact
     2581 cattacacac ccgaaagttt atatatggaa atcaaacaag ctgaacctga tttaaatgta
     2641 ggaattgcaa ctgtttatcg tactttaaat ttgcttgaag aagcagaaat ggtaacttcc
     2701 atttcttttg gttcggcagg taaaaaatac gagcttgcca ataaacctca ccatgatcat
     2761 atgatatgta aaaattgcgg aaaaattata gaatttgaaa atcctattat agaaagacag
     2821 caagccttga ttgcaaaaga acatggtttt aaacttacag ggcatttgat gcagctttat
     2881 ggtgtttgta gtgattgtaa taatcaaaaa gcaaaggtaa aaatataaat gtttgataat
     2941 attttagagc agcaaagaat agaaaaagct aaagagttaa aaaatttagg gattaatcct
     3001 tatcctcatt ttttagaaaa ggaaatgtct ttaaagactt ttaaggataa attttcttat
     3061 attttagagc aagttgaaaa aagagatgaa agtgtcaatg ctgttgttgc aggacgtttg
     3121 aaacttttgc gtatagctgg gaaatcaatt tttgcaaaca ttgaagatga ggatacaaat
     3181 ttacaaattt attttagtaa agatagcgta ggcgaagagc tttatacgat tttaaaaaag
     3241 aatttagagg tgggtgatat tgttttggtt aaaggttttc cttttgtaac taaaacaggt
     3301 gaatttagtt tgcatgcaag cgaagtaaaa ctcgctacaa aagctattgt tcctttacct
     3361 gaaaaatatc atggattaac agatattgag caaagatatc gtaaacgtta tgttgatatg
     3421 ataatgaatg tcgaagttag aaaagatttt ttagtgcgtt ctaaagtggt gagtttaatc
     3481 cgtcattttt ttgaaaataa aggcttttta gaagtagaaa ctcctatgat gcatccgatt
     3541 gcaggtggag caaacgctaa gccttttgta acttttcata attctttagg cgtagaaaga
     3601 tttttaagaa ttgctccaga actttatctt aaaagactta tagtaggtgg ttttgaggcg
     3661 gtttttgaaa tcaatcgttg ttttagaaac gaaggtatgg atttaactca taatcccgaa
     3721 tttacaacta tagaatttta ttgggcctat cataattata aagatttaat ggatttaacc
     3781 gaagaacttt ttgctttact tttggataaa cttaatttag gaaaaacaat agaatttgat
     3841 ggaaaaatgg taaatttttc caaacctttt gaaagaataa cctataaaga cgcactttgt
     3901 aagtatggtg gtttagatag ggatttaatc gaagataagg aaaaaattct tactaaatta
     3961 aaagcagatg gttttgaagc gaatgaaaag cttgaacttg gacatttgca agctgaactt
     4021 tttgacaatt atgtggaaga aaaattgatc aatcctactt ttgtgattga ttttcctatt
     4081 tccataagtc ctttatcaag acgtagcgat gaggattctc agattgctga gagatttgag
     4141 ttgtttattt gtggaagaga attggcaaat ggttttaatg aacttaatga tcctcttgat
     4201 caatatgaga gatttttaaa acaaattgaa gctaaaaatg caggcgatga agaggcttgc
     4261 gaaatggatg aagattttgt aaatgctttg ggttatggaa tgcctccaac ggcagggcag
     4321 ggtataggca tagatagact tgttatgctt ttgacgaata aaaaatctat tcgagatgtg
     4381 atattgtttc ctgcaatgcg tccattaaaa tcagaactaa aggagaaaga atgagtttag
     4441 aaatgtttga taaagaaatt tttgatttga caaacaaaga gttagagcgt caatgtgaag
     4501 gtcttgaaat gatagcgagt gaaaatttca ctttgcctga agtaatggaa gttatgggaa
     4561 gtattttgac aaacaaatac gcagagggtt atccgggtaa aagatattat ggtggttgtg
     4621 aatttgttga tgagattgaa actctagcta ttgaaagatg taaaaaactt tttaattgta
     4681 aatttgctaa tgttcagcct aattcaggtt ctcaagctaa tcaaggtgtt tatgcggctt
     4741 tgattaatcc aggtgataaa attttaggaa tggatttaag tcatggtgga catttaactc
     4801 atggtgcaaa agtaagttct tcaggtaaaa tgtacgaaag ttgtttttac ggcgtagaac
     4861 ttgatggaag aattgattat gaaaaagtaa gagaaattgc taaaaaagaa aagccaaaat
     4921 taatagtttg tggagctagt gcttatgcaa gagtgattga ttttgctaaa tttagagaaa
     4981 tcgctgatga agtaggcgcc tatctttttg ctgatatagc acatattgca ggtcttgttg
     5041 tagcaggcga acatccaagt ccttttccac acgctcatgt agtaagttca actacgcata
     5101 aaactttgcg tggcccaaga ggtggtatta ttatgacaaa tgatgaagag cttgctaaaa
     5161 aaattaattc tgccattttt ccaggtattc aaggtggtcc tttgatgcat gtaattgctg
     5221 caaaagcagt aggatttaaa tttaatctta gcgatgagtg gaaagtctat gcaaaacaag
     5281 taagaaccaa tgctcaagtt ttagctaatg ttttaatgga tagaaaattt aaacttgtta
     5341 gcgatggaac ggataatcac cttattttaa tgagtttttt agatcgtgaa tttagtggaa
     5401 aagatgcaga tttagctctt ggaaatgcag gtattactgc aaataaaaat accgttccag
     5461 gagagattag aagtcctttt atcacaagtg gattaagact tggaactcca gcccttactg
     5521 ccagaggttt taaagaaaaa gaaatggaaa ttgtgtcaaa ttatattgca gatattttag
     5581 atgatattaa taatgaaaaa ttacaaaaga atattaaaca agaattaaaa aaacttgcaa
     5641 gtaattttat tatttatgaa agggctatgt tttgatttca ccaatggata tgtcgctaat
     5701 taaaataatt ggcgatcatt attatataag acgcgataaa attgtaaata aaattacaca
     5761 tagaggtcgc ttattttttg ataaatttga aagagttgat gctcctttaa atttaaatgt
     5821 catgagagaa cacgctgcta aaaaaattgt tgtcgctcat gatttaataa caaaagataa
     5881 taaagtagaa aatattgtct ttgattataa tggttttaat gctgaaagat tttatcaccg
     5941 tgcacaactt attttaagag aagaaggttt tataaatttc acagcctata agactaaaac
     6001 tccaggacat ttacatcttt atattcataa aggacatacg gcgttaaacg aaggttattc
     6061 tttagcgtct aaactttcaa tgatgtttgc aagtaaaatg ccagtagaat ggaaggtgtt
     6121 tcctagcatg gatgtaccta gggaatttaa tattttaata ttgccttatg aggtttatca
     6181 aaaagaacga ggaagttctt ggtctaagca tatgtaagaa aggacaaatt atggaaaatc
     6241 aaaaaaatga atttgatgat attattttag aaaaaagtaa taaaagtgaa aaagtaaaaa
     6301 aaattctttt acgagttatt gctttagtta ttttgttttt agctatcatg atagttatga
     6361 agcttattaa tggtagtggt gatgaaaata cgcaaaatca aagtgtattg ccaagtgaac
     6421 ctatagcaac tcaagacaat aacaatgata cttcttttga aagtatgcca attacagata
     6481 atacttcagc agaagatcaa tttgaggcat taagaaaaca atttcaagat gaacaaaata
     6541 caactcaaaa tacaacaacc tctagttcaa ataacaatga tactacaaat tttgctatgc
     6601 ctgatcaaga agttccagca gaaccaacag caactacttc agaaaatacc actccacaag
     6661 caagtactcc taaacaagaa gtaacacaaa ctgcaaaacc taaagaagaa gcaaaaaaac
     6721 aaacagctgt aaaaaaagaa aaagaaagtg caaaacaaac ccctaaaaaa gaacaaaatg
     6781 caaatgattt atttaaaaat gttgatgcta aacctgtaca tccaagtggt ttagcatcgg
     6841 gtatttatgt gcaaattttc tcagtaagta atttggatca aaaatcaaaa gaacttgctt
     6901 ctgtaaagca aaaaggttat gattataaac tttataaaac tacagttgga ggtaaagaaa
     6961 ttaccaaggt tttaatagga ccatttgaaa aggcagatat tgcagtagaa cttgctaaaa
     7021 tccgtaagga tattgcaaaa gatgcttttt cttttacttt aaaatgaaat ttttagcagt
     7081 tataggcgat cctatttctc actctaaatc gcctagaatg cataataatg ctattaaagc
     7141 cttagggctt gatagcattt atacacgcta tcatttaaga aatgctaact gtttaagaga
     7201 agattttttt aaattaggac ttagtggagc taatattact ttgcctttta aggaaaaagc
     7261 tttagatatt gctgatgtga aggatgattt tgctagaaat attggctctg caaatacttt
     7321 atgcttaaaa gaagataaaa tttacgctta taatactgat gctttaggtt ttttagaagc
     7381 tattaaggat tttgataata taaaaaaagc tttgattttg ggtgctggag gtacagcttt
     7441 ggcgcttgct tatgcattaa aacaaaaagg cgtagaagtg tatatagcta atcgtagtaa
     7501 aaaaagattt aaagattttt tagcttatcc aacttatctt tataaaaact tgcaagattt
     7561 tgactttgat ttggttataa attcaacttc tgctggatta aaagatgaaa atttaccttg
     7621 tgatagagag cttttagata gaattttacc taaagctaaa tttgcttttg aggtaattta
     7681 tggcagagaa acaccttttt atagattgtg taaagagtat catttaaaaa ttaaagatgg
     7741 acttgatatg cttttatggc aaggagtttt tgcttttgaa cttttttttg aaatacaaga
     7801 taaaagagag atgataaaaa atgcaatgca acaggcattg attttaaagt agaatgatag
     7861 ttatttttct tgtataagaa aatcttattt tttgtgtgag aaagtttaat tttcccacaa
     7921 gttttatcat tcaaatattt ctaccccatc ttgattttta ctttgattat tttgatttgt
     7981 tgaagatgga tttgtaggaa tattttgtgt aggcgtgttt tcaattgtat tattttgatt
     8041 agaatttgtt tgaggtaagc tttcttcaaa ggtagcatcg ccatcaaaac tattaaaacc
     8101 actgtttgta ttaggtatag ttttgcctat gtctgttgct tttggtagat tgttataaag
     8161 tgtatttaat gtatttttat aaaaagctaa aaaactttta tcaatttcaa aagcaggttg
     8221 ctctaaacct ttattgagtt gagttggtac ggtagagata gtagttttaa acatattaac
     8281 cccatcatca tttttaatag gatagttaag cgcaactaaa gaatctagtt tagtgttact
     8341 tgaaagatta gttgaatttt gtggattgtg tgcatctata aaatctattt tacctttaaa
     8401 atttatacct aaattggatt ttacataatc tccactcata aaattgcttg ttttttgtgc
     8461 atttttttct tccgtataaa tactgattga acttttaaga gtgtagtctg gattagtagt
     8521 aactatttta tagcctttta gttgagcgat ggttttgatc tgctcttcta aattttgttt
     8581 taaaagatca atttcttttt ctatgcgaat tttaagcact gaattttcaa aataatcaga
     8641 ataattgtta ttttgttcta tattaatagg ctcaagagca atgcttactc cagaatcaat
     8701 aggttcaacc tttgttggaa cttggggttt aaaatttggc atagaaacat tgacaaaatt
     8761 actgcttgta cccccacaag ctgctaaaat taacatacta ctagcaagta aaatatattt
     8821 tttcattttt tacctttatt taatgtgttt gtgttaatta tagcaagtta aagttttttt
     8881 gttatatttt tataaaagaa aattaggaaa gatatatgga attttggcag catatttatt
     8941 caaattttaa tgttatagct tttagcatct ttggtttaaa ggtgcattgg tatggcatta
     9001 tgtatgttat agctttgctt ttggctttgc ttttggctaa attttttgta agaaaatttc
     9061 aactagacat taatgaaaaa catttggata gttattttat atgggttgaa ataggggtta
     9121 ttttaggtgc aaggcttgga tatattttga tttatgatgc aaatactatg tattatatta
     9181 ctcatccttg gcaaattttt aatccttata ttaatggtga atttgtaggt attcgaggta
     9241 tgagttatca tggagcaatt ataggatttt tgatagctac tttattgttt tgtaaaaaat
     9301 ataaaacaaa tccttggatt tttcttgatt tggttgcttt aagtgttcca ttggcttatg
     9361 tttttggtcg tataggaaat tttttaaatc aagagctttt tggtcgcatt acaaatgtgc
     9421 cttggggaat ttatgttgat ggagtattgc gccatccatc gcaactttat gaagcatttt
     9481 tagaaggtat tgttgttttt attatagttt atttagcaag atttaagcaa agttttcaag
     9541 gggaattgat tcttgtgtat gctggtgctt attcattggc aagatttata tgtgaatttt
     9601 atcgcgagcc tgattttggt ataggttttg ttttatgggg tatgagtatg gggcaaattt
     9661 taagttttat aatgtttata acagctttgt tagtttatat ttgtataaag tttaaaaaag
     9721 taaatattta atctatctta aagacttttg taatataatg aaatggattt ttttaatttc
     9781 tttttacaaa ggagtaaaga tgcgtgagct tatcgaaggt tatttgggta agagcattga
     9841 gggcaaaaaa agtaaaatgc ctgcgaaatt agactttatc caaagcgcct cagggctttt
     9901 tttaggtctt tttatgtggg tgcatatgct ttttgtttct acaattttag tcagtgagga
     9961 tttttttaat tctgtggtac attttttaga attaaaattt gtttacgata atcctgttat
    10021 gagttatctt acttcatttt tagccgcctg tgttttagtg gtttttttcg ttcatgcttt
    10081 acttgcaatg agaaaatttc ctattaatta ccgtcagtat caaatactaa gaacacacag
    10141 taaaaaaatg aatcacagcg atacttcgtt atggtgggtt caagctttta caggttttat
    10201 tatgtttttc ttaggttctg ctcatcttat ttttattgta accaatgcag ataaaatcag
    10261 cggcgatatg tcaggagata gggttgtaag tcattttatg tggctttttt atgctgttct
    10321 tttagtctgt gttgaacttc atggaagtat agggctttat agactttgtg ttaaatgggg
    10381 ttggtttgaa ggaaaaaatg taaaagaaag tcgcaaaaag cttaaaactg ctaaatggat
    10441 aatcagtatt ttcttcctag ttttaggtgt gttaagtctt gcagcattta taaaaatagg
    10501 ttatgaaaac taccaaaatc aaacccaaac tactgcgatg ataaaaaact acaatggagc
    10561 aaattatgaa tatacaatat agtgatgctt tagtaatagg cggaggatta gcaggtctta
    10621 gagcggctat tgaagtagca aagagtggcc aaagtgtaac acttttaagt atttgtccag
    10681 tgaagcgttc tcactctgca gcggtgcaag gaggtatgca ggcaagttta gcaaatgggg
    10741 caaaaggtga gggtgataat gaagatcttc actttgcaga tacagtaaaa ggaagtgatt
    10801 ggggctgtga tcaagaagta gcaagaatgt ttgctcaaac tgcgccaaaa gcagtgcgtg
    10861 agcttgcggc ttggggtgtg ccttggacta gagttactaa aggtccaaga actgttgtaa
    10921 tcaatgcaca aaaaactgtg attgaagaaa aagaagaagc gcacgggctt attaatgcta
    10981 gagattttgg tggaactaaa aaatggagaa cttgctatat cgcagatgca acagggcatt
    11041 gtatgcttta tggtgtagca aatgaagcta ttaaacatca agtaaaaatt attgatagaa
    11101 tggaagcagt aagaattatc catgatggta aaaaatgctt aggtgtgatc gctagagatt
    11161 taactaatgg acaactcatt gcttatattg caagaggaac catgatagca acagggggct
    11221 atggtagaat ttataaacaa actacaaatg cggtaatttg tgaaggaaca ggtgcagcca
    11281 tcgctcttga aacagggctt tgcagacttt caaatatgga agcagtgcaa tttcatccaa
    11341 ctcctattgt gccaagcggt attttgctta ctgagggctg tcgtggtgat ggtggaattt
    11401 tacgcgatgt ggatggatat cgttttatgc ctgattatga accagagaaa aaagaacttg
    11461 caagccgtga tgtggtaagt cgtagaatga tggaacatat tcgtaaaggc aaaggtgtaa
    11521 aaagccctta tggggatcat ttatggcttg atatttctat acttggaaga gctcatgtgg
    11581 aaaaaaatct ccgcgatgta caagatattt gtaaaacttt taatggtatt gatccagcag
    11641 atgagggtcc aaaaggttgg gcgccagttc ttccaatgca gcattattct atgggtggaa
    11701 ttagaactaa accaacgggt gaaagtcaat ggttaaacgg actttttgct tgtggagaag
    11761 cagcttgctg ggatatgcac ggatttaatc gtttaggtgg aaattcatgt gctgaaactg
    11821 ttgtagcagg tatgatagtg ggagattatt ttgcagatta ttgtaaaaat aatggtgaag
    11881 taattgacac aaatgtagta aaagacttct taactaaaga gtatcaatat ttaaaatctt
    11941 tagtagataa agaaggtaaa cataatgttt ttgaaatcaa aaacagaatg aaagaaatca
    12001 tgtgggataa ggtggccatc tttagaacag gtgaaggttt gaaagaagca gtagatgaac
    12061 ttgaaaaact ttataaagat tctcaagacg ttaaagtaca ttgtaaagaa cttgattgtg
    12121 caaatccaga gcttgaagaa gcgtatagag tgccaagaat gttaaaaata gcactttgcg
    12181 tagcttatgg agcgctttta agaacagaaa gtcgtggggc gcattatagg gaagattatc
    12241 caaaaagaga tgatttaaat tggatgaaaa gaaccaatac tttttgggta gaaggcgaaa
    12301 ccttaccacg catagaatac gaagagcttg atattatgaa aatggaaatt ccaccagcat
    12361 tccgtggata cggtgctaaa ggaaatatta tagaaaatcc tttaagtgaa aaacgccaag
    12421 ctgaagtgga tgctatccgt gaaaaaatgg aagctgaagg caaaggtcgt tatgaaattc
    12481 aaaacgcctt aatgccttat gaattgcaag ctaaatataa agcaccaaac caaagaatag
    12541 gagttgatta tgagtagaaa attgacaata aaggcattta aatacaatcc tttaagcaaa
    12601 atttctaaac cacattttgt gacttatgag cttgaagaaa ctccttttat gacggttttt
    12661 gtatgtttga ctttgatccg tgaaaaaatg gatgcagatc tgagttttga ctttgtttgt
    12721 cgtgcaggga tttgcggatc ttgtgcaatg atgattaatg gagtgccaaa acttgcttgt
    12781 aaaactttga ctaaagatta tcctgatgga gtgatagagc ttatgcctat gcctgcattt
    12841 aggcatatta aagatttaag cgtgaataca ggcgagtggt ttgaagacat gtgtaagcgt
    12901 gttgaaagct gggtgcataa tgaaaaagaa actgatattt ctaaacttga agaacgcatt
    12961 gagccagaag ttgcggatga aacttttgaa cttgatcgtt gtatagagtg tggaatttgt
    13021 gtagcttctt gtgcaactaa acttatgcgc ccaaatttca tagctgctac agggctttta
    13081 agaacagcta gatatttaca agatccgcat gaccatagaa gcgtggaaga tttttatgaa
    13141 ttagtaggcg atgatgatgg tgtttttggt tgtatgtcat tgcttgcttg tgaagataat
    13201 tgccctaaag aattaccttt acaaagtaaa atcgcttata tgagaagaca acttgtcgct
    13261 caaagaaata aataaatctt tccccttttt aaggggaaga ttgtgaaaga attattccaa
    13321 aaaatttggc aaaatgaact ccaattttta aattttgatg ctaaatttca agataaaagc
    13381 aaacttgata cagccgagtg tgcgattatt ttaagtgtca ataaagacaa ttatgaaaga
    13441 tattttctct taaaagaatt tcaagagctt tgcaaaaaaa ttgatttaag agtggatatt
    13501 tttagtatgc aaaatgctca aatttgtatt ttaaatcttt ttaaatcagg ttttatttca
    13561 aagcaagatt tacttaaggc tctaaaaatt ttagaaaaaa tttcgaaaaa taccgaaata
    13621 tttgatttta ttttacaaga aaaagttcaa agtatagatc aaaaagcttt atttcaaaat
    13681 gattttaaag aattgaacac cattaattta gagcttcaaa agctaagttt tgatgaaaat
    13741 ttaaaatcaa gacttcaaaa aactttggaa aaatttcaaa atttagagtt taatatagcc
    13801 atcactggcg tgatgaatgc aggaaaatca agtcttttaa atgctctttt aaaagaagat
    13861 tttttagggg tttcaaacat acctgaaaca gctaatttaa cagtattaag ctatggtaag
    13921 agtgaagaag caaagatata tttttgggat aaaaaagaat ggcaaaatat acttgaaagt
    13981 tcgcacttta atgcagattt aaaagaattt attgataagc tggataagag tgtaaatata
    14041 gaagatttta ttaaagataa acctttgata caaaatatcg cactttgtga gcttaaaaat
    14101 ttcagttctg ctaaaaataa aatttcagct ttaattaaaa aaatagaaat taaaagtcat
    14161 ttagaatttt taaaaaataa tatttctata gttgatactc cagggcttga tgatgttgta
    14221 gttcaaagag aaattgttac aaatgagtat cttagagaaa gtgatttttt aattcattta
    14281 atgaatgctt ctcaaagctt aactcaaaaa gatgcagact ttttggtgca ttgtctttta
    14341 aattcaaggc tgagtaagtt tttaattgtt ttaactaaag cggatttgtt aagcaaaaag
    14401 gatttagaag aagtcattgt ttataccaaa gaaagcttaa aatcaagact tgtggattta
    14461 gatgaaaatt tggttgaaaa gattgatttt ttatgtgtga gtgctaaaat ggcaagtgat
    14521 ttttataagg gtttagcacc taaggaaagt ttgcaaaaaa gtggtatgca agaatttgaa
    14581 aactatcttt ttaacgagct ttatgcagga gaaaaaagca agattgcctt aagagcttac
    14641 aaaaaagaat tacatttgga acttaaaaat attctaagca aatatgaaat gcaaaatcgt
    14701 cttattaagg agaataaaca aggtgtaagt gaagaaaatc aaaagctttt acttgaactt
    14761 caaaagcaaa atatcttatt aaaagaagca caagatgaaa tttcaaattc cattgtaaaa
    14821 cttaaaaata tagataatgg tatagataat cttgttttac ttttggctaa aaaattaaaa
    14881 gaacgcttga tagatgagtt taaatattta aaaaataatg cacaaaagct taatctttct
    14941 cgtattttaa
//
LOCUS       DARGEX010000035        14769 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.035, whole genome shotgun sequence.
ACCESSION   DARGEX010000035 DARGEX010000000
VERSION     DARGEX010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14769
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.035"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(88..828)
                     /locus_tag="SF010_000846"
     CDS             complement(88..828)
                     /locus_tag="SF010_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG8229792.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDDEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(825..1913)
                     /gene="pstA"
                     /locus_tag="SF010_000847"
     CDS             complement(825..1913)
                     /gene="pstA"
                     /locus_tag="SF010_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG8229793.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(1910..2824)
                     /gene="pstC"
                     /locus_tag="SF010_000848"
     CDS             complement(1910..2824)
                     /gene="pstC"
                     /locus_tag="SF010_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG8229794.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(2834..3829)
                     /locus_tag="SF010_000849"
     CDS             complement(2834..3829)
                     /locus_tag="SF010_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8229795.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVKDRKILNDELVKAGKVF"
     gene            4009..4512
                     /gene="ctf"
                     /locus_tag="SF010_000850"
     CDS             4009..4512
                     /gene="ctf"
                     /locus_tag="SF010_000850"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG8229796.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            4555..5931
                     /locus_tag="SF010_000851"
     CDS             4555..5931
                     /locus_tag="SF010_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG8229797.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLTLSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            5932..6942
                     /locus_tag="SF010_000852"
     CDS             5932..6942
                     /locus_tag="SF010_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG8229798.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFVKNSNIKYLVVLLGANDPWDIKKGGSYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKREELNKKIQILNKIYSDEILKNKEIF
                     INTKLFFSVNDQYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            6929..8107
                     /locus_tag="SF010_000853"
     CDS             6929..8107
                     /locus_tag="SF010_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG8229799.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNRSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKNNNVFLDTIAINGAKSDLWLSWNQEVVKKELELLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(8110..9480)
                     /locus_tag="SF010_000854"
     CDS             complement(8110..9480)
                     /locus_tag="SF010_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG8229800.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLGN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(9482..11407)
                     /locus_tag="SF010_000855"
     CDS             complement(9482..11407)
                     /locus_tag="SF010_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229801.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNTQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTFTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(11407..12579)
                     /locus_tag="SF010_000856"
     CDS             complement(11407..12579)
                     /locus_tag="SF010_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG8229802.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(12658..13848)
                     /locus_tag="SF010_000857"
     CDS             complement(12658..13848)
                     /locus_tag="SF010_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8229803.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(13857..14626)
                     /gene="ppk2"
                     /locus_tag="SF010_000858"
                     /pseudo
     CDS             complement(13857..14626)
                     /gene="ppk2"
                     /locus_tag="SF010_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002849683.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
BASE COUNT         4994 a         2610 c         1954 g         5211 t
ORIGIN      
        1 atagaataaa tttggtttat aatcatatta aacctttttt tggaaatttt taattaatta
       61 tatcatcaaa tttccaaaaa ataaatctta tccaaaagca ccgcttaaat aagccttggt
      121 tttttcttgt tttggatttt caaaaaattc tttactttca ccaaattcta taagctctcc
      181 aagatgaaaa aatgctgtat aatcagctac gcgtttgcct tgttgcatat tatgcgtaac
      241 catgatcata gaaagattat ggcttaattc ttttaaaagc tcttctataa cacctgagct
      301 aataggatca agtgcggaag ttggctcatc taaaagtaaa agcttaggtt ttatcgccaa
      361 agctcttgcg atacaaaggc gttgttgttg tccgcctgaa agagctaggg cattttgctt
      421 taatttatct ttaacctctt caaaaagccc tactttttgt aagcaatcca ccactaaagc
      481 ttcttcatca tctttgtttt taatcatacc atgaagcttt ggtgcataag agatattttc
      541 ataaatgctt tttacaaaaa cattaggttg ttgaaaaacc atgcctacat ttttgcgtaa
      601 ggctactaca tcttgatttt taacatcttt tccttcaatt tctactaaac catcgatttt
      661 tgcgatttta tcattcattc tgttaaaaca acgcaaaaaa gtggatttac cacatcctga
      721 agcaccgatg agtgcggtaa ttttgttttg ttctatttgc atattgatat caaacaaagc
      781 ttgttttttt ccataaaata aatttaaatt tgttgttttt gctatcactt taattttcct
      841 tgaaaatatt ttcttaataa tatcgcacta agatttaaca cgactaaaag tcctaaaagc
      901 acaataatac ccgctgcggt tctttctaaa aatgcacgct ctggcatagc cgaccatgag
      961 taaatttgag caggtaaaac gctagttgga tcaaaaatcg aacttgctac atcagggata
     1021 aatgctatca taccaataat catcaaaggt gcagtctctc ctatagcccc tgctaaagtc
     1081 aaaatagaac ctgttaaaat cataggcata gccaaaggta acataatacc ttttaccatt
     1141 tgaacctttg tcatacctaa ggcataagca gcatttttca tattgatatc cacacttttt
     1201 aaggccgctt tggttgaaac aatgataata ggcaaactca tgatcgccaa agtaagccca
     1261 cccactaaag cacttgaacg aggcattcca aaaagattga taaacactcc aagtcctaaa
     1321 agtccaaaca agatactagg aatacttgca aggttgttaa tacacacttc tataaaatgt
     1381 gtaaggatat tttgtggtgc aaattcttct aagtaaattg ccgctgcaac gcctatagga
     1441 acactcacaa ccatacaaac aagcataaca agcaaagtcc ctacaactga agataaaatt
     1501 cctgaatttt caggagattt tgagtcccca tttaaaaaga aattgctatt aaatttaagc
     1561 tctatctcgc ctttttgcac aagatcatcg actaaagttc tttgtttttc actaaggcga
     1621 ttatattttt gcttcatata ttgatctact tctgaatttg ccaaaagcca agatttttca
     1681 gtgatttgtc ctgttcttat ttttctttgt tctgcgcgag ataaaagatc ataagcagga
     1741 gaatttctat tagcctctac aaaaatataa gtttgcttaa aagcaggaaa tccaagataa
     1801 gccacacttc ctaaaaagat acaaagaaaa attaaattaa tataaagccc cattttacaa
     1861 agtcttttaa aagactttga agctttttgt ctttttttaa aaagtttttt cataaatttt
     1921 tccttttgtg aaagcgattg ataagataaa cgctaaacat attgatgatt aaagtgatga
     1981 caaaaagcac caaacctaaa gaaaaagcac ttaaagccaa agaactatca aaagcttgat
     2041 ctccacttaa agcttctacg atttttaccg ttaccgttgt catatcttct aaaaaattta
     2101 aagttaaatt tggacgcaaa gaagctgcca tcaccactat catagtttcg cctaaggctc
     2161 ttgaaagtcc taaaagacaa gctgcaacta taccaggaat agcctcaggt aaaatcacgg
     2221 caaaaaccac ttcttttttt gtcataccta aagcataagc gccattaatc cttttctcgc
     2281 ttactgcttc aatgcaatct tgagataaag aagccactat aggtactatc atgatcccca
     2341 tgataaaacc tgcgcctaaa gcactttgaa agcttgcttg tatgccaaat aaagaaaaaa
     2401 accacactat aaaaggcgct acaactatag ccgcaaaaaa tccaaaaaca acagtaggaa
     2461 tccctgcaat gatttctaaa ataggtttta agtaattttt agattttttg ccagcaaaaa
     2521 cacctaaata tatagcacac ataaccccta aaggtaaagc cgttagcata gcaatcaatg
     2581 aaatataaaa agttccccaa aaaagcgata gcgccccaaa aacaccttgt ttactcgtgc
     2641 catctgcatt cataaaagct gcatcagctg cccactgact tgagaataaa aaggtaacaa
     2701 cgctttcttt ttgaaagaat tttaaagctt caattaaaat tgtaagcatg atagcaaaac
     2761 ttactatcac gcttacaaaa gcacataaaa aaagtgcaaa tttgattatt ttttctttta
     2821 acaaagtttt tccttaaaaa acttttccag cttttacaag ctcatcattt aaaatttttc
     2881 tatcttttac gtgtttttga gaagctttta atttatcatc actcaaagga acaagtccta
     2941 ttttttcaag ctctccacca ctttttgcca aatcatcact catataaatt tttgcaaaat
     3001 caaaggcttc ttttggattt ttcttagcat tgatataaat aaacaaactt cttgcaagtt
     3061 cgtatttttc atctgcgatg ctttcttcgc ttggcgtaac accatcgata ttagcagcat
     3121 tgattttgtc tgaattgctc actaaaaagc tataaccaaa aattccaaaa gcatccttat
     3181 caatagtaag tttggaaacg attagattat cattttcacc acttgggata taagcaccat
     3241 cttggcgtat ggttttatac tcgcctttat actcaggaat ttttttagac acatcactca
     3301 ttacaagctc ttctatagta tctcttgttc ctgaacttga tggtggacca taaacactaa
     3361 ttttacgatt tggtaaattt ttattgattt gattccagtt tgtataagga tttggtataa
     3421 gttttccatt ttgtggaatt tcttttgcta atgctaagaa aagttctttt tttgtgatat
     3481 ttaatggagc attggtttta ttttgagcta aaactatacc atcataacct atcatcatcc
     3541 ctactatatc agttacccct gcttttttgc aagtttcaaa ttcgcttaat ttcataggtc
     3601 ttgaagcatt agaaatatca gtagttcctt cacaaaatac cttaaatcca ccccctgttc
     3661 ccaagctctc tactatagga gtttttgtat ttttgatcga agcatattct tcagctacaa
     3721 aagaagtaaa aggatacaca gtcgatgaac ctgcgatttt taaatctgct gcatttaaag
     3781 caccacaaag tgcaagactt gccacactta aagatagaat ttttttcatt ttttctcctt
     3841 aactttaaaa aagtaatgga agtttaaaaa aacttggaaa cattttggaa acatttttta
     3901 ttttgtattt ttcttaaata taatttttaa ctatcaaaaa atttagcttg tttttaaaaa
     3961 aataatatat cattataaaa cattttaaat tttaataagg agataagaat gctttctaaa
     4021 gaagttgtaa aattactcaa tgaacaaata aacaaagaaa tgtatgcggc aaacttatat
     4081 cttagtatga gttcttggtg ctatgaaaac agtcttgatg gagctggagc cttcttgttt
     4141 gcacatgcaa gcgaagaaag cgatcatgct aaaaagctta tcacttatct taatgaaaca
     4201 gattctcatg tagagcttca agaagtaaaa cagcctgaac aaaatttcaa atctttactt
     4261 gatgtttttg aaaaaaccta tgaacatgag caatttatca caaagtcaat caatacttta
     4321 gttgaacaca tgctaacaca taaagactat tctactttta atttcttaca gtggtatgta
     4381 agcgaacaac acgaagaaga agcacttttc cgcggtatag ttgacaagat taagttaatc
     4441 ggagaacacg gaaatggact ttatttagct gatcaataca tcaaaaatat tgcattaagc
     4501 agaaaaaaat aatctttgcc ctactatggg caaatctcgc tttggattga aggtatgact
     4561 tatttttctc tagaatttag tattttaatg atagcttttt ttgctattta ttggactttt
     4621 aaaaatgatt acaaaataca aaatatttta attttaattt tctcttatat tatttatatt
     4681 ttaatcaatc cttatttcgc cttggtttta tttatatata ccttttttat acactatttt
     4741 gccttgctaa tttttgtgcg tcgcaagcgt tatattttcg ctacttgcat ggcttttatt
     4801 attttaaatt tatgtttttt taaatacttt cctagcatca aaggaagtgt tgatgagata
     4861 ttaaattttt tcggtttaga atttttaaat attgatttag tattaccaat aggaattagt
     4921 ttttatacct ttacttctat cacctatctt gtagaagttt atcaaaaacg ccgtttagaa
     4981 agttttttaa atttagcaac cttcttatca ttttttccaa cattactttc agggcctatt
     5041 atgcgaagtt cttttttctt tgagcaggcc tatcaaaaac gcgaatttaa acatgcaaat
     5101 ttaatcatca tcttgcttgt ttttggtata gttaaaaaag ttttaatagc caattacctt
     5161 ggaatttatg ctaaaagtat tttagacttt ccacaatctt ataatttcat acaactttta
     5221 agtgcaattt acgcctatgc aattcaaata tactgtgatt ttagcggata tgttgattta
     5281 gtttgtgctt ttgctttaat gttaggtttt acccttccgc ctaactttaa catgccttat
     5341 cttgcaaaaa acctaaaaga tttttgggct agatggcata tcagtctttc aacttttata
     5401 agagattata tctatatacc tttagggggc aatagaaaag gaataccacg cactgtagct
     5461 aatatactca tcgcttttat actttcaggt atgtggcatg gcaatacact tgcttttatt
     5521 gtttggggtt tgttgcatgg tattggcata gtttttatac atttgctaac tttaagcaaa
     5581 tttagtttac aaaaaattcc agctttagga agatttttaa cctttcaatt tgtatgtttt
     5641 acttggattt tcttttatta tagcaaaaat ctagaagatg caatagaata ttttaaagct
     5701 tgttattata atttcttcca aattccatct tataacgata tctatatgtt ggttgctttt
     5761 ggggttcttt ttatgatcta tcctttattt attaatttta aagaatattg cattaagatt
     5821 ttaaatctta ctccattttt gctaaaacct tttattatag cttttatttt acttttggtt
     5881 tttgctttta tgccagatgg aattcctgat tttatttatt cgagttttta gatgagtgta
     5941 gttagatttt tctttatttt gattatagtg cttggcttgg ttgttgtagt tatgaatcag
     6001 agtattagct cttatataga acaaaaatat cactttgcat tctatcctca taatgatctt
     6061 ttaaaagaag ccaatggctt caaaattaaa ttagaacaaa ttcgtgcaat tttaagcaac
     6121 gaacccttgc ctcaaactaa tgaagaaact acaaatcaag aaaataaatc aatagatgaa
     6181 aacttaagta aaatagataa agttctaaac actttagaaa atgatgaaaa cacttctcat
     6241 aaagaaacaa atccaacctt aatccaagat gcaaatatta gttttatcga caataccaaa
     6301 ttagaactac aaaatggaga tgagttttta tttatcggag attctttaat gcaaggtgtt
     6361 gcaatagcct taaatagaga tttaagaaat ttaaatctta aggtaaccga tcttagcaaa
     6421 caaaatacag gcctttctta taaatcctat tttgattggt caaaagcaac caatgaagct
     6481 tttgttaaaa actcaaatat taaatatctt gttgttcttc ttggtgctaa tgatccttgg
     6541 gatattaaaa aaggaggaag ttatcatcgt tttggctccc cttcttggat agatatttac
     6601 acaagtcgtg tagatgaaat cattaagatc gctaaaaaac ataaagccaa agttttttgg
     6661 tttgaaatcc ctcctgtaaa aagagaggaa ctaaacaaaa aaatacaaat acttaacaaa
     6721 atttacagcg atgaaattct taaaaataaa gaaattttta tcaacactaa gctatttttt
     6781 agcgtcaatg atcaatactc agcttatata aaagatgaaa acaatagaag tataaaagta
     6841 agaacagatg atggggttca ttttactcca agtggcgcaa gagaaatgtc taaactttta
     6901 ttagaacaca taaaacttaa ggaagaaaat gctagtaaat aaatttaaaa ttatcttatt
     6961 gttttttatt atttttacta gctcttatgc acaaaattta aatacaaatg acacaataga
     7021 ttccatactc aatcaaaaca aaaatcactc tgctttaaca agttatgtat taaaaaaaga
     7081 tcttaaaaat ctagaaaaaa aattagaaaa aaatcaaaac ataggaatta gaatttatgg
     7141 agattctcat atggcggctg atttctttcc gcgtgtcata agaggatatt taatccgttc
     7201 taactctata ggttttgcct atcctttaca gcctaaatat caacaaaatc ttaatcttgt
     7261 ttattcttat aaaaactttg aaattttaaa ctcaagaaat cctgctaatg ctggacataa
     7321 ttttccacta ggtgggataa tagccaaagc aaaaactaaa ggcgcaaaaa tcaaccttga
     7381 tacaacccta gataaaaaaa aattcaaaat aggattttta tttaaggcca agcaaaatac
     7441 caatgctttt agcatcaaag atgcaaaaaa tcgaagctat gagttaagaa ctacacaaat
     7501 taacaaatgg tcttataaag aactagaact tgatcttcct ttgcaaattt cagccttaca
     7561 aaaggatgct gaactaggag gatatttcat cacaaataaa aataataatg ttttcttaga
     7621 taccattgca atcaatggtg ccaaaagtga tttatggctc tcttggaatc aagaagttgt
     7681 aaaaaaagaa ctagaacttt tacacaatga tttaattatt cttgcctatg gttctaatga
     7741 tgcactcttt aaagggtttg aaaaacaaaa atttaaaaac aatttaaaaa aatggattag
     7801 tattttaaaa acttacaata aaaacgctgt tatcatgcta atctctccac caactgtagt
     7861 tcaaaaacaa ggtaaaaact acaagcttgc tcctgatttt tttaccatac gcaaagcatt
     7921 atatgaagtt gctaaagaag aaaaaactct tatttttgat atgcatcagt ttatgcaaga
     7981 tagtggagga aaaaacaaat ggatagaaca aaagctttcg ctcaatgatg tacatcttac
     8041 tataaaaggc tatgagctga tggctaaaaa gttactcgag gatttaaaaa atatcatcga
     8101 ttattaaatt taatacttag gaaattctaa gttttcatca ttaaaactta aagctgtgat
     8161 ttgatagtaa gaattaatgg tttttaaaag attaaatcta gctcttagaa attcttgctg
     8221 ggtagaattt aaagtattgt ttgcatccaa ataatctttt aattcacttt ttcctaaaat
     8281 atatttttca taatacgcct tagtgataag ctcttgttta atgttaatat tttgcaaatt
     8341 ttgtaaaagc aaggtgtcgc tttgataatc tttataattc aatgcaaatt cattcatcgc
     8401 actttgcaag gcttgctcat aagaaattaa aagttgctca taggtaaatt gtgaaatttt
     8461 gatattttgc tttactctac cataatctaa gaaaggtaaa gaaatcttaa cattgccact
     8521 taaaatttca aatttaaaac tatcatcgat ttttttatca cttccgctta atgctccacc
     8581 taaagaaata ctaggcaaaa tagatttttg catggaagaa taatccttaa aggctgattt
     8641 taagctattg agtttagatc tcacatctgc acggtacgct aaagctttta aaggtatatt
     8701 aaaatcagga cttaaggttt taaaatcatt taaagataaa gttttaaaat actctatata
     8761 agcaaaacct tcttgctttg ccaataaatc ttgtaaattt tttatgagta aattacgatt
     8821 ttgatcattg cctaataaat tttgtttagc tcttaataag ctttgttcta tgtttaaaag
     8881 atctaattct tctatttttc caagcttgta tttataatta taaagctctt ccatttgttc
     8941 taaatttgaa agataagctc gaagcaattt atctacatcg ttaaaataag ccagctcaaa
     9001 cacatcattt aaagctgtat tgatcatact tatttttaaa ttttcaagat cataagcact
     9061 tgcttttgca ctaaattcac tcgcacttgc actatctctt aatttgccat aaatatcaag
     9121 ctcatagctt aaatttaaag aattattgaa atttttactt tgtttgcctg aatttaaatc
     9181 tttatccgca ccaaaaccca aatttccact taaagtcgga tataaatcat aatcaatcaa
     9241 atcagctcta gccaaagccg aaagcaaagt ttttctagca atattaatat cactattatt
     9301 caataaaaca aaatttagaa attcatttaa ttttgcatta tcataagatc tataccaatc
     9361 ataagtaaga tttaaatctt tcatttgttc ttgagttaaa tcaacttctt taggcaagct
     9421 aagttttaca ccacaagcgc tcaagaaaaa tgctaaaaaa atgctaagta ttattttcat
     9481 tttattcctt tgataatgca ctaataggat ttaaatttgc tgcatttctt gcagggaaaa
     9541 aaccaaaaac cacaccgata aacatagaac ttaaaagtcc caaaagcaca gaataggcat
     9601 ttaaaatcat aggaaaatcc gtacttaaag tattaaaagc aaaaataaca aaaatcgata
     9661 aaatcacacc taaaatcgcc cctatagtac aaatcataac cgcttcgatt aaaaactgca
     9721 tcataatatc ttctcttcta gcccctatag ccatgcgtat gcctatttct cttgttcttt
     9781 cacttacaga aacaagcatg atattcatca ctcctatacc cccaacaatc aaagcaatca
     9841 cagccacaca agcggtaagt atggttgtag tgcgtttatt tgctgtaata gcttgcttaa
     9901 aagtgtcaga attaaaagta aaaaaatcct tttgtccgcg tttaatttct aaaattctta
     9961 taatagcatt ttcagccaaa gttgaactca catcatcttt aaccttaact atgatttcac
    10021 gcaaatttct atctcctgta agcttattca tcagtgttgt atagggtata taaagacgta
    10081 ctacattatc ttctataggc ttgtctgtat ctttttgcaa aactcctata atcttaaaag
    10141 gttgagaatt aaaaagcacc acacgaccta aaatattttc acttttttca tcaggaaaaa
    10201 gatttttttt agcattaaaa tccaatacag caacattggt actatttttt acatcatcat
    10261 tatttaaaat tcttcccgca tctatcctta aaccttctat agcaaaatta tttaccccta
    10321 ctccttcagc tcttgcgctt aaagaaatat tggtataagt tgccactcct gaagtatttg
    10381 aatgagcatc aactgcttct aaatattcta aagatcttag cgtttctaaa tcactaaaat
    10441 taagccttgt tttacccgaa cgcaaatccc caaatccttt tccagggcga atttcaatag
    10501 tatttgtccc aagtcttgca atagactcaa gcactttagc ttgagagcct aatcctaaag
    10561 ctacaacaca aactacagaa gcaataccta tgatgattcc aagcatagtt aaaatagaac
    10621 gaagtttgtg tgcaagtatg gaagaataag ctatcttaaa acattcaaag gcttgatttt
    10681 taagcaaagt aaatgttttt ttctctttag acattgtttt taaagtgagt ttttcttgag
    10741 ctttttcctt tttagtatcg cttaaaattt ctccatcttt aatctctata acccttttag
    10801 cctgtgctgc gatttttgga tcgtgagtta ctaagactat agtatgacct tgtgtgttaa
    10861 gtttttgtaa aatttcaagc accataatac cacttttact atccaaagct cccgttggtt
    10921 catcagctaa aataagctct ccgccattga ttaaagctct cgctatagaa acgcgttgtt
    10981 gctgccctcc gcttaattcg tttggcttag aatctaactt gtgagctaat tctaaatcat
    11041 ttaagagttt tttagcattt tgacttcttt cttgtaaatt ttttcccgca taaactgcag
    11101 gtaaagaaac attttcttta gcactcagca agcttaaaag attgtatctt tgaaatataa
    11161 agcctatttt ttcacgcctt aatcttgctt tttcatcatt attaagttta gtgacttcat
    11221 actcatcaaa aacataagtt ccactacttg gcgtatctaa tgttcctatg atattcaaaa
    11281 gtgaagtttt accacttcca ctttgtccta taatagcaac aaattcacct ttttctatac
    11341 ttaaacttac attttttaaa atggcatttt cgcctatatt tttgcaaata tttttaagaa
    11401 aaatcattaa aatctcaact tcattttagg agctaagcca tcagcacttg agcttactat
    11461 caattcttca tcttcattta caccttctaa aatttgagta ttgatagaat ctttaatgcc
    11521 aagtttgaca tattttttaa cagctttttg attttccaaa atttcaacat aatagccttt
    11581 tggatcgctt ttaattgcat aagttggcac tgctaaaaca gcctttgcac ttgctacgac
    11641 aatttcattt tgtatactca taccaatacg caaaaaatca tctttattgg ctacataaaa
    11701 ttttgcgtaa taataaatag catttgatga gcttgagctt gaagaactcg aacttgatga
    11761 gcttgagctt gtactagaat cactcacttc agtatcagct ggatctatac ttgcaatctt
    11821 agcatgataa gttttttgag gatcattaag caaagaaaaa tcaagctctg ttcctacttt
    11881 tatcttactc acatcagcct ctgctatttc cattcttact tccatttcgt ctaaattagc
    11941 tatacggact atagtaggag tgttttgatt agcattaact gtttgtcctt catctacagc
    12001 tacattaatc acaacaccat ccataggagc agtaatggtt gtataaccta aatctttttg
    12061 tgcattttta agagtgattt caagctgaac tacttgagca ttaagctctg caacattggc
    12121 ttttaaagta taataattat ttttttgagt ttctaaattt tcaagagaac ttgctttagc
    12181 tgcataaagt ttttgctctc tttgatattg cttattcgca atctcaaggg caactttttt
    12241 actctctaaa ttagccttag cactttcaag ctgagctttt gtaatatcta aatcgttttg
    12301 ttgtttatct ttatcaattt gagcgatcaa atcaccttgc tttacatgag ttcccacatc
    12361 aacataaagt tttataattt gtccactaac ttgagcaccc acatcgactt gatctttggc
    12421 atataccttt cctactgcct ctatggtttg agatatatct tttttttgta ttttttgagt
    12481 taaatagctg attttttcat cattattaaa aaaaataaaa taagccccaa cacttccaag
    12541 tattgcaatt aaaatgatta aaacaatctt ctttttcata ataacaaatc ctaaagaaaa
    12601 atcaagatta aattttactc attttttgtg aattttttgt gaatttttaa ttctatttta
    12661 taaatttaaa aattctaaag ccatcatcac atcaccctgc attaaaactt ttaaattttc
    12721 atcatcccaa caaaaagtag aactatgatg caaagctgga tgatttaaat cctttgaaat
    12781 tccaacaaat acataagccc ccattctttc tcgtgttaaa aaagcaaaat cttcagcccc
    12841 catgtcaggt ttagaagaaa caatgatatt ttcttctcct aagacctttg caaaagcttt
    12901 tcttgctatt aaaacagctt tttcatcatt aatcaatgga ggaaattctt tagtatattt
    12961 aagcttataa tctccgccat tggattttgc tgtagcagca gccacttctt ctaaagaact
    13021 ttttaaaata tcttgcgttt tatcatttaa aaagcgcaca gttcctttta aataagcatt
    13081 tgtaggaata acattataag tagttcctgc acaaatttga cctacggtaa tcacccctgc
    13141 ttcataaggg gctaaacgtc tagaaataac actttgtata ttatttacaa attgcgttgt
    13201 cataattata ggatctatac aagtgtgcgg atgagctcca tgccctcctc tgccaataaa
    13261 ttccaaatca aaaatatccg ttccagccat catttcacca cttacaattt gagcagtatt
    13321 ttcaagcaaa ggcccccata aatgacaacc aaaaactgca tcaacataag gattttccaa
    13381 tacacctgat tctatcatag gtttagctcc accgcttccc tcttctgcgg gctgaaacat
    13441 aaatttaatc gtgccacaaa attcatcttt aagctcattt aatatcaaag cagctcccaa
    13501 aagccctgct gtatgtccat catgtccaca tgcatgcatc ttaccatcaa tttttgaagc
    13561 atagcttaga ttagtttttt cttgcacagg caaagcatcc atatccgctc ttaaaagaac
    13621 acattttggt tttttctgac tcttcttttt tccttctata atagctaaaa ttcctgtttt
    13681 tgcaatattt ttttgatatt taatgccaaa ctcatctaaa attttacaca ctaaatgggc
    13741 tgtattttct tcttcaaatt caagctcagg atgcatatga atttgatgtc ttaaatcaac
    13801 tactttatca tagtacttta gtgctaaatt ttcaaccagc ttttgcattc ttttccttaa
    13861 tctaaatctt ttattttctc atctgctttt ttactgtcaa gtttttccaa attcgcctcc
    13921 atttttcgta tttcttcttc tccactacgc actaattttg catcaatttt ggaaaaatct
    13981 ccagtttttt tatttggata ttctacctta gaaagtataa aacgcaataa atttaatctt
    14041 gcttttttct tatcatcaga agaaataata gtccaaggac aagttggagt attagatgct
    14101 aaaagcatag agtatttagc taaagtatat ttatcccata attcttgcga tttttgatcc
    14161 acaggagata atttatattg tttaagtgga tcgcttcggc gtttttcaaa acgttttttt
    14221 gctcgtcttt tgatactgaa aaataaaatt taaaaaaaat aatatcacta tttgaaatca
    14281 tattttcaaa caaaggcact tctcttaaaa aatctttatg ttgttgcggt gtacaaaaac
    14341 ccataaccgg ttctactcct gcacgattat accaagatct gtcaaaaatc acaatctcac
    14401 cggctgaggg caaatgtgct atataacgct gaaaatacca ctgtgttttt tccacatcac
    14461 taggtttttc aagagccaca acgcggcaac cacgcggatt taaatgctca atcaaacatt
    14521 taatcgcccc accttttcca gccgcatcac gcccttctat aagtataaga acctttaaac
    14581 ccttggcttt aacatgattt tgaaatttca aaagctcaat ttgcaaattc tttaaatctt
    14641 tttcatactt ctattatact tttctttctt ttaacagaaa cataaatttc attcttttta
    14701 acaaccgctt gcgtttttgg agaattattt tcttgcattt tcaaaccttt ataaagtatt
    14761 taaagtgaa
//
LOCUS       DARGEX010000036        14645 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.036, whole genome shotgun sequence.
ACCESSION   DARGEX010000036 DARGEX010000000
VERSION     DARGEX010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.036"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            58..1548
                     /locus_tag="SF010_000859"
     CDS             58..1548
                     /locus_tag="SF010_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8229804.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTLENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKAMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            1545..2933
                     /gene="ftsA"
                     /locus_tag="SF010_000860"
     CDS             1545..2933
                     /gene="ftsA"
                     /locus_tag="SF010_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG8229805.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2949..4061
                     /gene="ftsZ"
                     /locus_tag="SF010_000861"
     CDS             2949..4061
                     /gene="ftsZ"
                     /locus_tag="SF010_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG8229806.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            4217..5029
                     /locus_tag="SF010_000862"
     CDS             4217..5029
                     /locus_tag="SF010_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG8229807.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDSSRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNAILFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            5058..5849
                     /gene="flgG"
                     /locus_tag="SF010_000863"
     CDS             5058..5849
                     /gene="flgG"
                     /locus_tag="SF010_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG8229808.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5915..7345)
                     /gene="glnA"
                     /locus_tag="SF010_000864"
     CDS             complement(5915..7345)
                     /gene="glnA"
                     /locus_tag="SF010_000864"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG8229809.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            7548..8243
                     /locus_tag="SF010_000865"
     CDS             7548..8243
                     /locus_tag="SF010_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG8229810.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLSEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            8240..9493
                     /locus_tag="SF010_000866"
     CDS             8240..9493
                     /locus_tag="SF010_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG8229811.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHKCGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            9494..9988
                     /gene="purE"
                     /locus_tag="SF010_000867"
     CDS             9494..9988
                     /gene="purE"
                     /locus_tag="SF010_000867"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG8229812.1"
                     /translation="MNFVSILMGSKSDYETMKEAVKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            9998..10534
                     /locus_tag="SF010_000868"
     CDS             9998..10534
                     /locus_tag="SF010_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG8229813.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            10546..11409
                     /gene="glyQ"
                     /locus_tag="SF010_000869"
     CDS             10546..11409
                     /gene="glyQ"
                     /locus_tag="SF010_000869"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG8229814.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            11396..12121
                     /locus_tag="SF010_000870"
     CDS             11396..12121
                     /locus_tag="SF010_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG8229815.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNIYFTEEILGFKISFKDEFLIYVENSISFEALCDWVKKKLNLQILRVSNCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            12131..12847
                     /locus_tag="SF010_000871"
     CDS             12131..12847
                     /locus_tag="SF010_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG8229816.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            12844..14001
                     /gene="waaA"
                     /locus_tag="SF010_000872"
     CDS             12844..14001
                     /gene="waaA"
                     /locus_tag="SF010_000872"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEG8229817.1"
                     /translation="MIFFYYFLTWAAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFAKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFIHNQKALF
                     EEVENVYFCENLKDLNDKIHYLNLKVKISKKENLDLIIQTIQKGIDARKSL"
     gene            13982..>14645
                     /locus_tag="SF010_000873"
     CDS             13982..>14645
                     /locus_tag="SF010_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8229818.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLTKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSY"
BASE COUNT         5365 a         1827 c         2712 g         4741 t
ORIGIN      
        1 ctccacttaa acacttctac gatacaatat ctggtttaaa tttaatcaag gaatgatatg
       61 cttacttgga tgcaacatca caaaaaatat cttgttgtta ctatatgggt tagtactata
      121 gcttttgttg gcgctggctt tttaggttgg ggtgcttatg attttaatct caatagaagt
      181 tcgagtgttg caactgtagg aaatgaaaag ataggtttta gcgaatttga tactagatat
      241 agacaaattt taagttatta taatcaaatt agcaatggtg ctttaactct agaaaatgct
      301 gagcaactag gcattaaaaa tatagcttta agctctcttg ttgaagataa gcttttgtta
      361 aattttgcca aagatttggg tattggtgta aacgagaatg aaattttaca aaaacttgca
      421 aatactagag aatttcaaga tcctacaggg gattttaaca aaacaattta ttatgaactt
      481 ttaaatgcca ataatttagc tccaaaagat tatgaaacac aacttgcaaa tgaagtaatt
      541 accgataaac ttaatcaaat ttttaatatt cctagcaaag atgaggaatt aaaaatgtta
      601 gcttctagtt atttcatgca agatgcttta agtattgcaa aaattgatta tgacaaaaaa
      661 aatattaaga ttaacgaaga ggatttaaaa aagctttgga atgaacataa agaagattat
      721 aaaactaaaa aaatatatga aatttcaact tattttttgc cagttagcaa tgagaaaatt
      781 gacgacaaag aattagaaaa attttataat caagatgaaa ataaactaaa atataaagat
      841 tttgcaggta aagtgatgga ttttcagtct gctaaaaatg aagttgctaa agattacgcc
      901 ttaatgcaac taaagaatgt ggctaatgct aaatttttag atttaaaaaa tgggaaagat
      961 aattttcaaa aagatcaaaa tattagtgaa tctgatgttt attatccaat tgatcttttg
     1021 aataaagcta aaaatggaga tgttttacgg ccagcacctt ataataacgg atatatcata
     1081 gttaaactaa ataaagtaga tcctataaga aataaaactt ttgaagaagc tagagaagaa
     1141 gttttaccta tgtatttaag cgaacaagct agaaaaaatt tagaagaaaa agctaaaaat
     1201 agtttagtaa attttaaagg cgatgatata ggctttgtaa gtcgagatag ttctcgcgag
     1261 agtgtaaagg ttagcgataa aatattaaac gattctgaat ttgcttattt tttaatgaat
     1321 gtatttaata ctgatcaaaa tagttcttat gtggtcatta atgacaataa agcaatatta
     1381 tataaaataa ataaacaaaa attagatatg aactccgata aatttgaaca atacaaagct
     1441 atgcttgaac aaaatttgca aaatttaaaa gcaaatgagc ttaagcaaga acttgttgat
     1501 gaacttaaaa agatatatcc gataaaaatt tattataaag ggaattgatt ttgaatatat
     1561 taggaattga cttaggctca acccagactt gtgccattat tgctcaaaaa gatgaagatg
     1621 gattaaaaat tattggtttt tccaagtcga aaaccaacgg ggttaaaaaa ggtgccatta
     1681 ccaatataga gcttgcttct aaatctattg aagaggctgt tagaagtgct gagatgatga
     1741 gcggagttca ttatgatagg gttgtggtgt ctatatcagg tgcttatact aaaagcgttg
     1801 atagcatagg tgttgttaat attccaaatc atgaaatagg cattaaagaa attcatcgtg
     1861 ctgtaagtac agctaagcat actgccaatc taccaagtgg ttatgaaatt atccatgttt
     1921 tgccttataa ttttaaggtt aatgatcttg aacatgttga tgatcctttg ggaatgagtg
     1981 gtaatcgttt agaagtttca acccatatag tgatttcaca agaatctcat attaaaaatc
     2041 ttaagaaagc agttgaatta gctgatttaa gagtggataa tatagttctt tcaggatatg
     2101 cttcagctat agcttgttta gatgatagcg aaaaggaatt aggtgctgtt ttgattgata
     2161 tgggtggagc gatttgtgat atggttgttc atactggaaa ttcaattaga tataatgatt
     2221 gtttgcaaat tggctcgatt aatatcaccc aagatttatc aatggcattg catacacctt
     2281 taaaagaagc agaaaaaatc aagcttaatt atgcagctct ttcacaacag cctaataccc
     2341 ttatacaaat tccttcaatg ggtgatgaaa gaaaagttaa tgaagtttct ttggatatta
     2401 tttcaaacgt aatttatgca agagcggaag aaactttgat gattttggca aaaatcttaa
     2461 gtgataatcg ttatgccaat gctataggtg gcggagttgt tttaacaggt ggaatgacta
     2521 agttagcagg tattgatgag ctagctcctg caacatttga taatcgctca gttagactgg
     2581 ctactgcaag aaaagatttg attactggtt ttagtgaaat ttttaatgat cctgaaaata
     2641 cttgtgctat aggactttgt ttatatggag cgggatattt tacgccttat gaacttgatt
     2701 ctaatgaaaa attaagatat aaaggggaaa ttgaaaattt taatcgtcaa attaaacaag
     2761 atattgtttt gcaaaaagat acagaaagtg aaataaaatc tgattttttt gatgaaaatt
     2821 tgcaagaaaa tgatacaatt gcaatacaag aacaattaga ttttaaagag ccaaaagaaa
     2881 aaaaacctag tgttttttca aatatctggc ataaaattat gaatcaattt taacaaggag
     2941 aaatttttat gagtgaattt ttagtagaag aaatgcaaca taataaaggt gcaaaaatta
     3001 aggttatagg ctgcggtggc ggtggcggta atatgattaa ccatatggtt aaaatgggat
     3061 taaatgatct tgatttaatt gcagcgaata ctgatgcaca agctatttca atttcattag
     3121 caaaaactaa aattcaactt ggcgagaaaa aaactaaagg tttgggcgct ggtatgcttc
     3181 ctgaagtagg tgcagaaagt gctagagaaa gttttgaaga aataaaagca agtcttagtc
     3241 aaagtgatat tgtatttatt gcttcaggtt ttggtggagg tactggaacg ggtgccactc
     3301 cagttattgc acaagcagct aaagagattg gagctttaac tgtttctgtt gtaactatgc
     3361 cttttgcatt cgaaggaaaa caaagaaaaa aacttgctga aagcggtctc cttgagctta
     3421 aaaaagaaag tgattctatt cttgtaattc aaaatgaaaa attattgagc attattgata
     3481 aaaaagcagg cattaaagat gcttttaggt tggttgatga tattttagct cgtgctgtaa
     3541 aaggtatggt gtctatctta cttgataatg gagatattaa tgttgacttt gcggatgtaa
     3601 gaaccatcat gagtcatcgc ggactcgcgc ttatgggtgt tggtagtgct agcggtgaaa
     3661 atgctataga agaggctctt tcaaacgcta tagaatctcc tttgcttgat ggaatggata
     3721 ttaaaggtgc caagggagtt attttacatt ttaaaacaag ttctaattgc tctttgtttg
     3781 aaatttcggc agcagcaaat agtatacaag aaattgttga tgaaaatgct aagattattt
     3841 ttggttctac cacagatgat agcatggaag atagagttga agtaactatt attgcgacag
     3901 ggtttgaaga taaagataca gtagctaaaa aatctaccga agaagctcaa gcttctaaga
     3961 aaaatcctta tttaagtctt aaaaaggtaa gcggtggtta cgatgaagag ataatggcgc
     4021 aaattgaaac accaactttc ttgcgtcgtc aaatggatta aaattgattt ttaaagcaag
     4081 attgagtcaa atcttgcttt ttatagttta aaattctctc ctaataatct ttcaaatatt
     4141 tatttttctt tgtttttaaa agttggaaca ctctttgctt ttatagttat aaaatcttaa
     4201 atttataggt gaaaatatgc aaaatggata ttatcaagca actggcggaa tggtaactca
     4261 gtttaataaa cttgatgtga ttactaataa tcttgccaat atcaatacaa gtggatataa
     4321 aagagatgat gtggttattg cagattttaa aaggattttt aaagaaactc aggatgagtt
     4381 gcctatagaa aatcacacaa gagattcatc tcgttttgta aatactacaa tagatggcat
     4441 cccgcaagtt tctcaagaat atacggattt tagcctaggt tctttaaagg ccacaaacaa
     4501 tcctttggat ttggcaatga ctagagaaga tgctttttat ttggttcaga ccaaagatgg
     4561 agaagtaaga ttaactaaag atggaaattt tcaacttgat gatgagggtt atttggtaaa
     4621 taagcaagga tacaaggtat taagtagtga ttattttaat aatcctcaga atgctggcat
     4681 acgcattcct aatggtgctg ttcaaattag cgttgataaa aacggaagca ttgaagttga
     4741 tggagctcaa aatgcaatat tatttgtagc acaagtagat gatataagag ctttgcaaaa
     4801 agatggggat aatgtctata aaatagatga tctaacccgt attagagatt tgaaaaactc
     4861 caatgctatt cgccaaggtt tttctcaggg atcaaatgtt aatccagtta ctgaaatggt
     4921 aggactgatt gaagcaaaca gaatggtaga aatgtatcaa aaagttatga cagctcatat
     4981 ggatgactta aatcaagaag ctatcaataa gcttgcagct gttaaataat ttaaaataaa
     5041 ataaaaaagg attcaagatg atgagatcac ttcatactgc tgctacagga atggtagcgc
     5101 agcaaacaca aattgatgtt acttcaaata acatcgccaa tgttaataca gcaggtttta
     5161 agaaaagtcg tgcagaattt gctgatctta tgtatcaagt tatgaagtat gcaggaactt
     5221 caacttcagc tactactctt tctccttcgg gtatagaagt gggtgtgggt gttcgtccaa
     5281 cagcggtaac taaagttttt actgaaggaa atttaaaatc aacaagtact gatggtcttg
     5341 atatggctat tgcaggtaat gggttttttc aaatacaact tcctgatggc actataggat
     5401 atactagaaa tgggcaattt acaaaagata atgaaggtaa tattgtaaat tcagatggct
     5461 atagactttt acctgaaatg acaatacctg aaggcgcaac agcaattaat gttgctacag
     5521 atggaaccgt ttctgtaatg ctaccagggg agcaacaaga aactcaaatt ggccaagtgg
     5581 agctagttca gtttataaat ccagcgggtc ttcattctat gggtgataat ctttatctcg
     5641 aaacaggagc aagtggtgca cctgttgcgg gtatagcagg acaagatggg cttggaacaa
     5701 taagacatgg atttatagaa cttagtaatg ttcagcttgt tgaagaaatg acagatctta
     5761 tcacaggaca aagagcttat gaagcgggtt ctaaggccat tacaacaagt gatgatatgc
     5821 taggaattgt aaatcagctt aagcgatagt tgatataaaa taaataattt ttaattcttt
     5881 tttgtttaat ggcgtgttaa acgccattaa atttttagca agagtagcaa gttttaaatt
     5941 cataagcagt tggacgagct tctactggcc aaacttgtgt ttcaaatttt aaatgctgat
     6001 agtcatcgat aaaaatatcg ctcattacag gttttaaata agaattatgt cggattaaag
     6061 cttctaaact tcctcttaga gtatgtggta attgctctat ccctttttca cgtatttcat
     6121 ccaaagtaag atcaaataaa ttttcatcca taggacccac aggaatggtt ttatttttga
     6181 ttccatcaag acctgccatt aaaagactaa caaaagctaa ataaggatta gcagtgctat
     6241 cagggaagcg aatttctata cgagctgaat ttttgcctat gccataagga acgcgacaac
     6301 ttgctgatct gttttgacaa gaataagtta aaatacaagg agcttcaaag ccaggaacta
     6361 ttcttttgta agagttggaa cttggatttg taaaagctgc aacacttcta gcatttttta
     6421 aaattccacc tatataattt atagcagttt gactaagtcc actgtatcca tctttatcgt
     6481 aaaataaatt tactccattt ttccataagc tcatatgaac atgcatacca ttgccattat
     6541 ctccgtataa aggttttggc ataaaagtgg cagttttgcc atttaaatga gctaccattt
     6601 ttacaacata tttataaatt tgaacattgt cagctgcttc tacaagcgtg ccaaaattta
     6661 ctcctatttc agcttgtcct tgtgcaactt catgatgatg aacaaaagtt ttaagaccta
     6721 ctttttcaag ggtttgaacc atttcagaac gaatatctac taaagaatca attggctgaa
     6781 ctggaaaata tccacctttg tttcttggcc tgtgtccagt attgtagcta tcggtaaatt
     6841 ctctatcatc attccactct ccttcttcgg tatcaacttc atacttagaa caatgagtag
     6901 tatcaactat ttttacacta tcaaaaacaa agaattcatt ttctggtcca aagtaagcag
     6961 tatcagctat gccactattt ttaaggtgtt ccattgcttt ttttgctatg cttcttggac
     7021 atttttcata catttgtcct ttgtaaatat catacacatc acaaaatact atgatagtag
     7081 gatcagccgt aaaaggatct aaaaaagcac tttgagcatc aggttttaaa atcatatctg
     7141 atttttctat aggttgccat ccatgaattg agcttccatc aaatggaatg ccagtttgaa
     7201 atgtttcttc attgattgca tgaagattat aggtaatatg atgccaagtt cctatcatat
     7261 ctgtaaaacg aaaatcaaca aaaagcactt cattttgttt gcaaaatttg aaaaaatcat
     7321 ctatattatt aacaaatttt cccatatttt tactccttta tgtaattaaa tttataaaat
     7381 tatatcataa aatttttaat taagatttaa ttaatatatt ttttttaata aatttaaaaa
     7441 tttaatttaa aaagattaaa aaataaaaat ttatattttt gttttagata aaattgatta
     7501 taattttgag caattattga aaatctagat ttaaaaaagg gaaaaaaatg actcaagaag
     7561 agcttgatgc tttgatgaat ggtgatgttg atcttgattc agagacagaa gcagaggtaa
     7621 aaaccgaaga atcgaatacc gaagaagatg ctttgatgtt agaagatgtc aaaatagctg
     7681 attacaaacc taatcctagc gtggtatggc caccaccccc accaaatcag gagcataaag
     7741 ttgtacatca gttagatgat gttacaaaag atagcgagct taaagcaacg gaaatgatgg
     7801 ataagcttga aagtattaat aatttttttg cggattctga aagtttactc aaagagataa
     7861 ataaagcaat agaaaaaaat attgatattt tttctaaact tagtgaaaaa tttcctaatg
     7921 tggaaagttt cagtgaagct ttagaattaa acaatcaagc taaaaaaagt tctaaggaga
     7981 ttgtcggaaa tcttcaaagc ggacaagatg aagtgatgat ggcaatggat gcaatgcagt
     8041 atcaagatat acatcgtcaa aaaatcgaac gtgttattaa tgtaatgcgt gctttaagcc
     8101 gttatatgag ttccttattt gaaggtaaaa ttgatgataa aaaacgtgta agttctgcag
     8161 tgcatattga aggtgatagt actgctgatg ttgtaagtaa tgatgatata gaagctttaa
     8221 ttgcaagttt agggcaaaaa tgatcattcc tgaaatagta gctcctgcag gaaatttcac
     8281 aaaattaaaa attgctttag cttatggcgc agatgcggtt tatgcgggtg tgaataattt
     8341 ttctttaaga tcacgcactg caagagaatt taattatgaa agttttgaag aagctattaa
     8401 atatacccat aagtgtggta agaaaattta tgttacttta aatggttttc atttaagctc
     8461 ccaaattgaa ggtttaaaaa gacatatttt aaaattgcgt gagatgaaac ctgatgcttt
     8521 tattgtagct tctgttggag ctatgcgtct tgttaaagaa cttgcacctg aaatttcttt
     8581 acatgtttct actcaggcaa atattttaaa ttatttagat gctcaagttt ataaggatat
     8641 gggtgctaaa agggttgtaa ttgccagaga attagggctt aaagacgcta aagctttaaa
     8701 ggaaaattgt gatattgaac ttgaagcttt tgtgcatggt tctatgtgtt ttgcttattc
     8761 agggcgttgt ttaataagct ctgtgcaaag tggaagaatg agcaatcgtg gatcttgtgc
     8821 aaatgactgt agatttaatt atgagcttta tgctaaaaat ccagaaaatg gcactttatt
     8881 tcgcttagaa gaagatgaaa atggtactca tgtgtttaat tctaaggatt taaatctttg
     8941 ttcttatata gaaaaaatca tgcaagaaaa ttgtatcagt gcttttaaaa tagaagggcg
     9001 tactaaaagc gaatattatg ttgcgcttac aacaaggact tataaaatgg ccatacaaga
     9061 tgctttagag agtaaatttg agtcaagtaa gtatgaaaaa gagattacta cacttaaaaa
     9121 tcgtggtttt acagatggtt atcttgtttc gcgtccttta gaaaaaaccg acacgcaaaa
     9181 tcataataca agcatagaag aaggttctca tcaagtgcat gctataagcg aagatggaag
     9241 cttttttaaa tgtaaaggga aaatcgtttt aaacacgcct tatgaaattt tagccccttt
     9301 aggcgatgtg attcaaactt gcgataatga actaggtaaa atttatcaaa aagaggataa
     9361 atattttata gagtttaaaa aactcattgc taaaaacaat aaagaattta gcgaaattca
     9421 tagtggcaat gaacatgaaa tccaattacc aaataaaatc agtgcattaa gttttttaag
     9481 aaaggaaata tagatgaatt ttgtttctat tttaatggga agcaagagtg attatgagac
     9541 tatgaaagag gctgttaaaa ctttagaaag ttttggggta aagtatgaac ttatcatctc
     9601 atcagctcat cgtagtccaa aaagaacaaa agagtatatt gcaaatgctg aagaaaaagg
     9661 tgcgaaagtt tttatagcag cagctggaat ggcagcgcat ttagctggag ctgttgcagc
     9721 ttatacaaca aaacctgttt tgggagtgcc tatgtcagga agcaatcttg caagtatgga
     9781 ttctttattt tctacggtgc aaatgcctag tggaattcct gtaggaactt tagctattgg
     9841 taaggctgga gcgatcaatg ctgcttattt ggctatgcaa attttagcta tttatgatgt
     9901 tgatttagca caaaagctta aagaagatcg tcttgaaaaa gaaaaaaaac ttgtatctga
     9961 ttcaaaagaa gtagaagttt tattataagg gataaaaatg caaacctatc ttgaacttga
    10021 agaattttgt aaacttgtgc atttaaatga agatgtggtt aagggtatga tggccaatgg
    10081 ggctttaaat tttaaagaag aagagggtaa aatttacatc gaagctcatc aaggtacttt
    10141 tagtgtagta cctagttctg caaaatctca aactgcaatg gtaaattcaa tgactttagc
    10201 aggagaaagt tttgttgaaa aaacaatagg aactatttta aatttgcatg aaaaagtttt
    10261 agatgctaaa gatgaaacac ttgaagcatt aaaaaatgag aataaatttt taaaagacgc
    10321 tctttattct atgcaagaac tttatgatga agatagaaaa actatagaaa ccttaaacaa
    10381 tgagctaaaa catgcgcgtg aagagataga atttctcaag cgtaaatata aattaatgtg
    10441 gagtaaaacc gcagaaattt ttggagctaa gacagagcct gatttggaaa tgaataaaaa
    10501 tttagaaaaa cctattgaaa atatggaaca ataaagagag atgcaatgac tttttcacaa
    10561 atgatactta atttacaaaa ttattggcaa gagcaaggtt gtgcgattat gcaaccttat
    10621 gatatgccag caggtgcagg aacctttcat ccagcaactt ttttaagaag tttaggaaaa
    10681 aaaccttggg cagctgctta tgtggctcca agtagaaggc ctactgatgg acgttatggt
    10741 gaaaatccta atcgcttagg tgcttattat caatttcaag ttttgattaa acctagtcct
    10801 gataatatcc aagaattata tcttaaaagt cttgaaaatt tgggttttga tttaaaaagt
    10861 catgatattc gttttgttga agataattgg gagagtccaa gtttgggtgc ttggggttta
    10921 ggctgggaag tatggcttga tggtatggaa gtcactcaat ttacttattt tcagcaagtt
    10981 ggcggtatag cagtagattt agtaagtgct gaaattactt atggtcttga aagaatagcc
    11041 atgtatcttc aaaatgttga taatgtttat gatatagttt ggagtgaatt taatggagaa
    11101 aaaattaaat acgcagatgt gcataagcaa agtgaatatg aatttagtaa atacaatttt
    11161 gaagtaagtg atgttaagat cttaaatgag cagtttgaaa attcttacaa agaatgtaaa
    11221 aatattttag aacaaggact agctttacct gcttatgatt attgtatgct tgctgcacat
    11281 acttttaatc ttttagatgc aagaggagca atttctgtag cacaaagaca agattatatg
    11341 ttaaaaattc gtgaactttc aaaaaattgt gctgaaattt ataagaaaaa tttaaatgaa
    11401 gctgagtgaa atttataatt ttttagatca attaagtccc tttgatatcc aagaatcatg
    11461 ggataatagt ggaattttgc ttggagatag ggatagtgaa atttcaactg tttatttaag
    11521 cttagatatt gatgaaaata tcattaaaga agcgagtgaa aattctttaa ttatcacaca
    11581 ccatcctttg atatttaaag gtttaaaaga tttatatgac aagacttatc ctagagcttt
    11641 tattaaagaa atgatttgta aaaatatttc tttaatcagc atgcatacaa attacgattt
    11701 aagtcattta aatatttatt ttacggaaga aattttaggt tttaaaattt cttttaaaga
    11761 cgaattttta atttatgtag aaaattctat atcttttgaa gctttgtgtg actgggtgaa
    11821 aaaaaagtta aatttacaaa ttttacgtgt aagcaattgt ggtaaaaaag acattaagcg
    11881 tattgctata tgtactggaa gtggcgggga tttaatttct aaagtagatg cggattgttt
    11941 tttaagcgga gattttaaat atcatcaagc tttagaggca cttagtaatc aaatcagtct
    12001 tattgatttg ggtcattttg aaagtgagag atatttttct caatgtttag caaaagactt
    12061 gaaaaatttg ccgctacaag ttataataac agtttcaaaa aatccatttc aatattttta
    12121 aggaaaataa atgaataaat atctcgaaca attagtgctt ttatcaaaaa tagatcaaga
    12181 aattgatagt tatgaaccaa aaatagacag tattaatagg actttaaaag atgctgagtt
    12241 aaaaatagga aaaatcaaca cagatttaga aaaaatcgat gaagaaatca aagatataga
    12301 aaatcaaaaa gtacaaaata atgctcatat ttctgagttt tcggcaaaaa ttaaagagct
    12361 ttctaaaaaa agtggtgcag taaaaacaga aaaagaagct aatgctttaa aaattgaaga
    12421 agatattgca aaagagcaat tagacgctgc aaatgatgaa attgtaagac tggataaaat
    12481 tttagagaat aaagaaactt ataaaaaaga acttgaagaa gaaaaaatta aacaagagca
    12541 aaatattaat gagattagag taagcattaa atctgaaatg gaagttcttg aaaaagatag
    12601 aatgagtgtt tatgataaaa aaaccaaact tgtgggcgag atgaatcaaa aagttttaag
    12661 tttttatgaa aaaattcgca aatgggcgaa aaatactgct gtagttcctg ttaaaaaaca
    12721 agcatgctat ggatgtttta tgaaaattta cgataagact tatctgtctg ttgtaaaagg
    12781 tgaagagatt gtaacttgcc ctcattgtgg aagaattctt tataaagagc aagaagaaca
    12841 aaattgatct ttttttatta ttttttaact tgggcggcat ttttattttg tgccgtcttt
    12901 attcttttgc tttctttttt aaaatccaaa tacaaaacta gtttaaaatc ccgatttttt
    12961 ctttataaaa atttacatca agaaaaagct gatgtacatt ttcatgcttg ttcttacggg
    13021 gaggtaagaa gtattaaaac tttggttttg aaatttgatt caagaataac tactattact
    13081 caaacaggtt ttgaatatgc aaaagaattt tgtaaaaagg taaattatct tgcttttgaa
    13141 aattttttgc ctttttggtt taagccttgt aaggttttgg taatttttga agcagaatat
    13201 tggcttatgc ttgttttcat ggcacacatt tataaaacta agattatttt gcttaatgca
    13261 agaatatctg ataaatctta tcattcttat caaagatttt ctttttttta taaaaaaatt
    13321 ttttcttata ttgatgaagt ttttgctcaa agtgaattag ataaagtaag acttgaaagt
    13381 ttgggagcta aaaatgttaa aatttttaaa aatattaagg caaatttaga aattaaaaat
    13441 aataaaattt ataccaagcc caaagaaaaa cttatcattt ttgccagtac tcataaggac
    13501 gaagaagagc ttttgcttga tcattttaaa ctagaagaaa atgaaaaact cattatcgcc
    13561 ccacgacacc ctgagcgttt taaagaagtt gaaaatttgc ttttaaacaa aggtttggaa
    13621 tttgaaaaat ttagttcttt aaaagatgaa aataagaaat ttgctaaaaa aattttgctt
    13681 ttagatgctt taggagagct tgtaaatttt tatgcaattt ctgatgttgt tgtgcttgga
    13741 ggttctttca tagaaggcat aggaggacac aatcctatag aagtggcata ttttgacaat
    13801 gtattaatca gtgggaaatt tattcataat caaaaggctt tatttgaaga agtagaaaat
    13861 gtatattttt gcgaaaattt aaaagattta aatgataaaa ttcattattt aaatttaaaa
    13921 gttaaaattt ccaaaaaaga aaatttagat cttattatac agaccataca aaagggaatt
    13981 gatgcaagaa aaagcttata aactcttagc tttgcaagaa aaaatttcaa atcgtgaagc
    14041 taaagatttg attgataagg gttgtgtttt ttcacatgga aaaaaagttg tggttgctag
    14101 agctttgatg agcgataagg caagatttaa tgtgataaaa accaaaaatc ctcaaattat
    14161 ttttgaagat gataagatta ttgctattaa taaaccttat gcttatgtga gtgaagactt
    14221 ggagaaaaaa tttaatgcca agcttttaaa tcgtttagac aaagaaacaa gcggtgtgat
    14281 tttgctttgc aaagatgaag attttagaaa gctttgtata gaagaattta aaaaacatag
    14341 agtttataaa agttatattg cggttttaga tggggttttg gctgaagagg ttgaagtgaa
    14401 tgagcctatt tttaccataa aagcaaaagg cggggcgtta agtaaagttt caaaagatgg
    14461 tttaagtgcc ttaagcatca ttactcctat tatgatgcag tcaaaaaaaa ccttaacaaa
    14521 aatagtcatt caaacaggta gaactcatca aatcagagtg catgctaaat ttataaaaca
    14581 tggcgttgta ggtgatgaaa aatatgctaa aatttcaagc gatagaatgt atttacatag
    14641 ttatg
//
LOCUS       DARGEX010000037        14627 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.037, whole genome shotgun sequence.
ACCESSION   DARGEX010000037 DARGEX010000000
VERSION     DARGEX010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14627
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.037"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..635
                     /locus_tag="SF010_000874"
     CDS             <1..635
                     /locus_tag="SF010_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229819.1"
                     /translation="FIDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELLNLELFSRK
                     IIAYKSASFVYFDFLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNFFMFCSLLA
                     FVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQRNNALKSEQEQILLWMNNFNFLKDNN
                     LSLIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK"
     gene            632..1393
                     /locus_tag="SF010_000875"
     CDS             632..1393
                     /locus_tag="SF010_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8229820.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            1359..2213
                     /locus_tag="SF010_000876"
     CDS             1359..2213
                     /locus_tag="SF010_000876"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG8229821.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFMQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            2200..2910
                     /gene="cmoA"
                     /locus_tag="SF010_000877"
     CDS             2200..2910
                     /gene="cmoA"
                     /locus_tag="SF010_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG8229822.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2900..3121)
                     /locus_tag="SF010_000878"
     CDS             complement(2900..3121)
                     /locus_tag="SF010_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8229823.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(3118..3564)
                     /locus_tag="SF010_000879"
     CDS             complement(3118..3564)
                     /locus_tag="SF010_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229824.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKEKAKE
                     CKESGTLSEDCINALKVGVKSTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDI
                     NQSSENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(3622..4254)
                     /locus_tag="SF010_000880"
     CDS             complement(3622..4254)
                     /locus_tag="SF010_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG8229825.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(4265..4915)
                     /locus_tag="SF010_000881"
     CDS             complement(4265..4915)
                     /locus_tag="SF010_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG8229826.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(4912..5538)
                     /gene="nth"
                     /locus_tag="SF010_000882"
     CDS             complement(4912..5538)
                     /gene="nth"
                     /locus_tag="SF010_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG8229827.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5619..6440
                     /gene="peb4"
                     /locus_tag="SF010_000883"
     CDS             5619..6440
                     /gene="peb4"
                     /locus_tag="SF010_000883"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG8229828.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6440..7504
                     /gene="fbaA"
                     /locus_tag="SF010_000884"
     CDS             6440..7504
                     /gene="fbaA"
                     /locus_tag="SF010_000884"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG8229829.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            7599..9041
                     /locus_tag="SF010_000885"
     CDS             7599..9041
                     /locus_tag="SF010_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8229830.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            9038..9991
                     /locus_tag="SF010_000886"
     CDS             9038..9991
                     /locus_tag="SF010_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG8229831.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9978..10853
                     /locus_tag="SF010_000887"
     CDS             9978..10853
                     /locus_tag="SF010_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG8229832.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFARPYKEFYELYMNLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10845..12188)
                     /locus_tag="SF010_000888"
     CDS             complement(10845..12188)
                     /locus_tag="SF010_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8229833.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENIIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFILLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(12239..12907)
                     /locus_tag="SF010_000889"
     CDS             complement(12239..12907)
                     /locus_tag="SF010_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG8229834.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDVHQIS
                     NAILQVSEPRKPCVKISRIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12904..14607)
                     /locus_tag="SF010_000890"
     CDS             complement(12904..14607)
                     /locus_tag="SF010_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG8229835.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSLIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
BASE COUNT         5321 a         1852 c         2386 g         5068 t
ORIGIN      
        1 aatttataga taatgcttat aatgatttta gaatagttgt tatcgctagt ttttttactg
       61 ctttatttta tgcattttat gggctttttt ttacttacaa tgaactttta aatttagaac
      121 ttttttctag gaaaatcatt gcctataaga gtgcttcttt tgtttatttt gattttttat
      181 ctgaattttt acattttgtt tcaaatttaa aattttttat tttttcttat tttggatatt
      241 tggggtttag ggctttaaat tttatttttg atttttttaa tttttttatg ttttgttctc
      301 ttttggcttt tgtttttaat tttgttttga aaataaagat aaaaataatt gttttatttt
      361 tatgttttat catggtttta ggaaattatt ttttaaaaga gcaaagaaat aatgccttaa
      421 aatccgaaca agagcaaata cttttatgga tgaataattt taatttttta aaagataata
      481 acttaagttt aattcaaaaa gaaaaagatc tttttgaaaa agatcttaaa gatcttagag
      541 aaatttttaa aaaaaatgct tttgaaatag gtatttggtg gttttctaaa gaaaaagaag
      601 acttagaaaa aagaataaat gagagtttaa aatgagattt gatttttttg tttcaaagcg
      661 tttaaatatc agtagaaata aagccttaga gcttatagaa aatgaagaga ttttacttaa
      721 tggtaagagt tttaaagctt cttttgatgt aaaaaatttt ttagaaaatt taaaaaaaac
      781 gcaagattta aatcctgaag atatactttt agccaatgag ttaaaattgg atcttttaag
      841 tgaaatttat gtttcaagag cagctttgaa attaaaaaaa tttttagaag aaaatgatat
      901 tgaaataaaa cataaaaatt gtcttgatat aggatctagt acgggcggtt ttgttcaaat
      961 tttacttgaa aatcaggctt taaaaatcac tgctcttgat gtgggtagta atcaactcca
     1021 tccaagttta agagcaaatg aaaaaattat cttgcatgaa aatacagatc ttagagcctt
     1081 taaaagtgaa gaaaaatttg aacttgttac ttgtgatgtg agttttattt ctcttattaa
     1141 tttactttat tatgtcgata atttagcttt aaaggaaatt attttacttt ttaaacctca
     1201 gtttgaagtg ggaaaaaata tcaaaagaga taaaaaaggt gttttaaaag atgacaaggc
     1261 aatcttaaaa gcaagaatgg attttgaaaa agaatgtgct aagttaggtt ggcttttaaa
     1321 aaatacgcaa aaatcaagca ttaaaggaaa ggaaggtaat gttgaatatt tttactacta
     1381 tatcaaaaat taatattact tctttagcca taggttgttt tgatggtatg catttaggac
     1441 atctaaaact tgtaaaatat ttagatgaga atggggcttt gctagttatt aataaattta
     1501 aaggtcaatt tctttgttca aatcgtcaaa aagaagaaat ttcaggaaaa aaagttatag
     1561 aagtggattt tgaaagtata aaatctttag atggtaaaga ttttttaagc tttttgaaaa
     1621 aagaatttac cagtttaaaa tttatagtcg tgggttatga tttttctttt gggaaaaata
     1681 gggcttatag tgctaaagat attgagtttt taagtgggat aaaaactata atagttgatg
     1741 aatttagcat aggtggaata ggtgttcatg caagtttaat taaggatttt ttatcaagag
     1801 caaatttgca aaaagcaaaa gaatttttag ggagaaatta tagcatcaaa ggaaaggtaa
     1861 ttaaaggaca aggcttaggt tctaaagaac tttttgcaac tataaattta gattgcgaag
     1921 gttatttttt gcctcaaaat ggtgtttacg ctactttgtt aaaaagtcaa agaaaaactt
     1981 ataaaagtgt gagtttttta ggtgtaagat caagcgatga aaattttgct atagaaagtc
     2041 atattttaga agaattgggt gaaaatttca tgcaaggaga gttttttgaa ctcgagttta
     2101 tatcttttct aagagagaat caaaaatttc aagatctaaa aaaacttaaa aatcaaatta
     2161 ctaaagatat agaacaggct agagaattat taaggaaaaa tgatgaaaga tgaacttttt
     2221 aaacaaaacc ctaaaaaaca atttgaattt gataaaagcg tggctagtgt ttttgatgat
     2281 atgatcaatc gttctgtacc attttataga gaaaatttag aactttgtgg caatttattg
     2341 gctaaaattt tacctacaaa tgcaagtgtt tgcgatttgg gctgctcaag tgctaatttt
     2401 ttgatttttt tggcaaatct aagaaaggat tttaaacttt ttggcgtgga taattctgct
     2461 tccatgcttg aagttgcaaa atcaaaagct aaagcttatg ggcttgatat aagttttttt
     2521 gaagctaatt tatgcgaatt tgattttttt acttgcgatg tttttgtagc aaattatacc
     2581 atgcagttta ttcgtcctcc taaaagacaa gaattgcttg atcaaattta taaaaattta
     2641 aactctaaag gcattttgat tatgagtgaa aaaatccttt atgaagatgc ttttttgtct
     2701 aaaaatatca tagaacttta tgctgattat aaagaaaaac aaggctattc taagtttgaa
     2761 atcgcagcta aaagagaagc tttggaaaat gttttaattc cttatagtca aaaagaaaat
     2821 ttaaatatgc tagaaaaggc aggttttaag aaaatagaaa gtatttttaa atgggcaaat
     2881 tttgaaactt tcatagcttt taaggattag aaatattttc atcttcccat tcatcttttg
     2941 ggaaacctat cttatatgca ttaacacaat cttgactaat gatagctttg tgtctgcatt
     3001 ctaaacttct tttttttgct tcctcggggt gattttgata atattctaca cttttggttt
     3061 gttcgcatgc tgcaaaaaat ataccaataa ggcttaaaaa aagagttatt ttcatggtca
     3121 tttttcctgt gtcatattaa catcatcgct aaagatagaa ctttgattgt tttctgttgt
     3181 tttggaagga taaatttcag aaggtgtttc tgctataggt ggtattataa tactttcatt
     3241 attttctgaa ctttggttaa tatcttttgt ggttttttct ttttttaaat cattttgttt
     3301 taaagcttct aatatttgat tatcagattt tttcggtgtg tttggactgt atttaccctc
     3361 ttcatttgtt gatttaacac caacttttaa tgcattaata caatcttcgc taagagttcc
     3421 gctttctttg cattctttcg ctttttcttt cgctttttct tttgcttcgc taggaagatt
     3481 tttgtagtaa ttttctgttt tactatcaca agctgttata ttaataacta ttaaaattgc
     3541 aagtaaaata cttagtcttc gcatttatca atctcctaaa atttttaata tcttagcaaa
     3601 cttgtataaa gcaacgataa attatttttc ttcattgtaa gaaaaaatag gtaaagacca
     3661 ttgatatttg atagctaaaa gccttgcaaa aactcctata aaaagagtta aaagtgtgca
     3721 aactagggca ttaagctcaa gccaaattat tagagaataa tagattgctc ctgcaattat
     3781 ggcaattcct gcataaattt ctttttgaaa caccaagggg attctcatac ataaaatatc
     3841 tcttaaaatt ccaccaaaaa caccggtaat tacagcggca gcaacggcta tgataaagcc
     3901 atggttttga tctatagcta tttgagctcc aagtatgcta aaaacaacaa gtcctatagc
     3961 atcaagagtt agaaataaag tttcaagttt ggttactacg cgcggaattt ttgtggctac
     4021 aagggcgcaa aaacagatta aaataatata ttcaggatgt ttaacccaag ttaaaggata
     4081 atgtcctaaa agcacatctc gtatgcttcc gcctccaatt gctgttacga gagcaataaa
     4141 aataactcca aaaagatcca ttttgtggcg tcctgcagct aaagctcctg tcattccttc
     4201 tgcggaaata cctatgatat aaagagtggt tatcgtaaga gcatttatct ccataattta
     4261 taccttaaaa tttatcacaa tttatttgat actgtttaat attttcatca tttacttcgt
     4321 ggtttggtgc ttgatagcat tctttaaatt tcggagtttt aataattttc acataaaaac
     4381 ttggtatagc aatacggttt ttaatgtatt gtggttcttt atcgtaaagt actaaattta
     4441 aaacttcgat actttgaaat tctaaagcta aatttctttc tctttgttcg atttcattcc
     4501 aaattttatt atttatttgt gcattttgtg gggtaatatt actcattaaa aatactgaat
     4561 tttgagcagc tttactaaag ctaaaagaag cattaggcgc agtgtgtcct cgtgtgtaac
     4621 cactgttttt ataattactc caagtagtgc ggtatttttt aggaatattt gtatcatctt
     4681 caaagcgagg gcgttttttg atttgtctat ctttcaaatt tgaagcttct accttataag
     4741 caacagcttt tgtgcctttg agtttataat catagcaatt tagataaaaa aacttatcta
     4801 agatttgcga gcaatttata ttgttaaaat aagaagaaaa atcagcacta ggcttgtaag
     4861 gttctaaggc aaaaatatta agagatatag tgagtaaaaa gatgaaaatt ttcatttaag
     4921 ttccttatct ttacttttgc aaagatgatt taaaaagcat tctttacata aaggtttttt
     4981 agctttacag gtgtaacgtc caaaaagaac catggcttga tgaagatagt taagattatc
     5041 tttaaatgtg cgtgttaaat cttcttctgt agcttctgga gtttttgctt tgctaagtcc
     5101 taagcggtga gaaactctaa aaacatgagt atctacagcc atgaaatttg ctccgcacca
     5161 ttctattaaa actacatgag cggttttttg tcctacgcct gctaaggatt ttaaattttg
     5221 ttcatcaagg ggaatttctc cgtcaaaatt ttcacaaact gcttttgcca tttttataag
     5281 attttgtgct ttattattaa aaaatgaaca agtttgtata taggttttaa gacttgataa
     5341 atttgcattt gcaagggatt taatatcagg ataagcttta aaaagatcag gagtgatgag
     5401 attaactctt ttatcagtgc attgggctga aagcattacg cagactaaaa gctcatataa
     5461 atttgaaaat ttaagctctg ttacaggctt gtcaaaatgt tttaaaaaaa gttctttgat
     5521 ttctaaattt cttttcattt tttaatttta gttaattagc tttaaaccaa gtttagatat
     5581 aattgatttt atatacattt tattaaaaag gaaacctaat gaaaaaattt tctttagtcg
     5641 cagcaacttt gattgcaggt gtagttttaa atgtaaatgc agctacagta gctactgtta
     5701 atggcaagag cattagcgat acagaagtaa gtgaattttt tgcccctatg cttagaggac
     5761 aggattttaa aactttgcca gataatcaaa aaaaagctct tattcagcaa tatattatgc
     5821 aagatttaat tttgcaagat gctaaaaaac aaaatttaga aaaagaccct ttatacacaa
     5881 aagaacttga tcgtgcaaaa gatgcaatac ttgttaatgt ttatcaagag aaaattttaa
     5941 atactattaa aattgatgcg gctaaagtta aagcttttta tgatcaaaat aaagacaaat
     6001 atgtaaaacc tgcaagagtg caagcaaaac atatcttagt agcgacagaa aaagaagcta
     6061 aggatattat taacgaactt aaaggtttaa aaggtaaaga actagatgct aaatttagcg
     6121 agcttgctaa agagaaatca attgatccag gttcaaaaaa ccaaggtggt gagcttggtt
     6181 ggtttgatca atcaactatg gtaaagcctt ttacagatgc tgctttcgcg cttaaaaatg
     6241 gtactattac tacaactccg gtaaaaacga attttggtta tcatgtaatc ttaaaagaaa
     6301 attcgcaagc taaaggtcaa atcaaatttg atgaagtaaa acaaggtatt gaaaacggac
     6361 ttaaatttga agaatttaaa aaagttatca atcaaaaagg ccaagatctc ttaaatagtg
     6421 ctaaagtgga atataaataa tgggtgtttt agacattgta aaagcagggg tgattagcgg
     6481 agatgagctt aataaaattt atgactatgc taaagcagag ggttttgcta tccctgctgt
     6541 taatgttgta ggaactgatt ctattaatgc agttttagaa gctgcaaaaa aagttaactc
     6601 tccagttatt atccagtttt caaatggtgg ggcaaaattt tatgcaggga aaaattgtcc
     6661 taatggagaa gttttaggtg caattagtgg ggctaaacat gtacatttac ttgctaaagc
     6721 ttatggtgta cctgtgattt tacacactga tcatgctgca agaaaacttt tgccttggat
     6781 tgatgggctt attgaggcaa atgcacaata taaaaaaacc catggacaag ctttatttag
     6841 ttctcatatg cttgatctta gcgaagaaag tttagaagaa aatcttagca cttgtgaagt
     6901 ttatcttcaa aaacttgatg ctttaggtgt cgcgcttgaa atagaattag gttgtacagg
     6961 tggcgaagaa gatggagtgg ataatacagg tattgataat tccaagcttt atacccaacc
     7021 agaagatgta gctcttgcat atgaaagact tggaaaaatt agtgataaat tttcaatcgc
     7081 agcaagcttt ggaaatgtac atggagttta caagccagga aatgttagct tacaacctga
     7141 aattttaaaa aattcgcaaa aatttgtaaa agataaattt gctttaaata gcgataagcc
     7201 tataaatttt gtatttcatg gtggtagcgg tagtgagcta aaagatatta aaaatgcagt
     7261 aagctatggc gtaattaaga tgaatattga cacagatact caatgggctt tttgggatgg
     7321 ggtgcgtgaa tatgaactta aaaatagggc ttatttgcaa ggacaaattg gaaatccaga
     7381 aggtgatgac aagccaaata aaaaatacta tgatccgcgt gtttggttaa gaagcggtga
     7441 agaaagcatg ataaaacgtc ttgaaatcgc ttttgaagat ttaaactgta taaacaaaaa
     7501 ctaagcattt taaaagctta gttttatttt gttttaaaaa tttttatcaa attaagtagc
     7561 aatctttaaa ataaaatttt taatgaggta ttggtttcat ggatattaaa tcagatgaaa
     7621 tttcagaact tgttttgcct gaaggcaaag atgcaagagg ttctttggtt tattttaaaa
     7681 ttatttttat tccagctttt ctttatattt tgattttatt gggttatttt aatgtaattg
     7741 actttaaggt cgaattacat acggttatta tgacaggtgt gatttttttt acagcattga
     7801 tttttgctag acatagtgct gagtatgcgt atagtatttt tgaacaacaa aaagatgaat
     7861 ttaaacaggc tttaaaaaga catattatga ggcattttct tgccataggg aaagacacga
     7921 aatcaaatgc caattttgat gactttgctt atacatatat taagggtgca agaaatgaga
     7981 attttgctag tataggttcg gcaatttttc caatgatggg aattttagga acttttatca
     8041 gtatagcttt ttcaatgcca aattttagtt ctagtgatac agccgcttta gaacaagaaa
     8101 ttgcagattt gttaagtgga gtgggaactg ctttttatgt ttcaatttat ggaatttttc
     8161 ttgcattatg gtggatgttt tttgaaaaat atggtaaaag caaaatagat cgtttgctaa
     8221 atcgtcaaaa aaacgctaca agtggatttt tttggacaaa agaagagctt gatcaaagat
     8281 atttaactga aagtttgcaa cattttgaaa aaattggagc aatttttaaa caagttagta
     8341 atgatgattt ttttgcagag cttgatcatg ctattgatag aaaatttggt attttccaag
     8401 atatgctaaa tgtagaagaa aaggctatta gattaagtag tgaacatatc aaacaaacca
     8461 tgggtgagct tagtaaagca caaagagatc aacgcgatct tggaaagctt tatagtgaaa
     8521 tgttaaatgg tataggtttg ctcaatcaaa atttaaaaga aatcaataca agaatgtcag
     8581 aacaatataa tcgcttgctc gatatcagta gtgataaaat tcatcatctt gataagacac
     8641 taagtgcatt cgatgaaaaa atagagcgtt ttggtaaaaa ttttgaactt tatgaaaaag
     8701 caatgttgga aagtcaagaa aaggtttttg agggatttaa agcaagcttg tttgaaggta
     8761 tgcataaatt taaagaagta tatgaagaag aaaaaagtat tgatgctaaa atcaaaatga
     8821 tggatgagct taaaaaagaa atgaaagcac ttgatgaaga aacaagtcaa atgatgagca
     8881 agctttctgg ggatgaaaat cagaataaag aaaatgaaac caaacaaata gaagattttt
     8941 cagagtctaa gactgaagaa aatcaagatg aaattcaagc agaaatatct aagcaagaaa
     9001 gcaatgatga gctaaaaaat gaagataaag aaaataaatg aaaaatgagt caaaagaaga
     9061 tagcaatttt tggatagctt atgctgattt aatggcagga ttgctgtttg tttttatttt
     9121 gctaataggt gctattgttg taaaatatgt tttaactcaa agtgatttaa aagaaatcaa
     9181 agataatctc aataaacaag aggcacgctt agaggagagt aaagaagagc ttagaaataa
     9241 agaagccata gtgtttaaac taagttctga tttaaacaat gcttctagtg ctttaaatct
     9301 tgctaattct caaaaagcag aattagaggc taatattaca aattacaagc agttaagtaa
     9361 agatttaaac tcaactttag ataataaaga taagcaaatt ttgattttac taggtcaact
     9421 agagaaaaaa gatgaagagc ttaaaaattt acaagaagat tttcaaaaag ctaaagaaaa
     9481 ggtgcaaaat cttggtttga ttcgtgaaaa tttaagcaag gaattacaaa gtaagcttga
     9541 taataatatc actatagatg aaaagacagg atctatttct ttgcctgctg aagtactttt
     9601 tgataaagat tcttatgtgt taaaaaatga ggcaaaggca agtttgagaa aaatcttaag
     9661 cgaatatttt gatgctattc ttgaagatcc aaaaattttt tctaacattg aaaatatcat
     9721 tattgaagga catactgata gtgatggatc ttatatttat aatttagatt tgtcgcaaaa
     9781 aagagcttat gaggtgatga attttatcta tactttttat aagagtgata agcttcaaaa
     9841 gcttttaatg gcaagtggac gttctttttc agatcccgtg tttgtcaacg gagttgaaga
     9901 taaggataag agtcgtcgca tagaaataaa atttagcatt aaaaatgata atgctttaaa
     9961 agatgtagaa aaattctttg aatttcatta aaacaattag tcctatacaa aaaatcaatt
    10021 ttaacggatt tgaattttat attaaaagag atgatttatt aggagaaatt aatggaaata
    10081 aagctaggaa acttgctttt tatatccatc aaagatatcc taaaaatcaa tcttttgtaa
    10141 gttatggagg aagccaaagt aatgctttgg cggcattaag tatttttgct aaacaaagat
    10201 catataagct tgtttttgct tgtgaaaaaa tttctacttt tcttaagaat aatccttgtg
    10261 gaaactatgc tttagcttta gaaaatggtg ttgattttgt agaaaatatc cattctttat
    10321 ctttaaagca atttgctttg tctttgtgta aaaaagatga tatttttata gaacaaggca
    10381 tagctaattt agaagctcaa tatggctata tggaacttgc tcaagaaatt caaatgcaaa
    10441 gtcaaagttt aaagcttgat tttgatattt ttttaccttc gggcacaggc acttcggcag
    10501 cttttttggc aaagtattct aaatttaaag tatttacttg cgcttgtgta ggtgatatta
    10561 aatatcttaa aaaacaaatt ttaacattag atccaagcta tgatttttca aatttagaat
    10621 ttttaacaag tgataaaaaa tatcactttg ctagaccgta taaagaattt tatgagcttt
    10681 atatgaattt aaagttaaag tgcaatatag aatttgactt gttgtatgat attttaggat
    10741 taagtatagc attaaaacaa gagtggaaaa aaccattgct ttatatacat caaggtggaa
    10801 ttttaggaaa ttccactatg ctagagagat ataaatttaa aaaactagtt taaaattcca
    10861 tagataaaaa tgattaaaat aatcaaaggc actatatatt ttacataata aaaccaaatt
    10921 ccaaaccatg aacttttaag tgtattgtta ttgctaagtt cttttagact ttcttgttta
    10981 cctaaaatcc aacctacata aatgcagcaa aaaaatgcag ttaaaacaaa caaaatattt
    11041 ccactaatga aatcaaaact atcaaaaatg ttttttcctt tgatgataac aatatcacgc
    11101 caaggcccat aagttagaat acagggaaga ttgccaagta tgaagataaa ccctagagtt
    11161 aggttaatag aaagattttt agaatattta aatttttctt ctaatacgct aataataact
    11221 tgataaattg gcaagcttgt ggttaaagct gcaatcaaga gtaagataaa aaataaaata
    11281 cacacaatgg tgccaaaatg gatatgagaa aatgctatag gtaaagtttc aaaaaccaaa
    11341 gaaggcccgc tatctggagc aagtcccgct gagaaaagtg ctggaaaaat cataaaacca
    11401 gccaaaacag ctatgatagt atttaaaacc cctgtataaa tagcggtttt tgccatattt
    11461 tcatttttat taagatgaga tgaaagtgtt atcattaccc caaaacctag ggataaagca
    11521 aaaaagactt gtcctaaaac atcgattaaa agttttggtg ataaaatttt actaaaatca
    11581 ggttcaagat aaaatttaac tccagccata gctccatcaa gggttaaatt gcgtcctaca
    11641 acaataataa gacagataaa taataaaggc attaaaaatt ttacggattt ttctatacca
    11701 tctataatgc ctctttttaa aataatataa ttaataatta caaaaacagt ggtaaaaata
    11761 ccaactccta aaggattgaa ggctattttg tcgttaaaaa actgatgagt aaattctttg
    11821 cttactacat tggcaagact aaaattccct agggttaatt cccaaatata aactaaaacc
    11881 catcctccaa gtaccatgta gtaagccatt atgccaaagc ttcctaaaag tcccatatat
    11941 ccaatacttt gccatttttg tttgaaagca tctacgctat ttgtcatcgc ttttctgcct
    12001 atgatatttt caactaaaat aacaggaatg cctatgataa tcatagctat acaaaaaact
    12061 aatacataag caccgccacc attttctcct acaagatagg gaaaacgcca agttgctcca
    12121 aatcctatgg ttgctccagc aactgttaga atataagtta gtgtgctact ccatgtttgt
    12181 ctttgcatga ttatcctttc gaaaaagaat tattttacct aaaaataact ttaaaaactt
    12241 ataagctatc catatagctt atatcgtaag tattttttaa gcgtttgtgt atcgtttcgt
    12301 gccaattttg agatatgaga gagtttaatt tttctaattt atctaataaa ttcggatttt
    12361 gcttaagaat ttgatgcggg gagtaaaaaa gttgattgag ttcaaataca ctaagtgaag
    12421 tagaattttt ttctaaaatt ttaatgtttt catgctttcg tatttgtcca acttgtaaaa
    12481 ctttataata ccatccactc aagcccgttt taaaaatttc atgtgtaaaa tttgaattat
    12541 tgtgaattct agaaattttt acacaaggtt ttctaggttc gcttacttgc agtattgcat
    12601 ttgaaatttg atgtacatca cctatgcaaa cattttgttc gcaaagccca tcgatgctca
    12661 aattttcacc cattgagcca aaatttagct ttttattaag aaatctttcc catatgggat
    12721 agttttgaca agagttggca aaaatagcct tatggtagcc tccatgatga attttatcag
    12781 ctatttgatc atctaaaaca cctagaaaat caatttgtgt ttcttctagg taagtatctt
    12841 taataaatgc gctttggaaa tttttatagt ttttaatttt ccctatttgc aaactttgaa
    12901 ttttcatggt tctatttttt ttaataaatc atcagcactg ataaaacccg tgatttttaa
    12961 tttttctttt ccattttcaa agaaaattaa aacaggtggg ccaaaaacat taaattcttt
    13021 catggtttta atttgttcat tattattttc gcttacatca actttgataa gtttgtaatt
    13081 ttgcattttt tgtatgattc tttcatcgct aaaggttaat tcatctaaaa gtttgcaatt
    13141 ttcacaccaa gatgcagtaa aatcaagcat tataggcttt gtatttgttt gtatttcttg
    13201 ctttaattgt tcaaaattgt tgatataatc atagcttaaa gcatgttttg aggcagatat
    13261 agtattgaaa tttaaaggat ttaagaaatt tttagcccca aaaagtcctc ctaggaaaat
    13321 acttagagaa taagctaaaa taagaattaa aatacttttt ttaattttag aaattattgt
    13381 aaaacttttt tcaaaaattc ccataaaaac actaaaaaat acacctaaaa ttccataggc
    13441 aattaaaatg taattttctt caataattct agaaagtatc caaatagcca tagccaacat
    13501 aacaaaacca aagaaaattt ttactttttc catccaaaaa ccaggtttaa taaaacctaa
    13561 tcctaagcct atgaaaagca aaggtatacc catgccaaaa ctcatgataa aaagcgcact
    13621 accacctaat aaagcattgc ctgtattggc tatataaatt aaagcacctg ctaaaggagc
    13681 tgctacgcaa ggacctacta ttaaagcaga taaaaatccc atgatggcta tacctaaaac
    13741 tcctttccct ttttcgcttt ttttatgtat aaaggtttga aatcttaatg gcaattcaaa
    13801 acgaaaagct ccaaacatag caaaagcaaa agctatgaaa attagagcaa aaagaattaa
    13861 aataataggt ttttgtaaaa ttccttgaat acttgctcct agaaaacttg ctataactcc
    13921 agcaatagca taggctaaag acatgaaaaa aacatagata agagagagaa aaaaactata
    13981 tttttttgaa aatttagcat tactttttgc tacgataaga gaagataaaa tcggaatcat
    14041 aggtaaaata caaggtgtta aggagagtaa aagtccatag ccaaaaaaac ttagcaaaat
    14101 ccaaaaaaag ttatctgttg ctaaaaaatt tgctatagag ctttcttcag attcaatttt
    14161 agttttttta tctgtttttt gagctttgta aggttttgaa atttcaaaag catctttttt
    14221 agaaatgaga tcaaagtacc aagtttgagg attataacac aagccttgtt cagaacagcc
    14281 ttgaaattcg agtttgatta aatttgtggt attttttgca aagcgctcta gtaataaatt
    14341 tggcaaagct aaatttaatt tttgataata aacattttca ttacctcttg tagaactttg
    14401 aggtagatta atcaaagaac ttatatcttt ttcgtttata tataatttaa gtttattaga
    14461 ataaagataa atatcttttc caagttcaat atcaattgag atagagttat tataagagtt
    14521 tgattttaca ttaaaagctt catttaaaga taatatagaa gcaaaacata aacaaaaact
    14581 taataaaata ataccaaaaa tacgcataaa tttcctaaaa acttatt
//
LOCUS       DARGEX010000038        14376 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.038, whole genome shotgun sequence.
ACCESSION   DARGEX010000038 DARGEX010000000
VERSION     DARGEX010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.038"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..597
                     /gene="nrfH"
                     /locus_tag="SF010_000891"
     CDS             82..597
                     /gene="nrfH"
                     /locus_tag="SF010_000891"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG8229836.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            612..2444
                     /locus_tag="SF010_000892"
     CDS             612..2444
                     /locus_tag="SF010_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG8229837.1"
                     /translation="MKKNILRLGIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2580..3134
                     /locus_tag="SF010_000893"
     CDS             2580..3134
                     /locus_tag="SF010_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229838.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQK
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3198..3287
                     /locus_tag="SF010_000894"
     tRNA            3198..3287
                     /locus_tag="SF010_000894"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3232..3234,aa:Ser,seq:gct)
     gene            complement(3360..4352)
                     /gene="ceuB"
                     /locus_tag="SF010_000895"
     CDS             complement(3360..4352)
                     /gene="ceuB"
                     /locus_tag="SF010_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG8229839.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTIKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4365..5120)
                     /locus_tag="SF010_000896"
     CDS             complement(4365..5120)
                     /locus_tag="SF010_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229840.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRVFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5117..6055)
                     /locus_tag="SF010_000897"
     CDS             complement(5117..6055)
                     /locus_tag="SF010_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG8229841.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISMVINFLGGIYFIYLVLKGNKL"
     gene            complement(6048..7016)
                     /locus_tag="SF010_000898"
     CDS             complement(6048..7016)
                     /locus_tag="SF010_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8229842.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVGIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            complement(7102..8091)
                     /locus_tag="SF010_000899"
     CDS             complement(7102..8091)
                     /locus_tag="SF010_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG8229843.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALKYEKQGDYKKAMEIYKKLALK
                     NSSVLISREQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8088..8663)
                     /locus_tag="SF010_000900"
     CDS             complement(8088..8663)
                     /locus_tag="SF010_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG8229844.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVNKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     KNELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELR"
     gene            8726..10033
                     /locus_tag="SF010_000901"
     CDS             8726..10033
                     /locus_tag="SF010_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG8229845.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            10035..10373
                     /locus_tag="SF010_000902"
     CDS             10035..10373
                     /locus_tag="SF010_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229846.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            10382..11107
                     /locus_tag="SF010_000903"
     CDS             10382..11107
                     /locus_tag="SF010_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG8229847.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVAFL"
     gene            11104..12174
                     /locus_tag="SF010_000904"
     CDS             11104..12174
                     /locus_tag="SF010_000904"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG8229848.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAIDFSKIPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            12176..13570
                     /locus_tag="SF010_000905"
     CDS             12176..13570
                     /locus_tag="SF010_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG8229849.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            13567..>14376
                     /gene="tsaD"
                     /locus_tag="SF010_000906"
     CDS             13567..>14376
                     /gene="tsaD"
                     /locus_tag="SF010_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8229850.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASA"
BASE COUNT         5125 a         2014 c         2396 g         4841 t
ORIGIN      
        1 ttaaattcat ctatgttaaa attaaaaaat ttatttctgg gaaattctgt gacattgttg
       61 tttcattgaa gattttaaga aatgataatt ttaaggagga aaattttgaa gaaaacttcg
      121 aatcttttta ctatttttct tgttttgctt tttgttttct ttgcggttgg gttttatact
      181 ttttataacg ctaagggcac atcttattta agcaatgcaa gtgaatcttg taataactgc
      241 catattatga atgaagttta taacgaatac atggcaggac cacactctca aaaagtcaaa
      301 ggcgaaccaa gagcaacttg tgtggattgt catttgccac ataattttgt agctaagtgg
      361 atagctaaag cgcaaagtgg tttaggacat gcttatgctt ttacttttaa acttgatgag
      421 ttgcctacaa atttgagtgc gactgaaaaa agcagaaaaa tggtgcaaga aaactgcata
      481 cgctgtcatg cagattttgc tcaaacagct atcaatgcta caacaaatcc acatgcagac
      541 aagtcattaa attgtgcttc ttgtcataaa gatgttggac ataaacacgg aatttaataa
      601 ggagaagatg aatgaaaaaa aatattttac gcttgggtat tgttgttttg gttttactta
      661 tagtgggagt tttatggcta aataatgata tcaatcaaaa aaaagaagat gaagcaaata
      721 aaaatgccat tgcagcaaat gctgattttt ctttgcttag tgatgatgat ccaaattttg
      781 aaaaatgggg taaggttttt ccagagcagc taaaaatgta tttaacagtt gaaaaagaag
      841 agcctaaagc tactgaattt ggtggtaatt tagcttattc aaaattaatt cgctttcctc
      901 aattaaccat actttgggca ggatatcctt ttagtcttga tttcaatgaa gaaagagggc
      961 atttttgggt tcaagtagat caaatgaaaa cagcaagaaa caacaaagat tttcttaatg
     1021 ctcacggcct tgctgctttt aaaggccagc ccgcagcttg tatgaattgt catagtggat
     1081 ggactccatg gcttataaaa aatgttgcta aaggagattt tactgctttt aactctacaa
     1141 attattggac tatgattaaa aatatcccag ccgttgatgg tatagtggaa aattcacctg
     1201 aacatgcagg tccacatggt ggtaaaagaa tgggtgtaac ttgtgcagat tgtcacaatc
     1261 caaatgatat gagtttaaga cttactcgtc cagcagctat taatgcttta gtttctagag
     1321 gatatgaaaa agatccagtg caaggcgtaa aagctacaag agaagaaatg agaactttag
     1381 tttgctctca atgccatgtt gaatactatt ttaaaccaac aggggaaaaa gtaaaagtaa
     1441 tgggtgaaac tattgtagat gatagttcta aaaaatggtg gaatggaact cagaaaaatt
     1501 atgatgagta tgaattttgg agagatggta ataaagctaa agagattgaa accgatggta
     1561 tagttttaac ttttccttgg agtgagtgga aaaaaggaca gccatttaga attgaaatgc
     1621 tagatgatta ttatgataaa gttcgtggag tatttggagc tgattttact cataaattaa
     1681 caggggcaca aattattaaa attcaacatc cagaaagcga actttatagt ggcggtgtgc
     1741 atgctgcaaa tggggtaagt tgcgtggatt gtcatatgcc ttatgttaga gaaggagcta
     1801 aaaaggttac tcaacacaat atcacttctc ctttaagaga tattaactct gcttgtaagt
     1861 cttgtcataa acaaagcgaa gattatttaa aagctcaagt gcttgacata caaaacagcg
     1921 ttgcgcatga tcaaagaact gcagagtatg caattgttag tttgattatg gatactaaaa
     1981 aactacgcga tgaactaggt aatatggaaa aattccaaag cgatggaaaa gctgatgcga
     2041 aaaaaattag cgaagaacta aaagaagttt tagaacttca tcgtaaagct caaatgagag
     2101 cggattttgt taatgctgaa aactcaactg gtttccataa tcctcgcgaa gcttcaagaa
     2161 tgttattgca agctgttgat atggcaagaa tgggacaaac taaacttgta gaaattgcag
     2221 cggcaaatgg aattaaagat tttaaaactt caaatttagg ttttgaagat attcaaaaat
     2281 ttaatccagg agagctttat tataaagtag atgttaataa tcataaagct ggagagcgtt
     2341 actatgcaga tgaaaaagat gttaatggca atcctccaaa agaactttta gagcatgata
     2401 aagagcttgc tccttataat tatcaagtga ttgataaaaa ataattctta agccctataa
     2461 tcatagggct ttttcttttc tttgttttaa aaaatataaa ctttttattt aaaattcact
     2521 tttgcttcac tttgttttgt caaaatatca caaattttga taatcaaaaa ggagttaaaa
     2581 tgatcaataa aaataaattg tttagacagg ttcatatcta tcttagtttg ttctttttgc
     2641 cttgtgcttt gctttttgct ttaacgggta tagcgtatat ttttggtatt aatcaagatg
     2701 tgggcttaaa agttgagcag tatcaattgt caaaagttat agaaagtggt aaagaaagag
     2761 aagctttaat agagtattta aaaacaaatg gtttaaaagt accatctaat acaaatataa
     2821 ttaaaagtaa agataaaggt ataacaatag gtggaactca ttatagtgct aatataactc
     2881 aaaaatctac taatgaatac aatattacct taaaaacaag atctttactt ggcgatatga
     2941 ttatgcttca taaagataag ggtgcttggt atttttctgt gcttagtgta ggctttggta
     3001 ttactttatt tatgctttat atttcagggc ttatgattac tttgtttgca aataaaaaag
     3061 atagaagtaa gcaatttgca gttcttggag taggggttgt tgtaactttg cttttggctt
     3121 atcttagcct ttgatttttc ctagcttttt aagctaggta ttatttattt ttttgtataa
     3181 tcatacttta ctttattgga cagatgggtg agtggctgaa accacacccc tgctaagggt
     3241 gcagatctta acgggtctcg agggttcaaa tccctctctg tccgccacta aaactttctt
     3301 gaaaatccca agtattttat taggtatcga agcaagagac tagcccttgc gaagttatat
     3361 tattttacag cgtttttgat ttctaaaatc atagttttta aagactctag tccatttcca
     3421 cttgctaaat accagtattc tggatcaaga tagatgatct ttttgttttg tgctgctttg
     3481 gttttagcga caagtgcatt atcgagtatg ccttgagcgc gttctttgtt gcctacaatg
     3541 atatttctat caataacaaa aatataatca ggattttttt ctagtataaa ttcagaattg
     3601 atacttttgc cgtgagtgcc tacttttata ttctcatcta ctgcgttaat ccctaaaaca
     3661 tcgtgaataa tcccaaagcg agattgagga ccaaaggctg aaattttgtt agaatttgta
     3721 agaatgataa gagctttttt atcttcatca actatacttt tggctttttc aatttcattt
     3781 ttaatatctg aaattttttc caaagcttct ttttctaaac cataaagttt tgcaacgctt
     3841 aagacattgt tttcaaaaga gcttaaaaaa tttgcattat caagacctac aaataaagtt
     3901 ggagctattt cttttaactt atcataaaat ttactttggc gtccagaaat gatgataaga
     3961 tcaggtttta aagcattaat ggcttcaaaa tcaacttgtt gtactccacc tacactaggt
     4021 ttgtttttaa attgttgtag gtattttggt aaatttttag caggaacgcc cgcgacttta
     4081 tcatttaatt ttaaagcatc aaaagtatct aaaattccaa gatctaagat cactacctta
     4141 gaaggatttt tagggatttt attttctcct agactatcct tcactaaaaa actatcaccc
     4201 tcatcgctca tactaatagg caaaactttc accgtagcag tgttggtttt tattgtagaa
     4261 cttgcgttgt tttcatttga gtttgaatta caagctgtta agattagact taaaaaaaat
     4321 gcaaaaaatg caaaaactaa agattttttc atattttctc ctttttaaaa ataaatacaa
     4381 attttcttac cattaatttg acttacgggt atatccatat cataaatttg ttttaaattt
     4441 tcttgattga tgatttcatc ttttgagcct tgttttaaaa gcttcccatc ttttaaggct
     4501 atgatttcat cagaataaat cgaagcaaaa ttaatatcat gtaatacaac agctatactt
     4561 ttgttaaagt ctttgactaa atttttcatt agttgcatga tttgtacgct atgcttcata
     4621 tcaagattgt tcaaaggttc atcaaacatt ataaattcag tatcctgagc gatgatcatg
     4681 gctataaaaa ctctttgttt ttgtccgccg cttaatgtat ctaaaaattc atttcttaag
     4741 ttgctaagtt ccatgtattc taaagcttca ttgattttga ttttatcgtt tgtattaagt
     4801 cttccttgag aatgcggaaa acgcccaaaa gcgactagtt cttcaacttt taatcttaaa
     4861 ttgatattgt tttgttgttt gagaatggaa attttttgtg ctaagatttg ctctttataa
     4921 ttttttaaat tcattccatc gatataaatt tctccactac taggttttat caaacgactt
     4981 gctagagcta aaagagtgga ttttccagcg ccattggctc ctattataga agtgattttg
     5041 cctttatgaa aatcaaggct aagatctgaa ataatgactt tattatcata aaatttggtg
     5101 atatttttta gtttaatcat aatttattac cctttaatac aagatagata aaatatatcc
     5161 cacctaagaa attaataacc atgcttatag tggcattata atcaaaaact ctagagacaa
     5221 aaaacacccc tccaagcaaa gccaaaatac taataagtat acaagcgctt agcaaaatac
     5281 tatgctttgc agttttaaat agttcataag tgatatttac caccaaaagc cctaaaaagg
     5341 ttataggacc tacaagtgcg gtgctaatag aagttaaaat agctatgata atcatcaatt
     5401 gttttgaaat tttttgataa tttatcccta aatttatcgc taaatctttg cctaaattta
     5461 aaggatctaa aaatttcata tagcgaaaaa tccatataaa acttaaaaag ctaatgatat
     5521 aagcaagaat taaaacatca aaagcaatat tatcgaaact agcaaacatt cttccttgta
     5581 ttaccatgaa ttcatcaggg tcgattaata cttcaaaaaa agagcttaaa gtgctaaaaa
     5641 gtgttccaaa aactaagcct aaaagcatga taagataaat acttctatcg ctactaaata
     5701 aaattttata aagtcctagt gaaaaaacca ccatacaaac tagagtgatt aaaaaattga
     5761 tatcgttttt ataaacactt aaattagctg caccaaaaga aaagataaga gcactttgaa
     5821 gtaacatata taaagaatct aatcctatga tggcaggggt tagaattttg ttattgcata
     5881 aagtttgaaa gattactgtt gaaacagcga tacaaatagc tactatgata atagctgcaa
     5941 tttgtaaaaa acgacttttt aaggcatact catcaaagcc atttaaaccc acaagtataa
     6001 aaatccctat cataccaagt gttaaaaagc ttaaaatcag cattttttta cgcataagct
     6061 ttccttttta gcaaaagaaa gataaagatt aaagatccta aaacacctgt agtgatactt
     6121 aaaggcattt caaaaggaaa gatgacaagt cttgaaatga tatcgcaaac aagtaaaaac
     6181 aaagctccac aaagtgctat atagataaga ttttttctaa gattatcacc tagataaaga
     6241 gctactaaat ttgggataat tagccctaaa aaagggataa ttccaacgct tacaatcact
     6301 aagctagtga taatgcctac aatcatcaag cctaaaaata atatcccatt ataagaaatt
     6361 ccaagattta aagctatatc ttcgcccatg ccaactatgg tgattttatg agctaaaaaa
     6421 taagcaagta taaaaagtgg taaagaaatg tagagcaatt cataatttcc ctgcataaca
     6481 tttgccatac tgccttgtaa ccagccttgg atattttgta tataatttaa agcataggca
     6541 aaaaaagtag ttatagcact aataatgcct ccaaacatca agcctatcaa aggtacaaaa
     6601 atcacatctt tgagtttgat ttttcttaaa atttgaataa atataaaaga acccaaaagt
     6661 gcaaatacag aagcaatgat agcttgagtg aaaaaagacg ctccagtaaa aaatattaaa
     6721 gaaataagta tgccaaattt agcacaatcc atagtccctg ctgtagttgg agaaacgaat
     6781 ttattttgcg tgagttgttg catgataagc ccacatatac taagactcat tcctgtgagt
     6841 aaaatcgcta taagtctagg aattcttgtg agggttatga tttctagttg agtggagtta
     6901 agattaagaa tatcttttac attgatactg ataactccta taaataaact tatcattcca
     6961 aagaataaaa gtaaagctat aagcactttt aaactcaata tatgcttaaa aaacaaatct
     7021 ttccttatag taataataat tatcaaaaat gaaattgtaa tgaaatttgt tttaagaaat
     7081 gataaaacta caaaggatat tttagtaaga aatcaaaaat ccagtggaaa gtctttgcaa
     7141 gtgtttgtta tagtctataa ggctttctcc atagccatta aagtattgta aataccaata
     7201 aattccgtta ttaaaaatat catatcctag atcaacttgt atagcacctt tgttattgtg
     7261 gaatttaaga ttgtttctta gcataagatt gataaaataa tcatcgccca aatacgctaa
     7321 attcacatca aaatttccca tataatgcaa gatagcagga ttatcatcat cttttttgtt
     7381 ttcaggaatt ctataccaaa ggcgtggaac aaataaaaat ttattatata aaatagcagt
     7441 agatacataa attctattcc atgagcgaga ttgtaaattc tcatctccct tgccattgct
     7501 ttcatgcaat atacctacgc gtagattgtt aaaaaattca taatctttaa gatacaaagg
     7561 aaaatctata aaaaattctg gttgatagtt ggtttctcta aaaggagaag aatgctcata
     7621 aatttgccac caagaagttt gagtataggc tatataatat ttttcatcta gtcctagtaa
     7681 attttcaaaa agtctttttt taacactaag ttggaatttc gcctcactct tattattatt
     7741 tactcctaaa gaattaaaac tataagcaaa aggtaaaaaa taattcatct tataagagct
     7801 aatgccaagg ggattaaagc tttcattttc accaagataa ttagccaaag ctaagcgaga
     7861 aaagtcttgt ttttcttctt tttttatagt gatagaattt tgcatttgtg ttgcttcgct
     7921 tgagttattt tgttctcgag aaatcaaaac agatgaattt tttaaagcga gttttttgta
     7981 aatttccata gcttttttat aatcgccttg tttttcatac tttaaagctt gttgtaaatc
     8041 actagcccat ataaaaacgc ataagcttaa aaataaagca atttttctca tcttaactcg
     8101 cttttaaatt tttcatattc ttcataaaaa ttaagattta aaaaagcatc ttcatcttca
     8161 aattctacaa atttggtttt aatctcagaa aataaaagtc ctattttttg ttcatttttt
     8221 tctaagaaat ttttacaagt ttgagctaaa gagctgtgat aaaagccaca taagggatgt
     8281 ttatgtaaag gggttttggc tatgattatt ttatagtttt gctctaaaaa aggaagcatt
     8341 tttaaaagct catttttacc tactttagga ctatctacac ttaaaacaaa aacaaattca
     8401 tttttaaaat ttgaaagtat agagtaaagc gcaagcatag gagagtaaac ttcaaattct
     8461 aaagaatctt ttatcaagct aaaatggttt tcaaatttgt cttctttcgc actcacatag
     8521 acatttttaa aaattttaga aaatttattt acttgaaatt gagttaaatt ttgattttta
     8581 agaatcaatt tgcttttatc ttgtcccata cgactagatt taccaccaca taaaatcacg
     8641 caatttagct cattaagctg cacaaatttc cttttttaat gtaattctac cacaaaattc
     8701 gccaaaatat tttataattt cttttatgaa atacacagaa cttttacaat tacaaacttt
     8761 tttttctcag tttaaaaaaa tcgattttat caagcgtatc aatgacaata ttttggaatt
     8821 aagctttgat agagaaagat ttatttttga tcttactcgt gcaatgagtg cgatttatac
     8881 agctaaattt aatgcaaaaa attataatgc accttttgat tttatgctta aaaagtattt
     8941 tagcaatgct tttataaagg aagttaaagt ccttgaaggc aatcgtattt tatgttttag
     9001 tgtaaaagct aataaggctt ataaaagcta tgagagcaaa atttattttg aatttacggg
     9061 taaaaatacc aatgttattc ttacagatga aaaagatttg atcatagagg ctttaaggca
     9121 cattgataaa agttatcgtg ttgtaaaacc taatgtgatt ttagagtctt taaagcctta
     9181 taaaatggat gaaaattttg aggaaattaa agactttgca gattattttt ctcgcaaatt
     9241 tacaagcatt tatgagagta aaatcaaaca aataaaaaat ttaaaacttg cacaagtgga
     9301 taaaaaaata caaaatttac aagaactttt ttctagttta gatgaagaaa attctttact
     9361 cttaaaagct ttagaataca gaaaaagggc tgatgtattg tttgcaaatt tgagtgtttt
     9421 aaaagattat gaaagggaat ttaagcttga tgattttgaa ggcaaagagc ttgaatttaa
     9481 gcttgaattt aatcctaagc aaagcgctaa tttatattat aaaaatgcta aaaaattaga
     9541 acaaaaagct aaaaatttaa acatacaaag acaaaattta aaagaaaagt tagattttac
     9601 cttgagtttg aaagaattat tgcttcaagc taagagtgag atagagcttg aaattttact
     9661 acctaaaaaa aatagcaaaa aaaatcaaga tcataaacaa gaagatcttg tggcaaattt
     9721 ttattttaac gagtttaaaa tttgcgtggg taaaaatgaa aaaggcaatg aatttttact
     9781 taaaaatgct aaaaaagatg atttgtggct tcatgtaagg gatattccta gcgcacatac
     9841 tttgattgta tcaaacaagc aaaaaatcag cctcgatgtg atagaatttg ctgcaaggct
     9901 ttgtgtaagc ttttctaagt taaagaaagg ttcgtattgg gtcgattata ccttaaaaaa
     9961 ttttgttaag gttcagcaaa aggcgtttgt aaattataca aattttaaaa gtattaatat
    10021 cacaaaggat taaaatgcca gttagccctt taggaaatat caattatata aatcagaata
    10081 tggcttatcc agctacacaa gcaagcaatg agcttgcaaa agaaggtttt gcagctacgc
    10141 taaatatggc tgaatttaat gaaaaagaaa aaactttaaa caagcttgag aaagtcaatg
    10201 agactcatga aatcaaagaa gagatcaaag aaaaagccga acaagaagaa aaaaagaaaa
    10261 aacacaatca agaagctaaa accagcgatg atgagaaaaa tgaagaagat gagtctaaag
    10321 atccaaattt taaagacgca caaagcattc atcgcttaga tattagtata taaggaaaaa
    10381 tatgtttaat acaactagaa ttatttcagc tcttgtgatg ataggggcta ttattattat
    10441 cgcgttgatt gatcaatttt ttatcaattt tatcgttttt gcggttttat tgtatttatc
    10501 ttttagtgaa gcaaaaaaac tttttgcttt agaaaatatt tctattatcc ctttggctat
    10561 agcttttatt ttgggaagtt tatcgcataa agctttgctt tttgggattt tagctttgtt
    10621 attagtcgtt ggatatttgg tttataaaaa ggcttcctta aaaccagctc ttatttatat
    10681 ttatcctagt ttgcctattt tagcactttg gcaagtgtat ttagatcagg gtatgtttgc
    10741 gcttttttgg cttatcatta tcgttgcagc ttgcgatagt ggggcgtatt ttatcggaaa
    10801 acttatgggt aaaactcctt tttctccaac aagtccaaat aaaaccttag aaggtgttat
    10861 aggtggtttg atttgtgcga gtgttattgg aactattttg ggagtttttg tttatagttt
    10921 ttggctttct ttactttgtt cgttttttgt agcgattttt gcagtgattg gagatttgct
    10981 tgagagttat tttaaaagag aagcaggtgt aaaagatagt ggagatctta tccctggtca
    11041 tggaggtgtg cttgatagga tcgatgcagt gatcattgct gcttttgtga tggttgcttt
    11101 tttatgatac tttttggaag cacgggcagc ataggagtaa acgctcttaa acttgctgct
    11161 ttaaaaaaca ttcgtatttc tgctttagct tgcggggata acatcgctct tttaaatgaa
    11221 caaatcgcaa ggtttaaacc caaatttgtt gccataaaag attcaaaaaa taagcattta
    11281 gttaaacacg atagagtttt tatagggcaa gaaggtttag agcaaatttt aacagaatgt
    11341 caagataagc ttttactcaa tgccattgta ggttttgcag gacttaaaag cactttaaag
    11401 gctaaagagc ttggcaaaaa catagcttta gctaacaaag aaagtcttgt agtagctggg
    11461 agttttttga aaggggctaa atttttaccc gttgatagtg agcatgcagc tttaaaattt
    11521 ttactcgaag gtaaaaaaaa tatagcaaaa ctttatatca cagcaagcgg cggagctttt
    11581 tataagtata aaatcaaaga tttaaatcaa gtcagtgtca aagatgcttt aaaacatcct
    11641 aattggaaca tgggagcaaa gatcactata gatagtgcga ctatggcaaa taagcttttt
    11701 gagattatag aggcttatca tttatatgat tttaaagaaa ttgatgcttt aatagaacca
    11761 agatctttag tgcatgcaat gtgtgaattt aaaaatggag ctagcacggc gtatttttca
    11821 aaagcagata tgaaactagc tatttcagat gctatatttg aaaaacaaga tacgcctatt
    11881 ttagaggcta ttgattttag taaaatacct gctttaaaat ttcatccaat cagcacaaaa
    11941 aaatacccta tttttaagct taaaaataca tttttaaaag agccaaattt aggtgttatc
    12001 atcaatgctg ctaatgaagt tggtgtttat aattttttag aaaataaaag tggattttta
    12061 gacattgcta aatgcatttt taaagccctt gatcattttg gagtacctaa aatttcaagc
    12121 atagaagaag tttttgagta tgattttaaa acaagagagt atttaaggag ttaaaatgaa
    12181 atttttttta acaattttat tttttataac aagcattttt gctttagagc tagactttag
    12241 cgtaggagaa aatggaaaaa gtctagatga taataataca gttttaattt ttggtggaat
    12301 tcaaggcgat gagcctggtg gatttcatgc ggcaagtttg cttttgagtg attataatat
    12361 cactaagggt aagattatag tggctccaaa tttagctttt gatagcatta tcaagcgttc
    12421 tcgtgggaat aatggggatt taaaccgtaa atttgcaagc attagcccaa aagatcctga
    12481 ttataaaacc gttcaacgca ttaaagagct tattttactt cctgaagtta gtatggtgat
    12541 caatcttcac gatggttggg gtttttataa acctacttat atcgatgcga tgcaaaatcc
    12601 taagcgttgg ggaaattcaa gtgtgattga tacaagcgaa atcaatgcaa gcaaataccc
    12661 tgatcttgaa aatatcgcca ctcaaaccgt aaatagtgtc aattcttcac ttgctgatcc
    12721 aaagcatgct tatcatctta aaaacaccaa aacccaagag cttggcgata cggaaatgct
    12781 taaagcttta acttattttg tgatttcaaa tcacaaagcc gcttttgcaa atgaagcaag
    12841 taaaaatctg cctgtaaatt taagagctta ttatcatctt ttggcaattg aaaattattt
    12901 aaaaactgca ggaattgaat ttagcagaga tttcgaactc actccacaag gggttgataa
    12961 agccataaac cgagagcttg aagtgaagct ttttaatgat agaattttac tttctttaaa
    13021 aaatccaaga aaggttatca actatgtgcc ttttccggta aataaagagt taaattataa
    13081 cacaagtaat gaacttactg ctgttatcgc agaaggaaat tctttttata tccagtatgg
    13141 caatcgtttt caaacaagat tatatcctga gtatttagaa tttagcgatg cttttaatga
    13201 ggtaactttt caagttgatg gcaatgaaac caccgttcct tttggaacca aggtgaaagt
    13261 aaaagagaat tttcttattc caaagatagc taatgtgcgc gtaaatatca taggctttga
    13321 tcactcaaaa gatgaaagtg gtattttagt tcataaaaaa aatatgcaaa cacaatattc
    13381 tttagacatg gcaggtaaaa tttatagagt ggaattttat gagttaagag gtgcaaattt
    13441 gcaacaactt ttagaggcaa atatcaatag caagttgatc aaaaacgcta aaaatttgga
    13501 tttaaatact cttaaaatgg caagatcaaa agataaattc ttaggttcta ttttagtgga
    13561 atttgaatga aaaatcttat cctagctata gaaagttctt gtgatgatag ttctatagct
    13621 atcattgata aaaatacctt agaatgtaaa tttcataaaa aaatttccca agaattagat
    13681 catagtatct atgggggagt ggtacctgaa cttgctgcaa gacttcatag cgaggctttg
    13741 ccaaagatac ttaagcaatg caaagagcat tttaaaaatc tttgtgccat agctgtgaca
    13801 aatgaacctg ggcttagcgt ttctttgctc agtggaattt ctatggcaaa aaccttagca
    13861 agtgctctaa atttaccctt aatccctata aatcatctta aaggtcatat ttatagtctt
    13921 tttttagaag aaaaaatttc tttagatatg ggaattttac ttgttagtgg tgggcacact
    13981 atggtgcttt atcttaaaga tgatgcaagc ttagagcttt tagcaagtac aaatgatgat
    14041 agctttggag aaagttttga taaagtggct aaaatgatga atttaggtta tcctggtggg
    14101 gtcatcatag aaaatttagc aaaaaacgcc aaacttaaaa atatctcttt taatatacct
    14161 ttaaagcatt ctaaagaact cgcttatagt ttttcagggc ttaaaaatgc agtgcgtttg
    14221 gaaattttaa agcatgaaaa tttaagcgat gatataaaag cagaaatagc ttatgccttt
    14281 gaaaatacag cttgtgatca tatcatggat aaattagaaa aaatttttaa tctttataaa
    14341 tttaaaaatt ttggcgttgt aggtggagct agtgca
//
LOCUS       DARGEX010000039        14256 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.039, whole genome shotgun sequence.
ACCESSION   DARGEX010000039 DARGEX010000000
VERSION     DARGEX010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14256
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.039"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..211
                     /locus_tag="SF010_000907"
     CDS             <1..211
                     /locus_tag="SF010_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG8229851.1"
                     /translation="ENLAKKRYEKYENLGFWVCEGHYHQNHQINKENIKYLNLASFAY
                     ERSFFVVEYQQEIKFREQKLRGQNV"
     gene            204..1160
                     /locus_tag="SF010_000908"
     CDS             204..1160
                     /locus_tag="SF010_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG8229852.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIIFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            1164..3473
                     /locus_tag="SF010_000909"
     CDS             1164..3473
                     /locus_tag="SF010_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8229853.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAEPEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNVAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNESNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            3478..3999
                     /locus_tag="SF010_000910"
     CDS             3478..3999
                     /locus_tag="SF010_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG8229854.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            3999..4622
                     /gene="serB"
                     /locus_tag="SF010_000911"
     CDS             3999..4622
                     /gene="serB"
                     /locus_tag="SF010_000911"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG8229855.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            4622..5599
                     /locus_tag="SF010_000912"
     CDS             4622..5599
                     /locus_tag="SF010_000912"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG8229856.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQNEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(5600..6022)
                     /locus_tag="SF010_000913"
     CDS             complement(5600..6022)
                     /locus_tag="SF010_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG8229857.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(6019..9288)
                     /gene="carB"
                     /locus_tag="SF010_000914"
     CDS             complement(6019..9288)
                     /gene="carB"
                     /locus_tag="SF010_000914"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG8229858.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAVNPTNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(9549..10298)
                     /gene="mreC"
                     /locus_tag="SF010_000915"
     CDS             complement(9549..10298)
                     /gene="mreC"
                     /locus_tag="SF010_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8229859.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(10288..11328)
                     /locus_tag="SF010_000916"
     CDS             complement(10288..11328)
                     /locus_tag="SF010_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG8229860.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(11339..12562)
                     /gene="clpX"
                     /locus_tag="SF010_000917"
     CDS             complement(11339..12562)
                     /gene="clpX"
                     /locus_tag="SF010_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG8229861.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(12555..13346)
                     /gene="lpxA"
                     /locus_tag="SF010_000918"
     CDS             complement(12555..13346)
                     /gene="lpxA"
                     /locus_tag="SF010_000918"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG8229862.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(13346..13786)
                     /gene="fabZ"
                     /locus_tag="SF010_000919"
     CDS             complement(13346..13786)
                     /gene="fabZ"
                     /locus_tag="SF010_000919"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG8229863.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(13881..>14256)
                     /locus_tag="SF010_000920"
     CDS             complement(13881..>14256)
                     /locus_tag="SF010_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diacylglucosamine hydrolase like protein"
                     /protein_id="HEG8229864.1"
                     /translation="LDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEGFYRSTKD
                     EIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPIIILENILP
                     SRYEVIAKSEIYHDNQEVLVKI"
BASE COUNT         4877 a         2528 c         2118 g         4733 t
ORIGIN      
        1 tgaaaattta gcgaaaaaaa gatatgaaaa atatgaaaat ttaggatttt gggtatgtga
       61 aggacactat catcaaaatc atcaaatcaa caaagaaaac attaaatatc ttaacttagc
      121 tagttttgca tatgagagaa gtttttttgt agtagaatat caacaagaaa tcaaatttcg
      181 agaacagaaa ttgaggggtc aaaatgtttg atgaaaatat cgtgaaaacg ggttcaaatg
      241 aaatggagct tgtcgatttc cgtatcttta agcaagggca cgataaagtc tatgaaggaa
      301 tttatggtgt aaatgtttct aaggtaaggg agattataaa aatcccaagc cttacagaac
      361 ttccaggtgt acctgattac atcgaaggta tctttgatct tcgtggagtg gttatacctg
      421 tagtcaatct tgccaaatgg atgcaaatca ctgagccaga aagcactatg ctaaaaccta
      481 gagttattat tactgaattt agtaatattc ttattggttt tatagttcac gaagcaaaaa
      541 gaattcgtag aataaactgg aaagatatag aaccagcaac tttttctaca ggatcaggtg
      601 ctttagataa aggtaaaatt acaggtgtaa cacgcattga aaatgatgaa gtgttgctaa
      661 ttttagatct tgaaagtgtt gttgaagatt taggaattta cgctccaaaa acagatatag
      721 attttggaaa aatagaaaaa tttactggaa cagcacttat acttgatgac agcatgactg
      781 ctagaaaacg cgtcaaagaa atgatgcaac agatgggctt tcaagttgtt gaagctaagg
      841 acggcgtaga gggcataaac aaattagaag aattaagcca agtttatggt gaaagtttaa
      901 acgatacttt aaaaattata gtaagcgatg tcgaaatgcc acaaatggat ggtttccact
      961 ttgctgcacg cattaaagaa gatccaagat ttaaagatat tcctataatc tttaactcat
     1021 ctttatcaaa tgaatttatg aatgagaaag gtgttcaaga agctggtgga gaaggctatc
     1081 ttgtcaaatt taacgctagc gatttcttca atgaaattgc aaaggttatt aaaaaacatc
     1141 aatctcaaga acaggggtaa aatatggaag atatgcaaga aatacttgaa gactttttgg
     1201 ttgaagcttt tgagcttgtt gagcaaatcg accatgattt agtagagctt gaatcaaatc
     1261 cagaagattt agaattatta aatagaattt tccgtgttgc acatacggtt aaaggatcat
     1321 caagcttctt aaattttgat gttttaacaa agttaactca ccacatggag gatgttttaa
     1381 acaaagcaag acatggcgag ttaaaaataa ctccagatat catggatgtg gttttagagt
     1441 ctattgatag aatgaaaact ttacttaatt ccattcgtga taatggcaac gatactgcta
     1501 ttggtatgga tatagaacca atttgcgcaa gattaacagc tatttcagag ggagagtctc
     1561 ctgttgtggc aacagattca aatgaaaaat ctactccaca agcagaacca gaagcaccaa
     1621 aacaagaaat agctactcca gaacctgaag tagatgttaa tcaattaagt gattctgaag
     1681 ttgaagctga aatagaaaga cttttaaaag ttagaaaagc tgaagatcaa gctcgtcgcg
     1741 cacaaaagaa acaaacaaca aatgtggcac ctaaaccgac taacaataca gcaaataaac
     1801 ctacggaaag tggagagaaa aaagttcctg cttcaggtag taatgctagc agtatggatc
     1861 aaaccatacg cgtggaggta aaaagattag atcacttaat gaatctaatt ggggagcttg
     1921 ttttaggcaa aaaccgtttg cttaaaattt acgatgatgt tgaagagcgt tatgaaggag
     1981 aaaaattcct tgaagaactt aatcaggttg taagtcaatt aagtattatt acaactgatg
     2041 ttcagcttgc tgtgatgaaa acaagaatgc aacctatagc aaaagttttc aataaattcc
     2101 caagagttgt tcgtgattta agtcgtgaat taggaaagca aatagaactt gaaattacag
     2161 gtgaagaaac tgaacttgat aaatctatcg tagaggaaat tggcgatcct atcatgcata
     2221 tgattagaaa ttcatgtgat catggtgttg aggatccagc aactcgtgca gcgaatggaa
     2281 aacctgaaaa aggtatagtc caacttaaag cttataatga gagcaatcac atcgttgtag
     2341 aaattacaga tgacggtaaa ggacttgatc caaatggctt aaaagcaaaa gctatagaga
     2401 aaaatttgat taccgaaaga gaagcagatc aaatgacaga caaagaagct tttgctttga
     2461 ttttcaagcc tggtttttca actgcggcta aagtaacaaa tgtttcaggt cgtggcgtag
     2521 gaatggatgt tgttaaaacc aacatcgaaa aacttaatgg ggtaattgaa attgatagtg
     2581 agttaggtaa aggaagttca tttaaactta aaattcctct taccttggca atcattcaat
     2641 ctttacttgt aggaactcaa gaggaattct atgcaattcc acttgcaagc gttcttgaaa
     2701 cagttagagt gccaattgat gatatctata ctatcgaagg taaaaatgta ttacgcttaa
     2761 gagatgaagt gctttctctt gtgagacttt cagatgtatt tggagttaaa caagtccttg
     2821 aaagcggtga tcaaacttat gtcgttgtta taggggtagc agaaagcaag cttggtatta
     2881 tagtagatac tcttgtagga caagaagaaa tagttattaa atccatgggt gattatttac
     2941 aaaatatcca aggtatagca ggagctacaa tccgtggtga tggtagggtg acattaatca
     3001 ttgatgtagg cgctatgatg gatatggcca aagaaattaa agttgatatt aaagcgcaat
     3061 tagaatcaag tgcgaaaaaa cctaaagaac aaccaagtga ttataaagtc ttaattgtag
     3121 atgattctaa aatggataga actttaatgc aaaaagcttt agaaccgcta ggagttagtt
     3181 taatcgaagc aacaaatggt gttgaagcat tgaatattat aaaatctggc gaacatgata
     3241 ttgatgcaat gcttatagat atcgaaatgc caagaatgga tggatacacc ttagctggtg
     3301 aaattagaaa gtattctaaa tatcgcaact taccattgat agcagttact tcaagaacaa
     3361 gtaaaactga ccgtttaaga ggtgttgaag tgggtatgac tgaatatatc actaaacctt
     3421 attctccaga atacttggaa aatgtggtta gaaaaaattt gaaactagga taagaatatg
     3481 agtaatgaaa aattagagca aattttgcaa aaacagcaaa ctcagatggc tggtcctgat
     3541 gtcgatcaaa gagaagatga tatcatccaa cttgttggct ttgtagttgg agatgaggaa
     3601 tatgcgattc caattcttaa tatacaagaa atcatcaaac ctatagaata tactagagtt
     3661 cctagtgtac ctgattatgt tctaggggtt tttaatatgc gtggtaatgt tatgccgctc
     3721 attgatctag ctcaacgctt tcatttagga agttctaaaa tgacacctca aacaagatat
     3781 attgttttaa gaggtgagac aaatggaact ggagttggag gaaatgctgg ttttgttata
     3841 gatagattaa ctgaagcaat taaaattcac agaaacagaa tcgatccacc acctgaaact
     3901 ttagttaaag acaaaggtat gatttatggt ataggaaaaa gagatgaaaa tatcttaact
     3961 atactcaaag tagaagcttt acttaagcgc gaattttaat gattaaactt tgtgtttttg
     4021 actttgatgc tactttaatg gatggtgaaa ccatcgatat tttagctaca gcgcatggca
     4081 agggtaatca aacaagcgaa attacccgcc atgctatgac tggagaactt gattttttcg
     4141 aaagtcttca aaaacgagta agctttttaa aaggtatgtc ttataaaaaa gttttagaat
     4201 taagtagcac acttccacta atgcgtggag cacatgaact tatccaatat ttaaaatcta
     4261 aaaatataca aattgttatt tttagcggtg gttttcatga aggcataaat cctgctatgc
     4321 aaaaacttgg aattaacctc ggttttgcaa attatctgca tcataaaaat gacattttaa
     4381 cagggctagt tggtggggaa atgatgtttt caaattcaaa aggcttaatg ctacaacgat
     4441 taaaaagctt tttaaatttg aaaacagatg aagtgatgtg tgttggcgat ggggcaaatg
     4501 atttggcaat gtttaacgaa agtggattaa agattgcatt ttgtgctaaa gaaattttac
     4561 gttctcaagc tgatatttgc atagatataa aagacttaaa agaaataata aaggtaatat
     4621 aatgaaaaat ttttctcttt ggtgtgattt tatagaaaat agttttttag ataatgaatt
     4681 tttaaattta ttatcacatg gaattaatgg cgctacttca aatcctgcta tttttaaaaa
     4741 tgctatttta aattctccaa tttataaaga taaaattctt aaattaaaag aaaaaaaaac
     4801 aaaagatatt tatgaagaat tagcaatttc tgatattcaa aaagcagctg ataaattagc
     4861 tcctcttttt tatcaaaaaa atgatggatt tataagtatt gaaatagatc caagacttca
     4921 tgataacacg actcttagtt taggcgaagc taaaagactt tatagtgcta ttagcaaaga
     4981 aaatgtaatg attaaaatac cagctacaaa agcttcttat gaagtaatgt atgaacttat
     5041 gaaaaatggt attagcgtca atgctacctt aattttttct cttgaacaaa gtcaaaaatg
     5101 ttttgaagct ttaaatgcag gtttagtcga atttagaaaa aacaatatag ccttaaaaga
     5161 acaaaatact agaacaccac aagctgttat aagtattttt gtaagtcgtt ttgatagact
     5221 tttaaatcct aaggctaagg agcaaaatcg tattggaatt ttaaatgcaa atttagctta
     5281 taacaatatc tactcaaaaa atgaacctaa tattcgcgcc ttgtttgcaa gcaccggagt
     5341 taaaggagat gatctgccaa aagactatta tatcaaagaa cttctttttg agaattctgt
     5401 taatactgct cctcttgatg caatagaggc atttaaagga aaaatgcatt ttaaaaaacc
     5461 tttaatgaat tttgaaattt atacagaact taatcaaatc atttctcaaa atgaacgaga
     5521 aaaagcttgc aatgacttat taagtgacgg cctagagcaa ttttgtattg cttttgaaga
     5581 tattttaaaa gctctttaat taacgtattt ttatcatttt attctttgaa agttttaata
     5641 tttttgatgg gatattttcg aaaaatttct catcaagtat tatatcggca acacttctag
     5701 cccattcttc atcaaattct tttccatgct tgtttgccga agatgaataa aaatagccat
     5761 ttttacttaa aaaattcgca tgtttacact ctttcacaat acgaatggcc tgattattgg
     5821 gataaataaa agttgttttt ttagaacgac gtactaaatt tttaaaagat tttggaattc
     5881 ttgctaaact ttttaactcg caaaatttcg cagaagtgat taagcaaggc tgatttttat
     5941 ctctaccttt taaagcatta atctcttcta aatttttact taaaaatcct accgtagtat
     6001 ctgtttgagc taaataaatc aagatttaag ccactcttgc aaactcttta catctaggca
     6061 agatttactc tgtatagctt taatcgattt tgcacctgct aaagctgatc gtaaatttgt
     6121 aaaataaggt attttaaaac gaataatatt ttcacgaatt tttttcgtat cgcctttaaa
     6181 actgtgacta tcgcttgtat tgataactaa gtgaatttct ccatttttca atttatcttc
     6241 aacattgggg cgtccttctg aaattttatg tacaagttcg cactcaaaac cactttctaa
     6301 aatttccttg caagttcccc ctgttgccat aagcttaaag ccaagcttta catattctgc
     6361 agcgattttt ttggtatatt ttttatcctt atcttttaag gagataaata ccacgccttg
     6421 ctctggaaga tgattaaacg atgcaatttg acttttcgca taagaatttg caaaatcctt
     6481 gcttataccc ataacttcac ccgttgaacg catttcagga cctaattcta aatcacttcc
     6541 actaagtttt gcaaatggaa atactgcttc tttcacgctc atatattttg gagttttagg
     6601 gcgtaaaatt ttagtatcaa aattaaccac tttaaaagta tcataaaatt ttaaagcttc
     6661 ttttaaattt ccttgccaca tcacacgcgt tgccactttt gctaaaggaa tacccgtagc
     6721 tttactaaca aaaggtatgg tacgactagc tctaggattt acctctatca tataaagctc
     6781 attattatgt aaagcaaatt gtatatttaa aagtcctaca actcccaaat ttaaagcaat
     6841 atctgcggtt ttttgtgcaa taaattcttg cattttttca tcgatattgc aaggcggcaa
     6901 agaacaagca ctgtcacccg aatgaattcc tgcttcttct atgtgctcca taattcctgc
     6961 aacataaaca tctttgccat cacaaatcgc atcaacatca atttctgtag cattgtctaa
     7021 aaactgatcg atcaaaacag ggcttttatc gcttacatcc acagcttctt gcatatagag
     7081 tctaagttca gcctcatcat ttaccacgcg catcgcacgc ccacctaaaa cataacttgg
     7141 tcttacaagc acaggatacc ctatatcact agccttaaga accgcttctt ctacgcttgt
     7201 tgcagtagaa ttttttggct gattgatacc tagctttgta ataaattcgg caaatttctt
     7261 tctatcttct gccatatcaa ttactcttgc gctagtacct ataatcttag ctccaaaagc
     7321 acttaaacgc ttagcaaatt tcaaaggagt ttgtccacca aaatgcacaa tcactccatc
     7381 aggtttttca cgctcaatca ccgctcttaa atgttcgaaa tcaataggct cgaaatacaa
     7441 aatatcactt gtatcatagt cagtcgaaac ggtttcagga ttacaattat acataatagt
     7501 tttaataccc atatctttaa gcgcaaaaga agcatgtacg caagcatagt caaattctat
     7561 accttgtcct atacggtttg gccccccacc tataatcatc actttttttt cttttttatc
     7621 cttagcatcg tttttacttt gagtgagttc gcttacattg atacttgaat aaagataagg
     7681 agttaaggct tcaaattcac ccgcacaagt atccacttca ctaaattctg cgatgatttt
     7741 ttgcttcatt cttgcataat aaatatcatt ttggcttaat tctaaattat ctttcaaatt
     7801 tacaagcaag gctatcattt tatctgaaaa gcccatagtt tttgcttttc tcaaaagagc
     7861 cttattgttt aaaatatcca tatcaatttg ttcttcaaaa tctacaattt ctttaatctg
     7921 tgttaaaaac caaggatcta ttttacaaag ctcataaagt tcttctacgc taaaaccttc
     7981 cctaaaagct tgagcaacat aaagtaaacg cttttcattg gcattgcgaa ttttaaaaac
     8041 aagatcattt ctatcttcaa attttaccct atcaaaacca cttaaagaac gctcaagcga
     8101 acaaagtgct ttttgtatac tttctttaaa agtgcgtcct atagccatta cctcacccac
     8161 acttttcata gctgtaccta aagttgtatt tgctcctgga aatttttcaa aggtaaagcg
     8221 aggaattttt gttacaatat aatcaatcac aggctcgaaa gatgcaggag ttcctgtaat
     8281 atcattttta atctcatcta agctaaaacc tactgccaaa agtgttgcaa cctttgctat
     8341 aggataaccc gttgctttag aagctagggc gcttgatctt gaaacccttg gattcatttc
     8401 aataactatc attctaccat ttgttggatt gacagcaaat tgcacatttg atccgcccgt
     8461 atcgacgcct atttcacgca aaatggcaaa agaggcatta cgcataactt ggtattcttt
     8521 atcagttaaa gtaagagcag gtgcaaccgt gatactatct cctgtatgca ctcccatagg
     8581 atcaagattt tctatactac acacgataat gcaattatca tttttatcgc ggataacctc
     8641 catttcatac tctttccatc caagcaaact ttcttcgata agaatttcat ggattggcga
     8701 aagtgctaag gcagtattag cgagttcttt aaattcatcc atattataaa ccacaccact
     8761 tccagcaccc cctaaagtat aagaagcacg gatcatcaaa ggaaagccga tttcatctac
     8821 agcttttaaa gcttcatcat aattatacgc gtacatagat tttgacaaat ccatgccgat
     8881 ttttttcata cattctttaa aaacttgacg atcttcgcct tttttaatcg cttcagggtt
     8941 tgcacccaaa aacttcacat cacctaaaag tccgctttca taaacttcca tagctacatt
     9001 tagagccact tgtccaccca tggttggcaa aatggcatcg attttctctt ttttaataat
     9061 acttaaaata ctttccttgg ttacaggctc tatataagta gcatcagcaa attcaggatc
     9121 agtcataata gtcgctgggt tagaattgat taaaactacg cgataccctt gttcttttaa
     9181 agtttttgct gcttgagttc ctgaataatc aaattcacaa gcttgaccta taacgatagg
     9241 accacttcct ataagtaaaa tatttttaat atctgttcgt tttggcatga attttcctaa
     9301 gagcataaat ttgggctgat tataacaaaa attagtttta taaactttga aattatcgat
     9361 ataattttaa aaaataaaca ctctgctttt aatctaggaa ataatacata aagaaattta
     9421 agatttttta taaaattctc attcaattat aaacatttat ttgataattt aacaaaattt
     9481 ttagcattaa acaaagttat aataattagc aaaaatatag aaaattttta aaaagtctaa
     9541 tccttgactt ataaattatc tactacatat aaataagcag gaatactaat cttaacataa
     9601 ggctttactt ctacactttg atacatatct tcatcattaa ctctattcac aataccgaca
     9661 ggtatatctg aaaagaaaat attatcaagt ccacttgtta aaatttcatc tccggtatta
     9721 atttttgccc attttggaat aaatttaacc acaatcctgc catcttcacc ctggattaaa
     9781 cctggagctt tggattttcc tatataaaca gaaaaaacac actgatcatc accttgtaag
     9841 agagccattg ctctaccatt tttattaata gctatacctg cagtatatcc ttgatatatt
     9901 aaaccacgat ttttaccaac tggaattttg ctccaatcta accataattt tttataatca
     9961 ttcaattgaa cgtaagaaat aactctagtt aaagaaactt gaggtaaata ttttgtagaa
    10021 ttttgatcct ctaaaatacg atttaattga tttgcaaaac tagttacctt tacagcaata
    10081 tcttctaatt ctttatttct agcttttagt tgctgaattt gatttgcttg attaaagtgt
    10141 tctgaaattt tttttcccaa ataatcttta atattataaa aattacctat aacaaaatca
    10201 ttaacacgga gaacattttg cttgataagt cctccataat aaaaagatat aaaaaccaaa
    10261 aaggctaaga caagaacata aaaaatctta ttcttcattg gttaattgtt gcaataatga
    10321 aatttcctct aaagctttac ccgttccttt tgctacagct aaaagcggtt catctgcgat
    10381 ataaactggc aaacgtacaa tttcacttaa gtatttatca aaaccacgaa tcaatgctcc
    10441 accacctgtt aaaactacac cattttctac tatatcactt gctaaatcag gcggcatcat
    10501 ttcaagaacc atttttaaag catcagcaat ttcttttaaa tactcacgca ttgcttctct
    10561 tacatcttca cttgtaagtt caatacgact taaaagtcca cttacttgat cgcgtccttt
    10621 taccaccata gaaagttctt ttggaagttg tattgctgaa cctatggtga ttttgatctc
    10681 ttcgcctgtt ctttcaccta tgataagatt gtatttttct tttacataat taactatact
    10741 catatcaagc ttatctccag ccgtacgaat agactttgaa atcacaagtc cacccaaaga
    10801 aatcactccg atctcagtag ttccaccccc tatatctact accaaatttc ctttaggttc
    10861 ttgtataggt aaacttgcac caatagctgc tgccataggc tcttcgatca aaaatacctc
    10921 tcttgcacct gcacttaaag cactttctct taccgctttt ctttctactt gagttaaacc
    10981 ataaggaaca gaaataataa ttctagggcg taaaaaactt tttctacgat gtgttttttc
    11041 tataaaatag cggatcattt tttcagtcat atcaaaatct gcaatcacgc catctttcat
    11101 aggacgaata gcttcgatat tgcctggagt ttttcccacc atatctttag cttctttacc
    11161 tacggctaaa atttttgctt tggaaccata cctttctctt tcaactgcca caacagaagg
    11221 ctcgtttatc actataccct tatcttttac caaaactagc gtattagctg ttcctaaatc
    11281 aatccccata tcactagaaa aaaatcctat aagttgatct aatatcattt ctatcctttt
    11341 aacttatttt tctttttatt aataatgcct ttgcattgtc tttaacaact tctttggtta
    11401 ttacaatatc atagttttta tactctggta actcaaacat taaatctacc atcatttctt
    11461 ctataatact tctaagcccc ctagcccctg tttttctctc caatgcaagc tgtgcgatag
    11521 ctcttagagc atcttcttca aattttaaat ttaccccatc aatagcaaaa agcttttgat
    11581 attgcttaat aatggcattt ttaggctcag ttaaaattct taccatatct tcttcattaa
    11641 gctcatttaa agatgcaatc acatgcaaac gacctataag ctcaggaatc aaaccaaaat
    11701 gcaccaaatc atcaggttca attttctcaa gtaaagcttt attttcttct tttgcatcat
    11761 caaaaaagcc cacaacttta tcgccaagtt ttctttttaa gatagtttcc aaaccatcaa
    11821 aagctccacc acaaacaaat aaaatatttg aagtgtcaat ttgtataaac tcttgatttg
    11881 gatgttttct tccccctttt ggtggaatat ttaccaaact tccttcgata atcttaagta
    11941 aagcttgttg cacaccctct ccacttacat cacgagtaat agaacgattt tcactcattc
    12001 tagcaatttt atcaatctca tcaataaaaa ctataccttt ttgagctctt tgcacatctc
    12061 catctgcagc ttgtaaaaga cgtgttaaaa tattttccac atcctcacct acatatcctg
    12121 cttcagttaa agaagttgca tcacaaattg ctataggtac atctaaaaat ttagctaaag
    12181 tttgcgccaa taaagttttt ccacttcctg ttggcccaac aagtaaaata tttgacttaa
    12241 aaagctctgt atcatcatct tgaagttcag ctttaaaaag tcttttataa tgattgtata
    12301 ctccaacact aaaaactttt ttagctctat cttgtcctat gacataacga tctaaataag
    12361 cttttaattc ttttggagtg atatctttaa attctgtatt atgactttgt ttaggttctt
    12421 taaattcttt ttcttctcca taaataatac tataagcacc ttcaacgcaa tattcacaaa
    12481 taaaagcatc atcattttca tttgctaaaa ttcttctttg tggattctcc acttcattgc
    12541 aaaaactaca ttttctaggc attattttta cccctataga caggaattcc acgctttgtt
    12601 tctaatataa aatggcacat ttttttaaca ttttcacttt cttgattttc aagcaaattt
    12661 ttagcatttt cttttaaatc tccttgtcta aataaagttt taaaagctct actaagtcta
    12721 tctacttcat ctttatcaaa acgacgacga gtgcctacta aatttaaact tctaatactt
    12781 gcacgatttc cttctgctaa acaaaacggt actatatcct gagaaagtgc acttgctcct
    12841 gctatcatac aaccctcacc tactttgaca aattgatgaa taggtgtaag cccgcctaca
    12901 accgtaaaat ctccaagctc tacatgtcct gccaaagttg cattattagc taaaataata
    12961 ttattaccca aaagacaatc atgagcaata tgacaataag ccataataaa agcattatcg
    13021 cctatacgag taaaaccatc tcctttagct gtacctgaat ttatcgttgc aaattctcta
    13081 atagttgcat ttttccctat aacaacaccg cttttttgct cttctttata agatatgtcc
    13141 tgaggaatat cgcctactat tgcataagaa aatacacgag aatgatcacc tatagttgta
    13201 tctgaaagaa ttcgagcacc ttgtttgatg acaacattat tacctatttt agcatctttg
    13261 cttacataag cataagcttc tattacaaca tcgtcaccaa gttgtgcacc ctcttcaatc
    13321 accgcacttg gatgaatttt tttcattatt tatccactat catagcttta agctcggcct
    13381 ctgcaactaa atttccatct acaaaagctt gccctttaaa aatccacata ttaccacgat
    13441 ttttaaccac gctcatttca taatcaagcc tatctccagg acgcacagga tttctaaatt
    13501 ttgctccatc tatgcctgtg aaataaacta ctttactttt tggatccact ttatcttcca
    13561 tactttcaaa agctaaaact ccacctgttt gagccatacc ttctaaaatc aaaactccag
    13621 gataaatagg atgccctgga aaatgtccca taaaaacatg atcacttata ctgatgtttt
    13681 tatatcctcg taccacttct ttaactttta attctgtaat tttatctact agtaaaaaag
    13741 gataacggtg tggtaaaatt tcttgaattt gcattacatc tatcattatt aaattaacct
    13801 tgaaaacaat taaaaatttt attatataaa aaaatcatta aaaattatat taacaaaaaa
    13861 agtttttctt aataaatttc ttaaattttt acaagcacct cttgattatc atgataaatt
    13921 tcactttttg ctatcacttc atatcttgaa ggtaaaatat tttcgaggat gataatagga
    13981 ctaagattat aagttccaaa caatttatta cgccatttaa tttctgcttg aacacttaaa
    14041 ggttttttta aaaaatcttc aaaatttttc catttgtttt taaaaaatgc attaaaacgc
    14101 caaaattcca ctaaaactat ttcatcttta gtacttctat aaaagccttc ttttaaattt
    14161 tgttttaaat tttcctcatc caaagaaaat cttgtataag cgtttttaaa atgcgaataa
    14221 aataaaatat gagatttaac gggcttttta tctaat
//
LOCUS       DARGEX010000040        14115 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.040, whole genome shotgun sequence.
ACCESSION   DARGEX010000040 DARGEX010000000
VERSION     DARGEX010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14115
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.040"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            15..719
                     /locus_tag="SF010_000921"
     CDS             15..719
                     /locus_tag="SF010_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG8229865.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            855..1583
                     /locus_tag="SF010_000922"
     CDS             855..1583
                     /locus_tag="SF010_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG8229866.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            1585..3306
                     /locus_tag="SF010_000923"
     CDS             1585..3306
                     /locus_tag="SF010_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG8229867.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            3512..4287
                     /locus_tag="SF010_000924"
                     /pseudo
     CDS             3512..4287
                     /locus_tag="SF010_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4393..5097)
                     /locus_tag="SF010_000925"
     CDS             complement(4393..5097)
                     /locus_tag="SF010_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229868.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAEEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFSIAS"
     gene            5205..5567
                     /locus_tag="SF010_000926"
     CDS             5205..5567
                     /locus_tag="SF010_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG8229869.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            5641..6213
                     /locus_tag="SF010_000927"
     CDS             5641..6213
                     /locus_tag="SF010_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG8229870.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(6218..7174)
                     /locus_tag="SF010_000928"
     CDS             complement(6218..7174)
                     /locus_tag="SF010_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229871.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(7235..7444)
                     /locus_tag="SF010_000929"
     CDS             complement(7235..7444)
                     /locus_tag="SF010_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8229872.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            7613..7840
                     /locus_tag="SF010_000930"
     CDS             7613..7840
                     /locus_tag="SF010_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HEG8229873.1"
                     /translation="MEGASGGSIFVTILLFVLYMLPAIIGLSRKHSNWLIISLLNLFF
                     GWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
     gene            7849..8481
                     /locus_tag="SF010_000931"
     CDS             7849..8481
                     /locus_tag="SF010_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEG8229874.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            8494..8910
                     /locus_tag="SF010_000932"
     CDS             8494..8910
                     /locus_tag="SF010_000932"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229875.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            9040..10617
                     /locus_tag="SF010_000933"
     CDS             9040..10617
                     /locus_tag="SF010_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8229876.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDESRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            10607..10942
                     /locus_tag="SF010_000934"
     CDS             10607..10942
                     /locus_tag="SF010_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229877.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            11017..11400
                     /locus_tag="SF010_000935"
     CDS             11017..11400
                     /locus_tag="SF010_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229878.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(11444..12028)
                     /locus_tag="SF010_000936"
     CDS             complement(11444..12028)
                     /locus_tag="SF010_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG8229879.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            12155..13381
                     /locus_tag="SF010_000937"
     CDS             12155..13381
                     /locus_tag="SF010_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229880.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQGDKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            13374..14112
                     /locus_tag="SF010_000938"
                     /pseudo
     CDS             13374..14112
                     /locus_tag="SF010_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         5020 a         1736 c         2485 g         4874 t
ORIGIN      
        1 ataaaggaag attgatgaga atatttttag ctttattttt attttttaat tcattacttg
       61 cattaagtga attagaagaa ggtttaaaac tttatgaagc aaataaattt gataaagctt
      121 atgaaatttt taaaagcctt tgtgaaaaag atatttctaa agcttgtttt tctttagctt
      181 ttatgtacga aagtgctaag ggtatgagta aggatttaaa tcaagcttat aaattttatg
      241 ataaagcttg caaattaggt ttagcaagtg cgtgttctaa tatggctttg cttttgcaaa
      301 atcaaggtta taaaaatgaa gctcttttgg cttttaataa agcttgtact ttaggagaat
      361 cgttaagttg taataatata gctttatttt atgaaaaaga aaaagatgga caaatggcct
      421 caagttttta taaaagatct tgtgatttaa aaaatgcaag agcttgttat caattagggt
      481 ctttatatga taaaggagag cttgttaaag caagtgtaaa atctgctctt gctttttatt
      541 ctaaatcttg cactttaggt tttggtgagt cttgttattt gttaggacgc tataatcaac
      601 tagaaaaaca agatttaaca aaggcgaaaa gatattttgg tatggcttgt gatcaaaaac
      661 atcaagaagc ttgtgcagct tataaagaac ttaattctaa agatatagag ctttattaaa
      721 agttctattt tcattgcttt caaagatatt cttaaataaa attaagaata acacaaaatt
      781 tatcgctttt taaagttaaa tttatattaa taggactaat ataatcttgt ttaaattatt
      841 atcaaggaga agtaatgcaa gacaatatta ttgatcgcag aagctttttt aaactagggc
      901 ttctaggtgg ttctgtagta gcagctagca ctataggtgg cggtgctgtt ttaaaggcag
      961 cagaacttac gcattcgcat caagcttcac aaggaaaatc aaataaaatt agaggtagaa
     1021 tgttttttca aactcaaact gaatttgata ccttaagtgc agcctgtgaa agaatttatc
     1081 ctaaagatga gcaaggagaa ggagctatag gtttaggcgt gccttatttt atcgataatc
     1141 agctagctag tgcttatggt tataatgata gagaatatat gcaagggcct ttcatggagg
     1201 gcaaagccga acaaggctat caaactccta tgcaacgcaa agatattttt ttagaaggcg
     1261 tgcatgctct tgaagaaaat gctcaaaagc gttataaaaa atctttttct ttgcttaaag
     1321 gtggagatca ggataaaatt ttaagcgatt ttgaaaaagg aaaaattcaa actacaggtt
     1381 ttaaatcttc ttattttttc acacttttaa gagatatgac agtagctgga gttttagctg
     1441 atccaattta tggcggaaat gataataaaa atggttggag aatgatgcaa tatccaggcg
     1501 cacaaatgag ctatgtggat aaaattgcaa gtgatgaatt ttttaacatt gaacctatgg
     1561 gtttagcaga tatggagagt taaaatggct gaagtattaa aaaaagtaga tgtagtaaca
     1621 gttggagcag gatggactgg aggtatagtg gctgcagagc ttactaaagc aggtttgaat
     1681 gtacttagtt tagaacgcgg acatatgcaa agtactgaaa attttaatta tatccatgat
     1741 gagtggagat atgggattaa ttatggtttg atgcaagatt gctcaaaaga cactgtgact
     1801 tttcgccatg atcctagtgg tttagcctta ccttatcgta aaatgggttc gtttttattg
     1861 ggtaataatg ttggcggtgc aggggtgcat tggaatggtt ggacttttag gtttatgcct
     1921 tatgactttg aaattcaaac cctaagcaaa caaagatatg gtaataaatt aggtaatgat
     1981 tataccttgc aagattgggg cgtgacttat aaggatatgg agccttatta tgatagattt
     2041 gaaaaaacct gtggggtatc aggtgaacca aatcctttag cggaaaaaat gggagctttt
     2101 agatccagtc cttatccaca agaacctctt gaaaatacta aaatgcttaa acgatttgaa
     2161 agtgcagcaa aaagttcaaa tttacacact tatcgtttgc cagcttcaaa ttctaaaggt
     2221 ggctatacaa accctgatgg tcaagattta gctccttgtc aatactgtgc gtattgtgag
     2281 cgttttggtt gtgagtatgg tgcaaaagca agtcctttaa acacagtaat tccaaaggct
     2341 atgagcacag gtaaatacac catacgcact tatagtaatg taacgcaaat tcttaaaaaa
     2401 gacggaaaag taacgggggt aaaatttgtc gatactagaa cgatgaaaga gtatatccag
     2461 cctgctgata tagttgtact tacaagttat atgtttaaca atgctaagct tttaatggta
     2521 agcaacatag gtgagcaata cgatccaaaa acaggtaaag gaactttagg tagaaattat
     2581 tgttatcaaa tgaacatggg tacaacagct ttctttgatg agcaatttaa caccttcatg
     2641 ggttcaggtg ctttaggaac tacgagtgat gattttaacg gagataattt tgatcattct
     2701 aaggaaaaat tccttcatgg agctatgatt tatagcgttc agcttggaac tcgccctata
     2761 caatcagccc cacttccagc aggagctcca acttggggtg ctgaatttaa aaaagcatta
     2821 aactataatt tcacaagagc tattaccgta gcaggacaag gtgcttcttt gcctcataag
     2881 aataattatt taagtcttga tccaacttat aaagatgctt ttggtatgcc acttttacgc
     2941 ttaacttata atttcaccga tcaagataga gctttgcata aatttatcac agataaaaca
     3001 gctgaggtag caaaaagaat gcaaggagta aaatcaatca aaaaaggtgc ttatcttaag
     3061 gattatagcg ttgtgcctta tcaatctact cataacacag gtggaacaac catgggtgca
     3121 gatagagaaa ctagtgtggt taatacttat ttacaacact gggatgcgga taatcttttt
     3181 gttgtaggag caggaaattt ccaacacaat agtggatata atccaactga tactgtggga
     3241 gctttggctt atcgctgtgc tgaaggtatt ttaaaatatc ataaaagtgg aaaaagctta
     3301 gcttgataat aacttgagag tttttgaaaa ctctcaagat tataaatttt taattttctt
     3361 ccgatatagt ataatatcaa ggaaggcaaa aatgattaat ggtataaatt cttattcgag
     3421 ctacaattat acaaaaaggc aaatggagtc tgctcttggt ggttggaatc caagattatt
     3481 ttaataaaat atcataaaaa aagggttttc tatggtaaat tttaattctc actatcctaa
     3541 tatcaattat ccaaataatg ctttaagcat taaaaaagat gaaaataatg aatatactta
     3601 tactaaaaaa gatgagccaa aaagtgaaga agatgcttat tgggaagatt ttgtgcaaaa
     3661 atactttgga gaaatgctta gtaaagaata tgcgaacaaa tacggctata atggagaccc
     3721 agatgttaaa gaagttgaaa attccttgct tgagcgaatg cgaaaagata aattaactga
     3781 agaggaatgg gaaattctta acggagcata tgagattgat aatattgaat ttattccagg
     3841 agataagatt tccagaatac gcaaaggcaa tcttctaaaa actcttacaa gtgtgggtga
     3901 attcgcaaga atatgggttg ctgaaaaaga tgaaagaaaa aacgatttat tgacgcactt
     3961 gatgttaaac cacttactca agaagagata gataggtttt taaataaaca acaaagctca
     4021 aattctaccc aagaaagcaa tgaaagtggt caaaacccag atgaaaaacc cttcaaagcc
     4081 attcaaggcg aaagcaaaaa caaagaaact tacaaagatg acaatgctaa aaacgagctt
     4141 ttaaaaaaat tattagaaaa taaatttggt aaaagtgaag aattagaact tctttttggt
     4201 atgaaattta gtgatgatag tgcaggagaa tttaataaat ttctttctca aaacacttcg
     4261 gcaaaaatta tagatataaa agcttgaaaa tgcaaaaatt taaattataa aaaagaaaaa
     4321 atgttaaata ttttaacata caaattcaag tcatcgtttt cataaggaaa ttttttattt
     4381 aaattaagaa ttttaagatg cgatgctgaa tttaatgtcg ttattttgtg agttttgttg
     4441 ataagttcta gcgacaaaat ttttaaagtc tttatcaaaa tttgaatttt tatcgttgtt
     4501 ttttgaatct ttatctgttt tttctaggct attttctgaa tttttgtcat ctttttcttt
     4561 attttcttct tctttttctt cggcttcttc ggctttaagc ttcattgctt cagctcttgc
     4621 ttcaaattcc atttttgtag catttgctgc aactttataa tcttgcgggc taggatcagc
     4681 aggagccata gctgctgctg caatttgtct tgcattggct atagtttctt ctggtgtgtt
     4741 tcctttttgc atgctgatag gaacttcacc cgctgtagca tacatttgat tatcagggcc
     4801 tcttgtataa gtaaaacttg cagcacctgc taagccgccg cccgctgctt gatgcgcagc
     4861 ttcatgagcc tttacatttc tatcgatact ttggagttcg cgaacttgag ctacttcttt
     4921 ttggcttagc tctacgccat taaccatttg ggtttgttcg ccattttttt ctttatcatc
     4981 tttattttca ctaagatttt tttcatcttt ttgagtggaa tcagattgat ttgttttatc
     5041 aaaagaaggt ttgctagagt agtaatcata agagttataa cttgaactaa tttgcattta
     5101 tcctcctttt tgttttttaa atttttagga attttaacgc attttgactt aaaaatttga
     5161 taaattttgt aaaataatca taaatacaat ttcaaaggaa tgtaatgatt tatgaaaatg
     5221 atttgattta tatagagaaa gaggaggctc aagtgccttg gcttaaaatt tttactaaag
     5281 aaatttataa agaatttagc gattgtcctt tagagttgca aaaggaactt tttgaaaaaa
     5341 ttttactttg tgaaaaggct atgatagaat tttacaaacc tgaaaaaatc aatatcgcct
     5401 cttttgcaaa ttatgtgcca agggtgcatt ttcatgttat ggcaagattt aaagaagatg
     5461 cgttttttcc agagtgtatg tggggaaaac agcaaagaga aacaataaag cttgatttgc
     5521 ctaaatttga agaatttgta aaatttttaa atagtaaaat tttttgattt ttattaatga
     5581 tttgttatgt tttatctaat aaaattttta tattgaaaat tactataaaa aaggaaaaaa
     5641 atgaaaaaag ttttattgag ttcattggtt gcggtgtctt tgttaagcac aggtttgttt
     5701 gctaaagaat atactttaga taaagcacat acagatgtag gttttaaaat caaacattta
     5761 caaattagca atgtaaaagg aaatttcaaa gattattctg cggtgattga ttttgatcct
     5821 gcgagtgctg aatttaaaaa gcttgatgta actataaaaa tcgcatctgt aaatacagaa
     5881 aatcaaacaa gagataatca cttacaacaa gatgattttt tcaaagcaaa aaaatatcct
     5941 gatatgactt ttacaatgaa aaaatatgaa aaaatcgata atgaaaaagg caaaatgaca
     6001 ggaactttaa ctatagctgg agtttctaaa gatatcgttt tagatgctga aatcggcggt
     6061 gtagctaaag gcaaagatgg aaaagaaaaa ataggatttt ctttaaatgg aaaaatcaaa
     6121 cgctctgatt ttaaatttgc gacaagtact tcaactatta ctttaagtga tgatattaat
     6181 ttaaatatcg aagttgaagc gaacgaaaaa taatttttta gtctaagagt cttgctctta
     6241 gactttgtaa atttttatcc aaattttctt cactttcttg ccaaatcaat ttaaaatccg
     6301 gtttaaaatt ttcattttct aaattaaatt ccgtgttttt caaggtggat tctaaaaaag
     6361 caagatgatt taaagcttga tttttatcat taaaaattaa aataaaatca ttttctacga
     6421 taaaaatttt tgctctaaag cgttttaaaa tttttgcaat ttgttttaaa atgagtttgg
     6481 tatagctttc tttggtatct tttagttcat taaaatgaag caaggcaatg atatagttgt
     6541 tttttccttt tgtaaagcgt gtaaggcttt tttcattggg tagctttgtt aaggtgtcaa
     6601 aaaaagctaa cctataagcg tgatttaaaa gataaaaaca aaaaaccaaa cttgcaaatt
     6661 caaaatatct tattcctgct ccttcttgga ataaaaattg aaaatacgca gtaaaaaatg
     6721 cgataagaag ataatattct ttagttttaa aggttttgat aaaaatgagt attaagccga
     6781 ctaaaaaaaa taaaaatcct aattcactca caggtttaaa aaaatctaat gcaataaaat
     6841 gaaattctaa accagcacta ttaaaagtag tatttctagg taaaatgata cttaaaatgc
     6901 ctataaaaat aagagttgta attgaagcga tatttttttt atttaaaatt aaaacatgat
     6961 gttttccaac gcaaaataga gtaaaaatca taggtaaaaa taaagctaca aataaattag
     7021 cttgaaaaaa acttgtataa aaataaggca acttagctcc taatagcact aaagtcaaaa
     7081 agaaaattct tgaattttta aagtaaaagg ataatacaag tgctgaaatt tcaaaaataa
     7141 aactcaatga tattaaaaaa tctaataaaa acatttcaaa tccttgattt taataaaagt
     7201 gataattgta tagaaaaaag cttaaaagtg gattttattt aaatttagca atctcatctt
     7261 gtatagtttg ttctatatga agcaattctt catgagtttt tttgctattt tctaaaagtt
     7321 catcaaattt aaagccaagc ataacaatac gatataaatt gggtttatat tttctccaat
     7381 tatataaagt gctaacatca atgtctagtt catatgccat atcacgcttg ctcttttttg
     7441 tcatttttta ccttaaaaat ttagccttta aaaaatttta cattaaaatt tctttattaa
     7501 aaacacttga aatattcaat cttttatata aaatatattt aatatttcaa tattaattaa
     7561 gttatagtat ggaataatag tttttataaa atttttattt aaggagaatt acatggaagg
     7621 tgcaagtggc gggtctattt ttgtaacaat attattgttt gtattataca tgttgcccgc
     7681 tattattggt ttgagcagaa agcattctaa ttggctgata atttctttgc taaatttgtt
     7741 ttttggttgg actattattg tttggcttgt ttgtttaata tggtctttta cgggaagttt
     7801 taagcaaact attattatta aagaaaaaaa tgagaaatag gagaaaaaat gacaaaattt
     7861 ttaagcattt gtagtttaat tgcgatgttg ttaagtggtt gtggaagtga ttttcctgga
     7921 caacctagcg atgtggctag agttcagcaa aacaaatatc caaatggaaa tttaaaagaa
     7981 gaaattccct ataataaaga ttcaagaata catgggttaa aaagagcttt ttatgacaat
     8041 ggtcagctaa gagctgaaga aaattataaa aatggaaaaa aagatggaat tagcagggaa
     8101 tattctagaa atgggcaatt acttgaggag gtgcatttta aagataatcg cggatatggt
     8161 gattttgcaa gctattatga gaatggaaat atgagagcaa agggaaaact acttggctat
     8221 aatgaagatg gtatgccaga atttgaaggt aattacaagg aatattatga aaatggaact
     8281 ttaatgtgtg attataattt tgataataaa ggtaaatttg atggagtaca aaagcgttat
     8341 gatgaaaatg gcgccttaga agacgaagaa aattataaaa acggacttaa aaatggagtc
     8401 tttagagaat ataaaaaagg ggagattgta agagaagaag aatataaaaa tggtatttta
     8461 gtagcaaaac ctaaaaatta gaggagttta gatatgttta aaaaagtaat tttatttttc
     8521 ttaatggggt ttgccttgct tcaggccaac tcattagaca aatgtgataa tacggcagtt
     8581 gtttcaaatc ttaaagaaaa aattcctagt gaaattttta aaaatcttta tgaattatcc
     8641 ggacttaaag cccaagggat tgattatgaa gattatgcaa aaggcctcaa agaaatagcc
     8701 aagcatgatg gaatggtaaa ttacactgat atgatcgaaa ttaattccat ttcaaatttt
     8761 gatcttaatt ttgattcttg tatggctacg attaatgctg cattaaaagg ggaacagaga
     8821 aaaggtcttt ggagtgttgt ttataaggtt tctaacataa atcaagtgaa aattacagat
     8881 ataacttata tcaatggaga tttccaataa tatttttatt aaagtaagtc aatagaatta
     8941 atttcatgac ttactaatat tttatactta attaatttca agtctttttt tgatacaatt
     9001 tcttaaaaat ttttataagt aaaaaattta aggaaaatca tggttgaagt aaaaaatctt
     9061 actatgcgtt ttgcaaatca gcttttattt gaaaatgtta atttaaaact tgttcgagga
     9121 caaagatacg gacttatcgg tgctaatggt gcgggaaaat cgactttttt aaaaattctt
     9181 tcaggagaaa ttgagtcaag tagtggtgaa atagtatttg atgaaggctt gaaaatcgca
     9241 gttttaggac aggatcaatt tgcttttgaa aactacacca tcaaagatgc agtgatgtgt
     9301 gcaaataagc gtttatatga ggccttaaaa gaaaaagaaa agctttatat gagcgaggaa
     9361 tttactgatg agatcaatga gcgtttaggt gagcttgaga taataacggc tgaagaagat
     9421 ccaaattatg attgtgaaac acgttgtgaa aaaattttaa gttctttaaa gattaaagat
     9481 ttcgatgctt taatgagcac cttacaaagt gcggataaat ttaaagtttt gttagctcaa
     9541 gttttgtttt taggtgccga tgcgcttttt ttagatgagc ctacaaataa ccttgattta
     9601 gaggcgattt cttggcttga aaatgaactt ttaagacatg aaggaacttt ggttgtcatc
     9661 tctcatgata ggcatttttt aaataaaatt tgcacaagaa ttttagatgt ggattttaaa
     9721 caaattcgtg attttgcggg aaattatgat gattggtata tggcttcaac gcttttggca
     9781 aaacaagctg agcttaaacg cgataaaacc ttaaaagaaa gagaagaatt agaaaatttc
     9841 attcgccgtt ttagtgcaaa tgcttctaag gcaaaacaag ccacaagccg tgctaaggcg
     9901 cttgaaaaac tagagcttga agagattaaa atttcaagcc gtagagatcc tagtatagta
     9961 tttagaacca atcgtgaaat aggtaatgaa gttttagaaa ttaaaggtat aggtaaggct
    10021 tatgataaac aattgttttc aaatttggag ctaaaaatag aaaaaaatga taaaatcgct
    10081 ttgattgggg caaatggtgt gggtaaaagt actttagcaa aaatcatcgc ccatgctata
    10141 agtccagata gtggatctat acatcttggg gcaactatag aacttggata ttttcctcaa
    10201 gatacaagta atttaatttg tgaaaatttg aaactttatg aatggctgat gagtgaaaaa
    10261 tttaaagatc tagatgaaag ccgcaagtgt ttaggtagaa tgctttttag tggcagcgat
    10321 caagaaaaaa tggcagcaag tttaagtggg ggtgaaaaac atcgtttaat gctttctcgt
    10381 ttaatgctag agcgtccgaa tttcttgctt ttagacgaac ctgataacca tttagatctt
    10441 gaaagtatta ttgcattagg tgaagctttg tataatttca aaggtgtagt gctttgtatc
    10501 agccacgata gggagttagt ttctgctttt gctaatagaa tttggcattt agaaaatggt
    10561 aagcttacag attttcgtgg aacttatcaa gaatttttag gagaaaatga tggctaaatt
    10621 tagaattcaa tacagcgcag gttttgggca ttatacacaa aatcacaagg gttttgggcc
    10681 tacgatttat atagaagaag tcgtagagtt tgataatggc aaggattatt ttgactatat
    10741 agatttttat aaaacttatt caaagagcga tgatacttat tttcatatca gttttttaga
    10801 agatagacct ctaagcgata aagaaatcac cattcgtaat gaataccgca aaatgcgtga
    10861 tgaaaactgt aaaaaagcca aggaagaatt tatagccaat aatgagcttg atgtggagca
    10921 tttgcctact caccatgatt aaaaaacatt gatttttaca taaaaaggaa cgctttttgc
    10981 ttgtatagtt tttgcatatt ttgaaaggag aaaactatgc aggtaaatta tagaacgatt
    11041 agctcgtatg aatacgatgc tattagtggt cagtataaac aggtggataa acagattgaa
    11101 gattattctt catctggaga ttctgatttt atggatatgt taaataaggc ggatgagaag
    11161 tcaagcggag atgctttaaa ttctagcagc agttttcaaa gtaatgcgca aaactcaaat
    11221 tcaaatttaa gtaattatgc tcaaatgtca aatgtttacg cttatcgttt tagacaaaat
    11281 gaaggcgagt tgtctatgag agctcaaagt gctagcgttc acaatgatct tgcgcaacaa
    11341 ggtgcaaatg aacaaagtaa gaataatact ttgttaaatg atttattgaa cgcaatttaa
    11401 tcaaaagctc cattttggag cttttgtatt tacttgcaag aatttataat ttctctattt
    11461 caaaaggtgc aaaattttta caaaaaattt caaattcttg ctcctctttt tcatttaatt
    11521 tgatatgtaa tatagctttg caatccttaa aatcttttgt gaaattaaaa gaataagttt
    11581 ttaaaaaatg ttcaaaacga tttaaatttt ttaaatcaat agcaatggtt atattttttt
    11641 tcaattcaaa tgaaagtaaa gaagaattat tgatcacggc atttgccgca tcgctatagg
    11701 ctcttacaag tccccctgta ccaagtttta taccaccaaa atatcttaca gtgattaaag
    11761 ccgcattgat aagatcatag ccccttagaa catttaaagt tggcattcca gaagttcctt
    11821 taggctctcc atcatcgctt ttatcttcta caatttgatt aaaatcattt aaaacacgat
    11881 aagcatagac aaaatgaaca gcttttggat gttctttttt tagcgtttct attaaaaatt
    11941 taaaatcttt aaaagggcaa agaaaagata agaaaataga ttttttaata tcgatttgtg
    12001 tttgaaaaat ttgatcaata gtttgcattt ttgccttttt tgtttaaaat tatacttata
    12061 aaaactaaaa tcaatttgat gttaattttt aagatatttg atatttatat gatttgcatt
    12121 gatattttaa gtttaatttt gtaaaatttt cattatggaa aaaatcaaaa attataaact
    12181 tatcatcatt ttacttagtc ttgatttgtt ggctttgctt tatggaattt caacactgag
    12241 tattagtgct gatgaagctg atatttattt tggtgagcag ggtaaatcac ttattttttc
    12301 ccatagtttg ctttattata tatctcattt tggaactttt atttttgggc aaaatgattt
    12361 tggtttaagg cttccttttt tattttttca ttttttaagt tgtttgcttt tgtatttgct
    12421 agctttaaaa tatactaaaa ctaaaattga tgcttttttt tctttattgt tatttgtttt
    12481 attgccgggt actgttgcaa gtgctttact ggttaatgcc gcatctttgg tgattttttt
    12541 aacccttgct atattatgtg cttacgaata tgaaaaaaaa tggctttttt atatattatt
    12601 gattatagta ttatttgttg ataaatcttt taatatttta tttttaactt ttttcttttt
    12661 tgggatttat aaaagaaatg ctattttatt taccttatct cttgttttgt ttggagcgag
    12721 tatcagtttt tatggttttg atacaggtgg tcgtccaaga ggttattttt tagatacctt
    12781 aggaattttt gctgcatgtt tttctccttt ggtttttgtg tatttttttt atactattta
    12841 tcgtttgact tttcaaaaat ataaaaattt attatggttt ttaatgagcg taacatttgt
    12901 attttgtttg ttgctttctt taagacaaaa acttttttta gatgattttt tgcctttttg
    12961 tgttatttgc actcctttgc ttataaaaac tttaatgcaa agttataggg tgagattacc
    13021 agtttttcga ttaaggtata aaatctttat agaatgttct ataatttttt tgatattttg
    13081 ttacttttta atcgtcgcta atcaattatt gtattatttt ataaacaatc caaatcgtca
    13141 ttttgccaat aattatcatt ttgctaaaga attggcacta gaattaaaaa aacaagatgt
    13201 tttagaactt gcaacagccc caagtttgca aaaaagattg cgattttatg gaataaaaaa
    13261 tagcaataag ttttatttaa aagctttaaa acaaggcgat aagcatgata tggacaaaaa
    13321 aattgttaaa gtaaaacttg gaaaatatga aaaagtatat cagattttaa actatgatta
    13381 aagctttcag tttgttggaa tttgtgttta taattctcat tttaggtata gtttttaatt
    13441 taggcagtct ttacttaaaa aaaagacaat ctactagaag gtgcaataca aattcttaat
    13501 gatatccaat atacccaaag tttagccatg atgcaagaag gcataagagt tgatgagttg
    13561 gctatcgcaa aaagagagtg gtttaaaagt aaatggcaga tttattttat aaaatcagct
    13621 gccacaggtt atgatcaaac atatactatt ttcttggata aaaatggcga tggaaatgct
    13681 aatttaggta aaactgaaat caatatagat agagaaattg ctgttgatgt aatcaatcat
    13741 aacaaattaa tgaattcagg tcaaagtgga gttattagta aagatgatga aaaaactaca
    13801 caaagattta atcttacaaa aagattcgga atagaaaagg ttgaattcaa aggatcttgt
    13861 tcaggattta ctagattagt atttgatgaa atgggcagag tgtattctcc gttaaaaaat
    13921 gccaattatg catatgaaaa aactttagca aagaataatt cagattgcat tatacgtttg
    13981 ttatcaaaaa agcatgctct ttgtatcgtt atagatacgc ttagcggtta tgcttatatt
    14041 ccagatttta aaacacttaa aagtcaattt gttaatataa aaaataaaaa ttacgagtgc
    14101 tctaaaatat agccc
//
LOCUS       DARGEX010000041        13654 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.041, whole genome shotgun sequence.
ACCESSION   DARGEX010000041 DARGEX010000000
VERSION     DARGEX010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13654
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.041"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            64..501
                     /gene="rpiB"
                     /locus_tag="SF010_000939"
     CDS             64..501
                     /gene="rpiB"
                     /locus_tag="SF010_000939"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG8229881.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            501..833
                     /locus_tag="SF010_000940"
     CDS             501..833
                     /locus_tag="SF010_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229882.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            830..1378
                     /gene="apt"
                     /locus_tag="SF010_000941"
     CDS             830..1378
                     /gene="apt"
                     /locus_tag="SF010_000941"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG8229883.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFAPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            1397..1993
                     /locus_tag="SF010_000942"
     CDS             1397..1993
                     /locus_tag="SF010_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8229884.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            1990..3441
                     /locus_tag="SF010_000943"
     CDS             1990..3441
                     /locus_tag="SF010_000943"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG8229885.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYDDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPYLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            3438..4541
                     /gene="ychF"
                     /locus_tag="SF010_000944"
     CDS             3438..4541
                     /gene="ychF"
                     /locus_tag="SF010_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG8229886.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(4563..5945)
                     /gene="argH"
                     /locus_tag="SF010_000945"
     CDS             complement(4563..5945)
                     /gene="argH"
                     /locus_tag="SF010_000945"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG8229887.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(5955..7529)
                     /gene="pckA"
                     /locus_tag="SF010_000946"
     CDS             complement(5955..7529)
                     /gene="pckA"
                     /locus_tag="SF010_000946"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG8229888.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            complement(7542..9341)
                     /locus_tag="SF010_000947"
     CDS             complement(7542..9341)
                     /locus_tag="SF010_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG8229889.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            complement(9373..10713)
                     /locus_tag="SF010_000948"
     CDS             complement(9373..10713)
                     /locus_tag="SF010_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8229890.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNVITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            complement(10726..12060)
                     /locus_tag="SF010_000949"
     CDS             complement(10726..12060)
                     /locus_tag="SF010_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8229891.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            12293..12631
                     /locus_tag="SF010_000950"
     CDS             12293..12631
                     /locus_tag="SF010_000950"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG8229892.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            12666..12751
                     /locus_tag="SF010_000951"
     tRNA            12666..12751
                     /locus_tag="SF010_000951"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12700..12702,aa:Leu,seq:gag)
     gene            12948..>13654
                     /locus_tag="SF010_000952"
     CDS             12948..>13654
                     /locus_tag="SF010_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8229893.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLF"
BASE COUNT         4944 a         2297 c         1941 g         4472 t
ORIGIN      
        1 ttttatgatt taatatgata agattaggtt tttatcttat tttatatagt aattaggaag
       61 ccaatgctta gggaaaaaat ttatattgct agtgatcatg ctggttttga attaaaagaa
      121 aaaatttgcg tatttttaaa agaaaaaaat ataattttta acgatttagg aacaaacact
      181 tgcgcaagct gcgattatcc tgattatgca catttacttg ccgaaaaaat agacgaacga
      241 agctttggca ttcttatttg tggaagtgga attggaattt ctattgcagc aaatcgtcat
      301 aaaaacattc gttgtgcatt atgtcatgaa agcttaagtg cagaacttgc aagaaggcat
      361 aatgatgcca atgttttggc attaggcgga agattaatcg gggttgaatt agctatagat
      421 attatagaaa aattcattca aactcctttt gaagaaggga gacatatgca aagaattcaa
      481 aaaattgagg taaaaatata atgtttacaa actggcttgt tttaactata ttgatttgtg
      541 caactatcta tcttattgta atgttgtttt actataaaac tctacttaat aaagaaaaaa
      601 catcaaaaga ttttatcaaa aacaatcttg atgatactga gattgtcatt agaaaactac
      661 aaattcaact tcaaagaagt cttggaaata tagatatact cacagaagaa cttaataaaa
      721 tcaaagcaga ccttacatct ttaagaacca gaaattctca atatcgcttg gaaaatgaca
      781 aactaagaca aagaattaaa gaattagaag caaaaatcga ggcattatta tgataaaact
      841 aacacaagaa gaaaaaaaat atctgcttga tagcattagg attattcctg attttccaaa
      901 aaaaggaatt atttttagag atatcaccac tctactaaat aacaaagaag ctttaaattt
      961 tctacttaga catttaaaag aacgctacaa agattacaat ctagacttca tagcaggaac
     1021 agaaagcaga ggatttatct ttgcatctat gatttgtgca aaacttaatc ttccttttgc
     1081 acctattaga aaacctggaa aactcccttt tgaaaccttt agctgcgaat acgatcttga
     1141 atatggcagc gataaagtag aacttcataa agatgcattt aaaaatattc aaaatgcaag
     1201 agttttactt gtagatgatt taatagcaac tggcggaaca gctatagctt catatgaact
     1261 cattcaaaaa gctggagcta aatgtgttga agcttgtttt ttaatgaatc ttaaagattt
     1321 aaatggagca aataaacttg aaaaacttac ttcagtttat agtgttttag aaatttaaaa
     1381 ctatagaaag gtacaaatgg aagaattttt aaaaaattta ctttaccaat acaaagatct
     1441 agcttatatt attatttttt tatggtgcat tttagaagga gagttagctt taattttagc
     1501 aggtattttt gctcatcaag gacatgtaaa tttaggtttt gttatattta tagcaggact
     1561 tggtggtttt gtaggtgatc aaatttattt ctatatagga agatataata aacgctacat
     1621 acaaaaaaaa ttaaaaactc aaaggcgtaa atttgcagta gcacacctac ttttacaacg
     1681 ttttggttgg cctattattt ttatacaacg ctatatgtat ggctttagaa ccattatacc
     1741 tatgagtata ggaatcacgc gttatagtgc aaaaaaattt gctattatca atctttttag
     1801 tgcttgggtt tgggcatcaa tcactatact tctagcttgg tattttggag aacaaatttg
     1861 gaagatggtg acttgggctg aagaacattg gtattatgca gccattatta ttatagcttt
     1921 tttatccctt ttattatttg gttttaaaca aatggaaaaa gctatactta aagataaaag
     1981 gaaaaaatca tgaaatttga attaaacgat aaaaaactag atgctataaa agcagacttt
     2041 gaacttgttt ttatacagga taaaaattta aaaattttta acaaagaaaa agattttttt
     2101 aaacttaata attacaaagg cgaaggtgca ttattagact taaacaataa aaagctttat
     2161 ttagagctta aaagtcttgc ttatgatgat ataagattaa gtctttgcac agcatataaa
     2221 actcttgaga aacttaatat taaaagcgta aaacttccta gcataatagg agattgtgta
     2281 gttagaagtt ttgcatcttt agttgaaggc gtactttttg gagcttataa atttgacaaa
     2341 tataaaagcg agaaaaaaac aagtactttg gaaaaattta ttatttcaag cgaagaatta
     2401 aatggtaaga aatttaataa agatgaagct aagataggtt tagagcgtgg agaaatttta
     2461 gctaatgcta caaattttac taaaaatata gtcaatgaaa ttcctgaaat ttacacccct
     2521 ttaaaaatgg cagaagatgc gcaaaattta gctaaagaaa ataaaaacat tatttgtaaa
     2581 atttatgatg aaaaattctt agccaaagaa aaaatgaatg cctttttagc ggtaaatcgc
     2641 gcctcgatac acccaccacg cctcattcat ctaagctata aagccaaaaa tgcaaaaaaa
     2701 cgtgttgtat ttgttggaaa aggcttaact tacgatagcg gtggattaag cttaaaacca
     2761 gctgatttta tgcttacaat gaaagctgat aaaagcggtg cagcagcagt aatgggaatc
     2821 ataaaagccg tagctgaact tgctttagat ttagaagtgc attgcatttt gggcgcaact
     2881 gaaaatatga taggcggcaa tgcttataag cctgatgatg tgttaatcag tcgtgaaggt
     2941 gtaagcatag aggtaagaaa tacagatgca gaaggacgct tggttttagc tgattgtctt
     3001 tcttttgcac aggatttaaa acctgattta cttatcgata tggcaactct tactggagct
     3061 tgtgttgtag gacttggaga atttacaagt gctattatgg gaaataatga ggaattgcaa
     3121 aatgattttt atctaagctc taaaaaaagc ggagaatata ccacaatctt acatttcaac
     3181 ccttacttaa gagaacttat aaaatcaaat attgccgatg ttagtaatac tgcctctagt
     3241 cgctacggag gtgcaattac cgcagggtta tttttagata aatttattcg taaagaatat
     3301 aaagataaat ggctacatct tgacatagca ggacctgctt atacagaaaa atcttgggga
     3361 tattctagtt ttggcgcagg tggagctgga gttagaatgt gtgttaatta tttaattcaa
     3421 attttaagga aagctaaatg agtttaagcg taggtatagt aggacttcca aatgttggca
     3481 aatcaacaac ttttaatgct ttaactaaag cacaaaatgc ccaaagtgca aactatcctt
     3541 tctgcaccat agagcctaat aaagccatgg ttgaagttcc tgatttaaga cttaatgaac
     3601 ttgctaaaat agtaaaacct gaaagaatta tgcattcttt aatagaattt gtagatatcg
     3661 ctggacttgt taaaggcgca agtaaaggcg aaggcttggg aaataaattt ctttcaaata
     3721 tacgtgaaac tgaggttatt ttgcatatag tacgttgttt tgatgaagaa aatattaccc
     3781 atgttgaagg tggagttgat cctttacgtg atgtagaaat tatcaataca gagcttattt
     3841 tagcagatat tgagcaactg agtaaaaaaa tagaaaaact caccaaagaa gccaaagcca
     3901 atcaaaaggg cgccaaagaa agtctcgaac ttgcaaattc cttacttgat catttaaaca
     3961 aaggcttagc tgcaagttct tatcctgaaa aggaaagtga aatttatcaa gccctaatca
     4021 aggaattaag actgctttct gctaaagagg tgatttatgg tgcaaatgtt gatgaaaatg
     4081 gtattagtga agataatgat tatgtaaaag ctttaaaaga atatgctaaa aaaaatgatc
     4141 atgaagttat caagctttgt gcaaaaatcg aagaagaatt agtaggatta agcgatgaag
     4201 aaagtcatga atttttaagc tctctaggag ttaacgaaag cggtcttgat caaatcatac
     4261 gcactgcttt tgctaagctt ggactgatca gttattttac cgctggtgta gttgaagtgc
     4321 gttcttggac aatcaaaaaa ggctggaaag caccaaaagc agcaagcgtg attcataatg
     4381 actttgaaaa aggctttata aaagctgaag ttatttccta tgaagactat atccaataca
     4441 aaggcgaaaa tggcgccaaa gaagcaggaa agctacgcct tgaaggaaaa gactatatcg
     4501 ttttagacgg cgatgtaatg cactttagat tcaatgttta ggcaaaatag cctaaacaat
     4561 atttataaat tttgaataaa accttccaaa atttgaattt gcttttctac gcttgcaata
     4621 gaacttgagc cttcactttg cttagaattt aaagaaaatt caaaatttaa aagttccata
     4681 gctttttcat caaatacagg atctattttt gaaagatctt taatttcact tatatcaata
     4741 ccttgtgctt cagcttgtgc aacaacattt cccactataa aatgtgcttt tctaaaagga
     4801 atattttttt cacgcaccaa ataatctgcc aaatcggtag ccaataaatg acctttttta
     4861 caagcattaa gcatattttc tttattaatt tgtatttctt ttagcattgc atttaagatg
     4921 attaagctat ctttagcggt ttttacacta tcaaaaatcc cttctttatc ttcttgcata
     4981 tctttattat aggctaaagg taaagctttc attatagtta aaagagaaat caaatttcca
     5041 taaacacgcc ctgtttttcc acgtataagc tcacaaacat caggattttt tttctgaggc
     5101 ataatagaac ttcctgttga aaagctatca cttatagtta taaaagaaaa ctccgaactt
     5161 gaaaataaga tcatttcttc gcaaagtctt gatgtgtgtg taaaaataac tgctatatca
     5221 taaagcaaat caagagcaaa atccctatca ctcactccat ccatagcatt tagcataata
     5281 tctttaaatc ctaaaatttc agcactcaac tcacgattgg ttctatagct tgttcctgca
     5341 catgcacaag atccaagtgg cgaaaagtct gcgagttcta ggctattttg caaacgctta
     5401 atatctcgca ttaacataaa agcataagct aaaatataaa aagaaaaact cacaggctga
     5461 gcgtgctgta aatgtgtaaa acttggcata atagtttttt tatgcacttt agcatgttcg
     5521 agcatggttt gaatcaattc ttttaaaagc tttataagtt caatatgaga ttttttgaca
     5581 aaaagtttaa aatcagtagc cacttgatca tttctacttc ttgcagtatg aagtcttcca
     5641 ccaatttcac tacctataat ctcgcttaaa cgcttttcta cggccatatg aatatcttca
     5701 tctttaatat caaaaataaa tttaccttgc tctatttcac ttctaacctg ctctaaacct
     5761 tttataatag catctaattc ttcttttttt aaaataccac aactttcaag cattgtagcg
     5821 tgtgctatag aaccttgtat atcttcattg aacaaagttt tatctacatt taaacttgca
     5881 ttaaattctt ttaaaagctc atcacttgca tcactaaaac gtcctgacca catttcattt
     5941 ttcatttaaa tgccttaaat ttttggtcca aatttgctaa attcaatgcc ttctttgaca
     6001 tcttcataac gtttaaaatt ttgtataaac atatgtgcta atttatctct tgttgcaata
     6061 taagcatttt tatctaacca agtatttata ggatttaaaa gtacactttc tacaccttct
     6121 aaagcttttg gaatagctaa atcaaacact tcaaaatttt caaattcgca ttttgtaata
     6181 cttccatcta gaatagcatt aatgcaagcc ctagtagcct taatgctcat tcttttaccc
     6241 acaccgtagc ttccgccact ccaacccgta ttaacaagat aaacattaac ttcatgtttt
     6301 tcaatctttt caccaagcaa tctcgcataa accgttggat gtaaaggcat aaaaggttct
     6361 ccaaaacaag ctgaaaaagt tgcttgaggc tctgttatac cgcgctcagt tccagctact
     6421 tttgctgtat agccacttaa aaaataatac atagcctgct ctttgcttag tttgcttacc
     6481 gggggtaaaa ttccaaaagc atctgcactt aaaaatataa tattttttgg atgccctgct
     6541 tttagactag gctcatgatt ttcaatatgc tctataggat aagaaactct cgtgttttct
     6601 gtttttgagg catcagcata atcaacactc ttatcagctc ttaaaactac attttctaaa
     6661 agtgcatttc ttttaatggc tccataaatt tcaggctcat attcaggatc aagattgatt
     6721 gtttttgcat agcaaccgcc ctcaaaatta aacacacctt catcatccca gccatgctca
     6781 tcatcaccta tgagtcttct ttttggatcg gttgaaagcg tagtttttcc tgtaccgcta
     6841 agtccaaaga aaagtgccac atcgtctttt tctccgacat ttgcactaca atgcatagaa
     6901 agtttatttt ctagtggcaa ccaataattc atcatagaaa aaataccttt tttcatttct
     6961 ccaccatacc aagttccacc aataaccgct atattttctt caacattaaa gatcacaaaa
     7021 acctctgaat ttaaaccatc ttgtttgtaa tcttcattga tgcatttgca agcattataa
     7081 acaataaaat ctgctttaaa attctcaagt tcctcttgac ttgggcgaat aaacatattt
     7141 ttaacaaaat gcgcttgcca tgcaatttca gtaacaaatc ttactgcttt gcgactttgc
     7201 aaagaagcac cgcaaaaaac atcttgaaca taaattttct ttccgcttaa ttcttgcttt
     7261 gctttagtta aaagtttatc aaataattct tttgtaatag gctgatttac ctttccccaa
     7321 gctatatatt tactagatgg atcttgtttt acaaaatatt tatctttagg acttctacct
     7381 gtaaaaatcc ctgtatctac acaaaaagta tcattatccg tgcttaaacc ttcattattt
     7441 gctttttcat gagcatttaa ttcatcataa cttaaattat gaaaaatttc ctttatatta
     7501 tccaaaccta acttatcaaa ttttttcatt tttccctcac tttaattctt gtaaatagct
     7561 aatacttcgc cttcattaac agtatcacct attttaatac aaagctctaa aataattcca
     7621 tcttttgggg cattaacctc aatctccatc ttcattgctt ctaaaaccat gatagcttga
     7681 cctgatttta cttcctcgcc ttcgttaaca taaattttaa agacattacc tgaaatacct
     7741 gctaaaattt cattttcagc atcgacagaa cttgttgaat ttgaagaaat aatattttta
     7801 ttttcttcta ctttttttac actcttaaca ttaacatctt tatcaaaacc ataactcact
     7861 tccacatgat atttattacc atttacagct acagtaaatt tgttttcatc tacactcata
     7921 ggctttggca tgctagctaa tttgcgtata tttacctttg cctctccttt taaaaatgct
     7981 ataccttttt ctttacaagc tgctgcaata aatatatttt cttcactcgt ttctataccc
     8041 tctttttcaa gcaaggtttt agtataagct atgcttttac tctcatcttt atcggctata
     8101 ttaatagcaa gctctgtagt gggttctaaa ttaagttgtt ttgaagcaag ttcaacaatg
     8161 tttgcatcgg gtgtaactgg agtttttcca aaataaccaa gcaccatttt tccataacct
     8221 tctgcgattt ttttccaagg cccaaacata acattattaa atgcttgttg aaaataaaat
     8281 tgagaaactg gagtaaccga agtaccaaat ccaccttttt ccacaacttc tctcatagca
     8341 tgaatgacct gtggaaattt atctaaaata ttattatccc tcatcatttg tgtatttgct
     8401 gttaaagctc ctcctggcat aggagaaaaa ggaataagtg gatttaccat agtagcttca
     8461 ggtggtaaaa aatactcttt taaacaatct tttaaaactt cttcgtatct taaaattttt
     8521 tcttcttcaa gtccacctaa atcataatct ttgcctttta aagcatgcat catggttaaa
     8581 atatcaggct gagaagttcc accacttaca ggagctgcag ccaaatcaat accatcaacc
     8641 cctgcttcaa gcgctgcaag atagcaagct atactcaccc ctgcggtttc atgcgtatga
     8701 agtctaatat gtgtatcttg aggtaaaatt tttctagcca ttttaatggt tttataaatt
     8761 ttatttggat tagaagttcc acttgcatct ttgaaacaaa tactatgaaa aggaatttct
     8821 gctgttaaaa tttcttttaa aattttttca taaaaaggca catcatgagc acctttgcaa
     8881 tttgacggta aatccattaa agtaatagta atttcatgct ttaacccatg ttttactata
     8941 cattcaccac taaattttaa attatttaca tcattaaggg catcaaaatt tcttatcgtt
     9001 gtagtaccgt gttttgcaaa aagttttgca tgcaaatcaa taagttcact atttccagta
     9061 tctaaagtaa cggtattgac tcctcttgct aaagtttgaa gattagcatc ttttcctaca
     9121 atagccctaa atctatccat catggtaaaa gcatcttcat taagataaaa atacaagctt
     9181 tgaaatctag caccaccacc aaattcaaaa tgagtaatac ccgcttcttt tgctgcttct
     9241 actgcaggaa aaaaatcatc cattaaaacc ctagctccat aaacagactg aaaaccgtcc
     9301 ctaaagcttg tatccattac atcgatgaat tttttagcca ttatttttcc ttaaaaaaat
     9361 attttttcat tattatacaa aaatttgata acacattacc aaaattattg ctataggcga
     9421 tataaaacga ataaaaaaca accaaattaa gaaaattttt cgacttataa atttagaaaa
     9481 aattttataa atttgttttt tattcataaa aaaacctaca aatatagagc atactatagc
     9541 accaagtgga agtaaaaaat ttgaagttaa tttatctaat aaagtaaaaa aatctttgcc
     9601 aaaaaaacta aacatagaaa aaaaatttaa atttaatgac aagatacaac aaattccaaa
     9661 aacaaaaaca aataaaccta ttaaaaatag agctttaaca cgagaaattt gatagttatt
     9721 aatcatataa aaagttaaag gctctatcat tgaaatagct gaagtaatac cagcaaaaaa
     9781 aagtgctaag aaaaaacaaa atgcaaaaat atagcctaaa gctccaagtt gattaaacaa
     9841 actcatcaag gatacaaaaa caattcctgc tccttgagta tgcggatcgg ctccaaattc
     9901 aaagataaaa gtaaaaacaa taagtcccat aataaaagaa atcaataaat taatcaaaac
     9961 aatatacact gaacttttta taaaatttgt ttttttatcc aaggccgatg aatatgtaac
    10021 tatacaacct attcccaagc ataaggtaaa aaatgcaagc cctaaagctt cggcaataga
    10081 gctgaattta aaatgtgaaa aatcgggata aaataaataa gaaaaagcat ttgcaaaacc
    10141 ttgcttaaat cccatgcaat aaaacaacat aaaaacaagc attaaaaata agctaggcat
    10201 tataacaacg tttaattttt caatcccttt gattaaacct ttagatacta tcaataaagt
    10261 aagaaaaaaa gataaagtga agaaaaaaac agaacttgtc aaatttgtag taattacatt
    10321 ctgaaaatta cttgctgctt catctaaagt tttaggaaga taataaagac tcactacagt
    10381 atattttaaa acccatccca tgataactag ataaaaagag aggataaaaa taccacctaa
    10441 cataaaaacg ccgccatatc gccatctatt gccatatttt atggcaagat ttgaataagc
    10501 atttgcaaga tcacttttac ttaaacgtcc catagccact tcagccaaaa aaatactaaa
    10561 tcctatagtt aaagtaaaaa acaaatataa aagcacaaaa acaaaaccac cattttctgc
    10621 gcttaaagtt ggaaatttcc aagcattacc taaaccaacg gctccaccag caacagccaa
    10681 tacaaaaccg atttttgaaa aatatgttct cattattttt caaactcact ttaaaaaagc
    10741 ggctatcata actataacaa cagccaaagg ggaaataaat ctcaaaaaca cataccaaag
    10801 ttcaaaaaat atacccctca tataaggttt aaataaaatt tttaaagctt cttttttcat
    10861 cacaaatccc acaaaaatag ctgccaaaat tccacctaaa ggcataataa ccttgcttga
    10921 aacactatca agcaaatcaa aaaaactcat tccaaaaaat ccaaactgag tactttttaa
    10981 agaagataaa atacacaaca ttcctaaaat ataaacaaca attcctatta aaatcaaagc
    11041 ttttttacgg ctcataccaa aagtattaat aaggtaaaaa gtgaaaggct ctatcattga
    11101 aacagctgaa gtaataccag caaagattaa agaaataaaa aacgctgctc caaaaataca
    11161 accaatcact ccaatttttt caaataaagt agctaaggaa ataaaaacaa gtcctggtcc
    11221 ttgctgatta ggattgtaac caaactcaaa gataaaagta aaaacaacca aacccattaa
    11281 taaaccaact aaaagattga taaaaataat atttaaagta ctggtaataa aattggtttt
    11341 atcaggcaga ctagcagaat aagtaataat cgttccaacg cccaaagaaa gactaaaaaa
    11401 agcaagtcct aaggcttcaa gaacatttga agtgttgatt ttggaaaaat caggtacaaa
    11461 aagaaattta accgccatta taaaaccatc tttgctaata gcataaacaa gcatcaaaat
    11521 aagcaaaata aacaatgaag gcatcatcca aacatttaac ttttcaatcc cattcttaac
    11581 acctttagaa acaatataaa aaacacataa aaaaaccaaa gtaaaacaaa taaactgact
    11641 taaaaaatcc tcacttataa aaaatccaaa ctgtgcttta cttacttcta gatccatagg
    11701 caaatttcca gtgatactta aaaacacata tttaactatc cagccaatca ccaaggtata
    11761 aaaagaaact attaaaatcg cccccaccat agtaaaacca acataagacc aagctttttt
    11821 atttgaaggt gctaactttt cataggcatt aaccggatct ttttcactaa tttttcctat
    11881 gctaagctca gctaaaaata tcacaaaacc tacacctaaa gtaagaatta tataaagcaa
    11941 gataaaagca gatccaccac tttgacctac tagtgttgga aatttccaag cattacccaa
    12001 gcccaccgct gaacctgcta ccgctaaaat gaaacctatt tttgaaaatt tagaactcaa
    12061 tgttacaacc ttgacttaaa aattatttta aaatattatt aaagcaaaaa aacttttaag
    12121 ctttattgaa aacaatcaaa tttaaatcaa aaatgtgaat ttttgtaaat ttcaataaaa
    12181 ataaagatac ttttggttat aattcgaatt tatttttaag tcttaagtag ggatacgcaa
    12241 gccgaactga tttaaaaatt gaaaaaaatt tttttataga aaggttaaga taatgaaaaa
    12301 agttcttttt ttattattag catgtacagc agtagctttt gcagctgaaa ctaatgctcc
    12361 agtagagcaa gaagctatta atgtatggat taaagcattt tcagttcttg cagcaggctt
    12421 aggtcttggt gttgcagcac ttggtggtgc tatcggtatg ggtaatactg cagcggcaac
    12481 aattgcagga acagctagaa accctggtct tgggccaaaa ttaatgacaa ctatgtttat
    12541 cgctttagcg atgattgaag cacaagttat ctatgctctt gttatcgcgc taatagcact
    12601 ttacgcaaat ccttttatag ttttacaata aaacttatca aagccctttt tgggcttttt
    12661 tctatgcggt tatggtggaa ttggtagaca cgccatcttg agggggtggt gcgctccgcg
    12721 tgtgcgagtt caaatctcgc taaccgcacc attatttaaa attataatca ttcaacttaa
    12781 aatactaact attcaaaatc aaatttcaac ttacaatttc ttaaagttac aaaaaataaa
    12841 aaatattggt ttttttaaaa aacttaaaaa atattaagat tttttttaag tataaagaat
    12901 ataattctat ccgttttcaa aaaccatccc ttaaaaagga ttattcaatg tttgttttta
    12961 taccattatt tacaattttt attttacttg caggcggata ttttgccaaa agaattggcg
    13021 ttttaaagca aaaacaagct aggacttttt tagattttgc tattattttt gctttacctt
    13081 gtttgatttt cgataaagca tatcatttaa attttgattt ttcattgatt atttttattt
    13141 ttattggatt gtttagctgt atactagcag ctttttttgc tattcttatt ggaaaagttt
    13201 ttcatttttc taaagtaact ttagtcagta tgtttttgct ttcttgtttt ggaaatacta
    13261 tatttgtggg tatgcctatt gttgctggta tatttaatga cccacaattt agcgctgaag
    13321 ttatatttta cgatgcttta gccacaactt tacctatatc actttttgga ccttttatac
    13381 tttctttggg aaatggagaa aaagtcagtt tgcttgctaa tgttaaaaaa attcttagtt
    13441 ttccaccttt tttagctttg ctttttggtt ttttgtgtaa attgattact ttacctgaat
    13501 ttattttctc tcctattcgt ttatttggtg cctctgcaac ccctgttgca ctttttgcta
    13561 taggtttagg acttggcttt atggcgatta aaacctctta caaacctaca atagttgtca
    13621 tctttgctaa aatgatttta gctcctttat tttt
//
LOCUS       DARGEX010000042        13652 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.042, whole genome shotgun sequence.
ACCESSION   DARGEX010000042 DARGEX010000000
VERSION     DARGEX010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13652
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.042"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            10..1260
                     /locus_tag="SF010_000953"
     CDS             10..1260
                     /locus_tag="SF010_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEG8229894.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWFVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1275..2639
                     /locus_tag="SF010_000954"
     CDS             1275..2639
                     /locus_tag="SF010_000954"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG8229895.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2647..3168)
                     /locus_tag="SF010_000955"
     CDS             complement(2647..3168)
                     /locus_tag="SF010_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229896.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGVIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(3149..4159)
                     /gene="ribD"
                     /locus_tag="SF010_000956"
     CDS             complement(3149..4159)
                     /gene="ribD"
                     /locus_tag="SF010_000956"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG8229897.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKNLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4365..4452)
                     /locus_tag="SF010_000957"
     tRNA            complement(4365..4452)
                     /locus_tag="SF010_000957"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4416..4418),aa:Ser,seq:tga)
     gene            complement(4474..4547)
                     /locus_tag="SF010_000958"
     tRNA            complement(4474..4547)
                     /locus_tag="SF010_000958"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4513..4515),aa:Cys,seq:gca)
     gene            complement(4566..4654)
                     /locus_tag="SF010_000959"
     tRNA            complement(4566..4654)
                     /locus_tag="SF010_000959"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4618..4620),aa:Leu,seq:taa)
     gene            complement(4664..4738)
                     /locus_tag="SF010_000960"
     tRNA            complement(4664..4738)
                     /locus_tag="SF010_000960"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4704..4706),aa:Gly,seq:gcc)
     gene            complement(4810..5562)
                     /locus_tag="SF010_000961"
     CDS             complement(4810..5562)
                     /locus_tag="SF010_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229898.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5635..6654
                     /gene="mutY"
                     /locus_tag="SF010_000962"
     CDS             5635..6654
                     /gene="mutY"
                     /locus_tag="SF010_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG8229899.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYKFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6640..7899)
                     /locus_tag="SF010_000963"
     CDS             complement(6640..7899)
                     /locus_tag="SF010_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8229900.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFAIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8065..8922
                     /locus_tag="SF010_000964"
     CDS             8065..8922
                     /locus_tag="SF010_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG8229901.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLGNYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDKPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLSD"
     gene            complement(8919..9725)
                     /locus_tag="SF010_000965"
     CDS             complement(8919..9725)
                     /locus_tag="SF010_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8229902.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFAQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9722..10498)
                     /locus_tag="SF010_000966"
     CDS             complement(9722..10498)
                     /locus_tag="SF010_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229903.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10498..11484)
                     /locus_tag="SF010_000967"
     CDS             complement(10498..11484)
                     /locus_tag="SF010_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8229904.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNAFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHAIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11459..13591)
                     /locus_tag="SF010_000968"
     CDS             complement(11459..13591)
                     /locus_tag="SF010_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8229905.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSTYNHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     DSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPIITDSTTLFDTDKNT
                     NNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNKTGNGIPPYYSSNLKAEIF
                     DTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVE
                     LSLSQNFLDDDLIFRESLTYLDAKISKGVNDGVRIPYVSKIKATAGLEYAWNKNFSNF
                     IDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKR
                     YYTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4586 a         2045 c         2195 g         4826 t
ORIGIN      
        1 ggaagaataa tgaatactcc taaatggact agtcacgata caaggtgggt tttatctctt
       61 tttggaacag ctattggagc cggcgtactt ttgttaccta ttagtgctgg gcttggtgga
      121 ttgatacctt tgttagttat acttgtttta gcttttccta tgacttactt agctcataga
      181 aatttatgtc gctttgtgct ttcaagttct aatccaaaag atgatattac ttttgttgca
      241 gaaagttatt ttggcaaggg cggtggattt ttaattacac ttttgtattt ttttgctatt
      301 ttgcctattt tattggttta tagtgctaat cttacaacaa ctttgcttga gttcttaatc
      361 aatcagttta atttcaatgc agatcttact catgctgctc gttggtgggt gagttttttg
      421 attgttggag ttttggtttt gatttctatt cttggtgaaa atgttgtaac aaaagcaatg
      481 agttttcttg tttttccttt tattatattt ttatttattt tttcattgct tttaattcca
      541 caatggaatt tatcgttatt tgcaaatgtt gatttttccg taatttcaac aagtaatttt
      601 tgggttactt tatggcttgt tattcctgtg atggtattta gttttaatca ctctcctatc
      661 atttcttcac ttgcttgtta ttgtaaaaaa gaatatggtg gttatgctga acctcgcgct
      721 agaaaaatta tttctttagc aattattctt atggtttttg ttgtaatgtt ttttgttttt
      781 tcttgtgctt taacctttac accagaagat tttgcatcag caaaagatca aaatatcaat
      841 attcttactt ttatagcaaa taaatttcct gaagtttctt tactagctta tgttggacct
      901 attgttgcac ttgtagctat tagcaaaagt ttcttagggc attatcttgg ttctcaagaa
      961 ggcttaaatg gtattttata taaagcaagt aatggtagaa ttcaaggtaa attcgctcaa
     1021 actttaacag cgatcattac ctttgctatc gcgtggtttg ttgcgtataa aaatccaagt
     1081 gttataggaa ttatcgaggc tattggtggt cctgttttgg ctattttgct tttcttaatg
     1141 ccgctttatt gtatttatcg ttttgatatt ttggcaaggt ttcgtaataa atttttagat
     1201 ctttttgttt tggtaatggg gatagttgca atttctgctg caattcatga tcttttataa
     1261 attaaggata aaaaatgagt aatttaagca tttttaaaat aggtgttggc ccttcttctt
     1321 ctcatacttt agggcctatg cttgctggaa atttattttg taaaaaagtt gctaaaaagc
     1381 ttgatgaaat tgatagagtt gaggttactc tttatggttc tttgtcgtta acaggcaaag
     1441 gacacttgag tgataaggct gtgatttggg ggttaaatgg cttagaagct aaaaatttaa
     1501 gtgcggcaat acaagatgaa gtaaataaaa atgctattga aaatgctcaa attgattttt
     1561 gtggtgagaa aaaactttgt tttaattatg aaaaagattt gatattttcc aaagattttt
     1621 tacctttaca tgagaatggt atgaagatta aagcttatga ttgtaaaggt gggttagttg
     1681 atgaggaaac ttattattct gtaggtggag gctttgtttt aacagctgcg gaattagaaa
     1741 aaaaaggtaa aaattctaac caaaataaaa agaaaaaact agatatagag cttaataacg
     1801 ctaaagaagc tttagagctt tgcgataaaa gagattggga tttagcagag ctttcctatc
     1861 gttatgaatt gcaatttcac actaaagagg aaattcgtgc ttattgtctt gaaatttggg
     1921 aagtgatgca agaagtgtat tataatggta cgcatccaaa tgaagattat ttacccggaa
     1981 aacttcattt aaaacgtaga gctaaagggc ttaaagaaag agtggcgatg acagctgatc
     2041 ctatgggcat tatagatttt atttctttat atgctattgc gattgctgaa gaaaatgcta
     2101 gcggagcaaa agttgtaacc gcgccaacaa atggagcatg tgccgttatc cctgctgtta
     2161 tgctttatct taaaaatcat actataggtt ttagtgatga aaaagctata gagtttttat
     2221 taacagcaat gcttataggt tctttttata agaaaaatgc aagtattagc ggagcagaag
     2281 caggctgtca agcagaaatt ggtagtgcta gttctatggc agctgcggct atggcaacag
     2341 ttttaggggt taatgctttt aaagcatgca acgctgctga aatggcaatg gaacatcatc
     2401 taggtttaac ttgcgatcca gttgcaggac ttgtgcaaat tccttgcata gaaagaaatg
     2461 cctttggagc tattaaggct ataagtgctg ctagaatggc aatgacacgt aaatctactc
     2521 ctatggtaag ccttgatgag gttatagaaa ccatgtatga aacaggaaaa gatatgaatt
     2581 ataaatacaa agaaacttct ttaggtggtc ttgctacaaa tttaaaaaca gtatgctaaa
     2641 gtgtttttac actttggtgt attttttcat tcttagactt aaaaattctt tcatttcttc
     2701 tttggaaaaa cttttaagaa tacgaatttg cttaaaaagc aagccaagat tgattgctcc
     2761 catcactaaa agcaataagc aaatcattaa aaaaacaaga tctatgactc caaattcatt
     2821 aatcatagcc aaacttgcaa aaaatacgct cgctaataac aaaaaaaata aaagcaatat
     2881 ttgttttaat tttgcctcat taaaattatc gcaattttga gtgaaatttc taaaaagtat
     2941 gatcttttta cccaaatttg aaactaaaat ttcatcattt tctttaaata agccttcttt
     3001 taaactttga taaaaaaaga tttcattatt taaatttaaa gcatctttgt agcttgataa
     3061 ggtgtagtct ttgtaaaaaa aggattttaa ttcatttttc ttttctattt taaataatct
     3121 taaatcattt ctcgcataaa aaaatccact aaagttcata aatgccataa gtatcactcc
     3181 ctaaaaaatt cctataaagt ggcttgaaat ttaaaggtat tgtaacattt ttttcatcat
     3241 ttaaacttga actttggaaa atcaaaaaca tatctatttc atctttaaag gttttgagaa
     3301 aattttctcc accctcatac attaaaaatt tagcttcact tggaatttgg gtataaattt
     3361 ggcggtttgg aactttaaat aaagggatat ttttatcaaa attatctata ttttgacggc
     3421 ttaagataca aagattaggc gcttttgctt tgcaaagcct agcatctagt atagggtgat
     3481 cttttcttat ggtttctcca ccgactacaa gcaaatcaat caccgctcta attttatgtg
     3541 cataagtgcg acttagctca ttgcttacga ttttgccaaa aggtgagccg ttcatagaaa
     3601 gggctaattt aaaaagttta aattgccctt tttgccattt taaaaaaggt tttaaaagtt
     3661 tttttccttc ttctttaagt atgtcaaatt caacctctat accttgtttt tttaaaaatt
     3721 cagccccacc acttgcgatt ttatttccat ctttaacgct gatgaaaatt tttttaaaac
     3781 ctagctcgct aaagagtttt gcacaaggag gcgtttttcc ttgatgagag caaggctcaa
     3841 gtgtgacaaa agctatgcta tctttaaata caccttgatg gtttttgcaa ataaactcat
     3901 gcaaggcgtt tgcttcttta ggcaatgaaa tttcaggtct taagttttta aaagcatgag
     3961 ctatggcatt aagttccgca tgagctaatc cagctttttc atgagctttt atggctaaaa
     4021 ttttttcatt tttatctaag attacacagc ctacagccgg atttggatag gttaaaaact
     4081 gatatttcca agcctcattt aaagctaaat tcatataaaa ttctttcatt tgcctacctt
     4141 gtattttaaa atttgacata tttttaaaat tttatatttt tgttttaaga taacaaattc
     4201 taaattttcc atttgtattt cttattttta attatattag ccatagtttt tctaagtttt
     4261 tttaggatat aacaaaaata gtaagaccga agtattattt ttcatttgta atatccttta
     4321 taatttcagg aatgatataa gcttgataaa ctagaaagtc ttggtggccg ggagaaaggg
     4381 attcgaaccc ctggaggtgt gaccctcaac ggttttcaag accgccgctt tcgaccactc
     4441 agccatctcc cgataaagta aagttttgcc ttttggaggc gacatccgga ttcgaaccgg
     4501 agatcaaggc tttgcaggcc catgccttac cgcttggcta tgtcgccctg ataatgttga
     4561 aaaagtggtg cccgaggccg gacttgaacc ggcacggaag aaaaattccg agggatttta
     4621 agtcccttgt gtctaccaat tccaccaccc gggcgggtga ttatggagcg ggaaacgaga
     4681 ttcgaactcg cgaccccaac cttggcaagg ttgtgctcta cccctgagct attcccgcat
     4741 aaatttctga aagaattgaa gataaaagta tagcaaaata aacttaaaag gagtttattt
     4801 tgccttaagt tatttgcaaa taaataaagc tttcgcgctt aaaatttgtt ctttttcgct
     4861 gataattgga gatgaaagtt ctatattgtc agattttgca tttaacattc taggtgcgat
     4921 attggcattt gtatttactt gtaaattttt caatacacaa gttttattaa gatctaaaga
     4981 gtaagttttt tcatattcgt atgatgtttt taaaagctct ttgtagagat tttctttgtt
     5041 gttgtttagt gtatcttttg aaaattttgt ttgtatggct ggtgttgaaa cgctgatgaa
     5101 attattttta gctatgatag aattgatgtc atttaaaagc ttgttaaaat ctgcaagttg
     5161 gttttcttta aattcacatt ctaaattcgc atcaaatctt tgaccttttg gagtttgtat
     5221 accatcttta taggaaaaat taggttctaa agaaaaactt cctccgctac aaaaattttc
     5281 tttttttgag cgttctaaaa tttgattgaa agtatttgtg atttcagctt tttcactatt
     5341 gtctaatgta atttttgaac ttaaattttc atttgcccaa aaattaatat ttgcatataa
     5401 aatatcgggt tttagcgtat tgcttacttc tatatttctt gaaaaatata aatcatgatt
     5461 agagtctttt ttgcctaaaa attctacatt aaaaaccacg cctgcaacaa aaagtaataa
     5521 acataaaaaa cctacaccta aacctttaaa aaaagctaac atggatatcc ttaataattt
     5581 aatttgagct aattttagca aaaaatttta aaattttttg ttatactctc atttatgcaa
     5641 aaaaaagagc ttgaaaaact acaagaaaat ttacttcttt ggtatgaaaa aaatggacgc
     5701 aaaactttgc cttggcgtaa tttacaaagt caaaattgtg atgaaagttt aaagcatatt
     5761 gatagagctt atggggttta tatcagcgaa attatgcttc aacaaactca agttaaatca
     5821 gttttagaaa ggttttattt cccctttttg caaaaatttc ctactttaga aagtttggct
     5881 aatgctaatg aagacgagct tttaaaggct tggcaaggac ttggttatta cactcgtgct
     5941 agaaatttaa aaaaggcagc tttagaatgc gtggataagt ttggggctaa attacctaaa
     6001 gaagttgagg atctaaaaaa attaagtggt ataggagctt atacagcagg cgctatagct
     6061 tgttttggct acgatcaaaa ggtttctttt gttgatggca atatacgccg tgtgctttct
     6121 cgtctttttg ctttggaaaa tcctagcatg aaagaacttg aaaaaagagc taaagagctt
     6181 ttaaatttaa atcatgcctt tgatcacaac caagctttgc ttgatatagg ggctttggtt
     6241 tgtgtgggta aaaatgcaaa gtgtgggatt tgtcctttgt atgatttttg tcaaggcaaa
     6301 tttcatacag agctttatcc aagagctaaa aaaatacttt atgagagttt aaatttaaat
     6361 ctttttttgt ttgaatttaa taaaaaattt gcgatacaga aaagccaaga taagctttat
     6421 aagggtatgt ataattttcc tttttttaaa gaaggagagt ataaactttc taaagatatg
     6481 ggttttgtag gggagtttaa gcacagctat actaagtata aacttaatat caaggtttat
     6541 catcaaattt taaacaatga aaataaaaat tataaattta aaaccttaaa agagttagaa
     6601 agtaccgcac tttcggcact ttctttaaaa gcgttaaaat taattaagct ctgatttttt
     6661 aggcaaacat aaagtagcta taagcatgat gattgtaaaa atagctatat atataaaaaa
     6721 gccattttct atacctgcat ttttaaattg taaagcaacc caaggagcag atcctccaaa
     6781 aacagcattt gaaatagcat aacccaaacc tgtccctaaa gctcttacat gttcaggaaa
     6841 aagttttgct ttaaaaatcc cagcaactga agtataaaaa cttaaaataa caaacaataa
     6901 taccaccaac ataaatgtca aagaaggatt attttgtgcg ttattggcta taagtgaaaa
     6961 aataggataa attcctacca atgccaaaat acaaaataca attaaagatc gtttgtgacc
     7021 tattttatct cctatatatc caaaaagagg ttgaatgatc attagtataa ataaagcacc
     7081 taagaaaaga ttattaacaa gcattttatc catacccgta ttttccataa aagttttagt
     7141 ataagttgta atagtataaa aagctaaaga acctccagag gtaaccccaa gtaccattaa
     7201 aaaaggtttc caagatttgc ataatgcctt taaagtacca cgatcttcat gctggtgaag
     7261 ttttgtagca ctttcattca tcatttttct tacaaaaagc gagcctagtg ctaaaattcc
     7321 gcctattgca aaaagtattc tccaagcata atctttcata tcatcaatgc taaaaaataa
     7381 aaacattata ctaatgcttg caacggccaa aagttgacca cctattaggg ttacatactg
     7441 aaaagatgag taaaaaccgc gttttccttc cgtagcaagt tctgaaagat aagtagctgc
     7501 tatgccatac tccccgccta cactaagacc ttgaataagt cttgctatta aaagcaagat
     7561 aatagcaaga tcgcccactg tatctttgct tggtaaggct gctatcataa aagagcccaa
     7621 agccattaaa accactgata taaccataga tttcttacga cctactttat cagccaaaga
     7681 accaaaaagc caagaaccta taggacgcat aaaaaatcct gctgcaaaaa ctccaaaggc
     7741 attgatttgc tggataacag gattatctga agttgaaaaa gtatgagcaa aataagttgc
     7801 tgtaaaagca tagatataaa agtcaaacca ctctactaaa tttccgctac ttgcagcaat
     7861 aatagagcga atttttttcg tgcgagtaag ctcttgcata aacccttcct taattttaga
     7921 tttttattta agtatagtgt gatttttgtt taatatattt aaaaataaag aagagaaata
     7981 aaaaagataa aaatatcgat aaaaatgtta catattttaa taaatttcat aaattttggt
     8041 aaaatgttta ctctaggaaa tataatgaaa tttaaaaaaa tatatataga attaagtgat
     8101 atttgtggtt taaaatgcga tttttgtcct tctcgaaaag gaattcgcgg ggtaatgagt
     8161 gaagaaaaat ttcaaaactt agcttatgaa atttctaata aagctgagct ttttaccttt
     8221 catcttttgg gcgatccttt gcttttacct aatttgggaa attatctaaa aatcgcaaaa
     8281 gatgaagcta tgaaacttga aatcactaca agtggctttt atctaaattc taaaaatcaa
     8341 gctttattgt tagggtatga gaatatccat caaatcaata tttctttaat gtctttttta
     8401 agtcaaagca aaatttcttt agaacagtat tttaagccta ttttagaact ttgcaaaaag
     8461 catttagagc aaaaaagcct ttcttttatc aatctaagac tttggaattt agatgctaat
     8521 tttaaagcac ctaagtcaaa tttaaaaatt tatgagtttt tagccaaaga atttgaagct
     8581 aagatcgatg caaacttaag taaaaatcgc ttacaaagac atattttgct tcatcaaaat
     8641 aaacttttta aatggccaaa tttaaaagat aaaccccttt ataaaaaagg aaaatgccat
     8701 gctttaaaag agcaaattgg gattttaagt gatggaagtt tagtgccttg ctgtttggat
     8761 actaaagcag atattaactt gggaaatgtt tttgaaaata actttgataa gctttttaaa
     8821 tcaccgcgta taaagatgat gaaaaaagct tttgaagaag ataaacgcat agaaaaactt
     8881 tgtcaaactt gcgaattttt taaagcaaga ttgagtgatt aaaaattgtt attttctagc
     8941 tttgttttaa attcttgaat tctatctatt atcttaggac taagacgtaa taatataggt
     9001 gtatctttgt taaaataaat acttcctgtt ttaactgctt tggtattttt caataaagca
     9061 tttgtatcta aaagattgtt tttagcatta attccaagaa tgagtatatc tggattttgt
     9121 ttcagtatat attctgctga tataacaggt cttgaaattt gactttgcgg acttaaattt
     9181 ttaatcccta taagtcttaa aatatcagct attaaagaat tatcattaaa ggccattaaa
     9241 gggttgctag aataaagata aatcgcactt ttatttaggg gtttatcgct taattttttt
     9301 aaattttgag caaattcttg ttttaaaagc tctgcttctt tttctttttt ggtgatttgg
     9361 cctaaggttg tgatattttt tgttatatct tctaaacgct cggcttttaa attgatactt
     9421 ttgataccaa aatttttaag tccttcttct aaatttaaag aataagagct taaaatcacc
     9481 aaacttggtt ttagtgctac tattttttca agtgaaggat ttgaaaaagt gcctacgctt
     9541 gtaagttttg aggtttgatc tttaggatag atatttgagt gttgtaaagt ggcaatgcct
     9601 acgatttgat cttcagcctt aagcataaaa agggtttcta tgcttgcagg atcaagcact
     9661 acaaggcgtt cttttgcatt tagtgtgatt aaaaacaaac tcataataat taaaattttt
     9721 ttcatttttt ctcctttaaa gctaaaatat aaggtttaga atttttataa ataatctcgc
     9781 agtttaaatc ataaatttct tttaaaattt cttgagtaaa aagctcttta ctcgttccaa
     9841 aatactttat ctccccttct tttaaaaaaa ggattttatc gcagaacata gaagctaaat
     9901 ttaaatcatg caagatagca acaacggcta tatttttttc tttaactagt ttttcgcaaa
     9961 ggcttaaaag ctctatagca tagtttaaat caagggctga agtgggttca tctaaaaaaa
    10021 gaatttttgg ctttttaagt aaagctcttg ctaaaagcat tctttgaaat tcacctccgc
    10081 ttaaagaaag tatgcttctt tctagaaaat tttcaagtct taaatcttta gcaaattttt
    10141 taatttctaa aatatcttct ttagaataag aactaaaagc gtgttttaaa ttcgcatatt
    10201 tgctcattaa aagcacatcg atgactttta aaggggtgtt taattctgat ttttgaggca
    10261 caaatccgca aattttggca aattctttaa gagaaaaatc cttgatattt gtgttaaaaa
    10321 gacttatcac tcctttattt ggacttaaat ttttaagtat aagttttaaa agagtgcttt
    10381 tgcctgagcc atttggccct aaaattccta taaaagcttg gtttttaagt tctaaatgaa
    10441 tattttttag taaatctttt tggtgataag caaagcttaa atcatgtatt tttagcatta
    10501 taaaaatctc ctagcgctta aagccaagta taaaaaaata ggagctccaa aaaatgcagt
    10561 tagaattcca atcggaattt gcacaggagc taaaagagtt cttgctaaag tatcacaaat
    10621 aagtaaaaat aatcctccaa atgctgtaca taaagggata actaaggcat tattataatt
    10681 tttaagcaaa agtcttatag catgaggaat gatgagtcca acaaagccta taagtccgct
    10741 aaaagcaacc gcaaaagata cagccaagga tgagacaatg agtaaattta tctttaattt
    10801 ttgagcattt acccctagat ttctagcttc atcatctccg cttaaaagta tgtttaattc
    10861 gtttttatga gcgtaaaaat aaaacaaaca aaaaattaaa ggcaagatta aaattcccac
    10921 acgaaaccaa gaagcattgc ctatatttcc cataagccaa gcgactattt taaaagaatc
    10981 ctcgcctata agataagtga aaaaagaagt gaaagcccct aaaaaagatg aagctgctat
    11041 gccgataatg agtaaagttg ctatagaagc tttagaagaa attttaaaaa ctcctagggc
    11101 aaaaaaggca gagcaaacaa aacctaaaat tccataataa taatcattca attttaacaa
    11161 atacgccaaa accgctccaa aggttgccgc agaagctata cctatgatat aaggatcagc
    11221 tataggattt gaaaatgcat tttgagtgat agccccacta ctagctaaaa gcataccgat
    11281 taaaatcgcc attataatcc gtggtaagcg tccatctatg attatttgtc ttaaaatttc
    11341 atcttggcta aagatatatg aaaaaagctc ttttgggttt aaattctcat ctcctaagca
    11401 aagtgctgta aaagaagcga ttatataagc taccaaaagc cctataatca ctaaaatttt
    11461 agaatgcgta tttaaattca acatagtagt ttctgccatt tccaactagg tattgatcat
    11521 ttatactgtc ttgataggtg tagtatcttt tatcgaaaag attgcgaatt cctgctaaaa
    11581 tttgtaattt tttataatta tatttcatgc caatatctgt taaaaaataa tcccttatcc
    11641 aagaattttt agacattttt cctgtatttt catctatagt gccaccatct tttgctctag
    11701 aaaaataggt taaatcaata aaatttgaga aatttttatt ccaagcgtat tcaagcccag
    11761 ctgtggcttt gatttttgaa acataaggaa ttctcacgcc gtcattaaca cctttagaaa
    11821 ttttagcatc aagataagtt agactttctc taaagattaa atcatcatct aaaaaatttt
    11881 gactcaggct taattctact cctaaacggc gagtttgatc tatattataa tatttccacc
    11941 aagatccact agtagaatga gggtttccaa gataagaaat ttcatctttg cttagggtgt
    12001 aaaataaagt tagattaaag ccgtaaaaat cccaccaaaa atcatcaata cctagttcaa
    12061 aggtatcaaa gatctcagct tttaggttcg acgaataata gggtggtatt ccattaccag
    12121 ttttgttgcg attgacaaat tgagcaggtg taggagaaac aaaacctctt tcgtatttaa
    12181 gataaagatt gcctgtgtca gagtatttaa agttaggggt gatttcaaaa gcaaaattat
    12241 tggtgttttt atcggtatca aaaagggttg ttgagtctgt gattatagga tttgatgatg
    12301 gcggtcttcc gttcatactc atttcatttc tataagatct attggtatta taagtgctaa
    12361 attcatatct agctccaccg gataaagtga aaaattcatt aaaattatga gaatcaagag
    12421 cgaaaataga atggctttgt ttagtcatat ccattaaagt tgtcatcctg tgataattta
    12481 tgacacctgg aacgctataa tacaccaaac tctttctttt tgcatcatgg tttgtaaatt
    12541 cataaccaaa aataaaataa gaattatttg cataatttag cttgtttttt aaacttatcc
    12601 ctgtaagtgt gtcttcaaaa ccacttccat tttgataagc tgtagttccc atcatagaaa
    12661 tttcatcttt tagataattg atcttttgat tttgccaaaa agcttctagg ttaaattccc
    12721 atatatcatc aaaatagtaa tgataatcca aagaaatttc agggcgattg atttgtgtga
    12781 tattgtcact attgcctttt tgggttggat cgctttgagc ttgtgctttt gttagatagc
    12841 cactgctggt atttttgctt ttaaaataat tataacccaa agttaagtcg ctattatcat
    12901 tgatatcaat ataggttttt gtgttgataa aatagccttt ttcattataa cctttttgat
    12961 atccatcaag gttaaaactt tgtatatcaa agctaaaagc taaattttca tttatttgtt
    13021 tggcgccatt gatacctaaa tttccaccta gtccaccatg attataggta ctgcttttta
    13081 aatttatagc aaaagcatct gatttttgtt tttttgtaat gatattaatc acgccacctc
    13141 tagtaccact tccataaagc acagatccac ccccaggtat gatttctatg cgttctacat
    13201 tatctaaatt gatactatct agtggggtta caccatggga attatcaaga acattaatag
    13261 catgcccatc aatcataact tttacagcta tattggattt atttccttgt ccacgcatat
    13321 ctatattgcg tccaagtcca aaatttacaa aactaatgcc cgaaattctt tctaaggctt
    13381 gttctaaaga aacataacct ttattttgta gatctttgcc ttctatgctg attacattgc
    13441 gtaaatttga atccgcatct tgttcaaaac ctgttgtact aacaacaact ttttgtagat
    13501 tgatagcttt atttgattct tgtgcattta aattagttat tagcaataat gcaaataaag
    13561 ataatttaaa agctttttta tttgggtgca aattttactc cttaaataaa ataaataatg
    13621 ataatttata tcataataat ttagaaataa at
//
LOCUS       DARGEX010000043        13438 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.043, whole genome shotgun sequence.
ACCESSION   DARGEX010000043 DARGEX010000000
VERSION     DARGEX010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.043"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..2052)
                     /gene="copA"
                     /locus_tag="SF010_000969"
     CDS             complement(<1..2052)
                     /gene="copA"
                     /locus_tag="SF010_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG8229906.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKEKLSVFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQICDLKGEGRVIVGSGIKYKEDNDNYLVGSAQFLHENEIDTKESDIFFDSFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKEQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAALAM
                     CF"
     gene            complement(2052..2246)
                     /locus_tag="SF010_000970"
     CDS             complement(2052..2246)
                     /locus_tag="SF010_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG8229907.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(2236..3186)
                     /gene="czcD"
                     /locus_tag="SF010_000971"
     CDS             complement(2236..3186)
                     /gene="czcD"
                     /locus_tag="SF010_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG8229908.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSMDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSKNEI"
     gene            complement(3261..3524)
                     /locus_tag="SF010_000972"
     CDS             complement(3261..3524)
                     /locus_tag="SF010_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG8229909.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(3595..4089)
                     /locus_tag="SF010_000973"
     CDS             complement(3595..4089)
                     /locus_tag="SF010_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG8229910.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(4086..4862)
                     /locus_tag="SF010_000974"
     CDS             complement(4086..4862)
                     /locus_tag="SF010_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG8229911.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            4929..5855
                     /locus_tag="SF010_000975"
     CDS             4929..5855
                     /locus_tag="SF010_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG8229912.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLGDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(5852..6454)
                     /locus_tag="SF010_000976"
     CDS             complement(5852..6454)
                     /locus_tag="SF010_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8229913.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSALGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(6535..6762)
                     /locus_tag="SF010_000977"
     CDS             complement(6535..6762)
                     /locus_tag="SF010_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229914.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(6773..8203)
                     /locus_tag="SF010_000978"
     CDS             complement(6773..8203)
                     /locus_tag="SF010_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG8229915.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLIIFNVAHMTDFALPLPGINLPIGPSGALVNVLQDGVYNLGNLTLANIHFENYNA
                     FGTNFNYFVSLGYSNGTNAHTLSAIPAVQSQLEFNEKDGYAVHVGGRYDFTKTLKVGY
                     EFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGN
                     RGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(8367..8849)
                     /locus_tag="SF010_000979"
     CDS             complement(8367..8849)
                     /locus_tag="SF010_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8229916.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(8859..9566)
                     /locus_tag="SF010_000980"
     CDS             complement(8859..9566)
                     /locus_tag="SF010_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG8229917.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFARKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            9675..10016
                     /locus_tag="SF010_000981"
     CDS             9675..10016
                     /locus_tag="SF010_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8229918.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            10016..10324
                     /locus_tag="SF010_000982"
     CDS             10016..10324
                     /locus_tag="SF010_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8229919.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(10342..11934)
                     /locus_tag="SF010_000983"
     CDS             complement(10342..11934)
                     /locus_tag="SF010_000983"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG8229920.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFLLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEVKNKMEH"
     gene            complement(11946..12185)
                     /locus_tag="SF010_000984"
     CDS             complement(11946..12185)
                     /locus_tag="SF010_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG8229921.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(12187..12810)
                     /gene="gmk"
                     /locus_tag="SF010_000985"
     CDS             complement(12187..12810)
                     /gene="gmk"
                     /locus_tag="SF010_000985"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG8229922.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFKDELYFSISSTTRKP
                     REGEKNGVHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQDALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(12807..>13438)
                     /locus_tag="SF010_000986"
     CDS             complement(12807..>13438)
                     /locus_tag="SF010_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229923.1"
                     /translation="NKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEE
                     SEEVLEEFAPVVEEDVQDEMDDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         4570 a         2479 c         1755 g         4634 t
ORIGIN      
        1 aaaacacatt gcaagtgctg ctatatgagg acttaaagag ataaaaggta taaatcctgc
       61 cgcgatagga atgcaaagca cattataaat aaaagcccaa aaaagattta gcttaataat
      121 accgcgtgtt tttttagcaa gtttaaaaca tttaaaaatc gctgataaat catcttttat
      181 caagataaaa tctcctgttt ttttagcaag ttcatttgcc tttgaaaaac tcatactcac
      241 acttgcagca gataaagccg ccgcatcatt gatcccatct cctacaaaaa gagttttttt
      301 aaatttttga atgatttgta gtttttcttc actcttaagc tgagcgtgaa attcgtctat
      361 ttgtaattct ttggctattt tttctacatt ttttacatga tcgccgctta aaataaaagt
      421 tttaagattt tgctctttca aatttaacac aagctctttg gctccatctt ttaaagcatt
      481 gcttaataaa acaccgccta aacacttttt attcttagca aaatacactc taacatattc
      541 tttaaaagag tcaaaaaaga tatcactttc ttttgtatca atttcatttt cgtgcaaaaa
      601 ctgcgcactg cctacgagat aattatcatt atcttctttg tattttatgc cagaacccac
      661 aatcactctt ccctcaccct ttaaatcaca aatttgatct ttatgtaaag ccttggctat
      721 aggatgagag cttaaacttt caatttgaca taatttatca aaatcatctt tagaaagatt
      781 gtgtttaaaa acactcaatt tttcctttgt taatgtaccc gttttatcaa aaaaagcata
      841 cttaactaag gctaattttt ctaaagcagc aggattttta ataagaatga aattttttgc
      901 cgcatttgca cttgccacaa ccaaagctat aggcgttgca agacctaaag cacaaggaca
      961 agagatcaaa agcacagcac aagagtgtaa aaaagctgta tttaaatctg cttttagcac
     1021 ccaaaaaaca aaaactaaaa aagcaaaaaa tattataccc cctacaaagt atttagaaat
     1081 ttgatctgct aaatttgcca aaggactttt gatacttcct gcttcaaaaa ctagattttt
     1141 gatttgttct aaagtactat ccatggcctt tttgtttgct ttgatcctta aagcaccatt
     1201 taaaactact gctcctgctt gaacttcatc gccttctttt tttaaaacag gcaaaaactc
     1261 cccatttaaa aaactcatat caagctctgc actccctaaa agcactactc catctgcaac
     1321 aatactttct ccttctttta ccaaaagtac atcgccactt ttgacaaaag aacttgaaat
     1381 ttctttgata ctttcatctt caagcaaaat ttttgtcttt tttgtgtcta tattttctaa
     1441 aattctttga taatcttgtg ccttaaattt agccttactt tcaagatatt ttcctaaaag
     1501 cacaaaggaa ataatcatca ttgcaccact aaaatacaaa tcttcttctt tgaaaatttg
     1561 caaatacacc aaaaaagaat acacaaaagc actcaaagtc cccaaagcta caagggtatt
     1621 catatctaaa tttttacttt taagtcctaa aaaagcatga gaaaaaaagt ctctcccaca
     1681 ataaaatatc ccaaaaaaac tcaaagccat ttggatattt tgagaaaaag aacttttaac
     1741 aaacatttca aaatacataa taatcacact caaaactata cttaagagca aattttttct
     1801 taattctaag tgtttttttg ccttgtatgc gttcaagctt tgttcatctt ctaaaatttc
     1861 aaagcctaaa ttttgaattt ttgcgatgat atccttgcgt ttttcttgat cttcaagtaa
     1921 aaaaaccccg ctagaattca cataagaaac actagcatct ttaacaccat caattttttt
     1981 acaagctctt tctatagcgt tagaacaatt aacgcaagtc attttgccta tttttatacg
     2041 caattcttcc attataaacg ctctacgatc tcaaaaccta aatcttgaaa ttcttttgta
     2101 aaatttgata cttgattttc ttctaaattt aaacttaaaa ttttttgctc caaatccact
     2161 tctatatttc caaattcatc ttcaagagaa tttttgatca aatttacaca attcatgcaa
     2221 ttaacatttt ttactttaaa tttcattttt actccttata ggttgtatgg taatgtgccc
     2281 gatttcaaat tcatgcaata acttatgaga taaatcctga gatagttttt caaattcctt
     2341 tagattgcaa actcttactt ttaaatgcat agaggctact agcattttat tagtgatttg
     2401 agtaatatgc aaatccacta cctcatccac actaggattt aaaagcaaaa cttgtcttac
     2461 tttttctata tccacaggag aactttcaag caagacatta gcgctttgtt taagcaagat
     2521 aatcgcccat cttaaaagca agattgataa tacaatagct aaaatcgtat ctatataaac
     2581 aataccgcta aaatacacca cgatcccacc tataataacc gctaaagaac ccaataaatc
     2641 gctcatcata tgcaaaaaag cggacttcat attgacattt tctaaatttg cacccttaaa
     2701 catcatcaaa gcattaatcc catttaccaa aaagcccaaa atagctacaa ttatcatggt
     2761 tttagcgtca atttcttttg gattgataaa tttttctata gcctcataaa tgataaataa
     2821 agccgataaa ataatggtta aagcattgat aaaagccact aaaacttcaa gacgaaaata
     2881 cccaaaggtc ttttgatgat cttgccattt ttctacagct ataatggcta aaaaactaag
     2941 agctaaggca aaaacatcag aaaacatatg caaagtatcg cttaaaagtg ccaaagaatt
     3001 tgaaaggatt gaataaataa attgcacaag catcatagaa aaagtcatta aaagagaaat
     3061 ttttaaaatc tttttatcca tactccttgc atcagcatgg gaatgatgat gttcatgaga
     3121 atgttcttcg tgattatgat gacaagattt gttagctaaa ggctcgtgtg ataaaaattt
     3181 atacatctta tatccttttt gcttgacatt ttaagatatt aagctaaaaa ggatataaat
     3241 atttgttatt tttataaaaa ttaaaagtca aaaagctcgc ctagccaact ttctttcttt
     3301 ttctttttat agtaatcatt gtgctgatga taagctgagt cattatatct tgactcttgt
     3361 cttggagctt ggttaaaatt tgctgtatta gggacactgc gttctatgat tttgtcaagt
     3421 tctccacgat caagccaaac gccacgacac tttggacaat aatcaatctc aactccactc
     3481 ctatcactca taaccaaatc tacattacaa actggacata acatacaata cctttttttt
     3541 aaatttttga tttaaaatta taaaaagaaa tattaaacaa atttacaaca agttttaatg
     3601 tttttttgca tgtctagtca tcataaaact ttgttcaaaa aatataagca aggtaacact
     3661 cactcctata gctagagcca aagtcacaga aacagttgta aaaaaataat caaaaaattg
     3721 aaccaaaaat tcagacttag ccttcaaatc atcactgcgt ataaaagaaa taagatacaa
     3781 aatcgcttta taagcataaa ttccaggtat cataggaata agagcaggga aagcgataat
     3841 ttcagcagga gttttgatga tttttgctaa aacaattcct aaacatccta tgcaaaatga
     3901 agcaacaaaa gttgcaattg ctaaagtttg aaaatgaaaa tattccacca aggtaaaacg
     3961 aagcccatgt gcaattgccg ctaaaagagc agataaaata agggttttta aaggtggatt
     4021 acaagcataa gcaaacccaa atcccgccac agcagcaaaa aacatatctc ttaaaataaa
     4081 ttcaatcatc ttaaaatccc aaaatccgaa atactaagcg tcatgtaaat tccaagtgct
     4141 atacaacaaa tcaaaatagc cacgctgata atacggctaa gccccattaa aatatgatct
     4201 tttaatatat caatcacaga atttataaaa aatactcctg gtataagata caagatacta
     4261 gaacccaaag ccacatcaga agtattggta tatcccatat ccagtccaaa aaatacaaac
     4321 cacgatgaga taaaagaaca aaggatgtat tgaattctta aatcaatctt tgctttagtt
     4381 aaaatatatc ttaacaacaa tcccacaaaa gttgcaaaaa atactaaatt tccagcacca
     4441 aaatcaccac caaaaagcct acaaaaagct gaatttgcca tagaaacaaa taaaagatta
     4501 agcaaataag aatgcttttt ttgttgagaa atttgctcaa aaacgacttt tgctttttca
     4561 agatcgtatt tgtgatcata tatagcccag cttaaagcac ttaaatcaaa aataagctta
     4621 aaattaacat gggcatgatg attgggtata acataagttc tttgaatgga gttatcatcc
     4681 atatctacaa catttaaagt aatatgatga aaaaagaaat tgatatttat ctcatagcca
     4741 taaacctcag ctattcttcc tacgcatttt gccaccctag ctgtataagt tccagcacct
     4801 agcaaagttt tagtatatac gattaaaaaa ttagttaatc tttgtatatc aggtttttcc
     4861 atattttaat aatctttgat tgaatttgtt ataattatag caaattttaa aataaataag
     4921 gagaaaaaat ggcaaaaatc ggtatagttg gtttaggtta tgtaggagct gctagtgctt
     4981 atagcatagt tactcaagga atttgttcag aactttactt atatgatata aaacaagatt
     5041 tagctctagc tcatgcaaga gatttgggag atatgtcagc cattcatttt tcttatacaa
     5101 aaatttttca tgtgccaaat ttagaaaatt tagcttcttg cgatattatc attttagctt
     5161 ttagaaaaga aagcttaaaa gaattaccta gtcgcttggt agaacttcaa aacaatatcc
     5221 tcgaacttaa agacattgtc ttaaccttaa aaaatgctaa ttttaaaggc aaatacatcg
     5281 tcgcaacaaa tccaaatgac accataactt actacactca agtattaagc caattaccta
     5341 aaaatcatgt ttttggtagt ggaacaaatt tagatagttc aagacttaag aaatttttag
     5401 ccaaagattt aaacataaat tcaaaagata tttttgcttg tatgattggc gaacatggag
     5461 attctcagtt tgcagcactt tctaatgcaa gcgttttagg acaaaattta ttagattttt
     5521 acaagcaaag attaggcaaa gatttagaca tacaagaact cgaaaaagcc gtgattagtg
     5581 agggatattt catctatgaa cgcaaaggaa gaacagaatt tggcatagga acttcttgtg
     5641 caaatttagc caaagccatc ctagaagata gaaaaagttt acatcctgta agtgtggttt
     5701 ttgatgatat agctttttca atgcccgcta tcataggaaa agatggtata gaaaaggttt
     5761 ttgaattaaa attcaatgaa aaagaaaaaa taaaattaga aaattcaaaa caacaaatca
     5821 aaaacgccat acaaagcgta aaagataaaa tttaagcctt tttaaaaggc tttttgattt
     5881 taatataaat taaacttgct aaaatcacaa aaacaattat aataattaaa atttgagtta
     5941 aataagtttt aatcaactct tcattttgtc ctatataata acccaaaaat acaagtatag
     6001 ccacccaaat agcgctacca agtgcagtaa aaagtataaa atttataagt ttcattttta
     6061 ccaaacctgc aggcatagaa atatactgac gaatccctgg caaaagacga caagtaaagg
     6121 ttgaaaattc cccatgtttg ttaaaaaatt cttcaaattt agcaaatttg acttcgttta
     6181 taccaaaata cttaccccat tttaatacaa aatttttacc ccaaaaaaag caaatataat
     6241 aattaatcaa agcccctaaa gcagaaccta aagtcccact aagtatacaa agagtgatat
     6301 caagttcgcc tttatgtgcc aaatatccag caggtatcat aacaacttca cttggaaaag
     6361 gtataaaaca actctctaag gtcattaaga taataatacc caaatacccc caagcgctag
     6421 ccgtctcaac aataaaagaa atgatttctt gcatattagc cttatttgaa gaaaatttta
     6481 aaaaattgta gcttaaaaga ttaaacagta aaaagcggtt ttataccgct ttttttattt
     6541 acctgcaact gaaacttgat ttggattgtc cgctgcacga gcgatcatac actcttttaa
     6601 aacagcagca tcagctggat cgctaacttt tttattaatc cagcgttcaa cttgtttcat
     6661 tgtttttgac tctggctctg gagcttcgta ttttgccatc aaacttgcac aatcagccaa
     6721 agcaatgata ggtaataaac ttgcaaaaag tatttttctc atcttttgct ccttagaatt
     6781 ttacattata cattaacatg atattatcag ctcttgcttt atcttttttc gctccaccaa
     6841 atggtaagcc acgattaccc caaatatttt ggatattagt ataacttaag cgtaagaatt
     6901 gatatctatc aagttgataa atcacataaa aatcatgtgc tgttcctctt gtcattctta
     6961 tattaagcgg atcgttgata cttggacggc tcatagtata ccagtatcta cttccccaga
     7021 agaactcata ccctactttt aaagtcttgg taaaatcata gcgtccacct acatgcacag
     7081 catagccatc tttttcatta aattccaatt gagattgcac agcaggaatt gcacttagag
     7141 tatgtgcatt tgttccgtta gaatacccta aagatacaaa ataattaaaa tttgtaccaa
     7201 aagcattgta attttcaaaa tgaatatttg ctaaagttaa atttcctaga ttgtaaacac
     7261 catcttgtaa aacattaacc aaagcaccgc ttgggccaat tggaagattg attcctggaa
     7321 gtggtaatgc aaaatcagtc atatgagcca cattgaagat aataagatta tcccccatac
     7381 cttctatagg aagctctcct tctactgcag catagtaaag atttgcatca gcatcttttt
     7441 gatcgctcat ccagtctctt accttaccct cttcatccca ttgataagtt ttaccataag
     7501 ctgcacggat ggctacctta tgatcttgca aactttcagg tttataagtg attactgctg
     7561 catcacctag agcattaatc gctaaggctg gataagtgga ttgtcttaaa gcattgtttc
     7621 taagattact tcctgggcca tcggttcctg gctgtcttcc tatggttgca atccactcag
     7681 gtgtgatata gtagtcaaga taagctctat ctacataaag tacaggccca cttgttcttg
     7741 tgtttcttcc tgcatctaag tcaagtggac ttccactcca acccatttga gaccaatttt
     7801 tagccataga taaacgacca tagaatttgg ttttatcatt aatatcagca ttcatattta
     7861 aatgaagctc attcatccat ttgttattag cactataatc ttgtccgcta actttatagt
     7921 ttgtatttga aactgctgtt gaaaactcaa gtccaaattt aaccttgctc aaagcagctt
     7981 ggaattctgt ttcatcggcc ctatcattaa gatcagcaag ttcagctttt acagcttcat
     8041 tttgcttagc ttgagcttcc ctttcttttc tgatttgtgc aagttcagct tgaatttgtg
     8101 caagctgttt ttgaagcttg gttatctcat catctgtatt tttagcaaaa agtgaagatg
     8161 aaagaagaca agcacttaaa ataagtgaaa acttagtttt cataatcata actccttgta
     8221 attttgttac atttagcaaa ttaaaattgt gattatagaa aaaaaagttt aaaaaaaaat
     8281 tatacattaa tcatttttag ctagtcaaac ttatgactag ctttgtaaat attgtagttt
     8341 taaaaaagtt ttaaaatttt aaatttttaa attttatcgc aaatttttat gtctaaaatt
     8401 ttatctcctt ggcgtataga gtctaaaact tctaaacttt cttcatcttt tggatcaatt
     8461 tgcccaaaaa cagtatgaac cccatctaaa tgagcttgag ggctgtgaca aatgaaaaat
     8521 tgagaaccac ccgtatcgcg tcctgcgtgt gccatagata aggttccacg ctcatgttta
     8581 tgctcttgat catcacattc gcaaatgatt tcatatccag gcccacctac accattgccg
     8641 tgtggacaac ctccttgtat gacaaaattt gggatcacac gatgaaaatt taaatcttta
     8701 taaaatccct cattagccaa agtagcaaaa ttacaaaccg tttgcggagc ctcatcgcca
     8761 aaaagtttta atttcattgt gcctttttca gtttctataa gagcaaattt gtattcattt
     8821 actttgcttg tgtcgattgt ttttatcatt atttctcctt aatctatatt tgtataaaca
     8881 gcttgaacat catcatcatc ttctaactta tctaaaagtt tttctatatc gctaagctgt
     8941 tcttcgctaa agcttacagg attgtttggt atatactcaa gtcctgcttt tttaagaact
     9001 aaacccttag tctctatagc agaacttagc tcaccaaagg cagtataatc accactaatt
     9061 actaactctt cttcattttg ttctaattct tcaagccctg catcgatcaa atcaagttct
     9121 aattcttcta aatctcctgc aaatttttca agatgaaaaa ccgcttttct agcaaacata
     9181 aagcctaaag atccattttg taaaacttct ccaccatttt tgctaaaaat ggctttaaca
     9241 ttagccacgg tgcgcgtagg gttatcgctc atacattcaa ctataaccaa agctccatgt
     9301 gcagcttttc cttcataatg aatgttttta atatctgcgc tatcttttcc actcgcacgc
     9361 ttaatagccg catctatatt atcttttggc atattatttg cttttgctgt ggctatagca
     9421 cttcttaatt ttggattcat atcaggatca gtgccacctt ctttagcagc tacttgtatg
     9481 gctttagcaa gcttaggaaa aagcttactc attttatccc atctagcctc tttagaagct
     9541 cttcggtatt caaacgctcg tcccataaat tctcactttc tttaaagatt tttaaactta
     9601 aaagtataaa ctaaaaaggc taattaaagc tttaaatggt atgattttac catttatttt
     9661 tagggagaag ctttttgaat atcgcaaaaa aagaactttt tgttgcttgg tttttcttga
     9721 ttgctgctat tgtatttgaa gttttaggta ctagtttttt aaaaatggaa aatcaaattt
     9781 taggctatat atttatggct ttatttatag ctttttctta tttttttatg ggcaaggcga
     9841 ttaaaaaaat tcaagtaggc atagcctatg ctgtatggga acttttaggg attattctta
     9901 tacttttagt ttcttttata gtttttaaag agagtttaac cttaactcaa attctaggca
     9961 ttattctttc tatcgttgga attatcatga ttaatatagg cgaggttaaa gaataatgta
    10021 tatttttatt attgttctat cggcattgtt agatatcgta gcaaatttat tgctaaaaaa
    10081 atcagatggt tttaagaata aaatttgggg cttagctgcg attgtcaatg ctatacttgc
    10141 tttttttcta ctttcttttt ctttaaaata tgttccttta agcatagctt actcaacttg
    10201 gggtgctata ggcatcatag gaacttgtct tggtggatgg attttatata aagaaaaatt
    10261 aaacaaaata ggaattttag gtatcattat cgtgataata gcagtatttt tgctaaatta
    10321 ttaaaacagc aaaatgctgt tttaatgttc cattttgttt tttacttcaa tacccattaa
    10381 agaaaatgcg gttttaatac taagagcaac caaagaaaat aatttaagca aatcattttc
    10441 atttgcagag cctacaactt tattttcatt gtagaattta tgaaaatttg cagctaaatt
    10501 tttaagataa tcaggaattt tttgcaaagc tctagcctca aaagcatcgt ttaaaacagc
    10561 ctttaaattc aaagcttcaa aaagcaaatt tacgccatct tgatttaaac tttgtaaatc
    10621 agctttcatt acatcatcga tttttttacc agctttagca aacacttgat gaattctagc
    10681 gtgtgcatag ttgatataat acacaggatt agaactatct tctttttgca aatcactaat
    10741 atcaaattcc aaatgcgtat cgcatttttt gctcaaaaag atataacgca aagcatcact
    10801 tcctatctca tcaaccacat cgctcatcaa gataaaattt cctgctcttt tactcatttt
    10861 ataaggttct ccatctttaa gtagggaaac catttgtgct aaaataatct caagattatt
    10921 agagtcaaat cccaaaaatt ccatcgcagc tttcattcta gggatataac catgatgatc
    10981 tgctccccaa atattgatac atttatcata gcctctactc attttatcct tatgataaac
    11041 tatatccgct gctaaataag tcccacggcc atcttcacgg ataataacac gatctttttc
    11101 atctcctttt aaagacgaag caagccaaat tttaccttct tgctcgtaaa ttcctttatg
    11161 ctcttttaaa gattctaaag ttgcatttaa agcatcataa tacgatcttt cgcttacata
    11221 gttgtcaatt ttaatctttg cttgttctaa attttgttta atcaaaacaa gcattttatc
    11281 ttttgcccaa tcagccaaac tagggatatt ttcttcgcta aaaaattctt taccaaattt
    11341 ttcaaaagct tcttttgcta aatccgctat atactcgcct ttgtaatatt gctctggata
    11401 ttcaacattt tcatgaagta tactttcttt cacacttagt aaaatagaaa gccctagtaa
    11461 ataaatttga ttacccgcat cattgacata gtattctgta ttaaatttat agcccaaatg
    11521 tcttgcaagt cttgttaagg tgtctccaaa aacagcgcct cttgcatgtc ctatgtgtaa
    11581 aggcccagta ggatttgcac tcacatattc aagcaaaaaa ctttcttgtt ttttttctcc
    11641 tttagtaaaa tcatttggat ttgtcaaagc ctgatttgca agttcattta aaaaagtttt
    11701 ggaaattcta aaatttaaat acccatttac agcttcaact gattcaaaac aatcatgatt
    11761 ttgaaatttg ctcgctaagt cgctagcgat caacataggg gattttttta attccttagc
    11821 cagtaaaaaa gccaaagggg tagcaaaatg tgctaaattt ttatcctttg gattttcaag
    11881 cgcaaaatca cactctaaaa tctttttaat ttcattaaaa ataatacttt tcaaaagact
    11941 aaaccttaag ctttttttgt ttcgtctata cttgcatcag catttgtatt attagttgtg
    12001 tttttgtttt cttctatttt ttgagtattt tttgctactt catcatcatt attcatttca
    12061 tctttaaaag ttttaatacc tttgcctaaa ccctttgcaa gttctggaat tttttttgct
    12121 ccaaaaagca atacaacaat caataaaata atcaaccaat gacttggact tgaccaacca
    12181 cccattttat tctccttcat tccaaatatt ttgaatttgc cctagattct gccctttggt
    12241 tctaaattta tgggcgatta aaatcgctcg caatgcttca taactttgct ttaactcatc
    12301 gttaatgata agataatcat actcgctaag ctctttcatc tcatcactag cgttttgtaa
    12361 tcttttttct agttgtatta ttgtatcagt atttcgctta ataagtcttt tttttagctc
    12421 atctttattt tttgtagtaa taaaaacaga aacaatctta tcagccattt tttttctggc
    12481 tattttaaat ccttgcacat caatatcaaa aacaactatt tttccattat ctaaagcatc
    12541 ttgggtgtgc tttaaagaag taccataaaa attttcatgc actctagccc attctagaaa
    12601 atgatcacta tctataccct tttgaaattc ttcatgagat ataaaatgat aatgcactcc
    12661 atttttttca ccctctcttg gcttgcgagt tgttgaagaa atagaaaaat aaagctcatc
    12721 tttaaattca tcaaaaagtt tttttaaaag agttgatttt ccagcaccac taggacctga
    12781 aatcaacaaa acaaaacctt gcaatttcaa tcctctttaa aactaatgtt tatatttata
    12841 ttcatattca tacccttaag agcagctttt aaggtatcat ctttaatact tgaagtgatc
    12901 gctcctgcta tgctttggct aagctcatta actatctctt cgctattatc atctttagtt
    12961 acatcactta ctataggctc ttcatttttt tctaagattt cctctccaag agcttcttgt
    13021 atatcacttt ctttcaatgt atcaaaatca cttatattta aatttggcac aaccacttcc
    13081 tcttcatttg ttcctaattc tttatcgtct aaaattggtt catctttaaa atcttctaag
    13141 accttgctac tattgtcact atcaatacca taatcaagct catcaagttg agctagttct
    13201 tctttgattt gatcttgagt actcaaattt gaagtaaaat catccatttc atcttgaaca
    13261 tcttcttcca caacaggagc aaactcctct aaaacttcct ctgattcttc attatctttt
    13321 gcttgaccta aaaattcagc atcctcagga agatcatcaa aatccatttc tttttcttgc
    13381 tcttcaacca caggaagatc atcaaagtcg cttatattag cttgtaattc tttgttat
//
LOCUS       DARGEX010000044        13385 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.044, whole genome shotgun sequence.
ACCESSION   DARGEX010000044 DARGEX010000000
VERSION     DARGEX010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.044"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1141
                     /gene="ccoG"
                     /locus_tag="SF010_000987"
     CDS             <1..1141
                     /gene="ccoG"
                     /locus_tag="SF010_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8229924.1"
                     /translation="GRIWCAWSCPQTIFRVIYRDIIQTKFLKIRKNINNKQKEYERQY
                     FKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQNPGEHLLLLGILFCASLLFTLD
                     ITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRGGLIYDGHTKLHKKPPEGECIG
                     CEACVSICPTHIDIRKGMQLECINCLECADACSKVQSKFNRPSLINWTSAKAIETRSK
                     VHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNINRSSELYNISNVKGELVISNAY
                     TFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFKLKAGEQVKKIVVIRATKNLAN
                     NDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTLIKDKNELK"
     gene            1128..1760
                     /gene="cmeR"
                     /locus_tag="SF010_000988"
     CDS             1128..1760
                     /gene="cmeR"
                     /locus_tag="SF010_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG8229925.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINARLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            1855..2958
                     /gene="cmeA"
                     /locus_tag="SF010_000989"
     CDS             1855..2958
                     /gene="cmeA"
                     /locus_tag="SF010_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG8229926.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            2958..6080
                     /gene="cmeB"
                     /locus_tag="SF010_000990"
     CDS             2958..6080
                     /gene="cmeB"
                     /locus_tag="SF010_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG8229927.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            6073..7551
                     /gene="cmeC"
                     /locus_tag="SF010_000991"
     CDS             6073..7551
                     /gene="cmeC"
                     /locus_tag="SF010_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG8229928.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGIEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(7574..7825)
                     /locus_tag="SF010_000992"
     CDS             complement(7574..7825)
                     /locus_tag="SF010_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229929.1"
                     /translation="MNKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDADLDKDF"
     gene            7953..9299
                     /locus_tag="SF010_000993"
     CDS             7953..9299
                     /locus_tag="SF010_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8229930.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSQELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIEDNEFAYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATKFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSTSMEFKAETN"
     gene            complement(9296..9748)
                     /gene="hemJ"
                     /locus_tag="SF010_000994"
     CDS             complement(9296..9748)
                     /gene="hemJ"
                     /locus_tag="SF010_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG8229931.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(9732..10202)
                     /locus_tag="SF010_000995"
     CDS             complement(9732..10202)
                     /locus_tag="SF010_000995"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG8229932.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(10195..11532)
                     /locus_tag="SF010_000996"
     CDS             complement(10195..11532)
                     /locus_tag="SF010_000996"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8229933.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(11626..12651)
                     /locus_tag="SF010_000997"
     CDS             complement(11626..12651)
                     /locus_tag="SF010_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8229934.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            12851..>13385
                     /gene="plsY"
                     /locus_tag="SF010_000998"
     CDS             12851..>13385
                     /gene="plsY"
                     /locus_tag="SF010_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG8229935.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFII"
BASE COUNT         4807 a         2108 c         2009 g         4461 t
ORIGIN      
        1 tggaagaatt tggtgtgctt ggagttgtcc acaaacgatt tttagagtta tatatagaga
       61 tatcatacaa actaaatttc ttaaaattcg caaaaatatc aataacaaac aaaaagaata
      121 tgagaggcaa tattttaaaa aatttcttgg agtgataatt ttttatttta tatctttagt
      181 tgctgttagt aatttacttt ggtactttat tcctcctgaa gattttttca attatattca
      241 aaatcctggc gagcatctac ttttacttgg aattttattt tgtgctagct tactttttac
      301 tttggatatt acctatttac aagaaaaatt ttgtgtttat gtctgtcctt atgcaagaat
      361 acaatctgta atgttcgatc atgatacaat gcaagtgatc tacgatgaaa aacgcggggg
      421 cttgatctat gatggacaca ccaaacttca taaaaaaccg cctgagggag aatgcatagg
      481 ttgcgaagcc tgtgttagta tctgtccaac tcatattgac atacgcaaag gaatgcaact
      541 tgaatgtatt aattgtcttg aatgtgccga tgcttgctct aaggttcaaa gcaaatttaa
      601 tcgtccaagt ttgatcaatt ggacaagtgc aaaagctatt gaaacgcgtt ctaaggttca
      661 ttatttaaga tttagaacga tagcatattt tatagttctt ttaattgctt tactggcttt
      721 aatcatcatg ggaagcaaaa aagaaagcat gcttttaaat atcaatcgta gtagtgaatt
      781 atataatatt tcaaatgtta aaggtgaatt agtcatttca aatgcttata cctttttgtt
      841 tcaaaataca gattctaaac ctcatgaata ttattttaca gcaaatttag aaggaataaa
      901 tgatggaatt gaaatcataa gaccaaacaa accttttaaa ttaaaagcag gagaacaagt
      961 caaaaaaata gttgttatca gggctacaaa aaatttagca aataatgata aaaaagacgt
     1021 aatctttcct ttacatataa aagcttacgc aaaggataat gaaaaaattt cggtttttag
     1081 aaaaagtata tttgtatacc ctaaaagcac tcttataaag gataaaaatg aactcaaata
     1141 gaacaccatc acaaaaagtt ttagccagac aagaaaaaat caaagcagtg gccttagagc
     1201 tttttttaac aaaaggatac caagaaacaa gtttgagtga tattattaaa ttatctggag
     1261 gatcttattc taatatttat gatggtttta aaagtaaaga agggctattc tttgaaattt
     1321 tagatgacat atgtaaaaaa cactttcatc ttatttattc caaaacacaa gaaattgaaa
     1381 atggcacttt aaaagaaatt ttaacttctt ttggtttagc ttttatagaa attttcaatc
     1441 aaccagaagc tgtagctttt ggtaaaatta tctattctca agtttatgac aaagatagac
     1501 atcttgccaa ttggatagaa aataatcaac aaaatttttc ctataacata cttatgggtt
     1561 ttttcaagca acaaaataat tcttatatga aaaaaaatgc agaaaaactt gctgttcttt
     1621 tttgcactat gttaaaagaa ccttatcatc atcttaatgt tttaattaat gctcgtttaa
     1681 aaaataaaaa agaacaaaaa gaacatgttg aatttgttgt aaatgttttt ctaaatggaa
     1741 tcaatagctc caaagcttaa aaaataattt tattaaccaa aattaagata taattagcca
     1801 aaaatttttg taataaaaat tacaattttt aatttaattt ttcaaggcaa aaccatgaaa
     1861 ttatttcaaa aaaatactat tttagcttta ggtgttgtgc ttttactcac tgcttgcagc
     1921 aaagaagaag caccaaaaat acaaatgccg cctcaacctg taacaaccat gagtgctaaa
     1981 tctgaagatt taccacttag ttttacttac cctgctaaac ttgtcagtga ttatgatgtc
     2041 attataaaac ctcaagttag tggcgtaata gaaaataaac tttttaaagc tggagataaa
     2101 gtaaaaaaag gacaaacatt atttattata gaacaagaca aatttaaagc tagtgttgat
     2161 tcggcttacg gacaagcttt gatggctaag gcaactttcg aaaatgcaag caaggatttt
     2221 aatcgttcta aagctctttt tagtaaaagt gcaatctctc aaaaggaata cgactcttct
     2281 cttgctacat ttaacaattc aaaagctagt ctagcaagtg ctagagcaca gcttgcaaat
     2341 gcaagaattg atctagatca taccgaaata aaagctcctt ttgatggtac tataggagat
     2401 gctttagtta atataggaga ttatgtaagt gcttcaacaa ctgaactagt tagagttaca
     2461 aatttaaatc ctatttacgc agatttcttt atttcagata cagataaact aaatttagtc
     2521 cgtaatactc aaaatggaaa atgggattta gacagcattc atgcaaattt aaatcttaat
     2581 ggagaaaccg ttcaaggcaa actttatttt attgattctg ttatagatgc taatagtgga
     2641 acagtaaaag ccaaagctat atttgacaac aacaactcaa cacttttacc aggtgctttt
     2701 gcaacaatta cttcagaagg ttttatacaa aaaaatggct ttaaagtgcc tcaaatagct
     2761 gttaaacaaa atcaaaatga tgtttatgtt cttcttgtta aaaatggaaa agtagaaaaa
     2821 tcttctgtac atataagcta ccaaaacaat gaatatgcca ttattgacaa aggattacaa
     2881 aatggcgata aaatcatttt agataacttt aaaaaaattc aagttggtag cgaagttaaa
     2941 gaaattggag cacaataatg ttttctaaat tttttatcga aagacctgtt tttgcttcag
     3001 ttgttgcaat tatcatttct ttagctggag ctataggtct tacaaattta cctatagaac
     3061 aatatccttc tttaacccct cctacagtta aagtaagtgc aacttacaca ggagctgatg
     3121 cacaaaccat tgcttcaaca gttgcaagtc ctatcgaaga tgcaatcaat ggcgcagata
     3181 atatgattta catggattca acttcaagtt cttcaggaac tatgagtttg actgtttatt
     3241 ttgatatcgg tacagatcct gatcaagcca ccatagatgt taataataga atttcagccg
     3301 caactgcaaa aatgccagat gcagttaaaa aacttggagt aacagttaga aaaacttcct
     3361 caacaacact tgctgcaatt tctatgtatt caagtgatgg ctcaatgagt gcagtagatg
     3421 tatataacta tatcacttta aatgttttag atgagttaaa aagggttcca ggagttggag
     3481 atgcaaacgc tataggaaat cgtaattatt ctttaagaat ttggctcaag cctgatttat
     3541 taaataaatt tggaatcaca gctactgatg taatttctgc ggttaatgac caaaatgccc
     3601 aatacgcaac tggtaaaatt ggcgaagaac ctgtaaccca aaaatcccct tatgtttatt
     3661 caatcactat gcaaggaaga ctacaaaatc ctagtgaatt tgaaaacatt attttaagaa
     3721 caaataatga tggatcattt ttaagactta aagatgtagc tgatgtggaa ataggatcac
     3781 aacaatacag ctcacaagga cgattaaatg gcaatgatgc agttccaatt atgatcaatc
     3841 ttcaatcagg ggcaaacgca ttgcatacag cagaacttgt tcaagctaaa atgcaagaac
     3901 tttcaaaaaa ttttccaaaa ggtttaacat ataaaattcc ttacgataca acaaaatttg
     3961 taatagaatc aatcaaagaa gttgttaaaa cttttgttga agctctaatt ttagttatca
     4021 ttgttatgta tatgttctta aagaatttcc gtgcaacact tattcctatg atagctgtac
     4081 ctgtttcatt gttaggaact tttgctggac tttatgtttt aggttttagt attaacttgc
     4141 ttacgctttt tgctttaatt ttagccatag ggatcgttgt agatgatgcg attatagttg
     4201 tagaaaatat tgataggatt ttacatgaaa atgagcaaat aagcgtaaaa gatgctgcta
     4261 tccaagcgat gcaagaagtt agctctccgg ttatttcaat tgttcttgtg ctttgtgctg
     4321 tttttgtacc agtttctttt atatcaggtt ttgttggaga aattcaaaga caatttgctc
     4381 ttaccttagc tatatctgta accatatcag gttttgttgc tcttacctta acaccttctt
     4441 tatgtgcact ctttttgcga cgcaatgaag gagagccatt taaatttgta aagaaattta
     4501 atgatttttt tgattggagt acctctgtat ttagcgcagg agtagcatat atcctaaaaa
     4561 gaaccattcg ttttgtttta attttttgta ttatgcttgg agcaattttt tatctctata
     4621 aagcagtacc aaattcttta gttcctgaag aagatcaagg tttgatgatt agcattatta
     4681 atcttccttc agcttcagca ctccatagaa caatttcaga ggttgatcac ataagccaag
     4741 aagttttaaa aactaatgga gttaaagatg caatggctat gataggattt gatcttttta
     4801 caagttcact caaagaaaat gccgctgcaa tgtttatagg tttgcaagat tggaaagata
     4861 gaaatgtaag cgctgatcaa attatagccg aacttaataa aaaatttgct tttgatcgca
     4921 atgcttcaag tgtatttata ggcttacctc ctatacctgg attaagtatc acaggcggtt
     4981 ttgaaatgta tgttcaaaac aaaagcggaa aaagctatga tgaaatacaa aaagatgtaa
     5041 ataaacttgt tgctgtggcc aaccaaagaa aagagctatc aagagtaaga acaacccttg
     5101 atacaacttt ccctcaatac aagcttataa ttgatagaga taaattaaaa cactacaatc
     5161 ttaacatgca agatgttttt aacacgatga atgcaactat aggcacttat tatgttaatg
     5221 atttttctat gctaggtaaa aacttccaag taaatatccg cgcaaaaggt gattttagaa
     5281 atacacaaga tgcattaaaa aatatttttg taagatcaaa tgatggaaaa atgataccac
     5341 ttgattcttt cttaacttta caaagaagtt cagggcctga tgatgtaaaa cgattcaacc
     5401 ttttcccagc agcacaagtt caaggtcaac ccgcaccagg ttatacttca ggccaagcta
     5461 tagaagcgat tgctcaagta gcaaaagaaa ctttagggga tgattattcc atagcttgga
     5521 gtggatcagc ttatcaagaa gtttctagca aaggaacagc aagctatgct tttgctttag
     5581 gcatggtatt tgtcttttta atcctagctg cccaatatga aagatggctt atacctttag
     5641 cagttgtaac agctgtgcct tttgcggtat ttggatcatt tttattggta tatttaagag
     5701 gatttagcaa tgatatatat tttcaaacag gacttttgct cttgattgga ctttcagcta
     5761 aaaatgctat cttaatcgta gaatttgcaa tggaagagcg ctttaaaaaa ggtaaaggag
     5821 tttttgaagc agctgttgca gcagcaaaac ttcgttttcg tcctatcata atgacttctt
     5881 tggcatttac ttttggggtc ttgccaatga ttttcgcaac aggagcagga agtgcttcaa
     5941 gacactcttt aggaacaggg cttattggtg gaatgatcgc agcatcaact ttagcgatat
     6001 tctttgtgcc tttatttttc tatcttttag aaaattttaa tgaatggcta gataaaaaaa
     6061 gaggtaaggt tcatgaataa aataatttca attagcgcta tagcaagttt tactcttttg
     6121 atttcagctt gctctttaag tccaaattta aatattcccg aagcaaacta tagcattgat
     6181 aataagcttg gagccttatc ctgggaaaaa gaaaacaata gctctatcac aaaaaattgg
     6241 tggaaagact ttgatgatga aaatttaaat aaagtggttg atttagcact taaaaataat
     6301 aatgatttaa aacttgcttt catacacatg gaacaagctg ctgctcaatt aggtatagat
     6361 tttagcagtt tgttgccaaa atttgatggt agcgcaagcg gaagtcgtgc aaaaacagct
     6421 ataaatgctc caagcaatcg aactggggaa gtaagttacg gtaatgattt taaaatggga
     6481 cttaatttaa gctatgaaat cgatctttgg ggaaaatatc gcgatacata tcgcgcctca
     6541 aaatcaggct ttaaagcaag tgagtatgat tatgaagctg caagactttc tgttatttca
     6601 aatacagttc aaacttattt taatcttgta aatgcttatg aaaatgaaaa tgctcttaaa
     6661 gaagcctatg aatctgcaaa agaaatttat aggattaatg atgaaaaatt tcaagttggt
     6721 gctgtaggtg aatatgaact tgctcaagca agagccaact tagaaagtat ggctttgcaa
     6781 tataatgaag caaagttaaa taaagaaaat taccttaaag ctttaaaaat tttaacttca
     6841 aatgatttaa atgacatact ttacaaaaat caaagctatc aagtttttaa tcttaaagaa
     6901 tttgacattc caactggaat ttcaagcacc atcttgcttc aacgtccaga tattggctct
     6961 tctttagaaa aattaactca gcaaaattat cttgttggag tagctcgcac ggctttctta
     7021 cctagccttt ctttaacagg attattggga tttgaaagcg gggatttaga taccttggtt
     7081 aaaggaggtt ctaagacttg gaatataggt ggaaacttta ctctgcctat ttttcattgg
     7141 ggtgaaattt accaaaatgt aaatttagcc aagcttaata aagatgaagc ttttgtaaat
     7201 tatcaaaata ctttgattac tgcttttgga gaaattcgct atgctttagt agctagaaaa
     7261 actatacgct tacaatacga taatgcacaa gcaagcgaac aatcttacaa aagaatctat
     7321 gaaattgcta aagaacgcta tgatatagga gaaatgtctt tgcaagatta tttagaggca
     7381 cgtcaaaatt ggcttaatgc tgcggttgct tttaataata ttaaatattc ttatgccaat
     7441 tccatagtag atgtaatcaa agcatttggt ggaggaattg agcaaaatga agacacgagt
     7501 aaaaatataa aagaagaatc aaaaaattta gatatatctt ttagagaata gttcgttcta
     7561 ttctctaaat aaattaaaaa tctttatcta aatctgcatc tgtaatttca taaaccttgt
     7621 aaatagcagg caataatttt cttatagcat aatcaaaatg ataaaattgc ttatatacct
     7681 cttctggatt taaattttta gcattcttaa aatcaaatac ttcagtatca ttgattttgg
     7741 caatattttc atcaaaataa gagtaaaact ctgctctttg tttaaacaaa gcatttaaat
     7801 tttgaacaat tttggcttta ttcattttat atccttttta aataatttaa aaacttaatc
     7861 ccatttttta tttaagaaat aaaaaattta ctcctatttt agctaaaaat tgataaagtt
     7921 atatcttaaa tattttaata tataggccac ttatgaattt atttcaaaat ttagctttaa
     7981 aatactctca tactatgatg gaaaaatctc ttcaaaaagg tttcaatgtt gaacttttaa
     8041 aacaacccaa agaaaaaatt ccaaaacaag ataaaagcta tatgctttat gctcatgtac
     8101 ctttttgcca tactttttgt ccttattgta gctttcataa atattattat gatgaaaatt
     8161 tagccaaagt atattttcaa aatcttagag aagaaattaa aatcatgaaa gataaaggtt
     8221 ttgattttac ctccatgtat gtgggtggtg gtacaacact gattaacgaa gaggaactat
     8281 taaaaacctt agaactttgt aaaaaattat ttaatataaa agaaatttca tgcgaaagcg
     8341 atccaaatca tattgatcca aataagcttt ctatgtttaa aggcataatt gatcgtttaa
     8401 gttgcgggat tcaaagtttt gatgatgaaa ctttaaaaaa agtggcaaga tataataaat
     8461 ttggttcatc tcaagaactt caagaaaaaa tttcaaaagc tttaggaatt ttgcctattt
     8521 ttagtataga tcttattttc aatcttccag gacaaagcga aaaacaactt ttaaatgact
     8581 tagaaattgc caaaaattta gccccgcaac aaatcacaac ctatccttta atgaaatcaa
     8641 atcttaccaa agacaatatc gccaaaagtt taggagtgag cattgaagac aatgaatttg
     8701 cttattatca aatcatacgc gaatttttta aagactatac ccaaaacaat ggttggagtt
     8761 tttctttgga aaaaaataaa ctcaatgatg aatatgttag ctctcatcat gaatacctag
     8821 gagtaggtag tggagcattt agcttcttag atggagagct tttaattaat gcatttaatc
     8881 taaatgatta tgccaaattt atacaagaaa aacaaaatgc taatatagcc aaagcttgtt
     8941 ttgataaaaa agaaattatc aaatatgtct ttttaactga aattttttca gggaaaatag
     9001 aaattgataa atttaacaaa actctaaatt gcaatctcga aaaagaactt ttcatagaac
     9061 ttttagggct taaaacaagc ggtgccatca taaaagatca aaatgcttta atcgcaacca
     9121 aatttggtca atatcttttt gtggttttaa tgaaagattt ttacacagga atggatcttg
     9181 tgcgcgcagt atttagagat gataagcgtc ttaaaaataa agattatatc gatatcatga
     9241 aagaaaatat tgatccgctt aactccacta gcatggaatt taaagcggag acaaactaaa
     9301 agggacgaac aaccatcatt agagcgataa taataaacat tatagttgga aattcattat
     9361 aaattctaaa atattttcca cttttagtag aagtatcatt tgctaaagct tttaaacaat
     9421 aataattatg tatatggaaa ataatcaaaa gtgtaacaca ggtaagttta acatgcataa
     9481 aacccgcacc taccattaaa acttccttat gagcatgcaa cattaaactt cctgtgatta
     9541 aagtcacaat cattgcagga gtttgtatat aataataaag ttttctttct tgaattttta
     9601 caacctcaac aaaaccttta ttgtctttat gttcagcatg atacacaaaa agacgaggta
     9661 aataaaaaag tccagccatc caagaaacaa atgccaaata atgcacccat ttaatccaaa
     9721 aataataatc attaatccat tctgtcatct tttttccttt ttttaaatat ttcttgtatt
     9781 aaaatcaaag ccacacttat atttatcatg acatctgcaa cattaaaaat agcaaaatta
     9841 aaccatttat gccaaaaaaa catatccact acacctccat gtataaaacg atccaataaa
     9901 tttgaaacgc cggcaccaag catcattcca aaagctatgc tatgagtttt taaaagtgtt
     9961 ctttgccaaa aaagataaat aaaaagcacg ccaattaaag caagatgtaa atattttaaa
    10021 ttatgttcta aaaaactcaa cattgaaaaa gctacgcctg tatttagagc ataagttaaa
    10081 tctaagtatt cactctgcca tctaaatcct gctaaagtta aggattttac ccattgatca
    10141 agggcaaaaa ccaaaacaaa ggcaccccaa aaataaaaaa taaatttaaa agttttagcc
    10201 atttaaagct ttcttaaaaa actccacaac atttttcatt tctttttcta agagcttaat
    10261 atctctggct tctagtaaaa gtcttatcaa attttctgtt ccagaatagc gaaataaggt
    10321 attaatattt ttattttcta aatctttttt taattctttt aaacctttaa ttttatctaa
    10381 atcttttttt tctgcaattt taagattggt taaaagctga ggataaggtt taacttgacc
    10441 caaaatagaa cttgcagatt ttttcttaga aagcattaaa gcactaaatt gcaaggcggc
    10501 tatcaaacca tctccagttt ttgcataatc gctaaaaata atatgcccac tttgttctcc
    10561 accaaaattt ccaccattgg cttttagttt ttcaagcaca tatttatcgc caacattaca
    10621 agtatcaagt tctataccat gtttatttaa aaactctttt aaagcaccat tactcattat
    10681 agtagccaca acacttgatt gtaatttacc ttgttcttta agataaagtg ccaatacgcc
    10741 caataaacta tccccattag ccacttcgcc tttttcatct acaaccacca aacgatctgc
    10801 atcaccatca aaagcaaagc ccacatctgc acgcaaacgc tttacctcag cagctaaatt
    10861 tgcaggatgt aaagctccac aattttcatt gatattaagt ccattaggtt tatcgctcat
    10921 tactataact tcagcaccta attccttaaa aacagtaggt gctaccttat aagctgcccc
    10981 atgagccaca tctaaaacca cacgcaaaga ctttaaagta agatcttttg gaaaagaatt
    11041 tttaatagaa acaatatacc ttcctataac atcatcaatt cttttcgctt gaccaatttt
    11101 ctccatatct accttagagg cttgtataag cttatcatca aaataaattt cttctatttt
    11161 tttctctata tcttcactga gtttgtttcc atgagcatca aaaaatttaa taccattatc
    11221 ataataagga ttgtgagaag ctgaaatcat aatccctgca tcacaacgca tatcttcagt
    11281 taagaatgca atcgcaggag ttggcatagg accaatttgt ataacattat atcctataga
    11341 agtaagccct gaaacaatag cattttctat catatagccg cttcttcttg tatcttttcc
    11401 tactaagata ttattagtaa tacttttatc tttaaaataa atacccgcag ccattgctaa
    11461 acgcatagcc aaaaaactat ctaaaaattc acccgctttt ccacgaactc catcagttcc
    11521 aaaaagtttc attgcaaacc tttctagcaa aatttaaaga caattataac aaagctaaga
    11581 taaagaaatt taaacaagct ctaaaattag agcttgtttg gaaccttata gttcaggttt
    11641 aggagttttt tcagtagaaa taggaagttg tggataaaca attgctggtt ttgttcctgt
    11701 taaagatttt aagaaagttt caatactttt tgcttcttta tcagaaattt taatgccaag
    11761 ttgcacacta cccatttcct taatagcatc ttttaaattc caaatcgcac cattatgaaa
    11821 atatggagca gtttcagcaa catttcttaa agttggagtt tttaccatgc catttgcatc
    11881 acctttaaaa tcacctaaat ttgcaaattt atatttacca gcaacttcaa acgcttgcat
    11941 attgccacct aaattcacac cattatgaca agctacacaa cctttatcta taaaaagctt
    12001 taagcctttt tgttcttctt ttgttaaagc tttttcatcg ccttctaaaa atttatcaaa
    12061 acgagatgga gtgatcaaag ttctttcaaa atttgcaatt gcatcagcaa tattgtcaaa
    12121 atttacaccg cttttaccat agattttttt aaactcactc acatattcag gcaaagatga
    12181 aattttttct actgcaagtt tagcaggagt tgccatttca ggatcagctt ggattggacc
    12241 tttagcttga tcggctaatg ttcctgcacg accatcccaa aattgagtat tatttaaaac
    12301 tgcattataa actgttggtg aatttaaatg atgaggattt gctgtccatt tatgacctat
    12361 tgcagtactg attccatctg ttccaccaag tcctacatta tgacaggtat tacaagaaat
    12421 gataccactt tttgaaagac gtggttcaaa atagagcttt ttgccaagct ctgctttttc
    12481 aagagtaaat tcactagcct ttactccatt ttgttttaaa atttcatcaa cgcctttttg
    12541 atcttttggt aaggcaacaa gacctgaatt tttagcttca tctataagac ttgcagcatt
    12601 taagcttgaa aaagcaacta aggatgcgat tagcaatgat tttactttca tttataaact
    12661 cctattaaag ataaattaaa ataaaataat aatcatttag agcttaaata aaaataaata
    12721 ttattaaaaa atatttacaa ttaattaata ctaattttat cttaaaaatt attttttgtt
    12781 tatttatttt cataagatat aatttttagt tataaatctt aaaattttaa gatgatttga
    12841 aaaggatatt atggaaaatt taataattta cgcttttata tatcttttag gttcaatccc
    12901 ttttgggcta atcctagcta aattttttgc taaaactgat atcaaaaaag aaggttcaaa
    12961 aagtatagga gcaaccaatg ttttaagagt agtaaaagaa aaaaatccca aactagcaaa
    13021 aaaacttgcc attgctacaa taattttaga ttttgcaaaa gcagctattc ctttactaat
    13081 cttgaaattt cttcattatg atcaagcttt gctttggagc gtcgcagttt tggctatttt
    13141 tggacactgt ttttcaattt acttgttatt tgaaggaggg aaaggcatag caacaggagc
    13201 aggcgctatg atagttttac ttccattgga agtgcttaca gcatttattg tgtgggtagt
    13261 tattggaaaa atttttaaaa tatcttcgct agcttcttta gcagcgttac ttgcttttgt
    13321 tataagttct tttatattta attatgactt agaaattcat acacatgcac ccgttttcat
    13381 tatcg
//
LOCUS       DARGEX010000045        13321 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.045, whole genome shotgun sequence.
ACCESSION   DARGEX010000045 DARGEX010000000
VERSION     DARGEX010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13321
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.045"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..459)
                     /locus_tag="SF010_000999"
     CDS             complement(<1..459)
                     /locus_tag="SF010_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229936.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDD"
     gene            complement(516..1283)
                     /gene="fliR"
                     /locus_tag="SF010_001000"
     CDS             complement(516..1283)
                     /gene="fliR"
                     /locus_tag="SF010_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG8229937.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1270..1905)
                     /locus_tag="SF010_001001"
     CDS             complement(1270..1905)
                     /locus_tag="SF010_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8229938.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(1918..2991)
                     /locus_tag="SF010_001002"
     CDS             complement(1918..2991)
                     /locus_tag="SF010_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG8229939.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2991..3782)
                     /gene="rpsB"
                     /locus_tag="SF010_001003"
     CDS             complement(2991..3782)
                     /gene="rpsB"
                     /locus_tag="SF010_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8229940.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAISEEDFGEEQE"
     gene            complement(3898..5061)
                     /locus_tag="SF010_001004"
     CDS             complement(3898..5061)
                     /locus_tag="SF010_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8229941.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNEVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5189..6313)
                     /locus_tag="SF010_001005"
     CDS             complement(5189..6313)
                     /locus_tag="SF010_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8229942.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6310..7560)
                     /locus_tag="SF010_001006"
     CDS             complement(6310..7560)
                     /locus_tag="SF010_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG8229943.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7562..8065)
                     /gene="petA"
                     /locus_tag="SF010_001007"
     CDS             complement(7562..8065)
                     /gene="petA"
                     /locus_tag="SF010_001007"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG8229944.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8156..9442)
                     /locus_tag="SF010_001008"
     CDS             complement(8156..9442)
                     /locus_tag="SF010_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8229945.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQGKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9443..11302)
                     /gene="mnmG"
                     /locus_tag="SF010_001009"
     CDS             complement(9443..11302)
                     /gene="mnmG"
                     /locus_tag="SF010_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8229946.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KVNRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11390..11887)
                     /gene="cetB"
                     /locus_tag="SF010_001010"
     CDS             complement(11390..11887)
                     /gene="cetB"
                     /locus_tag="SF010_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG8229947.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11905..13284)
                     /gene="cetA"
                     /locus_tag="SF010_001011"
     CDS             complement(11905..13284)
                     /gene="cetA"
                     /locus_tag="SF010_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG8229948.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
BASE COUNT         4648 a         2527 c         1633 g         4513 t
ORIGIN      
        1 atcatcatca aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc
       61 aggcaaatca tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc
      121 atcattgctt aacattggca aatcaataga tgtatgcttg ttcgcatctt tattattaag
      181 caaatttaaa aaatctgtag gtaaaaaagg tttttgtaaa atttgcgcat ctatatcttc
      241 tacattttga tttcgcgggg ctaaaaaaat caatctatcg catttttctt taagaatttt
      301 taaaggtgct ggagtatcac tatctacaac aatcacatca taattaccca aattttcact
      361 ataagcatta agttcttcaa aatcataaga cattttttta gcactaaggc ttacaagtct
      421 tgaaactaca gggttttcat ttaaaagtaa aattttcatc actttaatcc ttaaaaaata
      481 atcgctattt tacgataatt tcatttatcc tttccttagg agaaaaaaag agtttgcata
      541 tgagtaaaaa gttctaaaat taaattttta aaatattgca tcataactag taaaatagca
      601 atcaaaacta caaaacctag agctatcttt ataggatagc caataactaa aagattaaat
      661 tgtggcattg ttttcatcaa aagtccaaaa ataacatcgg ctaaaagtga aattccaagt
      721 ataggaaagc tcatagtaaa acctatgatg aaaatattaa acatacccat atttaaataa
      781 tgcattaaat tctcatgcgg ataaaatcca cctaaactaa tataacccaa agaatgactt
      841 aaaaacaaaa gcattaaatg atggccatca aaagcaagaa aaaacatcaa agcaagtaaa
      901 ttcaaaattt gtgccgtaat aggcatactc gttccagaac ttggatctaa tatacttgcc
      961 atagtaaatc ccatagtaaa agcaatctgc tcacctgcca tcataataat agcaaaaata
     1021 atttgaagca ttaatcctgc tatcattcca aaaatcactt cactaataag ctgtaaaaca
     1081 aaaaaactat ctaaatgcaa agattctaat ctagccaaag gatataaata catagtcaaa
     1141 aataaaacta tagtactttt tattaccata ggaatagaat tatgtgaaaa aaaaggaaaa
     1201 aaaactataa gaccactcat tctagcaaga agcaacataa aagttacaac atttttatcg
     1261 cctaaataat taacaaattc cattgacgtt tatagtataa attttatcac aaaaacttgc
     1321 gagcttacta tcgtgagtta caaaaaataa agccgcatca ttttctttaa cataagaaat
     1381 taaaagttcg ataacatttt tagcattatc aaaatccaaa tttccagttg cttcatcagc
     1441 aaaaataatc tttggttttt tacaaagcac acgtgcgata ctcacacgct gttgttgtcc
     1501 gccgctaagc tttcctattt tttgatgcaa aagtgtatca atacctaacc tttttaaaat
     1561 tttctcatct aaatcttgac ccgataaaac actagcaagt tcgatatttt ctaaagctga
     1621 aaaaccttta aaaagataat gtgtctgaaa aataatacca aaatcatagc ggcgaatttt
     1681 taatctttcg ttttcatcca tctgataaag attagaacct ttaaaaaaaa cttcaccttt
     1741 ttttggaatt aataaagaag aaagtatatg caaaagagta gatttaccac aaccgctact
     1801 cccttgaata gcaatgcaat ctttagtatt taaagtaaga tttaaaccct caaaaagcgg
     1861 ataatcaaaa ctatggctta aattttccgc tcttaagagt tccattttta accgttttta
     1921 aagttgtgca gcaacttcag ccgcaaaatc ttcagttttc ttttctaaac cttcaccaac
     1981 ttcaaagcaa ataaattcta caattttaat ttttccacca aattcttttt ctttttcggc
     2041 aattacttgt tctacagttt ttttgtcatc cagtacataa aactgaccca ttaaagtaag
     2101 tttgctatcg agttgagaat tatcggctat aaagctattc attttacctg gaatgatatt
     2161 atcccaaatt ttttcaggtt taccttgagc tttaagttct tctttgattt tttcttcagc
     2221 ttcttttaaa attgcatcgc ttaattgttt gcgacttgca aattgaggaa ttttatgttc
     2281 aggtttattt ggatctttca gtctacgtct ttcttcattt tctttttcaa gttcagcaac
     2341 caaggctttg tattcatttt caacaaaagt catatccaaa tcttcataac ttaaataact
     2401 tggtctcatt gctgcaatat gcatacaaat ttgtcttaat aaatctcttg attttgaagc
     2461 tacttcagca ctatcacaag ctgcagcgat cacaacacca acacggccat ttgtatgaat
     2521 ataaccattt acaacgccgt tagcacctgc ttttaaagtt gcaaatcttc ttacaactaa
     2581 gttttctcct atagttgcaa tttgactttt taaatattct tcaaatttta caccattaat
     2641 cgtacttgag tgaagctctt ccacactttg caagctattg ctttgaatat gagctgtagt
     2701 atcttttgtt aaagcgataa actgatcatt ttttgccaca aaatctgttt cggaattaat
     2761 ctcacttaca gttgcgcttg taaaatcatc acttactttt acacttacta aaccttctgc
     2821 agcaagtcta tctgcttttt tagcagcctt acctaaacct ttttctctta aaagttgtac
     2881 tgctttatca aaatctccat tagtttcact caaagcattt ttacaatcca tcatccccgc
     2941 acctgtactt tcgcggagtt cttttaccat tgcagcagta atttcagcca ttattcttgc
     3001 tcctcaccga agtcttcttc gcttatcgct tcatctaaaa cttctttttt ctcttcatcg
     3061 gtgatttctt tttcttcatt tgctaaagct tcgccatctt gttctcttaa agcttttcct
     3121 tcattaatcg cttcagccat ttcttggcag aaaagttgca ctgaacgaat tgcatcatca
     3181 tttcctggaa taggataagt taccaaatca ggatcgcagt ttgtatctag tggagctaca
     3241 acaggaattc ttaatctatt tgcttcttga acagcaattt tctcttttac tgtgtcaata
     3301 acaaaaatca tatcaggttg agttttcata taacgaattc cacctaaata agctaataat
     3361 ttttcttttt ttcttgtaag cattaaagct tcttttttag ttaaaagttt aatacttcca
     3421 tcttcttcca ttttttcaat tacttctaat tttctaattg attggcgaat ggtaccaaaa
     3481 tttgtcatca taccgccaag ccatctatga tttacataag gcataccgca tttttcagcg
     3541 tattctttaa tcgctccacc tgcttgtttt tttgtcccga caaaaagtat agtttttcct
     3601 tcggcagcag cgtcacgaac gatattatag gtatatctaa aatatcttaa agttttttgt
     3661 aaatcaatta cataaatacc ttttctctcg ccaaaaatga attttttcat ctttggattc
     3721 cagcgtcttg tttggtgtcc aaaatgcaca ccgcattcta ataaatctct catactaacc
     3781 atgagtttct ccttataaat ttagctttat tcctccacat cccttaattt acacaagcta
     3841 aaaaggattg atgcgtgtga aatgaagcta agattttatc aaatttaagt ttagttttta
     3901 cttatatatg tagtccttgg taagacttag attattattg atttcttttg tgattaaaaa
     3961 ttgaaacaaa tccacgcttc caacacgaaa agcagaggca caagaacgaa ggtacaaatc
     4021 ccacattctt ataaattctt catcatattt ttcccttacc ttgtccaata cttcgttaaa
     4081 attttcatcc cataaatcta aagtttttgc atagtgcatt cttaaacttt ctgctaaaag
     4141 aagatgaaaa tcccactcac tcatagcact tacaacctct cttaaagaag gtaaatatcc
     4201 tcctggaaaa atatatttat ctatccaagc atttgttttt ccttcaaaca tggctaaaat
     4261 agaatgtaaa agcatagaac ctccaggttt taacacttgt tttactttca tgaaataaag
     4321 tcctaaattc tctttgccta catgttcaaa catacccaca gaaacaactt tatcaaaata
     4381 attttcaaat tctaaatctt gataattttg aagtcttatt tctattttat cttcaagacc
     4441 aagttctttt actctttcct tagctttttt acactgctcc tctgaaatag taattccaac
     4501 aaccttaact ccatactttt gagccgccat aatagaaagc caaccccagc cacaacctat
     4561 atctaaaagc ttttctcctt cttttaaatc aagtttttta agagtatgtt ctattttgtt
     4621 aatttgagct tcataaagag tattattagg ctctttaaaa taagcgcaag aatagctcat
     4681 agtatcatca agccaaagct tataaaaatc attacctata tcataatgac ttttgatatt
     4741 tttactttcc tgtttttggg ctattttact caagatatcc tctgtatttt ttaaaaaacg
     4801 cttatttgaa aaataataca aaactttagc tatttcatca taatcacctt ctatttctag
     4861 tttagactcc atataatgtt ttgcaaaaac taaactcgta tcactaaata attttaaaaa
     4921 aggtattttt tctttgaaaa ttaaagaaaa tttagcaggc tgattaccca catgaaattc
     4981 ttcttgatcc caaaatacaa ttctaaaatt tccataattc cattttgaaa gaataaattt
     5041 aatcatttgt ttttcaagca taacatactc caactaataa aaattattat ttgatagtat
     5101 ctcttaatta tgtttaaaat ttgataaaat tgaagaaaag atagaatttt tgccacagat
     5161 ataaaatagt ggcaaaaatt ttataatact aatgtaattt agaccaaaca gaacgcttcc
     5221 aacctatagc aaaaatactt aaaattacaa agaatatcat tacataaatt cctgtagttt
     5281 ttctttcttc ttttttgcta tcacccactt gatcaatata agatacaacc ttagcctgtg
     5341 cagcttctgt taaacctact cttggcatag cggttcctgg aagaagtttt tgagtattat
     5401 taataaaatc atgtaaatat tgctcaccac gagatcttat catcatagaa agatcaggtg
     5461 gaacagaacc taaataagtt tttaaatcat tttgatttga tggagtaaaa aagctatcgt
     5521 atttcatatc atgacaacgt ccgcaagcct caataaaagt tgctttatct ttagcaaatt
     5581 ttatatcttt ttccattaaa gctgcttttt gagcactatt ttccatttta gcatattttg
     5641 cctcaacatc tttcttaata gtagcatctt cattggcttc aaatttaaca ctcacatctt
     5701 taagataagc aattacattg gctatatttg catttgtagc ttcttcactt tctcctgaag
     5761 tatctttatt gtaagctgtc ataataaaag catcaccaaa tttatgatct acttttaaag
     5821 caagcgcagg atgcataatc aaagctgcta aaaatttttc atcaaaaata gcaccagctg
     5881 cactgagatc aggcggtatt actcccatag aagaatcagt aatattagct gctattccat
     5941 cttcttttac accatgacat gcaaaacagt tattttcaaa aaattcttta cctttttttg
     6001 catcaccctt agcaaaatcg atctttgcaa catctgccca aagtgtttca accttgctta
     6061 attcttcttt tgctttttca agttctttgt ttgcactctc tattctttta gcatctcctg
     6121 aagcttgtgc atcttttaga gctaattctt tagcttcaac tatacctttt gcaaaagtag
     6181 tatcttcaac agcaaaatca aaatttgcag gagcaacatg aggcttcatc actgaatgag
     6241 cataaggctc taccccccaa tatacaagtg cagtaaaaac tactacaact aaaaatattt
     6301 ttatttctct cattgtttag ctccttttct ctccataata gtaataaccg gtaaaactac
     6361 aataagtaaa agtaaaaata ctatagaagc gtaaaatcct acccaagcat ttacacctgt
     6421 tggaggtaat tttccataaa cagttaaaac aattaaatca ataagcaata tccaaaacca
     6481 aatgaaaaat aaaggtcttt catgagctgg ttttaccaca tcacttctat caagccaagg
     6541 aagcaagaag aaaatcactt gagcaatacc aaatgcagcc aaacctatat caaaagcttt
     6601 aatacctgca atatcaaaga aaaatcctct taaaacttca taactccata agaaatacca
     6661 ctcaggataa atatgagctg gtgttttaag cgcattagct ggatcaaaat taattggatc
     6721 cattgcaaat tcaaatttaa aacagaccaa ataaaagaag aaaatcataa aaaagcttat
     6781 atacataaaa tcttttgata aaaatcctgg ccaaaaagga atcactttag aaccctttgt
     6841 gtcacctgcc atgtattttt cagcctctaa atcaaagtca agttcttcag aaatttcatt
     6901 attaacatga ggaattctta aagaatagaa gtgaaatgct ataatagcaa tgataactat
     6961 aggaagcaag cacacatgaa gcataaaaaa tcttgttaaa gttggatcag aaaccgcata
     7021 atctccacga atccaaatca caagctcagg gccaataaat ggtatccctc caaaaagatt
     7081 agtgattact tgagctgccc aataactcat ttgtccccaa ggaagcatat acccactaaa
     7141 agcttcagca gaaaatacaa caaacaaaag cataccgcta acccaaatca tctcacgacc
     7201 ttttttataa gaaccgtaat aaattcctgt tagcatatgt atgtatataa tcaaaaatac
     7261 aacagaagcg gcaacaccat gcatgtgacg ccaaagccat ccatagtcca cctcttgcat
     7321 aatagtctta ttcacactat caaaagcaag tgcagtatct ggtttataat acatcacaag
     7381 taaaagtcct gtaacaaaaa gcactgcaaa aagagtggtt aaaataaccc ccattgccca
     7441 aagaaagtta atttgctttg gtatccaata ttttaccatt aaaacatcaa gcagtttatg
     7501 taccgcaagt ctttgatcaa gccaatctac aagaccatta gcttttctaa tttgtgccat
     7561 cttaagcctc cgctatcatt tttttatatt caggaccctc ttcacctaaa acaagcttgg
     7621 ttccatcaat tttaaaagga ggaatttcaa gaggctttgg aggaggtcca aagacatttt
     7681 ttccacttgt gtcaaattct ccaccatgac aggcgcattt aaacaattgc tcacttggtt
     7741 ggtaagcagg tatacaaccc aaatgcgtac aaagtcctat aaccacagta taagctgcgt
     7801 tatctaccac aacatcacgt ttttcatctt ttggcatact cgcatctttt tttaatataa
     7861 aaataggctt tttacgccat tctatagttc taagctctcc atcttgcatt cctgataaat
     7921 ctactgtagt aaaacctgca gctttaacac ttggaagcgg atcccaagtt tttttcatcg
     7981 caacaagtga gaaaacaccg cctacagcag ctacgcttcc aaatgcaaag cccataaagc
     8041 ttcgtctact ctcagatgta gccataactt gctcctttcg attttatttt ttaaccaagt
     8101 taaaagttta tcgaaattaa aataaatttt ttctttgttt aacaagtttt gatatttaga
     8161 caataagagc aaaaagagaa aaaacaagca caggtaaagt tatcaaaaag ccaaatttac
     8221 aatattgcca aaaagaaata ttaatgcctt ttctagccaa aactccaagc caaagcaaag
     8281 ttgctaaaga acctattggc gtaagttttg gacctatatt tacacctaaa agatgtgcat
     8341 aaatcatcaa agaatcaaaa gaaaaattct caaaatattc ttttaatgcc aaatctccga
     8401 ttaaaaccat aggcaaatta ttaaacacag aagatccaaa agctgaaatc aaagccacac
     8461 caaaaattcc actcttatct tgcatcaaaa aagcatagct tttaaccaaa atttcactca
     8521 cacctatttt atgtaaagca aaaaccacca tataaagccc aaaactaaaa agcaaaactc
     8581 cataaggtgc ttcaaaaaga attttaatac tttttttacc ttgaattttt aaaataataa
     8641 gccaaaaaat tcccgcccaa agcaaagcaa aaaaacttat tttaatatta aaaatttcac
     8701 ctataaaaaa actgataaca aaaagaaata aaaatactat gcaaagaaaa aacaatttca
     8761 atgaaatttg ctcttttttg attaatttaa attcaagcct tttaggtaaa actctcacat
     8821 aaagcacaaa aaccgtaact atagtagaaa gcaaaacaaa aaaatttggc aaaaacatat
     8881 ttttagcaaa ttctaaaaat tctatcttaa aataatttgc tgtgatgata ttggttaaat
     8941 ttgaaataac caaagcgttt gaacttgcat cacataaaaa agaaaggcta agtaaaaaag
     9001 aacttaaaat aaaagcatga tttttacaat ctttaagagt tgaaaataaa gctataataa
     9061 taggtgtaat gattaaaatc gctccatcgt tagcaaaaaa tgcagaaaga aaaaagacaa
     9121 aaatcaacaa aaataacatc aatttttttg tgctgatata aattttacct tgatttttct
     9181 ctctagaaaa atgcaaaatt ttactcgcaa taaaatcaaa aaatcccaaa gcttccaagc
     9241 taaaagaaag aataatcaac ccaaccaaag ttaaagaact atcccaaacc aaagaaaaaa
     9301 caaaataagc atctttaaaa tctaccaatt gaaaaataaa aacaaaaaaa gcccccaagc
     9361 tagaaaatac ccaaataggt aaattccatg gacgccaaaa aagtaaaact aaagtagata
     9421 aaaaaataaa aaaagcaagc atttaagctt ttttcttttg cattttgata taaatttgta
     9481 aaatatctaa cgctgcagga gtgattccac tgatttgact tgcagcaaaa atggttggcg
     9541 gtttatgatg attaagtttt tctacaacct cattactcaa accacttaca cttttaaaat
     9601 caaaattttc aggaatttta agctcactaa gatttttcat tttttctact tgagcttttt
     9661 gcatactaat gtaatgataa tactttgcct catttaaaat ctctcttaag gagtaatgat
     9721 ccatagtttc aaatataggg tcaagttttt ttaatttttc tatatcaaaa cttgctcttg
     9781 cgacaatttt ttgaagattg actatagaag aaattttatc ttctcccaaa ctctctaaaa
     9841 aagcattgtt ttggttattg ggcgtgaatt ctttagaaag taaaaattca agtccttttt
     9901 gaagattgtt tgcgatattt tgtatataag taaaatcttg ctcgcttaaa agccccaaat
     9961 catagccata ttttccaagt ctaagtatag cattttcttc ccttaaaagc agtctaaatt
    10021 ctgctcttga agtaaacatt ctataaggtt cttttgtacc ttttactacc aaatcatcga
    10081 ttaaaactcc tatataagct tcatcacgcc ttaaaatcaa aggctctttc atatctatgc
    10141 ttaagcttgc attgattccc gccataaagc cttgtgctgc agcctcttca taacctgtag
    10201 ttccattaat ctgtcctgca caataaagat ttttaatctt tttaagttct aaagtatgct
    10261 taagttcagt tggctctata tagtcatatt ctatagcata accaaaacgg gttattttag
    10321 cattttcaaa accctttaca gaacgcaaca tttgagtttg tacttcataa ggtaaagaag
    10381 tagaaaaacc attgatataa tactccgtcg catcgatagt ttgaggctct ataaaaagat
    10441 gatggctttc tttgtcgcta aaacgattga ccttatcttc tatagaagga caataccttg
    10501 gccccacacc ttcaatctgt cctgtaaaaa gtggggcacg ataaaaatta ttcttaataa
    10561 tctcatgtgt agttgtatta gtgcgtgcga tataacaagg aagttgagta ggattgaaat
    10621 ttcttgaacg aaaactaaaa gctttaggat ttacatcacc atcttgaatt tcaagcacgc
    10681 taaaatcaat gctttttgca tccactcttg ggcaagttcc tgtttttaaa cgtcccattt
    10741 ttaaacccaa agtttgcaga taatttccta aatttaccga agcaagctcc cctacccttc
    10801 ctgcttgaag tttattttca cctacgtgaa taagtccatt taaaaaagtt cctgttgtta
    10861 ggatgacttt tttggcaaaa tatatatttt ctaaatttgt ttttacgcct ttaacttcat
    10921 cattttctac gattaaaaca ctcgcttgtt cttgagaaat ttctaaattt ggaagtttta
    10981 aaagtttatt acgtgcaatg atacggtatt tatccatatc aatttgtgcc ctacttcctt
    11041 gaacggctac acccttactt tcatttaaaa tgcgaaattg tatccctgct tcatcggtga
    11101 tttcacccat aagaccaccc atggcatcaa gttcttttac caaatgccct ttagcaagtc
    11161 cacctatggc tggattacaa cttgccgctc ctatttgctc aatcaatgta gttaaaagta
    11221 aggttttttt acccattcta gcagcagcag cacttgcttc aacacctgca tgtccaccac
    11281 ctataacaat gacatcaaac atattttgcc ttgaaaaatg tgaattttta aaagaaagat
    11341 tatataatat ttagacttaa aacaaactcg ttttaagtct aacaaaaatt tatttagctt
    11401 cttgaagaga gaaaattaac tcattataag ttttatctgc atctttgcag aaatttttaa
    11461 gcatctcaac acccttattt aagccttgtt gctgttctgc tcttaaaaga tcgctataaa
    11521 gactttctat tgtagaaata gcgcttttat ttggcatacg acgaacggaa taatagccta
    11581 tgatattatt attaacatct attgatgggg ttacatttgc aaaaacccaa tagtaattgt
    11641 tatctttggt tttatttttt acgtaagcaa aaatttcttt gccttctttc atataatccc
    11701 ataaatattt aaaaacagtt tttggcatct cttcatgtct tactatgtta tgaggtttat
    11761 ttaaaacttc acccatggta taacctgcat actttaaaaa atcatcattt gcataaacta
    11821 ttttaccttt taaatctgtt ttagaagtaa ttaaactatc ttcttgtaaa aaaatttctc
    11881 ttgacatttt cccaccctct taatttatat ttttaatttt gctaagattt cagcacttct
    11941 ttgctctagt gatttaatat catttacaat cgcatcataa gctttttgat cgatataatc
    12001 ttgacttgat tcttctattg cttttttagc gttatctttt ataaattctt tagctaaatt
    12061 taactcagtt tcagaactaa gctcattaat aacaccttga gctctctcat cttgacaaag
    12121 attagaaatt ggatctacac tttcaagatt gaaattttga gccccattta aatttaaata
    12181 tatatttgat ttataaagaa tatgatcgat tttaaccaca gacaaaatca atctctttgc
    12241 aaaggatcca aaattaacac caagagcact actattttct tctagacgtt taaaagcttg
    12301 agaaaattta ttaattcttt cttcagattc actaacaatg ttaaaaactt gctcactgcc
    12361 actttggata tttacaaaat cttgttgcat agtctgaatt gcaatagaaa tttcgcttgt
    12421 agatctttga gttctttctg ctaactttct aacttcatca gccacaaccg caaagcccct
    12481 accatgctct cctgcacgcg cagcttcaat agcagcattt aaagctagaa gattggtttg
    12541 atcggctata tcacgtatta cttcaaccac tgaagtgata ttttgtgaat tagccacaaa
    12601 agtttgtact gtctccttgc tcgaatttac aacatccatt aaagaaccca tagcactttg
    12661 aagagaatcc acctctgaac cattttctgt agctgtatga gaaatggcat ccactgtatc
    12721 atatacattt ttcatcatgc taatatcttg atttaatgag ctagaaattt gagacatgtc
    12781 tttattttga tttccaaggc ttaaatccat taaagttctt gataaagcat ttttaaaagt
    12841 agatcttgct gtcacttcta tgtttgctaa agctttattt ataaattcga tattatgagc
    12901 aaaaattcct tttaaacctt caggcaaagc cttgcgataa aattcacctt tttgagaaca
    12961 agaaatagaa gtattaattt cccttaagta agcttctagc ccatcaatag tattgttaag
    13021 attatctgct atttcggcta attttttgct ttttgttttt acatagatga ttctattgtc
    13081 gaaattaccc tcctttaact ctctacaaag aaccaaaagt ttatctatca ttatttgctc
    13141 atctttgtgt tgtctaagca aataaatcat taaaacagcg attaaaacaa aaattatcgc
    13201 tccaacaaaa atatgaataa aaatgacacc taaaacaccg ataacactta gaaaaatagt
    13261 taacaataat ccatttttca ccataaattt accccttttt attgaaaatt ttttgaagtc
    13321 a
//
LOCUS       DARGEX010000046        12610 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.046, whole genome shotgun sequence.
ACCESSION   DARGEX010000046 DARGEX010000000
VERSION     DARGEX010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12610
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.046"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(128..937)
                     /locus_tag="SF010_001012"
     CDS             complement(128..937)
                     /locus_tag="SF010_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8229949.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     TFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLDFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYYDKKKSNELIRKLSLDFENDTFHQKLFEVLKKEEMDLKNRI"
     gene            996..1946
                     /gene="waaF"
                     /locus_tag="SF010_001013"
     CDS             996..1946
                     /gene="waaF"
                     /locus_tag="SF010_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG8229950.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLV
                     HLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI"
     gene            complement(1932..2696)
                     /locus_tag="SF010_001014"
     CDS             complement(1932..2696)
                     /locus_tag="SF010_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEG8229951.1"
                     /translation="MKVFIINLERSLDRKEHMKKQIQKLFEKNPSLKNKLEFIFFKAI
                     DAKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDV
                     EFSDEFLIMGQEYIDELLKSKYEYIRLCYLFDKRLYFLSEGGYYLSFEKLAGTQGYVL
                     QVSAAMKFLKYAKNWIYAVDDYMDMFYKHNVLNIVKKPLLLKHDCRKESSISQARRLF
                     LKAKFYRKIIREIFRLYRNILKLSYTFYIKKKLDIS"
     gene            complement(2696..3256)
                     /gene="gmhA"
                     /locus_tag="SF010_001015"
     CDS             complement(2696..3256)
                     /gene="gmhA"
                     /locus_tag="SF010_001015"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8229952.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSLNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(3253..4638)
                     /gene="rfaE1"
                     /locus_tag="SF010_001016"
     CDS             complement(3253..4638)
                     /gene="rfaE1"
                     /locus_tag="SF010_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG8229953.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFNEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(4631..5584)
                     /gene="rfaD"
                     /locus_tag="SF010_001017"
     CDS             complement(4631..5584)
                     /gene="rfaD"
                     /locus_tag="SF010_001017"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG8229954.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(5585..6103)
                     /gene="gmhB"
                     /locus_tag="SF010_001018"
     CDS             complement(5585..6103)
                     /gene="gmhB"
                     /locus_tag="SF010_001018"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG8229955.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLVLVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            6227..6529
                     /locus_tag="SF010_001019"
     CDS             6227..6529
                     /locus_tag="SF010_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8229956.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(6552..6758)
                     /gene="ccoS"
                     /locus_tag="SF010_001020"
     CDS             complement(6552..6758)
                     /gene="ccoS"
                     /locus_tag="SF010_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG8229957.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(6755..9112)
                     /locus_tag="SF010_001021"
     CDS             complement(6755..9112)
                     /locus_tag="SF010_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG8229958.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCFPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            9221..10519
                     /gene="rho"
                     /locus_tag="SF010_001022"
     CDS             9221..10519
                     /gene="rho"
                     /locus_tag="SF010_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG8229959.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            10523..12052
                     /locus_tag="SF010_001023"
     CDS             10523..12052
                     /locus_tag="SF010_001023"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG8229960.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKTTDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTICVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPSPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKVL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(12049..12273)
                     /locus_tag="SF010_001024"
     CDS             complement(12049..12273)
                     /locus_tag="SF010_001024"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8229961.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTTRLVTYMFLALIFISLKND"
     gene            complement(12388..12567)
                     /locus_tag="SF010_001025"
     CDS             complement(12388..12567)
                     /locus_tag="SF010_001025"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8229962.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDIKPDLFR"
BASE COUNT         4535 a         2327 c         1548 g         4200 t
ORIGIN      
        1 atcgtaagaa tttccattaa acctataccc ttatagcctt taggagtata ccaaaaactt
       61 gaaatttcag tcattgttag ccttttaata ttaaaaatat aaaaacttaa ttatataaaa
      121 tctaatctta aattctattt tttaaatcca tctcttcttt ctttaaaacc tcaaatagct
      181 tttgatgaaa ggtatcattt tcaaagtcta aagaaagctt tcttataagt tcattacttt
      241 tctttttatc ataataattt tgatttaaaa tttctttatt tttattctca tatcttccat
      301 ttggattaaa ttcataatga taaatgcaag ttttaaaaac agctattttc tcacaaaaca
      361 taaaataaac ataacaaaaa agcacatctt cgccataact taaacgctca tctattttaa
      421 ttttctcaaa actttttaag atgatatctt ttctaaagca cttcgcccaa accgaccagc
      481 aaaaatgcct ttgtttactt aaaaaatcta aaaattcctt ttgattaaaa acttcatctt
      541 gtttaaaacg ataaaattgt ttggttttta ctctatgcac aaaggcatca aaacaaagca
      601 aatcaaaacc ttttttcatc tctttaaatg ttatttcaca agcatcgagt gttaaaaaat
      661 catcactatc taaaaacatt ataaaatcag aactagaatg caaaaccccc aaatttctac
      721 ttgcaaaagt gcctaaattt tcttcatttt gaaagatttt tatccttgga tcttttttgg
      781 caaattctaa aaccatattt aaactattat ctttactttt atcatcgata atcaaaattt
      841 caatatcttt taaagtctga tttatacaac tttgtaaagc tcttgagata aaatcgcaag
      901 aattaaaaag cgggattatg atagaaagtt gtggcatatt tttcctaaat tttgttaaaa
      961 taataaaaac aattctatca aagtttagga aatttatgaa aatttttata caccttccca
     1021 cttggctagg cgatgcggtg atggcttcac ctgctttata cgttataaaa gaacatttta
     1081 aaaatgccca atttatcctt tatggatctt tggtttccac agcacttttt aaagaatttc
     1141 ctaattctaa aatcatcata gaaaataaac aatcccgcta caaacaagcc ctatctttac
     1201 gcaaagaact tggtaagatc gattttagct ttgcttttag atctgcgttt tcttctaaga
     1261 ttatcttaca tattcttaaa acaaaacaaa gatatttttt tgacaaaaac aagcacaaag
     1321 aagaacatca agttttaaaa tacctttatt ttatagaaaa ctcacttcac ataaaagctc
     1381 accttaaaga cttaaaactt ccctttaagc taaaatttca aagccctctt gtcttaaaaa
     1441 atggcaaaaa aattctagga ctcaatcctg gtgcaagctt tggaagtgca aaaagatggg
     1501 atgcgagtta ttttgctaaa gtggctttaa atttcagcca aagtcatgag attttaatct
     1561 ttggcgcagg aaaagccgaa caagaacttt gtaatgaaat ttatcaaatt ttaaaagaac
     1621 aaaacataaa agtaaaaaat ctttgcaata aaactaccat caaaaccctt tgtcaaaata
     1681 tcgctttttg cgatcttttc atcacaaatg acagtggccc tatgcacata agtgcagttt
     1741 ataaggtaaa aaccgtggct atttttggcc ctacaaaatt tactcaaacc tcaccttggc
     1801 aaaatgaaaa cgcaacatta gtgcatttaa atctagcttg tatgccttgt atgcaaaaaa
     1861 cctgcccttt aaaacaccac aaatgcatga aagatttaaa gcctgaagtg attgtaaaag
     1921 cgattcaaaa tttaactaat atctaatttt ttcttaatgt aaaaagtata agatagtttt
     1981 aaaatatttc tataaagtct aaaaatttct ctaataattt ttctgtaaaa tttagctttc
     2041 aaaaataaac gtctagcttg agaaattgaa ctttcttttc tacaatcatg ttttaataat
     2101 aaaggctttt taactatatt taacacatta tgtttataaa acatatccat ataatcatct
     2161 acggcataga tccaattttt agcatattta agaaatttca ttgcagcact tacttgcagt
     2221 acataacctt gagttccagc aagcttttca aaacttaaat aatatccacc ctcgctcaaa
     2281 aaatacaatc ttttatcgaa caaataacaa agtcttatat attcatattt gctctttaat
     2341 agctcatcta tatattcttg ccccattatt aaaaattcat cgctaaattc cacatcatct
     2401 tctaggatga ttataggctc atcaagcttc acacattctt gccaaagttt ataatgacta
     2461 gcaaaacaag ctttttctcc atcagaaagc tctctgccca gcacccaaga accccaccaa
     2521 ggaaaatgat ctttaaattc caaatgttct ttatttttag catcaatagc tttaaagaaa
     2581 ataaattcta atttattttt taaactagga tttttttcaa aaagcttttg aatttgtttt
     2641 ttcatatgct cttttctatc taaagaacgc tctaaattta tgataaaaac tttcattaaa
     2701 aaccctcatc gatgatctga caaagcgtgt gtatgattaa aatgtgcatt tcttgaattc
     2761 tagccgtatc atcgcttggc acaacaagat tatgatcaca aagcttattc atcattccac
     2821 cgccctttcc actaagccct aaacaaagca tattaagttc ttttgctttt ttaaaagctt
     2881 ctaaaacatt gagacttttt ccactggttg aaatgccgat taaaacatca ttttcatttc
     2941 ctaaagcctc cacttgtctt gaaaaaacaa actcaaaacc atagtcattt cctatagcac
     3001 taagcgctga agtatcggtt gtaagcgcta tacctgctaa agccttgcgt tcttttttat
     3061 aacgcccact aagttcagct gcaaaatgct gtgcatcagc tgcacttcca ccatttccgc
     3121 aaattaaaat tttaccacct tttttaagac attcacataa aagctcgcct attttagcga
     3181 tttgtccttt taaaatttca ctttcttgaa cgattttttg atgttcttgc cattcttttt
     3241 ctactaaatt tatcattttt tatccttaat cttttctata atcttactcg tactaaatcc
     3301 ttcttcaaaa tcgattaatt caactcttga aatcaaattt gaacctacaa caagcttatc
     3361 tttataatca gctcctttaa ccaaaatatc aggctttaaa aagcttataa gttctaaagg
     3421 tgtgtcttca tcaaaaatca ctacaaaatc tacaaaataa aaagctgcca acatacaagc
     3481 tctttgaaac tctgaattta caggacgact ctcacctttg agtcttttca cactcgcatc
     3541 tgagttcaaa cctacaatca aaacatcgcc caatctttta gctttctcaa gatattttat
     3601 atgtccaaaa tgcacgatat caaaacaacc atttgtaaaa acaatctttt tatcattttg
     3661 ttttaaaagc gttaaaagct cttctttatt tttgatcttt ttctcaaaac tcatactttt
     3721 aaaacttcta atctcatcaa aactcacact cacactacct attttactta ctacaacggc
     3781 tgcagcttca ttggcaagtt cacaagcttt aaaaatttca atttcatttg ccaaacaaaa
     3841 agccaaaacg gcaatcacac tatcgcccgc tcctgttaca tcataaactt ctaaggcttt
     3901 agcaggtgcg atttttaaac cctcattaaa aagcgcaatc cccgcttctg aaagagtgat
     3961 gatagaataa cgcaaagaaa aatcttcttt taatttttta atcccttttt ctaaattttc
     4021 accctctaaa ttttcaaatt tcaaagcttc taaagcttct tttttattag gcgtgagcaa
     4081 ggttgcaccg ctatatttac taaaatcact ccctttagga tcaactaaaa cagggatatt
     4141 taaagcctta gcctttttta tcacagcctt acaaacctta ggcgttaaaa tacccttagc
     4201 ataatcgctt aaaaccacag ctttaaaatc tttaatcttt tcatcaaaca aagcaataag
     4261 ctcattttca agcaaaatct cacttatgtc ttcttcatct agtcttaaaa cctgctgatt
     4321 gtgcgccata atgcgatttt taaaaggggt tttgcgtcct ttttggatca aaaattctcc
     4381 ttttaaattt tcttgtaaaa atttcccact cttatcatca cccacaacac caagcgcaaa
     4441 aacatcagcc cctaaacttt ttaaatttgc ataaacattc gcagccccgc ctaatctttt
     4501 atcttcctta agagttttag ctaccaaaac aggggcttca ggactgatac gcgaacaatc
     4561 acaccaagtg taattatcca ccataaaatc ccctataatt aaaattttag gtttttgctg
     4621 gcttaaaaac tcaagcattt acttcctttt caaaaagtct ttttatctca tctaaataat
     4681 ctttaatccc ctcttcaaga ctaaattttg gctgataatc ccaagtttga tctagttttg
     4741 cttcagtatg gaattgataa gattttacat aaggatttgg gatatattca caaggcaaat
     4801 cagtctttaa ctctttttgc aaaatatcaa ctatatcttg aaaggttctt gctttaccac
     4861 tgcctacatt ataaaccccg cattttgaat caagggcgat taaattggca ttaataacat
     4921 ctttaatata agtaaaatct ctataaattt gatcacttcc ttcaaacaat cgtggatttt
     4981 ttcctgctaa aatttgatgg ccaaattgca aaaccataga agcggttttg tttttataaa
     5041 attcgccttt tccataaaca ttaaaatatc taagtcctac caaatgagct ttatcgtaat
     5101 attttttcgc taacttatcc atcatcaatt ttgaaaaagc ataaggattt tttggctctt
     5161 catctttacc tacagtttgt ggactttttg catcaccata aaccgaagct gaacttgcat
     5221 aaataagctt tgcattaaga tctatgctaa gttctataaa atctttaaaa gtatttaaat
     5281 tggtttgtaa aaccttagtt tgatcaaaaa ctgtagtgtc tgaaattgct gcttgatgaa
     5341 aaataatctc tggcttaaaa tcttcaatct tttttaaaac tttttcatcg ttaatatcac
     5401 ctgcaaaaag ttctccatca aattcaagta aatttttaaa atgtccaaaa ctttgtaaat
     5461 ttccattttc aaaagtcgca ctgctacgca ttttatcaat gattaaaatt tcatgttttt
     5521 cttgcaaatt taaagccagt tgcgaaccta taaatcctgc accacctgtg attgctactc
     5581 tcatttaaat gtccttttct ttaaaaaaac tcaaaatttc ttttaaattt ttaaattgtc
     5641 taaaaaaatc gccttctttt ttttcttcat ttactaaaac caaagtgcca atattagcat
     5701 ttaaccctgc ttgcatatcg cttagattat ctccgataaa aatagaattt ttcatatcta
     5761 aattaaactc atcttttgct tttaaaagca ttcctgcttt aggtttgcga cattcacaac
     5821 cttctaaatg cggacaatga taaattttat caatttttat accttgttta gtaaattctt
     5881 taagcatata atcacaaagc ttaaaaaaat cactttcctt ataatatcct cttgcaatgc
     5941 ctgattgatt tgtcgctata aaaagcaaat attttttagc taaaaaatat ctacaaagtt
     6001 caaaaattcc atcacaaaat tcaaaatctt ctattttata gacatatttt ttatctatat
     6061 taatcacacc gtctctatct aaaaataatg cttttgtttt cataaaaaac attataatat
     6121 agcttttttg aaaagaaaat aaacattatc tttattttct taagattttt ataaaaataa
     6181 agatatataa tatctggcaa tctaattttt actgaggaga aatcaaatga aaaaattatt
     6241 agtagtttct gctttggcat gtcttggtgt ttctgctttt gctgcagatg gtgctacact
     6301 ttttaaaaaa tgtgcagtat gccatggtgc aaatgctgac aaagtttact taaacaaagt
     6361 tccagcttta aaaactcttt cttctgctga aagacttcaa tacatgaaag aatattcaga
     6421 aggtaaaaga aatgcttatg gtcaaggtgc gatcatgaaa cttaacctta aaggtttaac
     6481 tgaagaagat tttaaagcta tcgaagctca tattgaaact ttaaaataat ttctaaaaaa
     6541 ggctttcctt ttcaagaaag ccttttttta tccaaagctt cttttttacg tctttctaat
     6601 tctatagcat cacgcaaaga atcctcatca tcatttaaag tagtaaattt ataatcatca
     6661 tcaaattgct tatttttaat cccccaaagc aaagttgcca aaatgataaa aaacgctaag
     6721 atagaaactc ctatcatcat catgattata ctattcattc tttaatcctt aaagcattta
     6781 aaacgactat tatactacta aaagacatag aaatagcagc aaataaagga tttatcatac
     6841 ccaaaaaagc caaaggtatg gtgcaagcat tataaaacaa agaaaaagca agattttgct
     6901 tgataatttt aaaggtgttt ttagataatt tgatggcttt ttttaaagaa agcaagtcat
     6961 ttttcaaaag caaaacatca ctactttcta tagctagatc acttccttct cttaaagtca
     7021 ttgaaacact tgcgtatttt aaagctagtg catcatttac cccatcacct acaaataaaa
     7081 ctttgtaatt tttacttaaa ttttctatag ttttcatctt atcttcagga aaacaagaag
     7141 cttgataatt ttgaatttct aactttttag cgattttttc cactgctttt tgatgatcgc
     7201 cactgagtat cattaattct ttcttttctt ttttaagata agcgataagc tcttttgcac
     7261 cttctcttaa aacactatca aactcaaaaa aagctaaaat tttaccttcc ttggcaaaaa
     7321 taaaatgcgt attatcaaat tctttagcca caataccctt ttcttgcaaa aatttagaac
     7381 ttccgcctaa aagcaaccct tcatttaact cagcacttaa acctttagct tgaatactcg
     7441 aatgcttttt aaaatccaaa tttaaatcct tagctccttt ttgctttaaa tataacacaa
     7501 tattttgaga gataggatgt ttagaaagtt ttacaaaatt ataaagctcg tttaaatcaa
     7561 gcgctttatc taaaaaaacc tctttaagtt caagctctat tttggttaaa atacccgttt
     7621 tatcaaatac cacacaatca catttgctta aatcttctat cacgctagaa cttttaaata
     7681 aaatatgctt ttttaaagcc ctacctaaag ccacaagatt gctcactggc gttgctaaag
     7741 ccaaagcaca aggacaagcg ataatcaaaa ctgcaatcgc attgactaaa gaaatttcga
     7801 aactctcttc tttataaaaa aaccaaaaag caaaacaaat aaaagcgatc aataaaaccg
     7861 ttctagaaaa ataagccaaa agactattaa ccaaactttc aagttttgct tttttagaac
     7921 ttgcaagttc taaaagctgg ataatttgac tgagttttga atccttgtaa agctttgttg
     7981 cttcatactc cacacttcca tcaagcacta tacaagctga aaaaatttca tcttcttttt
     8041 gtatgagttt tggggtattt tctccattta aagaagaagt atccacactc atttcaccac
     8101 ttttacaaat cccatcgatt aaaattttat ctccagtttt aagcaaaatt ctatccccta
     8161 aacaaacctt ttgaacttct ttaggagcaa attctttacc attgaaaact aaaacttcat
     8221 tttgtaaaaa atcattaagc ccatctatgg tatctaaagc acgctttttg ctaaacatct
     8281 caagatattt acctataaaa acaaagcaaa ttatcatcgc cacagagtca aaatacactt
     8341 cccctaccct aaaaaacatg gcccataaag aataaacata agccaaactc gctccgctaa
     8401 tcaccaatac atccatattt aaactatgca tttttaaagt tttaaaagca cttttataaa
     8461 aatgagatcc cgtataaaaa agcacaggag aacaaaggat aaattcagca aaatttaaaa
     8521 tatccttagt gtccttatcc ataccgctaa aaaatcctgc gtattttgcc actgctatcc
     8581 acatgatatt catcacacaa gctatagcca caacaagctt agaataaaat tcccttttta
     8641 gtaaatccgc tttttttgaa gccttgctcg catcataagc actcgcttta tagcctatgc
     8701 tttcaataag tcttaaaatt tgcaccaaag aaatactttg ctcatcaaaa acaatgcgtg
     8761 ctttatggtt taaatgatta atatcaagtt ctaaaattcc ttcttgtttg gttaaaattt
     8821 tctcattaag ccacacacaa gctgcacatt ctataccgtg tatcatgaga taaatttcac
     8881 taaatccttc tttggtttta gtgataaact catcataatt tttcatttca ttttgaaaat
     8941 ttacagggct taaagtttga tttccaagct tttcataaaa ctcatctaat ccactttcat
     9001 gcaaaatttc ccaaacgctc tcacaacctt tacaacaaaa aaatttaccc ttatactcta
     9061 tcatttgggc ttgtttataa tcaagtttgc aatgttcaca tttcataatc attctttaaa
     9121 aaaatatttt ttataattat aaacaaattt gacaaaaagt gcattttttt attaaaatca
     9181 cattttacaa aaattattct gctaaatctt acgaggactt atggaaaaag aaaaaaaaca
     9241 acatcaaaga acccacgttc cagtggaagg ttataaaatc gaagaattaa aattattaga
     9301 tttagaaaat ctagttaaaa tcgccaatga atgtgaaatc gaaaacccaa gagaatttcg
     9361 ccgccaagaa cttatttttg aaattttaaa agcacaaaca aaaaaaggcg gttttatact
     9421 ttttacaggg attttagaaa tttcttccga aggttatggc tttttaagag gtatggactc
     9481 taatcttagc gatagtgtta atgacgctta tgtttcaaat tcacaaatta aaaaatttgc
     9541 tctgcgtgta ggcgatatcg ttacaggaca agttagagaa ccaaaagatc aagaaaaata
     9601 ctacgctctt ttaaaaatcg aagcgatcaa ttatctgcct ttacaagaag ccaaagaaag
     9661 acctttgttt gataacttaa cccctatttt tccaacagaa aaaatcaaac tcgaatacga
     9721 tgcaatgaag cttacaggtc gtgttttgga tctttttact cctataggaa aaggacaacg
     9781 cgggcttatc gttgctccac cacgcacagg taaaacagag cttatgaaag aacttgctac
     9841 tgctattgca aaaaaccacc cagaaatgca tttaatcgta cttttagtcg atgaaagacc
     9901 tgaagaagtt accgatatgc aaagatgtgt aaaaggcgaa gtttttagtt ctacttttga
     9961 tttacctgct tataatcatg tgcgtgtagc tgaactcgtg atagaaaaag ccaaaagaat
    10021 ggtggaaaca ggcaaagatg ttatcatctt gcttgatagt atcacaagac tggcacgtgc
    10081 ttataacacc gcaactccaa gcagcggaaa agtcctaagc ggcggggtgg atgctaatgc
    10141 cctacacaaa ccaaaacgct tctttggtgc agctagaaat atagaaaatg gaggctcttt
    10201 aactatagtt gctacagctt taattgatac aggttcaaga atggatgatg tgatttttga
    10261 agaatttaaa ggcacaggaa atagcgaaat agttcttgat agaaatatcg ccgatagaag
    10321 aatttatcct gcgattaata tcatcaaatc aggaacaaga aaagaagaat tactccaagg
    10381 cgtagcaaat cttcaaaaaa tttgggcgat ccgttcagcg atttctcaaa tggatgatgt
    10441 tgaagcgttg aaatttttat attctaaaat gcttaaaacc aaagacaatg tagaactttt
    10501 atctataatg aacgagtaaa aaatgcttca agctttagcg attaaataca gaccaaaaac
    10561 ttttgatgaa cttataggac aaaagacagt tagcgtaagt ttaaaatacg ccctaaatca
    10621 taatcgctta gctcatgctt atcttttttc aggacttaga ggaagtggaa aaacttcaag
    10681 tgctagaatt ttttctcgtg ctttagtttg cgaacaagga ccaagtgata ctccatgtgg
    10741 cacttgcaaa cactgtcttg cagcacttga aggcaaacat atagacatta tagaaatgga
    10801 tgctgcaagc aaccgtgggc ttgaagatat acaagcctta atcgaacaaa ccaaatacac
    10861 cccttctatg gcaagattta aaattttcat cattgatgaa gtacatatgc ttaccccaca
    10921 ggctgcaaat gcacttttaa aaaccttaga agaaccccca agttatgtta aatttatact
    10981 tgcaaccaca gatcctttaa aactcccagc taccgtgctt tcaagaacgc aacattttcg
    11041 ctttaaacaa attccccaga gtgaaatttt aaatcatctt aaagaaattt tacttaaaga
    11101 aaatgttaaa tttgaagaag aagctttaaa atttatagca agaagtggca acggatcttt
    11161 aagagatact ttaaccttgc ttgatcaagc cattattttt tgtcaaaatg aaatcagcat
    11221 tagtaaaact acagatatgc taggattttt agatcctgaa aaaatcaaag ccttttatca
    11281 ggctatttta acaaaagaca aagaaaaagt ttttgcatac ttagaagaac tacaagacta
    11341 tgaagcctca agcgtgatcg atgaaatgct tttttattta aaagaaagtt tttttgcaaa
    11401 aagtacagaa ttttctactt taatttatga aagatttttc cgtattttat caaaagctaa
    11461 aaatatgctt tgcgatgatg atggctttac gatttgtgtt atggctttta tgatgatgga
    11521 agcaagccat ttaaaagaaa ttgatgcaca aatccaagaa atcaaacaag aaaatacaac
    11581 aaatattaca cctaggatca caccttctcc tatcatacct aatcttgaga aaaaaataga
    11641 aaaaaatgct tatgaaatct tgcttgatag tatttatgat agggattttg atcttgcaga
    11701 atgctttaaa caaagcacga aatttattag ttttgaaaac aataccttaa atataagctc
    11761 aaatgcacaa ggacaaaatc gcgatacact caataaaggc tttaaactca tacaagaact
    11821 ttttaaggct aaatttgggg aaaatgctaa aattaatgtg caaaaagtac taacaattga
    11881 tgaaaataag cttcaatcct taactcaaga attaccaaac aatgaaaata aaaacataga
    11941 tattcaaagt tctattaata tgcttaaaga aggggccaaa aaatttgacc cacaagaaga
    12001 tcttaaagag gctcttaaag attgttttgg agagcctagt atagaaaatt aatcattttt
    12061 aagagagatg aaaatcaaag ccaaaaacat ataagttacc aatcttgtag tatcaggtaa
    12121 acctttccaa accttactca tccacattcc aaaccattct gcaacaacta cttggaaggc
    12181 aaaaaaccat aaaatacaca agttaaagaa ataatcccaa aaaatcttag cattatgaaa
    12241 gctttgagca tctaaatttc tagctttaaa catatcataa gcaccttttt tagagctgtt
    12301 aaggcaataa aagtttcaaa aagaataatt gctatatagc ctatatgata aatcacggga
    12361 gaagtaatag ccatataaac tacagcatta cctaaataaa tcaggcttta tatccatact
    12421 catcacatgc gaaacaaatt ggaaattaga attgtaatct gtcacatttc caaaaaccac
    12481 tatacctgct aacgatacaa cggtaagcaa aataataatt tttgaaaatc taatcatttt
    12541 gcttatgcaa aaacattttt gttgcattta tactctttta ataatatatt ttagtaatat
    12601 taattatata
//
LOCUS       DARGEX010000047        12370 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.047, whole genome shotgun sequence.
ACCESSION   DARGEX010000047 DARGEX010000000
VERSION     DARGEX010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.047"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(74..1093)
                     /gene="flgS"
                     /locus_tag="SF010_001026"
     CDS             complement(74..1093)
                     /gene="flgS"
                     /locus_tag="SF010_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG8229963.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(1097..1975)
                     /locus_tag="SF010_001027"
     CDS             complement(1097..1975)
                     /locus_tag="SF010_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8229964.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNQFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     RDENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEIDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            2011..3285
                     /locus_tag="SF010_001028"
     CDS             2011..3285
                     /locus_tag="SF010_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG8229965.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEES
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLDLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(3282..4106)
                     /gene="purU"
                     /locus_tag="SF010_001029"
     CDS             complement(3282..4106)
                     /gene="purU"
                     /locus_tag="SF010_001029"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG8229966.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLVFEDRIFIHNNKTIIF"
     gene            complement(4103..5221)
                     /locus_tag="SF010_001030"
     CDS             complement(4103..5221)
                     /locus_tag="SF010_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG8229967.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(5190..5681)
                     /locus_tag="SF010_001031"
     CDS             complement(5190..5681)
                     /locus_tag="SF010_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8229968.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(5678..5926)
                     /locus_tag="SF010_001032"
     CDS             complement(5678..5926)
                     /locus_tag="SF010_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8229969.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(6005..6178)
                     /gene="tatA2"
                     /locus_tag="SF010_001033"
     CDS             complement(6005..6178)
                     /gene="tatA2"
                     /locus_tag="SF010_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG8229970.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(6188..6526)
                     /locus_tag="SF010_001034"
     CDS             complement(6188..6526)
                     /locus_tag="SF010_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG8229971.1"
                     /translation="MNNLSSVLILAKEECINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(6519..7433)
                     /locus_tag="SF010_001035"
     CDS             complement(6519..7433)
                     /locus_tag="SF010_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG8229972.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(7438..7962)
                     /locus_tag="SF010_001036"
     CDS             complement(7438..7962)
                     /locus_tag="SF010_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG8229973.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVENSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(7959..8741)
                     /gene="napH"
                     /locus_tag="SF010_001037"
     CDS             complement(7959..8741)
                     /gene="napH"
                     /locus_tag="SF010_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG8229974.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(8738..9478)
                     /gene="napG"
                     /locus_tag="SF010_001038"
     CDS             complement(8738..9478)
                     /gene="napG"
                     /locus_tag="SF010_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG8229975.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLTLKADDNYTLRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(9496..12270)
                     /gene="napA"
                     /locus_tag="SF010_001039"
     CDS             complement(9496..12270)
                     /gene="napA"
                     /locus_tag="SF010_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG8229976.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         4178 a         2300 c         1505 g         4387 t
ORIGIN      
        1 tgccttcaat ctaaatatat taaaataata taagcaaaat ctgtttcgtt ttggggtgaa
       61 aagaaaatat ttatcacacc aaaggtaagg taaaataaaa attcttagga tcgctttgaa
      121 aacttaactc tcccttatgg gcgtttatga tttctttaga aagagacaag ccaagcccat
      181 tgcctttaag ttttgttgtt ttaaaagctt caaaaaccaa tttctcatct tttatttcac
      241 aaccattatc atacactctg atgcatattt tttcattatc acaacttgct aaaattttaa
      301 tcataggctt ttcacattcg ctttcttcta tcgcatcaat agcattataa atcaaatttt
      361 gcaaaaccaa accaagaaga gctttatcag cacaaatctg cttatccaaa aaagatattt
      421 caaagtctat ttgagaagtg aaattataag agttaatggc actttcacac tcttctttta
      481 actctaaaag attaaaattt aaagcattga tgtgcacacc cttagtaaaa agtaaagttg
      541 aatttacgat acgctctact ctagcaatag ccttttggat ttcaagaact atatgcttat
      601 ttttaagctc actacgagca aaaagagttg aagcaagcaa agatatagat ccaataggat
      661 ttcttatctc atgtgccaaa tgagccgcta cactacccat gcttgcaagc ctttcattgc
      721 gtttttcatc gctaatatct gtagctgaaa ctatagtttt ttcattatgt gctatgattt
      781 ttaccgcata aaacctacct tcaaattcaa gctcatcacg aattttatca agactaatga
      841 tactaagtaa ttttggattt ttcaaggctt cttgattttg taaaataata tttttttctt
      901 tatctaaaat ccaaagcgca ctaggcaaca cctctataat ctcatcaacc attgcgcgta
      961 aggagttata gttttcattt aaagttttgt attcattttc tattacataa gtttgttcta
     1021 taagactttc taagcctttt tgtagggttt ctttttcatt tgagtctaaa ctttttaaaa
     1081 tactttcatt catttatcat tcctctaata aaatcttaaa atcattcaaa tcaagtaaaa
     1141 gcaaattctg ttcgcatatt ttatcaattt ccttgctaaa accatttttt gagattataa
     1201 tgtaataatt tggagccaaa tttaaagact ttgcttttga ttttaaaaga tttaaaatat
     1261 ttttacaaat ttttttattt ttaaatttaa cttctccgac aaaacacaaa ttttcatctc
     1321 gataataaag atcaagttct aaattcttat cccagtaact ttgcactcca ttgatattga
     1381 attttttctc aagcaattct ctagaaagct gttcaaaaca aaaactttga taaagttcaa
     1441 atttttcttt aatgcattct aaaacttctt tataacgatt ttgcaaaata agcttttcat
     1501 tgggctttaa aaaataaaaa aagaaacgag taaattggtt gctaaatata atcttatctt
     1561 ggacaacata agatcttagt tcttttttga ttttttgtct tttatctttt atttttttag
     1621 cttccttact atactcaagt tttattatac ctgtttctaa aagatattta agtgtagata
     1681 aagctttaaa atgctgaatt tttctattga tagaaaaacg cttgcgattg tttttagcta
     1741 gtaaagtaag agcgtaagaa cttgtttcat ccaaggcgaa ataactttta atttttagat
     1801 aatcatcaag caaaattcgc tctatatttg taaacacatc gtcttcaaaa tttaaaatgt
     1861 ttaatttttc aaaaccttca aacacactat aaaaatcaaa aagcttactt aaagacaaat
     1921 tcttatgcaa atctacaaag ttcttaaatt ttatattttt ccttttataa agcattttta
     1981 tagtataatt ttagcaaatt tttataagga ttgtatttgc aaatttcaga tttaaaaaaa
     2041 gaattgatct taaaaaaagg tattttgcat tttgacttca cagcaagtgc tttagctcta
     2101 aaatgtgtag aaaaagaaat ttcaaaaatt ctcccaacct atgcaaacac acattctgat
     2161 agctctttaa attcttttaa aactcaacaa atttacgaac aagcaagaaa agatataaaa
     2221 aaaagtttat cattagatga aaattttgcc cttatagcct gcggaacagg atcaagcagt
     2281 gctattaaaa aatttcaaga attgatcggc atttacattc cccctcttgt aaaagaaaga
     2341 tattttacgc aaattgataa aaatacctta cctttagtta tcgtagggcc ttatgagcat
     2401 cattctaatg aactttcatt tcgagaaggc ttgtgcgaat gtattagaat tcccttggat
     2461 aaaaatgggg aaattgattt tgattttcta gaaaaaactt tacaaaaaaa caaaaaaaga
     2521 aaaataatcg ctagcttttc tttagcttca aatgttactg ggatattaag tgattacaaa
     2581 cgcatttctg aaatggttcg taaatttaaa gggatagttg cttttgatgc atctagtttc
     2641 attccctata aaaacatatc ttgtcaatac tatgatgcgt tgtttataag ttctcataaa
     2701 ttaatcggtg gtattggcgg ttctggactt ttagctatca aaaaagatct ttgtggaaac
     2761 aagcctagct ttgcagcagg tggaactgtg ggctatgttt ctcgcacttc acaatactac
     2821 ctttgtaatg aagaatcttt agaggaagga ggaacacctg gaattttaca actcattcgc
     2881 gctagcttag cttttaaaat caaagattct ataggggtta aaaatataga aaaaaaagaa
     2941 gaaattttaa aagattattt ttttgaaaaa ctaaaaacta tacctaattt aattttatac
     3001 gcaaagaatt taaaaacccg attgcctatt tttgctttca atatcaaagg aatttctcct
     3061 tttgatatcg cttacgaact tagtaaaaaa taccacatag aaacacgcgc tggatgtgct
     3121 tgtgctgggc cttatggtca tgatttgcta gacttaaaag ataatcaaaa acttaaaaca
     3181 aaaccaggct ggttaagaat aagcttgcat tatacgcatg aaaaagaaga tattgattat
     3241 ttttttaatg ctttaaataa aactatagta aaattatcgc attaaaatat tatagtttta
     3301 ttattatgta taaaaattct atcttcaaaa accaaatcaa gtgcttttga aagaacatct
     3361 ttttctatat ttctacctgc ttgttgcata tcttgccaag taaattcatg gtttacaggc
     3421 gaaacagctt gagtgataat aggaccttca tcaagattat tatttacaaa atgtgccgta
     3481 gctccaatta ttttaacccc tctttcaaag gcttgtttat aaggatttgc tcctataaat
     3541 gcaggtaaaa aagaatggtg aatatttata atcttgcctt caaaatgcct aacaaaatca
     3601 ggagataaaa ttcgcatata ttttgctaaa accaaataat caaatttata ttgttcaaga
     3661 cattttaaaa tctgattttc ttgctcttta cgatctaaat tttcagcgct gataaaatga
     3721 taaggaattt caaatttctc aactaaatcc tttaaagagt tgtgatttga aatcacagct
     3781 ttgatatttg cttcaagttc gttactataa tgctttatta gcaaatctcc caaacaatga
     3841 ctttctttag tagcaaaaac aacgatatct ttttttctct tctcgcaaag ctctatcaag
     3901 gcttcttgtc caagcatagc ctcaagcgtt cctataaaag cttctttatc aaactcacct
     3961 tctaaaagag cacgaaaaaa aaacattcct tcgcctacaa attcatcgtt ttttactata
     4021 ttgatatgat atttaaaaat aacatcagaa attctataga ttaaaccttt ttgatctttg
     4081 gtgcaaattt ttaatacaga aatcatttag ctaaaccttt tatatattct tttaattcat
     4141 tctctcttgc ttcttgaagc tttaagccaa gaattttacc acaaaatcca gcatttatga
     4201 aatcttttgc taaaatttta ctttcaaact tattctcata aagccctaat cttttagctt
     4261 gctcaatacg ctttttactc caaagtccaa gccatttctt caaaggcatt tcaaaagcaa
     4321 tttttgctag ctcaaaatca cttatatcat caagataaaa agcttgattt gcgtatttta
     4381 ggtattcttt ttgaagtttg gttcttttaa aaaatatatc tttttctaaa ttaaaaaaat
     4441 tcaaatacaa atacaagaat aaagcatcgc tttttacaaa ttctctactt tgtctgagca
     4501 aattttgaaa ttccaaactc ttaaaaatac tctcaaagcc gaaaatctgt ttttctaagt
     4561 caagttcttg caaatatcta tagccaacat caagtctagg gcttttaaag aatttataaa
     4621 gctccgcatt gatcctatct ttgctaagat cagttatatc catactttgc atcaatttca
     4681 agctttcgct agttatctta aagttaaacc ttgaagcaaa tactaccgct cttaatactc
     4741 ttaaactatc ctcttgaaag ctttgtttat caatatgcct taaaaagcct gctcctagat
     4801 cttttaatcc tccataaaaa tctaaaaact catcgttaaa aagattaatc atcatagaat
     4861 ttatggtaaa atcgcgtctt ttggcgccaa gtttttcatc attacaaatt tgaacttcaa
     4921 aacctttatg tccatagctt attttatttt cggttctagc aagagctaaa tcataatttt
     4981 taaacttata cacaaaaaaa ctttttccaa agccttgtgc gcccaatttt tgcataatct
     5041 tttcaaaatc tttaggtttt atatcataaa gctctatatc atagtcacaa atttttaagc
     5101 ctaaaaacaa atccctaacg ctacctccaa ccaaatacgc tcgtttggta taaggcttta
     5161 aaaactcagc aataaactgt aaatcgggat tattttttaa gcttatcttc gatatttgca
     5221 agtaaaaact ctaaaaaatt tatggtcaag tttaacctat tttcaagatc atcttttttt
     5281 atgctattta aaccttcaaa aagaactaaa attctctctc taagatgttt taaaaaaata
     5341 tcctcattaa gcgtttgaac ctctgtcata acactaggat ttaaaatttc actttgtaaa
     5401 aaaggctctt cttttttaaa ctctttattt tcctgagtag aaatttcaat attattttgt
     5461 attttttgct cttcttcaaa ttttgccata gaaattttat cttctaagtc ttgcggagta
     5521 tcaagctctt cgcatacaaa ctccataggt ggtaattcat cttttatttc agtttttcta
     5581 tttaattctt gttcttttaa aatttcattt tgtcttcttt gctcttccat gatagagcta
     5641 acttcgctaa tggttttttt agctaaatct tccaaattca tatttttatc aaccaccttt
     5701 taaattcatt aatttcttca tcgcttttca tattaataaa aaaatccaac atttgagtgt
     5761 ttaagtcttt atgcttggat ctaaaaccac taagacgacg aaccgcatcg atagcgtttt
     5821 gattatccgg atcttctttt aagatatttt tataaatttc taaagcttcg tcttttaacc
     5881 cttgagcctc atagatagaa gcttcagtga ctgtattttt catcactgtt tcctaaaatt
     5941 tttctttaat tctagcaaaa agctttttaa tttatcttta agaaaataag atgtttttta
     6001 atgtctattt tgttttaaac agtttttcta tatattcttt tttttctttc tctaaactag
     6061 aatttaattc tttttgttct tttttaactt gcgcttttaa atcttgattt ttaaaataca
     6121 cataatcaat tccaaaaata acaccaatta taataagcaa tgggattaaa aataccatct
     6181 ttacacttta agaaaattga ttaaatacac taccatagta gcgaacattc tcagcatttt
     6241 catttttttc tatcgtttct attgcaccac tattgattgc tttttggata tcatcattta
     6301 aatcttgata agaaaaaacc atattaatac tgataatatt tggcaatttc tcaagcattt
     6361 tataagagtt taactcatct tctaaatttt cactttcaat cacaactata atcttttcat
     6421 tttcacaaag ttctacagaa caaaaaggaa tttcagatat agcctttttt aaatcattta
     6481 tacattcttc ttttgctaaa atcaaaacac tagaaagatt attcatcaat actcctaaac
     6541 attatactat caccaaagcc tgaaacgata aaatctttat tgtttaaaaa aataataaac
     6601 tcactcatca aattttcatt attaaaagtt ttaacaggct taaaatcact tgtgctaaaa
     6661 acttcactaa ctccagcttc attatcgcta taaacagcga attctccact aggacttaaa
     6721 gcacaagtat atatcaaaaa atctttttgc aaaaaatttt gctcttcatt ttttacaact
     6781 cctatacgcc tatccgttcc acaacttaaa ataacattat ttttaaaatc tacttgatag
     6841 atattatctt tatgcatttt atcatagttt tttaacatct tccaattttt caaatcaaaa
     6901 agttctactt cgccactctc aaaacctgca actagtctac tcttatcttc atttaaaact
     6961 gcatcattaa gactagaatg ggaaaaatta aattttttta tattttttaa acttttatca
     7021 atcaattcta tttcagaacc aatagaaatc aaaagataag tgttttcatt gataaaaaat
     7081 gcttttatta tgctattttc ttcgagcttt ttgatttgta aattttcctt ataaaaactt
     7141 aaatttttag caccaaaatc accctcgcta agtattaaaa gtgtatgttt aaaaacatca
     7201 atgttataaa tcttagcaaa atcatcacca taataatttt taatctttgg taaagataaa
     7261 agttctttta aacttttatc tttaatgtta tattgtaaaa tttcaccttt atcagtgcct
     7321 atatataagt tttgcttatc aagctttaaa gctgttatat tagcatttaa tttcagctca
     7381 taagcataag acaaaacaca aaaaagactc aaaataaaaa gaaatttttt catttattta
     7441 ctttacaccc tcattaatca catcaattaa atttgaacga ctttttaatt gttcattttt
     7501 aaattcaggt ttaaagctat tttccactaa aggttttgca tcactttgtg gaacatgaca
     7561 ctgagtgcaa ttaaaacgac tatcgctaat catatctcct gtggttttat tgtgtctaaa
     7621 atcataataa tgactagcag gaagtggagt tgcaccagca tctgctgcta tagccttatc
     7681 atggcagctt aagcacatat tgttatcttt agttataggt aacaaatctt caatagcatg
     7741 cggaattaac ggtggtgcat tttcataaga acgctcaaaa cgagtagatt ccccaggctg
     7801 taaagttgtg aaatttgcct ccactaaatt tactttattt tcattttcta aacttgcttt
     7861 tctaagtcca atttgttctg aacttacccc actattcatt gcacaagcgg caaaaaatac
     7921 cactgcagca cttcctaata aaaccaattt cttcttcatt atttattcct taaatcaaaa
     7981 atattaaaat tcaaagcatc atcattacaa acttctatac atcttgcaca ccttatacac
     8041 tctcccgatt tcacgctagt actttctttt ccaaccatcc acaaaacctg tttttcagga
     8101 caaatacgga tacattcata acatttagtg catttatcac tatcatgctt tattttaagc
     8161 aaagcaaaac gagaaataaa agcataaaaa gctcctagtg gacaaaaatg tgaacaaatt
     8221 gccctaggac ttaaaaaagt atcgatacaa aaaagtataa aggctacaaa aatccaagaa
     8281 cttgtagcaa aaataatccc tctatgtatc attcctatat aagaaaaact ttcaaacaca
     8341 ggcaatgaaa atacaaaaga aaggactaaa accaagacca atacaaaata gcgtaaattt
     8401 ttaggcaaaa ttaaaaattt attattaagg gttaatttat ttcgcacaaa agcagcaaaa
     8461 tctgtgatta aattaacagg acaaacccaa gagcaaaaaa cccttcctaa aagcaaacca
     8521 tagataaaaa atataatcaa agctcctatt aaagccatta aatctatact ccagcttgct
     8581 agaatgattt gcaaaactgc aaaaggatcg cttaaaggta tggtattaaa aagtctagaa
     8641 gaacttaaat ttccctgcaa gataaaatct gtagctttaa aactaaaaag cgctaaaatt
     8701 ccaagctgaa cgatgcgtct agcaattaaa tacttcatca cagttctcca tcatttaaat
     8761 aattggttgc ttttttaaca ttaaaatgtt ttgaagtatc tgcatttttt atacgacctt
     8821 catctttttc atcccagcct tttacataat gagatcctgc ttttcccaat acatactccc
     8881 ttggcaaaac acgaatggcc ggtttttcag taatacaagc cagttcacaa agcccacaac
     8941 ctacacacac ttcatgatcc acactaggta gtaaaaaagc atgtttggcg gtgcgttcat
     9001 tgcgtttaag ctcaagtttt aaagccctat ctatcaaagg acaggctcta taacaagcat
     9061 cacattgaat tccccagtgt gccacacaag aagcactatc aacaatagca atacccattt
     9121 tcaaagattc tataccctgc tctaaatgct ttttatctaa agcatcagtt ggacattctc
     9181 taatgcaagg aatatcctta caaagatagc aaggaatttc tcttgcctta aaaaaaggcg
     9241 tgccattttt tggactatct aacaagctag caagctttaa agtatcataa ggacaggctt
     9301 ttacacaaag cccacaacga atacatttgc ttaaaaatct agcttcatct tcagccccag
     9361 gaggacgcaa ggtataatta tcatcggctt ttaaagtcaa attagccaaa aatccacctc
     9421 ctgtacataa acatgcagcc ttaaaagcac taacaaaaaa ttctcttcta cctttcattt
     9481 aatcaaaacc ctaaattaag ccttataaat ttttacagcg cattttttaa agtcagtttg
     9541 ttttgaaagt ggacaagtcg catccaaagt aactttattg atatatacat tctcatcaaa
     9601 ccacggcaca tacacaagtc ctacaggcgg tttgtttctt ccacgcatat ctactcttgc
     9661 ttttacttta ccacgacgag attccaccca aaccaaatca ccttgattta agcctaattt
     9721 ctctccatct ttctcactca tatagcaaag tgcttcaggc acagcacggt aaagctcagg
     9781 cacacgcata gtcatagttc cactatgcca atgctctaaa acccttcctg ttgcaagcca
     9841 gaacggatac tctttacttg gtctttcagg tgctttcata aatggcctaa agaaaatttt
     9901 agccttattt ttaatactgt gctctttttc atctttagga gctattaaat ccccatttgt
     9961 aagcattttg ttaaaatcac cataaaaagc aaaatctgaa tttggagccg cttttttagc
    10021 ataataatca aatttagtat taaatctcca ctgtgtttcc ttgccattaa ccacaggcca
    10081 tcttaaaccc cttactttat gataggtatc aaaatccgct aaatcatgtc cgtgtcctaa
    10141 gccaaattta cgatattctt cccaaagata tttttgaacg aaaaagccat agcctgtaaa
    10201 ttcttttcca tcactgcctt gaatttttct ctcatcacct ttaacatcgg tattatcaaa
    10261 gccttttgcg atggcatcgt ttggattaaa gctttttgct tctttattgg caaatagtac
    10321 atcaaaaagt gtatcatctt cgctataacc catagctttt gcctcttcta aaacacttgg
    10381 caaggtaagc ttattatcca ctttttgctc tttccaaact tctttaagct taaagcgttt
    10441 tgcaaattct aaaatttgcc aagtatcact catggcagca cccacaggta agacttgttg
    10501 tttccaatgt tgagttcttc tttcagcatt accataagca ccccattttt cataaatcat
    10561 agcacttggt aaaataagat cagctacttt tgctgaaatt ccaggataac aatcacttac
    10621 aacaataaaa ttatccattt ctcttgctgc tgcaatccag tgatttgcat ttgcagtgtt
    10681 ttgccatgga ttattcactt gcacccatgc aaatttaatt tttccatctt ctaaatctct
    10741 catgatatta agataaggag aacctggttt tgggttgata gtctttgcag gaactttcca
    10801 aattttttca gaaatttctc tgtgttttgg attggctaca accatatctg caggcaaacg
    10861 atgtgagaaa gttcctactt ccctagctgt tccacaggca cttggctgtc ctgttaaaga
    10921 aaaggctcca ctacctggtt tagcttgctt tcctagcaaa aaatgtacca tataagcttg
    10981 ttcatttacc caagaacctc ttgtgtgttg attaaagccc atagtccaaa aacttacgac
    11041 tttgcgattt ttctctatgt aaagattagc taattcttga agttttttct taaaatcttc
    11101 caaagactca ttatcatcac ctttggctac tcttgcagtg tattctaaag tataaggggc
    11161 taaacctttt ttaaattcgt caaaagaaat ttcccagttt ttatcagcca caccttgatg
    11221 tttcatttca aatttatcac ccgctttaac gccaagataa gataaagaag tagcctcttc
    11281 atcgtctaaa gtgattacat tttctttttc aaccgtatct ttttcacttt ctttaaattt
    11341 tggatgattt ggattatttc tcataccata accaatatca gcataaccag ttgcaaatac
    11401 gcagtgatct ttgataaatt tcatatccat agcctctgga tgattataaa caatctctct
    11461 tgctatgtag ttccaaatag ccaaatctgt atttggttta aaaataattt caatatcagc
    11521 aatatttgaa gtacggttag aaaaagtgct tagattaaca actttaacct tatcaagatt
    11581 gcttagtttt ctatcactta ctcttgacca aaggattggg tgcatttcag ccatattagc
    11641 tccccaagtg ataatagtat ctgtaagctc tatatcatca taacagcctg atggctcatc
    11701 tacaccaaaa gtttgcataa aaccaaccac tgcagaggcc atacaatgtc ttgcatttgg
    11761 atcgatatta tttgttctaa aacccgcttt tgcaagcttt aaagcagcat aaccttcttg
    11821 gatagtgtat tgcccactac caaaaatccc tatacctgta acgccgagtt cattgtaggc
    11881 ttttttaaat tgtttttcca tttcatcaaa ggctctttgc caagaaactt gttgaaattt
    11941 gcctttttta tcaaattcgc ctttttcatt catgcgaagc aaaggcataa caagacgatc
    12001 ttcaccatac atgatcttag cattaaaata acctttgata caattaagtc cgcgatttac
    12061 gggtgctgca ggatcacctt ttgttgctac gattttgcca tcttttctag ctatcataat
    12121 tccacagcca gttccacaaa atctacaaac agctttatcc catttccaat cttcttcttg
    12181 cgcgccaagc atagagcttg gaacactaag ccctgcaaca ctagcagcac ttgcaatagc
    12241 ggtattttta ataaaatccc ttctattcat ccttattcct ccaaaataaa aaaatcatct
    12301 tattataaaa aatgaagtat aaaaatctct tgaaatttta ataaaaataa taattttaaa
    12361 gctctatttt
//
LOCUS       DARGEX010000048        12317 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.048, whole genome shotgun sequence.
ACCESSION   DARGEX010000048 DARGEX010000000
VERSION     DARGEX010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.048"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            26..499
                     /locus_tag="SF010_001040"
     CDS             26..499
                     /locus_tag="SF010_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG8229977.1"
                     /translation="MISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVL
                     FQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVL
                     MGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
     gene            496..1008
                     /locus_tag="SF010_001041"
     CDS             496..1008
                     /locus_tag="SF010_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG8229978.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(1024..2892)
                     /gene="rpoD"
                     /locus_tag="SF010_001042"
     CDS             complement(1024..2892)
                     /gene="rpoD"
                     /locus_tag="SF010_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG8229979.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2972..3853)
                     /locus_tag="SF010_001043"
     CDS             complement(2972..3853)
                     /locus_tag="SF010_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG8229980.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            3966..5063
                     /locus_tag="SF010_001044"
     CDS             3966..5063
                     /locus_tag="SF010_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG8229981.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLVFGGYFLTLAFKGILW"
     gene            5158..5730
                     /locus_tag="SF010_001045"
     CDS             5158..5730
                     /locus_tag="SF010_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229982.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(5746..6312)
                     /gene="rsmG"
                     /locus_tag="SF010_001046"
     CDS             complement(5746..6312)
                     /gene="rsmG"
                     /locus_tag="SF010_001046"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG8229983.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNLADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(6313..6873)
                     /gene="ribA"
                     /locus_tag="SF010_001047"
     CDS             complement(6313..6873)
                     /gene="ribA"
                     /locus_tag="SF010_001047"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG8229984.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMRHLK"
     gene            6931..7914
                     /gene="hemB"
                     /locus_tag="SF010_001048"
     CDS             6931..7914
                     /gene="hemB"
                     /locus_tag="SF010_001048"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG8229985.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPAFAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            7911..8831
                     /gene="argF"
                     /locus_tag="SF010_001049"
     CDS             7911..8831
                     /gene="argF"
                     /locus_tag="SF010_001049"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8229986.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSIANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVAKALLCFLDNQRGRE"
     gene            8828..9319
                     /locus_tag="SF010_001050"
     CDS             8828..9319
                     /locus_tag="SF010_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG8229987.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSESENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            9306..10661
                     /gene="hemN"
                     /locus_tag="SF010_001051"
     CDS             9306..10661
                     /gene="hemN"
                     /locus_tag="SF010_001051"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG8229988.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            10663..11928
                     /locus_tag="SF010_001052"
     CDS             10663..11928
                     /locus_tag="SF010_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8229989.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKITKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            11925..>12317
                     /locus_tag="SF010_001053"
     CDS             11925..>12317
                     /locus_tag="SF010_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8229990.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFL"
BASE COUNT         4042 a         1560 c         2128 g         4587 t
ORIGIN      
        1 ttttttaaat attttatgtt attttttgat ttcttatgat tattacaata tccttggttt
       61 gaatatttta ttttttaatg gagcttattg gcagctttta agttcaatgt ttttacatgg
      121 aaatttaact catcttatat taaatatgat agttttgttt caatttgggc gtatgttaga
      181 aacttatttg ggtgctttgt gttttatttt tatttatttt attggcggat tgttgtgctc
      241 acttttaagt gttttttatg tgtattttga ttttaaatat tttggagaaa atataaatgt
      301 cataggcgct agtggtgcaa tttgtgtttt aatgggcttt tatgctgtta ttgataaaaa
      361 tagcacaaaa ggacttatag tggcaatttt acttatgagt tttgtgccat tgcttatggg
      421 ggtaaatgtt gcttggtatg gtcatatttt cgggtttatg tgtggttata ttttagctaa
      481 aataaaagag gtaaaatgaa aaaaatttat attataagac atgcaaaagc aagtaagagt
      541 gaagacatcg atgattttga aagaaaactt actaagagtg gaaaggaaga tttaaaaaaa
      601 ctttttaaaa atcttgcttc gcatgaaatt catcctgatt tggtgctatc aagtcctgct
      661 gttagaaccg ctaaaacagc gaaaaaaata gccaaatttt ataattttga taaaaataga
      721 atttgttttg atgaaagatt gtatctttgc aatgttgaaa atttgctaaa aattctgcaa
      781 gatattgatg atgagtttaa tgaagtattt ttagtgggtc ataatcctag tttaatggag
      841 cttggagagt tgttaagttc gctatgttta gcttcttttc caacttcttc tatcttgtgt
      901 ttagaatttg atattaagga atttaaaaat ttaaaaaaac atagcggaaa attagttttt
      961 tttgaacatg tacgcaagtt aaaagaagaa aaagatctgg gtttttagta aggagattga
     1021 ctcttacttc caaccttcta tataattttt tagttttctt cctactttag ggtgtttgag
     1081 tttttttata gctgagcttt ctatttgtct cactctttct cgagtgacat taagttcctt
     1141 tccaatttcc tctaaagttc tatcactttc atcatccatt aaaccaaaac gcatacgaat
     1201 taccgctttt tctctatcgt ttaattgatc taaaacttca tcaatttgtt cttttaaatc
     1261 atcctttaag atatgatcca ttggagaaag tgaatttcta tcttcaacaa aatctccaaa
     1321 tttaccatca tcttcatttc ctattggagc ttcaagagaa attggttctt ttgtgatttt
     1381 aataacttgt ttaaccttat ctacgcttaa acctacttct ttagctataa cactgacatc
     1441 aggttctttt ccatcttttt gtagatgttc gcggataatt ttattaattt gattgatggt
     1501 ttctatcata tggattggaa ttcttatggt tcttgcttga tcagctatag cccttgaaat
     1561 agcttgcctg atccaccaag ttgcataagt ggaaaattta taaccccttt tgtattcaaa
     1621 tttatccaca gctttcatca aacctatatt tccttcttgg ataaggtcta agaaaggcag
     1681 accacgattt gtgtagcgtt tagctatgct tacaacaagg cgcaagtttg attttgccat
     1741 tcttcctttt gcttcatcag agattttttt accgcgttta atttgctcca aaatttcttt
     1801 taagcgtgat ttttcaagat caaagctttt ttcactggct tctttagttt gaaatagttt
     1861 tttaatttcc atataagtgc ttaccatggt tgtttctaaa gctcgctctg tgatttcttc
     1921 tttgctcaat tttgtaatat cttttaaaat atctgcatgg cgttttttaa gttcatcaga
     1981 aaacataggt aagcggtatt ctaaacgctt aagttctttg tcaaattctt catcactttt
     2041 tagtgcagtt tccattgatt ttacgatttc gctaataagt tttgaagtag ggcctagatc
     2101 cattaatttt tcttttaaaa tatttttttt gaacgcaatg cttaatttat ctaaaagttc
     2161 atctccgctt tctttgtctt tggatgtttt tagccaatct tttttagctt tttctagagc
     2221 tttaaatttt tctataactt ttaaagttct ttcatcttct tttttgctgt tttttttagt
     2281 attttcttca tctgattcta attctgtttc gttttcttca tcttcatcta tatcaagttc
     2341 atcaagttta tcatcacttt tttcttcatc gtcaaagctt ttaaatagtt cttttaccct
     2401 tctttctctg tttattaaag gttctttata atctaaaata aaatctatca aataaggtac
     2461 agaacaaaaa gcatcaatga taatatcttc gccaagttct atttttttgg aaatttcaat
     2521 ttcttcatct ttgtttaata aagcaatttg tcccatttct cttaaataca tacgaacagg
     2581 agagtctgat ctgctccatt ctaataaatc gttttcattg gctaaatcaa attcgttctc
     2641 aaggcttgta tcttggagtt tttgtttttc ttcttgaagt ctttttgcat cttctatgtt
     2701 tttcatttgt gcaatttcag ctgctgaaaa aagttgcact ttgtgttttt tcattaatgc
     2761 ttgcactttt ttagtggttg atgcacttgg ttgttttgta agatatttta ccaatttttc
     2821 atatgtgata taatcttttg cattttcttg aaataattct tctaattcag cttcttgagt
     2881 tttggcgttc attgattatc cttgaaattt atataagctt tggattttat ctaaaaattg
     2941 cttaactttc tatataaatc ggttattatg tttatgattt gaatattttt tcaaattttt
     3001 ctaaagctct gttaaaatta taattttttc tttttaaggt ataaaattta cgctttaggt
     3061 cgatattttt taatttaatt tcataaagtg ttgaattttt taattctttt tctatgcttt
     3121 ttttggaaaa aatagagatt gctttttttt gtaaaacaag ttctttaatc gcagccattc
     3181 tatcaagttc aagaaaaata ttaagttttt ttgagcttgc accaatttcg tttaaaaatt
     3241 tatcccttaa gcctgagcct acttctctta aaatccactt ttgttccaaa agttcatcga
     3301 tataaaattc tttttcattg agttttttat cacttgtagc tactataagt tcatcatctt
     3361 gccaaaaatt tatttctaaa ttttcatact ccactaaagc tggatcaagt tctgcttcaa
     3421 tgattgcaaa ttctatattt ccgtttttta gtaaatttaa acattctttt gaattctgcg
     3481 tttgagagcg aatttctatg tttttaaatt ctgccttaaa atcaaataaa ataggagcta
     3541 aaaaatgttc agaaatgctt tgagttgagg ctatttttat ttcccctaag agcatacttt
     3601 cgtcgtttaa tttttctaag ctttggtagt aggcttgtat aatttttaac caattttttc
     3661 ctagttctaa agcttttggt gtaggtaaga gtttttttcc aagtctttca aataaaatgc
     3721 catcaaattt attttctaaa tttttaatta ctattgaaac attaggttga gttatggaaa
     3781 aattgttggc tgtatgagtt ggactttgag tgtttaaaag atctaaaaat atttccatat
     3841 ctttgatttt catgagtgat tcctttattt aataaaaaaa aattattata aaaattaaaa
     3901 taatatattt ctataatttt aataaaaaaa atataataac acaaaattta caaaaaggaa
     3961 aataaatgaa aacaagtttt ttagcacata gcgtggctat agtgcgatca aattttaagg
     4021 gtttgctttt tactgcttgt atagtgattt ttgctatgta tctttctagt gttcaaagta
     4081 tcaaagatac cactcattta gcagcgactg cttttgctat tatcatagga gtgttgcttt
     4141 ctccttggtt ttttaaatac caacatcatt ttcaagccgg agtgcatttt agtgcgaaaa
     4201 aacttttaag acttggcatt gttttatatg gttttaatat cactttaact gagcttttaa
     4261 gcgtaggatt gaaaggattt ttgctttctg ctatagtgat attttttgtt tttattattg
     4321 ctttatttgt gggaacgaaa atttttaaac tcgataaaga aacttctatg cttgttggag
     4381 ctggaagtgc gatttgcggt gcggcagcgg ttttagcact agagtcaagt ttgaaaagtg
     4441 atccttttaa gggaatttta gctgtaggta cggtggtgat ttttggactt gtatttatgt
     4501 tcttatatcc catagctttt tctttaaatc tttttccttt ttttgatcaa aatgctatgg
     4561 gtgtttttat gggagctacg ttgcatgagg tggcaaatgt cgcaggtgct gctgaaatgg
     4621 caaaggatat ggcaggattt gagcaaggtg cttctaatgt tgcagtgatt ataaaaatga
     4681 tgagagtgat tttacttgtg ccttttttgc ttatagtgac ttattttttc gctaaaaatc
     4741 aacattcaag cagtggaaaa actgcaaaaa gtatcactat accttatttt gcttttgcat
     4801 ttttaggcat gatagtttta aatacttatt tagcaagcaa agaaagtatt ttaggtattg
     4861 ctacgagtga tatcatctct ttaggtaaaa cactttgtac tttatgtatc gtttttgcta
     4921 tggcagcttt aggcttgcaa attgacttta aaaaattttt aaaaagtggc tctagggtat
     4981 ttggcttggc ttttgtttta gggcttgttt tggtttttgg aggatatttt ttaaccttag
     5041 cttttaaagg tatactttgg taataaaaat tattttttat tttagaaaat tttattttat
     5101 taatcaacta agaatataat ttaattcatt aattaaattt attaaaaagg aataaagatg
     5161 aaaaaaattc ttgtaagtgt tttaagttct tgcttgttag cttcggcttt aagtgctgta
     5221 tcttttaaag aagatagttt aaaggtttct tttgaaggat ataaaactaa agatatgata
     5281 ggaacaaaag gtgaatttaa aaatgtagaa tataaatttt ctaaaaatat aaaggatttg
     5341 gcaagttatc ttaaaggcgc taaagctact ataaagccaa gcaatgcttt tatgggtgaa
     5401 ggcaatgata ttataaccaa taatatcaca aaagtatttt tccctgcttt attgggagat
     5461 acggatatta aagttgtttt tcaagatgtg attgcgggtg aaaataaagg cgttatttca
     5521 gcaaaaatta ctatggataa aaaaagtact attgtacctt taacttatac catcaaagat
     5581 aataaatttg aagctaaagg acaacttgat ttgcatactt ttaaaaatgg ttctaaagca
     5641 ttaaaagcat taagcgatgt tgctgcagga catggtggaa tttcttggcc tttagtggat
     5701 atcagtttta atgctgattt agcagaataa aaagtagcct tagggctact ttaaaataca
     5761 atatcttctt aaattatttt caaaaatttc ataatctttt atattttcaa gttcttgata
     5821 aatttcacta cctttccata aaataaaaac tgtattttca tcttttagat ttttgcaaat
     5881 ttcaagcaaa ggcttgacat ccattaaggc tcttgaagtg atgatatcag ctttaaaggt
     5941 attcttgtat tcttgaactt tttctttgta aatatgtaaa tttggaagtt cacattctat
     6001 ttttaatgtc cgcaaaaagg cagctttttt gggattgggt tcgaaaagat gaaaattgct
     6061 ttgcagtaaa aaagctaaaa atacagctgg aaatcctgcg ccacttccta tatcggcaag
     6121 attttttgct ttagaaaaat cataaaaatc taaaatttta atactatcaa agatattttc
     6181 atctatattt tttaaatgag taagattgtg aatgcggtta aatttagata ataattcttt
     6241 ataaattttt accttttctt caaagttttt taaatcgtag ttttgcaaaa aatcataatc
     6301 tttaaaaatc atttatttaa gatgtctcat ttgagtttgt tttatgttta aatactctac
     6361 attaaaacga ttaggttcta ttaaaatcgg tatgcgtgtg atgatttttt ctttgataga
     6421 atctagcttt tcagggttat ttgtgagtaa attaacctta gaaatttcat agtgtttgag
     6481 tataaattct acaatttcat aagttctctc atcggcttta aagccaagct gatgatttgc
     6541 tttaatcgta tcaaaacctt tatcttgtaa agcataagca ttaaccttgt taaaaagccc
     6601 tatacccctt ccttcttgcc taagataaat caccattccg ccattctttt ctatatattt
     6661 tagtgaaaat tcaagctgtt ccccacaatc acactttaaa cttcctaaag catctcctgt
     6721 taagcactct gaatgaattc ttagattgag tgtgtctttt ggagtatttt taaatataca
     6781 taaatgttct ttatcatttt ctttgaaact ttgtatttgg aaatttcccc atttgctagg
     6841 taaattcgca atttctgaaa tttttatttt catttactac tctctataat caaatttatg
     6901 ttaagatttt agcaaaaaaa ggacaaaaaa atgtttaaaa gatttagaag attaaggctt
     6961 aatgaaaact taagagccat ggtaagagaa aattctttaa gtgtaaatga tttgatttat
     7021 ccgctttttg tggttaatgg aacggggata aaaaaagaaa tttcttctat gcctgatgtg
     7081 tttcaaatga gtttagatga aattttaaaa gagtgtcaaa atgtagttaa tttaggcatt
     7141 aaagccatta tactttttgg cgttttggaa aatgagaaaa aagacagctg tggaagcgat
     7201 gctttagatg atgaagggct tgttgcaaga agtataagag agattaagaa aaattttcca
     7261 gatcttttta taatcagtga tctttgtttt tgtgaataca cagatcacgg gcattgtggg
     7321 attatcgatc caaaaacaaa aagtgtggat aatgatgtca ctttagaaat ttcagccaaa
     7381 caagccttag ttcacgcaag agcaggggta gatatgatag cacctagtgg aatgatggat
     7441 ggtattatca ctactttgcg caaagcttta gataaagaag gttttgaaaa tttgcctata
     7501 atggcgtatt ctactaaatt tgcttcaagt tattatgggc catttcgaga tgtagcagaa
     7561 tcagctccaa gttatggaga tagaaaaagc tatcaaatgg attttgctaa tggtaaagaa
     7621 gctttagaag aaagcttgga agatgaagca caaggagctg atattttgat ggtaaaaccc
     7681 gcttttgctt atcttgatgt ggttaaagaa atatcccttc attctaactt gcctttgtgt
     7741 gtttataatg taagcggaga gtatgctatg ttaaaggcag ctaaaaatgc aggagtgatt
     7801 gattatgaaa aagttttgta tgaaactatg atagctttta aaagagcagg ggcaaagctt
     7861 atcatcactt atcatgccaa agaattagct aaaatgttaa aaggagaaaa atgaaacatt
     7921 ttttaacttt aagagatttt tctaaggagg aaattttaag ccttgtaaat catgctagcg
     7981 agttaaaaaa agagcctaaa aaacttttac aagataaaac tttagcaatg atttttgaaa
     8041 aaaactctac aagaacaaga atggcctttg aattagccat aacagagctt ggcggaaagg
     8101 ctttattttt aagtagcaat gatttacaac ttagtcgtgg cgagcctgta aaggatacag
     8161 ctagggtggt aggggcgatg gttgattttg tgatgatgag agtcaataaa catgaaactt
     8221 tactcgaatt tgcaagatat tctaaagccc ctgtgatcaa tgctttaagc gagctttatc
     8281 accctactca ggttttagga gatttgctta ctatcaaaga atggaataag atgcaaaatg
     8341 gtatagcaaa agttgctttt atcggagata gtaacaatat gtgcaattct tggcttattg
     8401 cggctgcgat tttgggcttt gaatttagta tagctatacc aaaaaactat aaaattagcc
     8461 ctgaaatttg ggaatttgct atgaaacagg ctttgatttc aggagctaaa atttccttaa
     8521 gtcatgataa atttgaagcc ttaaaggata aagatgtagt cattaccgat acttgggttt
     8581 ctatgggtga agagaatgaa aaagaacgca agattaagga atttgaagga tttatgatcg
     8641 atgaaaaggc tatgagcatt gcgaataaag acgcgatatt gcttcattgt ttgcctgctt
     8701 atagaggtta tgaagtgagt gaagaaattt ttgaaaaaca tgcagatgtg atttttgaag
     8761 aagcaagaaa tcgcctttat gtggcaaaag ccttgctttg ctttttggat aatcagagag
     8821 gaagagaatg aaagagctag aaaagtatag cacttgctta aagcgcattg atgaatttag
     8881 tcaaaatcta ggaataaaga aaaaagatag aacgattttt aaaatgaagc aaagcgagag
     8941 tgaaaacgaa aaatgtttag ttcttgaaaa tggaagtttt gattctcctg agccttggtt
     9001 tgtgatagat gaaaacgatg aaattcacac tttgctttct ttacaaagtc ttaagaatat
     9061 acttgaaagt ttaaaacaaa gtcaaaaaga gaattttgaa ttgcgtttag aaaaggcgat
     9121 ttatcaacaa attcctgtag attttaacga tgtttggacg gttgccatgg atgagatcaa
     9181 gcaaaaggca caaaatggta ctatggaagt tagtattgat cttgaaaaat taatttctaa
     9241 aatcaaacaa gagcatccaa atttatttgt agatatgcaa gcgatgatag aaagggtaaa
     9301 ccaaaatgag agattataaa gcttttgtaa aatactctaa agcaggacca cgctatactt
     9361 cttatcctac agcagtagag tttaatacaa atttcaaata cgaagaatat atagaaattt
     9421 taaaaaaaca agatagatct ttatcgcttt attttcattt accattttgt aggagtgctt
     9481 gttatttttg tggttgcaat gtcatctata ctgcaaaaga agagagtaaa gaaaggtatt
     9541 taacttatat ttttaaagag cttgatattt taagtaccat tttagatact aaaagagaag
     9601 tggtgcaaat gcactttggt ggcggaactc caactttttt tagcgctaaa caacttcaaa
     9661 gtttgatttt aaaaatcaga tctgtttttg gaaatttttc taaagatgca gagattagct
     9721 gtgagatcga tccgcgtttt ttaaatgagg aacaagccat agttttaacg caaaatggct
     9781 ttaatcgtat cagctttgga gtgcaggatt ttgatgaaaa agttcaaaaa gaaattcatc
     9841 gcatccagtc ttttgaatta acacaaaatg ctttaaatct tgtaagaaat aaaggcataa
     9901 agtctgtaaa tatggattta atttatggtt tgccttatca aaatttacaa agctttacac
     9961 aaactttaga aaaagttatg cttttaaacc ctgatcgttt ggcgattttt aattacgctc
    10021 atgtgccttg gcttaagaaa aatatgagaa aatttgatga aaataccttg ccaagtcctg
    10081 atgttaagct tgaaatttta gaattttgtg agaaattttt aagcaaaaat ggttataaaa
    10141 tgataggaat ggatcatttt gcaaaagaaa atgatgagct ttttaaagct ttagaaaatg
    10201 gaactttgca tagaaatttc caaggttata ctaccaaagg cggtgctgat ttagtcggta
    10261 ttgggcttac aagtataggc gaagggcaaa gacattatgc gcaaaatttt aaagatatgt
    10321 caagttatga agctgcatta gatagaggag ttttgccttt tgaaagaggc gtagctttaa
    10381 gcgatgatga tgagcttaga aaagcagtga ttatggagtt aatggcaaat tttaagcttg
    10441 atatcaagtc aatagaaaaa gaattttgca ttgattttca ggagtatttt aaagaggatt
    10501 taaaagcttt agaagaatac aaagatttta ttaattttga tgaaaatttt atcaaagtca
    10561 atgaaacagg cgttttgctt ataagaaata ttgccatgtg ttttgatgct tatatgaaaa
    10621 acattagtga agataaaaaa gtattctcaa aaacggtgta agatgaaatt tagtcaaata
    10681 agtgatgctt gtgttaaatg tggcaaatgt atacctgttt gtactataca tgaagaaaat
    10741 cgcgatgaaa ttactagtcc aagaggattt ttagatcttt tagctgctta taaagaggga
    10801 agtttagaac ttgataaaga agctaagaaa gtttttgaat cttgtttttt atgcaccaat
    10861 tgtgttgaag tatgtccaag taaattaaga gtagataatg ccatagaaga agttcgttat
    10921 gatatagcta aaaaatttgg tatagcttgg tataaaaaac ttattttttt ctttttaaga
    10981 agacgcaaaa ttttagattt ggtagctaag cttggctatg tgtttcaaag ttgtgcgttt
    11041 aaaattcaaa atgagaatga aaatacaggt atgaaggcaa gattttccat gccttttgtt
    11101 aaaaagggaa gattacttac aagttttaat aaaaaaagtt tcttaaattc taatccaaaa
    11161 tttatcaata atgatggaga aaaaacaata ggtttttttg taggttgttt ggcgaattat
    11221 ttttacatag atacggctaa tgcagtgctt aaaatcacta aggaattaaa aatcaatgtg
    11281 gatttgatga aagaacaagt gtgttgtgga gcaccgcaat tttttacggg tgattttaaa
    11341 agtgttgaag ttttggctaa aaaaaatatt gagtattttg aaaaaaaatt agaaaaatta
    11401 gatgctatta tagttcctga ggccacttgt tcggctatgt taaagataga ttatgaacat
    11461 ttttttataa tgcaaaatga tttagactgg gcaaaacgcg caaaatgtgt gtcatctaag
    11521 atatatatgg ctagcgagta tttttataaa tttacttctt tggaagaaat tttaaaaaca
    11581 aaaaataaat ttaattatag cattacttat cacgatcctt gccatgcaag aaaaatgcaa
    11641 ggggttttta aagagccaag agaactttta aaaacaaatt atcattttgt agaaatgagt
    11701 aattctaata cttgttgcgg ttttggcggg gtgggtatgc aaacggatta ttatgataga
    11761 gccttaagtg tagggcttaa aaaagcacaa atgatcgatg aaagtaaggc tagtgtggta
    11821 agtgccgagt gttcagcttg cagaatgcaa atttcaaatg cattagaaca aaattcaagc
    11881 aaggttgttt ttgctagtcc tttagaactt atagcaaaag ctttgtgatg atgaagatag
    11941 tatttaaagg caaaagttct gaatatgaaa ttcaaagatc gtgcttttgt gttgatgctt
    12001 ttgtgattaa agataagatt gaagaacgag atggtgttga ttttatcact tcaaatgtag
    12061 atcttttgga atttagtgat gacagtttta cttttgaaga aattgtaaaa cattttaata
    12121 tttgtgatag tgaagatatg attatcgttg aagattttga catgaaatca aacaaagata
    12181 atcaaaacca agaagatgat atagaacaca acatcctaaa atccgaaaaa ataatacatg
    12241 aaaacacaaa acaaacaagt atgcaattta aaaatttaaa atttttttca agaattttta
    12301 aaaatgaaaa ttttctt
//
LOCUS       DARGEX010000049        12274 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.049, whole genome shotgun sequence.
ACCESSION   DARGEX010000049 DARGEX010000000
VERSION     DARGEX010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.049"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..951)
                     /locus_tag="SF010_001054"
     CDS             complement(<1..951)
                     /locus_tag="SF010_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEG8229991.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKI"
     gene            complement(948..1607)
                     /locus_tag="SF010_001055"
     CDS             complement(948..1607)
                     /locus_tag="SF010_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8229992.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGMLVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            complement(1604..2722)
                     /gene="carA"
                     /locus_tag="SF010_001056"
     CDS             complement(1604..2722)
                     /gene="carA"
                     /locus_tag="SF010_001056"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG8229993.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(2722..3273)
                     /locus_tag="SF010_001057"
     CDS             complement(2722..3273)
                     /locus_tag="SF010_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG8229994.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(3366..3884)
                     /locus_tag="SF010_001058"
     CDS             complement(3366..3884)
                     /locus_tag="SF010_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG8229995.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(3877..4305)
                     /locus_tag="SF010_001059"
     CDS             complement(3877..4305)
                     /locus_tag="SF010_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG8229996.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(4302..5552)
                     /locus_tag="SF010_001060"
     CDS             complement(4302..5552)
                     /locus_tag="SF010_001060"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG8229997.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKHAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(5580..5677)
                     /locus_tag="SF010_001061"
     tRNA            complement(5580..5677)
                     /locus_tag="SF010_001061"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5641..5643),aa:Sec,seq:tca)
     gene            5817..7025
                     /gene="yedE"
                     /locus_tag="SF010_001062"
     CDS             5817..7025
                     /gene="yedE"
                     /locus_tag="SF010_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG8229998.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKSKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKALKEGVKINLLTEFGNLNGFFINLVLFILMFAFVVFYK
                     KHFFKNQLKG"
     gene            7029..7256
                     /gene="yedF"
                     /locus_tag="SF010_001063"
     CDS             7029..7256
                     /gene="yedF"
                     /locus_tag="SF010_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8229999.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(7272..8741)
                     /gene="putP"
                     /locus_tag="SF010_001064"
     CDS             complement(7272..8741)
                     /gene="putP"
                     /locus_tag="SF010_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG8230000.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(8759..12247)
                     /locus_tag="SF010_001065"
     CDS             complement(8759..12247)
                     /locus_tag="SF010_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG8230001.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYVYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEVKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSIIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         4076 a         2246 c         1504 g         4448 t
ORIGIN      
        1 gattttcctt tttttgtttt taaatgcttc tattgaattt aaaatcaaat taagaaaaac
       61 tcttattaaa ccattctcat atgccaaaac ttcataatca cttttcgaaa caatattaat
      121 atttacatga tttttttcta tagtttcaaa agcaatttcc aaggctttat ttaaagtctc
      181 ttttataaat acacactgct ctactccttt gttaaacaaa gttctaaaca catcaattgt
      241 ttctgacata tttttaatca tatcttttga ttgtgagtaa atttcagcaa atcctttttc
      301 atctttaaga ttttgcttca tttgaaacat ggcaataccg agctcattta acggttgtct
      361 ccattgatgt gctatatcac taatcatttg ttctaatgaa gatttcaaaa tctcttcata
      421 tgctatttta atatcttttt catttttttc caaggcaatt tgcatttttt tctcaaattt
      481 tttacctaac tgtataaatt cttgttggtg atttttaact gtattttcaa gattaatact
      541 taattctctt aatttagcgt gatttagagc aagctcttca ttaagcttaa aagaattact
      601 aacatcatga gagaatgcta ctatttctat taattcatta tttttatcca atatggggat
      661 taataaagtt tcaagataga aagttttgcc taatttatca atatttttaa aaataacttg
      721 ataaggtttt ttatatgaaa gtttttttaa aagttcttca atataacatt cctcaacatc
      781 tggatgttta aatattgaat gtttttttcc tataagctct tttttactat atccacttat
      841 ttgacaaagc ttatcactga caaaaattaa atttccttga acatcagctc ttgaaaaaat
      901 tgtatttttt tcaagagctt taaaaaactg atctttaaaa aaatctttca ttgaaaagcc
      961 ttaaaaccta tataggcaag atttataccg taacaaacaa taacgccata cgataaataa
     1021 ttaaataaat ttttcaaaaa atcactaaaa aactgtgaaa ttttagaaaa aaataacatc
     1081 gcaggtaaag ttgatattcc aaaaatcatc attaccaaca taccttcaaa aatattttgc
     1141 ttactcattg cattggctat aaaaaaatac accaatccac aaggaacaaa accatttgaa
     1201 aatcctaaaa atatggctga ttttaatcct ttaaaatttt tagatttttt aataattttc
     1261 tttacaaaac tatcaaaaaa aacattattt tcaataaaag ataacatatt gcctctaaaa
     1321 ataagagcaa aacccaaaat catcataaat ataccaagaa taaaaaatga caaactttga
     1381 accttagcat tgattgccaa gatattccca aaagtcccaa aaattatccc taaaacaata
     1441 taagcaaaaa ttctaaacaa attataaata aaagttaata aaaataaatt attgcttttt
     1501 gaattcaaat ttataaaaag taaattaaaa ccaccacaca tagaatagca gtgtccaaaa
     1561 ctagataaaa aagcaacgct gataatagct aaaaaatcta tactcacatc aaattcataa
     1621 attctttaaa aatatactta ctttcatgag gacctgaaga actttctgga tgatgttgta
     1681 ctgaaataat aggatagtct ttatatctta ctccttcaac attatcgcca aataaatttc
     1741 tatgagtgat atgagccact tgagctaatt cttctggaac attataatta tgattttgtg
     1801 cggtaatttc taccgttttt gtatcaagat tgatcacagg atgatttgct ccatgttgtc
     1861 caaatttcat tttataagtt tcatatccaa aagcattact taaaagctgg tgacctaagc
     1921 aaattccaag cataggaatt ttagcttctg caagtttttt aatctctgca atctcttgtt
     1981 ttaaaatcct tggctcacct ggaccattag aaagaaacac gccttgaatt tcaccttttt
     2041 tatacagagt aatcaactca tctgctttaa cattatatgg ataaacttct acttcaaaac
     2101 ctacttctac aagttcattt aagatatttg ttttaacacc ataatctata acagcaactt
     2161 ttttctcact tcttttagca tcattaaatt tttgaaaact agcgttccaa acgccttgtt
     2221 tatgagaata atttttctta gtgctaactt cttttacaaa atttacttca tcaatttttg
     2281 ctgatttttc taaggcgatt tttaaatctt ctttatttga aatttcagtt gaaattacag
     2341 ctcttaaatt gccattattt cttatcattt ttactagata tctcgtatca agttcataaa
     2401 ttcctatttt tccatgtttt tcaagataat cttgcagact ttctttagcg cgaaaatttg
     2461 aaaaactgga acttaattca cgcattaaaa caccacttgc aaaaatttcc ttgctttcat
     2521 tatcattttc attggttccc actataccaa tttctggcat ggaaaatacg ataaattgcc
     2581 ctgcataaga aggatctgaa ataatttctt gataccctgt taaagaagtg ttaaatacaa
     2641 gctctccaaa aaaagtaccg ctctttccaa aagccttagc acttaaaaaa atatcatttt
     2701 ctaaataaat ataagccttc attaaaacat accttttttt ctgagctctt cttgatagag
     2761 tttttcaaag ataagatcat actcttcgct acctggaata ggttttgttt tataattgct
     2821 aattttctca taaacctcat cttcaagttt ttcataaatt ttaagataag actctatgct
     2881 tgaaaagatt aaatttttaa ctctattttc actcactata aaattaatat aatcattctc
     2941 tacaagttct tctaaaattt gatgcgctag atgattatgt ctatcttcag aatctaaaat
     3001 cacattaaat tcaggagcta actttttctt cacaagccaa aacatatttt tacgatctac
     3061 ttgcataagc tccatttcat cttcttgttg ctctaaaagc tcttttactc tttcatctaa
     3121 ttttctttca tttagaatat ctttctctaa aacttctatt atacatacct taagcttttc
     3181 taattgatct ttaatttcta caaaagaaga attagctata tctaacatca ttttatttgc
     3241 gatataagga atatgtggta attttatacg catcttaaaa accttttatt tgataatgtt
     3301 tgaaataata gcttattttt ggtaaaagaa tgttaaaaat gaaaaatttt cattatttta
     3361 atcacctaat tactagcatt attatctaaa tttttcaaaa gcaaagtaag ctcgctagct
     3421 ttttttggat ccattttaga taaaacacct gaaattttac gcgattccaa agaaagcatt
     3481 attttgcttg catcctctgc atccatttga cttaaaacat ctgcaatggc tgcatctttc
     3541 atttgggaat aaatttcttt aaccctacct tgagttttat cattgattga atttaaaatc
     3601 ttttgttgtt tttctacaag ccttgcgttt tcaagcttta attcttcaat ttttgccaaa
     3661 gttgcattaa cctcagcctc ttttttttct aaattttcaa gcctttcttt ttgcaaagct
     3721 tcaaaagagg ctttataagc ttctaaagat tgtcttgctt catcaaattc tctagtttgc
     3781 aattcaattt gagcttttct agcttcaaaa tactgctcac aatcttgttc agctccaaaa
     3841 actacacttg aaataaaaac taacaatata aattttttaa tcatcttttt ctcctttgaa
     3901 aaaacgactg attgcaattt catctaaaaa tttttcttca gccttggcaa gttctttttg
     3961 cttttgttta atttcctcgg cttctaaaac cttcattttt tcataatcta aatgtgcttt
     4021 ttgatataaa aactgataat gattcatttc ttttttagaa agttctactt tctccctagc
     4081 tcttgccaaa gcctcgcgtc ctacttgcgc catacttaaa ttcgatctta actctgctat
     4141 agatcctgat tttggcaata cgcctaaact ttcacactct tggcgtgaaa gttcataagc
     4201 tttttcatgt tcaagctgtc tttgtttggc ttgattaaga tttgattctg ctttatcaag
     4261 ttgttgtttt cttaccttta caacagaatt atatttactt ttcataagat gatagtatca
     4321 tctctttcag ggctagtaga aatatacttt accttaaccc ctgcaagctc ttcaagtctt
     4381 gctatatatt ttttagcatt ttctggcaat aaatcataat cttttatacc aaaaacttta
     4441 tcccaaccat ccatttcttc ataaataggt tgaacatttt ctaaatcgct tggtatatag
     4501 tcgatttcca tgcccttata ttcataagca cgacaaattt ttatcttttc aaaaccatct
     4561 aaaacatcga gcttcatcaa agataaagca tcaagaccat taagtcttgc tgtatatctt
     4621 acagcaactg catcaaacca tccacagcgt cttttacgtc ccgtgcttac gccaatttct
     4681 tttccaattt gcgcaatttt ttctccatct tcacccttat cctcagtagg aaaagctcca
     4741 tttcccacac gcgttgtata agcttttaca atacctataa tatttcccgc ttctttagga
     4801 tttaacccaa gtcctgttaa agcgcctgct gaaatagtac ttgagcttgt aacataagga
     4861 taagttccat gatcaatatc aagcatagag ccctgagctc cttctaaaag tactctttta
     4921 tcttcatcta aagccttcca aagcattctt gtagtatctg taatataagg agttaaaatt
     4981 tcattaaaac gttttaaatc agcaagcaat tcttcagcac ttggaatttc aatttcaagc
     5041 atttcaaaaa aagttttatt agcttcaaaa tcttttatca aagcctcgca aagtctttgt
     5101 ggttctaaaa gctctccaac tctatgtcct gtacgattaa tcttatctgc ataagaaggt
     5161 cctataccct tacctgttgt tcctatggca tgtttgcctt tgagtttttc ttttgcaatg
     5221 tctattaaag aatgatgttt taaatttaaa tgagctctat cgctgatata taatctacct
     5281 tttaaatttt caaattgagc catttcagcg atcaatactt caggagaaac cacaactcca
     5341 tttccgataa tattaataca tcttggatgc aaaactccac ttggcataag atgaagcgca
     5401 tatcttacac catttaccca aatcgtatgt cctgcattgt gtccacctgc acttctgcaa
     5461 acaaaatcat aattttcaca taatttatca actaccttgc cttttccttc atcgccccat
     5521 tgaatgccga caataatatc tgctttgctc ataaaaattt ccttgatttt acttaatatt
     5581 ggcgagaaga tgagagaatc gaactcccca aagaatagtc aactatcctt tcatctgatt
     5641 tgaagtcagt ggcgatcacc agatacgcta atcttccaaa gtgataatta tagcgatttt
     5701 taatgaaaaa caaaataaat ttatcaatat tctttttgac ttcacattaa atttaagcta
     5761 taatctcact cttttttagc atcaagtttt gatgattaca tttttaggat ctttctttga
     5821 attcttttaa acaaaaatat ttaatcaatt tttgggacaa ttcccgttct atgattgcac
     5881 ttggaatttt aagtgcagtg tattttggaa tttttggtgg agtttgggct gttactggag
     5941 aaatgacgcg ttggggtggt gaatttttag aacttttagg tatgaattta gatggatatt
     6001 cttattacca aaagcaaaat ttaaatggaa cccctttaac aagaactgat ggtattatgc
     6061 tcataggtat gtttataggt tgtttagtag ccgcactttt agctaacaaa gtcaaatttc
     6121 gtctacctgc tagcaatata agaatttttc aagcaatagt aggtggaatt ctttcaggat
     6181 atggagcaag acttgcattt ggatgcaatt tagctaattt ttttacaggt ttaccttatt
     6241 tttctttaca cacttggctt tttactgttt ttatggtttt aggaatttat ctaggagtaa
     6301 aaatttgcaa cacttccttt tttaaatcta aagctaaatt agaacgggta aataaagaaa
     6361 acttgccgct aaacaagcaa agtttgcgta caaaactata ttttaactta ggcatattgc
     6421 ttttcatagc ctttttggtt tgggtgtttt atcttgtttt tacaaatggc aatatcagca
     6481 cacaaaacaa acaaagtctt ctagctttag cactgatttt tggttttgtt tttggttttg
     6541 ttatttctag ggggcaaatt tgttttactt cttgctttag agatttattt ttatttggta
     6601 gagataatgc tataaaaggc gcattaatcg gtatgattat cgcctcttta atcgcttttg
     6661 cttttatctt gcagggtcat actagtaaac tcatagaact ttctcctgct gtagctgtgg
     6721 gggcattttt atttggtttt ggtatagttt ttgccggagg ttgtgagtgt ggttggactt
     6781 atcgtgcctt tgaaggacaa agtcatttta tgatagtagg aattgcaaac ataataggaa
     6841 ctatgatttt agccttaagt tatgactttt taccaaaggc tcttaaagaa ggtgtaaaaa
     6901 tcaatctttt aactgaattt ggaaatttaa atggattttt tatcaacctt gttttattta
     6961 tcctaatgtt tgcttttgtg gtattttaca aaaaacactt ctttaaaaat caacttaaag
     7021 gataaacaat gaaaattact tatagtttaa atttgcaagg tgaagcttgc ccttatcctg
     7081 ctatagcaac acttgatgtc ttacctaagc ttaaaagtgg agaaatttta gaagtacttt
     7141 gtgattgtcc acaaagtatc aattccatac ctcaagatgc aaaaaaccgt ggttttaaag
     7201 tgcttgaaat cgatcaaagt ggacccacgc taagattttt aatacaaaag ccttaaaaaa
     7261 ggcttttgtt ctcaaagctc ttttaacatc ttttcataag ctgctttagt tccagatctt
     7321 acatttgtaa acaaacttgc aataataatc accgccgaag ctgctaaaaa ccctggaact
     7381 atttcataaa gacccgaatt tgcaaaattc ttccaaagta ccacagtagc agctcctgtt
     7441 atcataccta agattgctcc tactcttgtc atcctactcc aaaataaaga aaaaagcatt
     7501 acagaaccaa aagaagctcc aaatccggcc catgcataag aaactatact caaaacactt
     7561 gagtttttat cagtagaaat caaaaacgct attacagcta ccaataaaac acctaattta
     7621 cctaaattta atacaacatg acttggcgca tcttctctaa aaatcttttt ataaaaatct
     7681 tccgctatag tagaacttga aaccagcaat tgtgaacttg ctgtactcat aatagctgct
     7741 aaaatagcac tgagtaaaat acctgctatc caaggattaa ataaaagctg cgacatcacg
     7801 atgaaaatct tttcaggatc ttgcaaactt aattcaaatt tatgcacata agctatgccc
     7861 aaaataccta tcatacaagc acttaaaaga caaaccgcca tccaagcaat acctataaaa
     7921 gtggccatag gaatatcttt agtagaacga atcgacataa aacgcactaa aatatgtggt
     7981 tgaccaaaat aacccaaacc ccaagcaagt gcagatataa tacttataac tcctactcct
     8041 tcgcccatag ataaagcttg tggttttatt tctcttacta tattcatcgc ttcaccaaag
     8101 ccacctaaat gataaagcat aaccaaaggt acaataatta aagccatcat cattaaaagc
     8161 ccttgtatca tatccgtcca acaaaccgcc ttatatccac ctaaaaaagt ataagcaaca
     8221 ataataatcg ttccagtagt taaagcataa tcgtatctga taccaaaagt actttcaaaa
     8281 agttttgctc cgcttacaag ccctgatgaa acataaaagg taaaaaatat caaaattacc
     8341 accgcacata cgatgcgcag tatatgttta tcatcatcaa aacgagtttc aaaataatca
     8401 ggaatagtca aagaatttgc aatcacactg gtataaattc taagtctttt tgccacaaaa
     8461 atccaattta aactagctcc tatagtaagc ccaattgcaa tataagaatc tataaaacca
     8521 cttacatata aagctcccgg taaacccatt aaaagccaac cactcatatc agaagcccct
     8581 gcgctaagtg cagatatcac aggccccata gtacgcccac ctagaaaata atcctctgaa
     8641 tttttatttt gtttataaaa ataaaaacct atataaagca ttaataaggc ataagctaca
     8701 aacatcactg ctattggggt attaatttga accacttcca tcaatctctc cttgatcatt
     8761 aagatattgc tctaatgcct aaatttccat aacgatgaaa agatatactt aaagcttttt
     8821 cattaaaata atttaaaagt tcaaaacgac catttaataa tggcttttct cttataatga
     8881 ttttagcaag ctttgcagcc tctttataaa tctcatcatt tacatctggc tttgctaaat
     8941 aacgcactct ttcatattct ttaatactct tgataaaatt ttctttattt tcttttaaaa
     9001 acaatacttt tgctcctatg ctttgaacaa ttcgttctat tatactaaca tcttgttcat
     9061 cataactgat acttagatca atatttgcaa tatttgcacc taaaaccaca cctaaaacat
     9121 cttttaagct ttcatttcca caaagtctta aaaccatatt ctttatttta gtataagaaa
     9181 aaagattatc ttctccacga atattgacat aatcttttga aacactaaac tcgtttttat
     9241 aatgataagc ataagattga gacattttaa ttaaattgtt cataaaatct tgtgcttctt
     9301 ttaaatctat ttgtgctaat ttttttgaaa atttatcttc aattaaatga tcatcaaaat
     9361 cttcttgctt aacctctaaa aattgagtga tataattata aattcccact tttctaccca
     9421 aacctatagc tgatttttta atcccaccaa aaggttgacg cagcactata gcccctgtgg
     9481 ttggtttatt gatataaata tttcctgctt ctatgtgagt gtgaaaatac tcccattctc
     9541 tttcatctaa gctttcaaaa cctgcagtta aaccataacc tgtggaattt actatatcaa
     9601 tagcttcttt taagtcttta gccttcatca cacttaaaat cggtacaaaa agttcattca
     9661 tatgagtaaa atcacccttt ttagtgccat attttatgcc tggagtcatc aaataaggat
     9721 tatcctctaa aaacttaggt tttaatgccc attcttcata aggttgtaat tcatctaagg
     9781 ccttttgaac tttagaactt ggcttatcag ctaaagtacc taatttattt ttaaattcaa
     9841 aaggattgcc cactgccata gaactcgcag catccactaa agtcttttta aattcttcat
     9901 catgataaac ctcttcttct aagactagca aagaagtagc tgaacatttt tgaccgctat
     9961 tactaaaagc agaatgaatg atatttttaa tcgcactatc acgatcagca aatttagaaa
    10021 ctatagtcgc attctttccg ccagtttcag cacttaaaag caaggttgga ttagctttta
    10081 acatagcata agcagtatcc tctcctcctg taagaattga aaatttaatc gcttcatcaa
    10141 taagtaaata tttagaaata tcacttcctt ttgaaggtaa gaaaatcaaa gcatcttttg
    10201 gaatacccga atcccaaaaa cacttacaaa gcatataacc tgttagagtt gaaagtgaag
    10261 aaggtttgta aatcaccaca ttacctgcgg ctagtggtgc agctatagta cctactgaaa
    10321 ttcctatagg aaaattccaa ggagctatgg taacccctat acctttaggt gtgaatgtaa
    10381 cttttggatt ttgtttttta agctcttcta aagagtgcgg ataaaactct ataaaatcaa
    10441 tagcctcgct tacttcagga tcgatctcta aaaaggtttt acccacttct aaagctgcca
    10501 aacctatcaa atcccctctt ctttctctca tcagttttgc acttttggct aaaatttgat
    10561 aaatttcatc atgacttttt tgtgtaaatt tggaattttt agctacttct aaagcttgtt
    10621 tgatttcttt ttctcctgct aaataagcct ttcctataac tctatcttcg atcttatctt
    10681 taacttctaa aacatttaaa ttttctgctt taaaatcaag ttcgcctata acaggataaa
    10741 catcataatc ttttaaattt tcatatttag ttttaatttc tttagcccac gctctatttt
    10801 gcgctaaaat aaaatccgta tcgctttcat tgctaaattt tttactttca taagaactta
    10861 tgatatttga ttctttattt ctatcttgct tacgatgtgt agtattatca agagttttta
    10921 tgccttctaa agattttaaa aaaagttctt tttggatatt ccagttttta tctcctactt
    10981 taagattgaa aaaataacgc ataaaattat cttcacttgt attttcatca aggcgtctta
    11041 caagataagc aatggcattg ttaaaatgtg cttcatcgca aactggggca taaaggatta
    11101 gatcatgcat tttagataat tcataagaac attgcaaact cataccttca agcatttcaa
    11161 aagtaaaaga atccaaagca cccacttcac ttatacgtgt ataaacataa gcaatctcaa
    11221 agatattatg acttgcaatt cctatgttga tgtatttata attgtctcct tcaagaataa
    11281 aatcaagcat tttattataa ttactatcag tatctatttt tttgtaaaaa gtaggaagct
    11341 cccaacccct ttgagacgca atggtttctt cactttccat attagcaccc ttaacaaaac
    11401 ggatcttaat aggcttcata ccttttaaaa ccctctcttt tgaaaaagca aaaagttttt
    11461 taagatactt ataagaatca ggaatataag cttgcaaaac aatccctgct ttaatatcaa
    11521 atttagccac actttccata aaagctgcaa cggtgagctc taaatcccta aattcttcca
    11581 tatcaagatt gataaattta gatacacctt gttttttctc ttcttctaag gctaaagcat
    11641 aaagataatc tagtcttttt acgacctctt ctttggaata attaaaatct ataatattaa
    11701 tttgcgaaaa aatagtagta atttttatgg aaatataagt gatatagctt gattttaagg
    11761 cttcttcgta tttttgcata cgatatttac tctcagcttc acctaaaacc tcttcgccga
    11821 ttaaattcac atttaaggta attttatctt gctcttttct tttcttaata tgtggttcta
    11881 aaacactagg atttgcatct agaaccatag ctttagtatc ttctcttaaa tgtttgacaa
    11941 aaaaaggtac acttaaatta ggagcaaatt tgccaaaatt taaaaagcta aaaagtagga
    12001 atttttcaaa agtgctaaaa aaatccgcta tgccatattt actcaaagta tattctataa
    12061 gctcaaaact tgcattttta tctttacatc taaaagaacg atctaaaagc tctataagca
    12121 taactttatt tttgggatta ttaagaagtt tttgcatttt agcatggaat tctttttcag
    12181 aatttgaaat attggcttct atttgtcctt gcaattcttc agctaaggct aaagcttttt
    12241 gtatcatttc gtatctccta agataaaata aatt
//
LOCUS       DARGEX010000050        12152 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.050, whole genome shotgun sequence.
ACCESSION   DARGEX010000050 DARGEX010000000
VERSION     DARGEX010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.050"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            94..867
                     /locus_tag="SF010_001066"
     CDS             94..867
                     /locus_tag="SF010_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8230002.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGIKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            916..1686
                     /locus_tag="SF010_001067"
     CDS             916..1686
                     /locus_tag="SF010_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8230003.1"
                     /translation="MNLFKIIILAYILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            1696..2472
                     /locus_tag="SF010_001068"
     CDS             1696..2472
                     /locus_tag="SF010_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8230004.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            2556..3218
                     /gene="flgA"
                     /locus_tag="SF010_001069"
     CDS             2556..3218
                     /gene="flgA"
                     /locus_tag="SF010_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG8230005.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            3215..3778
                     /locus_tag="SF010_001070"
     CDS             3215..3778
                     /locus_tag="SF010_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG8230006.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            3818..4294
                     /gene="coaD"
                     /locus_tag="SF010_001071"
     CDS             3818..4294
                     /gene="coaD"
                     /locus_tag="SF010_001071"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG8230007.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            4285..4863
                     /locus_tag="SF010_001072"
     CDS             4285..4863
                     /locus_tag="SF010_001072"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG8230008.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDF
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            4860..6086
                     /locus_tag="SF010_001073"
     CDS             4860..6086
                     /locus_tag="SF010_001073"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG8230009.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEKVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            6083..7918
                     /gene="speA"
                     /locus_tag="SF010_001074"
     CDS             6083..7918
                     /gene="speA"
                     /locus_tag="SF010_001074"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG8230010.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            7919..8557
                     /gene="cysE"
                     /locus_tag="SF010_001075"
     CDS             7919..8557
                     /gene="cysE"
                     /locus_tag="SF010_001075"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG8230011.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            8730..9899
                     /locus_tag="SF010_001076"
     CDS             8730..9899
                     /locus_tag="SF010_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG8230012.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGKCDKDIEKMRQAFEKRRNLALDMLKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGTDGYFRLSYATSDELIEKGLERISHFIANYK"
     gene            9905..10693
                     /locus_tag="SF010_001077"
     CDS             9905..10693
                     /locus_tag="SF010_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEG8230013.1"
                     /translation="MKRPLPFILAATNNGSMIINHLDRHDTPQGSYGVGFQFLNYGSF
                     DPEEIDLCINLLKLRREYYKDNVFAIDCGANIGAHTIKWAIEMHNWGGVLAFEAQERL
                     FYALAGNIAINNCFNAKAIHAAIGNPEKNQNELEILTPDYTQKASFGSLELKSQNNNE
                     FIGQIPQKKEKVPYLKLDNLNFKRLDLIKIDVEGMEQEVILGCLNHIKTFKPILQIEI
                     IKSNTRDIINILENLEYEIFQSGINILAIYKADPVINHLSSSNP"
     gene            complement(10717..11058)
                     /locus_tag="SF010_001078"
     CDS             complement(10717..11058)
                     /locus_tag="SF010_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8230014.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(11128..12150)
                     /locus_tag="SF010_001079"
     CDS             complement(11128..12150)
                     /locus_tag="SF010_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8230015.1"
                     /translation="MNLSFKTFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVF
                     NTHASPISFINKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
BASE COUNT         4557 a         1826 c         1939 g         3830 t
ORIGIN      
        1 tgactatcaa caagttttta tatacttctt cctgatagtc agagtgaatt tattaagatt
       61 aaagcaagca caaaatgact aaaaaggaaa aaaatgaaaa tcaaatcttt atttatagca
      121 agtattttaa cattaagtct taatgcaaat gcattagaaa ccatcacagt tgcagcaact
      181 cccgtccctc atgctgaaat cctagaacaa gtaaaacctg atttagaaaa acaaggctat
      241 aaacttgaaa tcaaagaatt tacggattat gttttaccta atctagctgt tgataacgga
      301 gaagccgatg caaatttttt ccaacatact ccttatttgg aagaatttaa taaaaacaaa
      361 ggcaccaaac ttatcaaagt agctgccata cacatagaac ctatggctgt ttactccaaa
      421 aaatacaaaa gtctagatga tattaaagaa gggattaaaa tcgccattcc aaatgatcca
      481 accaatgaaa gtagagcttt agatattatt gcaaaaaaag gtttggtaaa atttaaagat
      541 aaggctttaa aaacacctct tgatattata gacaatccta aaaaaattaa atttgtagaa
      601 ttaaagcccg cacaacttcc aagagctttg gatgatgttg attttgctgt aattaattcc
      661 aactacgctc tctctgcaaa tctaaatcct gcaaaagata gcgtatttat cgaagataaa
      721 gaaagcccgt atgcaaacat tcttgttgta agagtgggac atgaaaacga tccaaaaatc
      781 aaagccttaa tccaagctct acaaagtgat aaaatcaaac aatttatcat agaaaaatac
      841 aacggatctg ttttacctgc tttttaattt tgtcccttac ctagggactt ttttcttaaa
      901 tacaaaggag tttttatgaa tttatttaaa attattatac tcgcttatat tctaaattta
      961 tctagcctat ttgcacaaaa cattactata ggagccactc caaatccttt tggtagctta
     1021 ctagaactaa tgaaagatga ttttaaaaac aaagggtatg agcttaaaat agtagaattt
     1081 tcagactata ttttgcccaa tcgtgcatta gaggaaaaag aacttgatgc aaatttatat
     1141 caacacaaac cttttttaga agaatacaac ctaaaaaaag gttcaaattt aattgcaaca
     1201 acgcctgtac ttatagctcc agtaggagtt tatagtaaaa aaatcaaaaa tttagaaaat
     1261 cttaaagaag gtgctagagt tgctatacct aatgatgcga ccaatgaaag cagagcttta
     1321 gagcttttag agaaagcaaa attaatagag cttaacaaaa atactctaaa aaccccattg
     1381 gacataaaca aaaatccaaa aaaacttaaa tttatagaac ttaaagccgc acaacttcca
     1441 agagctttag atgatgttga tattgctata attaattcta atttcgcact tggagccggt
     1501 ctgaatccaa gtaaagatac tatttttagg gaagataaaa atagccctta tgtaaattat
     1561 gttgtggtac actcagaaga taaaaatagc gaaaaaacca aagtaattga tgaaatttta
     1621 agaagcgata aatttaaagc catcattaat gaacattata aagatatatt aatcccagct
     1681 ttttaggagt ataatatgaa tattaaaaaa atatttttaa gtgttttatt tacaattagc
     1741 cttagttttg gggcggataa aaccataatc ataggtgcaa caccaacgcc ttatgctgaa
     1801 attttaaatt tctctaaacc cttatttcaa gaaaaaggtt ggaagttaat agttaaggaa
     1861 tttaatgact ataatatacc taacatcgct ttaaatgaaa aagatttaga tgcaaattta
     1921 tatcagcata aacctttttt agatgatttt aatacccaca aaggaacaaa attaagttct
     1981 ttaggtgcta ttgttttagt tcctatggct atatattcta actccataaa agatataaaa
     2041 gacattccta atggtgctaa aatcgctata cctaatgatg ctaccaatga aagcagagct
     2101 cttgatttac tagctaaagc aaatttaata gagtttaaaa gtcaaagcac ccttaaaacc
     2161 cctattgaca taagtaaaaa tccaaaaaaa cttaaattta tagagcttaa agccgcacaa
     2221 cttccaagag ccctaaatga tactgatttg gctattatta ccacaaacta tgctcttgga
     2281 gcaggcttaa accctttaaa agatggtatt tttatggaag ataaagatag tttatatgct
     2341 attgttttag ctacaagaaa aggtgaagaa acaagtcaaa aaagtcttgt tattaaagaa
     2401 attttaacaa gcgataaaat taaaaatttt atcatagaaa aatacaaagg ctctgttatc
     2461 cctacttttt aactctatac aaagccttct aaaggctttg ttaaacttat aaaagctaaa
     2521 atactattta ttgcattata attcttagga taaaaatgaa aattattttt ttaacttttt
     2581 ttattgtgat aaattatatc caagcagcta gtttagaaga aatcaaaaca gcactagcta
     2641 aagaatttag aaataatttt cctaaaatta taatttctca aattgattta aaaataacat
     2701 cattgcctaa agattttgat caatatgaat ttctaagaat cgctaatggg cgttttaatc
     2761 aagcacaagg ctttttaagg gctgaattta aaactccgca aaatatacaa aaaaatgtat
     2821 tttttagata tttcattcaa gcaaatttag aagttttaaa aagcgaacgc gctataaaaa
     2881 gaggagataa acttggagct tttgactata aaagcgtatt gattgatttt gataaagttc
     2941 ctttaaatgc cttaacctta gatgatgtag ataatcttgt agctaaaagc aatattaaca
     3001 aaaacgccat tttaagagca aatatgttta aaaccacagc tttaatacgc cgaaatgatc
     3061 ctataatcgg gattttaagc gaagcaaatg ttgatgtttt aatcgaactt gtggctttgc
     3121 aaagtgcaaa tatgggcgaa aggattcgtg caaaaaacaa agaaggtaaa gttatgcaag
     3181 gcatcgtagt gggtaaaaat aggatgatta tacaatgaag gttttattag gaatttctgg
     3241 ttcaagcagt gtcaatttag gcttaaaatt attaaaaaat ctagaaaacc aatgcgaact
     3301 ttattgcatt ttaacccaag gtgcaaaact tagcttcaaa actgaaaatc aagcaaattt
     3361 agaagaaatt tgtcaagaaa attttaaata cacttatttt ttagatgata aaaatttaag
     3421 tctaagtgta gcaagtggat cttttggaat agaaaaaacc atcattgctc cttgttcaat
     3481 ttcaagttta gcaaaaattc acgctggttt tgcagacact cttttaatgc gtgctgcagc
     3541 agtggcctta aaagaaagaa aaaaacttat cttaggcgta cgcgaaatgc ctttttctac
     3601 tttaaattta gaacatatgt taaaacttag ccaaatggga gttattatcg cccctcctat
     3661 tatcgcaagc tattctaaag caaacaatct agagcaaatg gaaaatttta tcgcaggtaa
     3721 atggttagat cttttagaaa taaaacacaa tttatatgaa aaatggcaaa atttttagtt
     3781 taaatttgtt atatttttaa aaaaaattgg agcaaaaatg acttgtttat atcctgggac
     3841 ttttgatcct attaccaacg ggcatttaga tgttataaaa cgggctttaa aaatttttga
     3901 tgaagtcatc gttgccatag caaaaagtga acataaaaaa ccttgctatg atttagaaaa
     3961 acgcaaagaa ctagccctgc tcgcaacaca aaatttaaaa aatgttaaaa tcattgcttt
     4021 tgataattta cttgtagatt tagccaaaga attaaaagtt aatactataa tccgtggact
     4081 tagagcagtg agtgattttg aatacgaatt gcaaattggc tatgcaaatc acgcactttg
     4141 ggaagatatg gaaaccattt atcttatgcc aagtctaaaa catgctttta tttcaagttc
     4201 tattgtgcgt tctatagtag cacatggggg tgatgtaagt tctcttgttc caaaagaaat
     4261 tctacctttt ttaaaggatc aatcttgtat gtagtttttg aaggtattga ctgcgtagga
     4321 aaaagtacgc aaatttcact tttaaaagaa atttacaaag atgccatttt cacactcgaa
     4381 cctggcggaa cagaacttgg aaaacattta agagaaattt tacttaataa aactcatcct
     4441 attaacaaaa gagctgaact cttgcttttt ttagctgatc gtgctcaaca ttttgaagaa
     4501 atcttaaaaa ccaatcaaaa caaactcatt attagcgata gaagttttat ttcaggcatg
     4561 gcttatgcca aagattttga aaacgatttt ctttttgctt taaatagttt tgctttagaa
     4621 aatttttttc cacaaaaaat tatcttttta aaaggagatg caaaccttat ccaagaacgc
     4681 ctcagtcaaa aagaactaga tagtatagaa aaacgtggca ttgagtattt tttaagtgta
     4741 caggacaaac tcgaaaaagt gcttcatttt ttaaaagaaa aaatttctgt agaaatttta
     4801 acacttgacg caaaagaaag taaagaaaaa ttacaccaac aaataaagga atttttacaa
     4861 tgattaacgc tttaaaagga atgaaagatt tattagataa agatgcatat tattatgaaa
     4921 aagtgattaa aacctgcgaa aaagtagcta aaaactatgg ctttactttt atcaatacac
     4981 cgcatttaga actttgcacc ctttttaaaa gaagcgtagg agaaagttct gatatagtag
     5041 gtaaagaaat gtatgaattt atcgataaag gtgaaaatca tgtttgcatg cgtcctgaag
     5101 gaactgctgg ggtggtgcgt gcctatatag aaaaaaaact cgataaaaac actagtgtga
     5161 aaagatggtt ttatcatggt tctatgtttc gttatgaaag acctcaaaag ggtcgcttaa
     5221 gagaatttca tcaatttgga gttgaaagcc ttggcatacc taatgtttat gaagatgcaa
     5281 gcattatttt aatgctagta gaaattttct cacgccttgg tattgatttt aaacttcaac
     5341 ttaattcttt aggctgctca caatgcttgc caaaataccg cgataggctc gttgaattct
     5401 tagattccaa agaaggtttt tgtgaagatt gtttgcgtag aaaaaattta aatcctattc
     5461 gtgtcttaga ttgtaaaaat gagcattgtc aaaatttgct tgaaaatgct ccgcttttga
     5521 tcaataattt atgcacctct tgccaaaaag actttgaaac actgcaacaa attttaaagg
     5581 ataatggagt taaatttgag ttagattcaa aacttgtgag gggtttggat tattattcta
     5641 aaacggcttt tgaatttata agcgatgaaa taggagcaaa ggctgctatc gcaggtggag
     5701 gacgctacga tagacttata gagtatttag gtggaaaaag tggctatggt ataggttttg
     5761 ccatgggtat agaaagaatt ataactattt tagaacaaaa agaagaaaag attcaaagag
     5821 aaggaattta tctttgtgct atggatgaaa tttatatcca aaaacttttg catatcgcta
     5881 caaatttaag aaaagaatat aaagtacttt taagctatga agcaagaaaa ctagccaaac
     5941 atcttgaaaa cgcggataaa aataatactg aaatttttct ttgcatggga gaaaatgaag
     6001 cacaaaatga aagtttgttt tataaaaatt tagcaaaaaa agaagaaaaa atgattaaaa
     6061 tttcagactt aaagaaggtt ttatgatgga ttatggtatt gatatttggg gaaatgaaaa
     6121 tttcattatc aaaaatggta aagtttgtat caattacgag aaaaaacctg ctattattga
     6181 tatagttaaa gaattaagag atgatggata caaggggcct ttacttttaa gatttcctca
     6241 tcttatccaa aaacaaattg aaaatattta cggaaatttc aataaagcaa gaaaggaatt
     6301 tggctataaa ggaggattta acgctgttta tcctttaaag gtcaatcaat accctggttt
     6361 tgtaaaaaat cttgtaaaac ttggaaaaga ctataactat ggacttgaag caggttctaa
     6421 ggcagagctt ttactcgcta tggcttataa taacgaaggc gcacctatta ccgtaaatgg
     6481 ctttaaagat agagaactta tcaacatagg ctttatcgca gctgaaatgg gacataatat
     6541 cactttaacc atagaaggac ttaatgaact tgaagctatc atagacatag ctaaagaacg
     6601 ctttaaacct aaaccaaata taggcttacg cgtgcgtttg cattctgctg gagttggaat
     6661 ttgggcaaaa agtggtggga ttaattctaa atttggactt acatccactg aactcataga
     6721 agcggtaaat ttactcaaag aaaacaaact tttagaacaa tttaccatga ttcactttca
     6781 tctaggctca caaattaccg aaattcaccc cttgaaaaaa gccttaaatg aagcaggaaa
     6841 tatctataca gaacttagaa aaatgggagc taaaaatcta aaagctatca atcttggtgg
     6901 cggtttagct gtggaatact cacaatttaa aaatgaaaaa agtagaaatt acaccctaag
     6961 agaatacgct aacgatgtag tttttatcct aaaaaacata gccgaacaaa aaaaagattt
     7021 agagcctgat attttcatag aaagtggacg ttttgtagca gctaatcacg ctgttttaat
     7081 cgctcctgta ttagaacttt tttctcaaga atacgcagaa aacaaactca tacttaaaaa
     7141 acaaaatcca aaacttatcg atgagcttta tgatctttat aaaagtataa aaccttccaa
     7201 tgctttagaa tacttgcacg atagcataga tcatttagag agtattttaa ctctttttga
     7261 tttgggctat gtggatttac aagatcgttc caatgctgaa attttaactc atttgattac
     7321 aaaaaaagcc atcttgcttt taggcgataa gcaaaatcct gcggatttac ttgccataca
     7381 agatgaagtg caagaaaggt atttggtaaa tttttcgctc tttcaaagca tgcctgattt
     7441 ttggggttta gaacagaatt tccccatcat gccacttgat cgcttagatg aagaaccgac
     7501 acgaagtgca agtatttggg atataacctg tgatagcgat ggagaaattt catactctaa
     7561 agataaacct ttatttttgc acgatgtaga tgtagaaaaa gaaaattatt ttctagggtt
     7621 ttttcttgta ggtgcctatc aagaagtact tggaatgaaa cacaatcttt ttactcatcc
     7681 tactgaagct attataagca tcaatgaaaa aggctatgaa gtcgagggga ttatagaagc
     7741 gcaatccata cttgatacct tagaagattt agactatgat atacacgcta tcatggatat
     7801 acttaatgaa cgcataagta attctaagct tgtaaatgat aagcaaaaaa agcatatttt
     7861 aggcgaactt tatcttttct taaatgataa tggttattta aaaagcatag gagtttagat
     7921 gaatttttgg ggtattataa aagaagattt ttctcagcca aaggcacaag atccagcttt
     7981 taattcttgt atagaacttt tttttaatta ccctggagta tgggctgtag taaattaccg
     8041 ctttgcacat tttttttaca taagaaattt taaacgcatt gctagaatga ttagcggaat
     8101 ttcacaattc ttaactgggg tagatttgca ccctggagca gaacttggaa ggcgtatttt
     8161 tatagatcat gccaatggag tggttatagg tcaaacagca attatagaag atgatgtttt
     8221 aatttatcaa ggcgttactt taggtggaac aagccttgaa aaaggtacta aacgccatcc
     8281 aaccataaaa aaaggagtga tcataggctc aggcgcaaaa gtacttggca atatcaccat
     8341 aggagaaaat gccaaaatag gctcaaatgc tgtagtggtt aaagatgtag gtgcaaattt
     8401 aactgccgtt ggaattcctg cttatattat cgaagagcgt aaaaataaaa acattagagc
     8461 tatagatgca aattgcgatg acaaactaga aaagttagaa aagaaaattt tagaacttga
     8521 aaatcttata ttaaaacaac ctgaatcaca aaaataataa ttttttataa tacataaaat
     8581 tatatgtatt attatgcgta ttaatttttc ctaaaaaatt aatacaaatt ttcacattta
     8641 ttgaaattta taactcattt ttaaattaaa tttattgtaa aaatgcaatt ttctgctaaa
     8701 attaaacaaa aattattaag gattgaaaaa tgcttacaaa aagatctcaa gttttagaag
     8761 aatctatcac tttagctatc actgcacttg ccaatgaact taaagccaaa ggcgaggata
     8821 tcattagttt ttcagcgggt gaacctgatt ttgacacacc acaaaccatc aaaaatgccg
     8881 ctataagtgc tattgaaaaa ggatgtggaa aatacactgc tgttgcagga attcctgaag
     8941 tattaaaagc tattcaaacc aaatttaaaa aagataataa tcttgattat gaaacaaatg
     9001 aaatcatcac caatgtaggt gcaaaacact ctctttttga atgtatagaa tgcttagtag
     9061 aaaaagatga tgaagtgatt atccctagtc cttactgggt aagctatcct gaaatggtaa
     9121 aatttgcagg tggaaaacct gtatttatag aaggcttaga agaaaatggc tttaaaatta
     9181 ccgctgaaca actaaaaaaa gctatcacag ctaaaaccaa ggttttaatg ttaaattctc
     9241 cttcaaatcc tgtaggatcg atttattcta aagaagaatt aactcaaatt gctaaagttt
     9301 tagaaggaac tcaaattacc gttttaagtg atgaaatgta tgaaaaactt cgctatgatg
     9361 gttttgattt tgtagctttt gcaagtgtaa gcgaagacgc tttaaaacgt actgtgacta
     9421 ttaacggact tagcaaatgt ggagctatgc caggatggcg ttttggctat atggcaagca
     9481 aaaataaagc cctaatttca gccgttaaaa gacttcaagg acaaagcact tcaaatattt
     9541 gctccattac tcaacatgca gccattcctg ctttaaatgg gaaatgtgat aaagatatag
     9601 aaaaaatgcg tcaagccttt gaaaaacgcc gtaacttagc tttagatatg cttaaacaaa
     9661 tcccaaatat cagtgtttat aaaccagaag gtgcttttta tctttttgta aatatacaaa
     9721 aaatagaaaa agattctatg aaattttgcc aaaaattact tgaacaagaa aaagttgccg
     9781 ttgttccagg cataggtttt ggcacggatg gatactttag actttcttat gccacaagcg
     9841 atgaactcat cgaaaaaggt ttagaaagaa taagtcattt tattgcaaat tataagtagt
     9901 ttccatgaaa agacctttac cttttatact tgcagctaca aataatggat ctatgattat
     9961 taatcatctt gatagacatg atacgcctca aggaagttat ggagttggtt ttcagttttt
    10021 aaattacggc agttttgatc cagaggaaat tgatctttgt attaatcttt taaaattacg
    10081 cagagaatac tacaaagata atgtctttgc catagattgc ggtgcaaata ttggagctca
    10141 cactattaag tgggctatag aaatgcataa ctgggggggg gtattagcct ttgaagcaca
    10201 agaaagactt ttttatgctt tagcaggaaa tatagcaatt aataattgtt ttaatgctaa
    10261 ggcaatacat gcagccattg gaaaccctga aaaaaatcaa aatgaacttg aaattttaac
    10321 tcctgattat actcaaaaag cttcttttgg aagcttagaa ttaaaatctc aaaacaataa
    10381 tgaatttata ggacaaatac ctcaaaaaaa agaaaaagtt ccttatttaa aacttgataa
    10441 tttaaatttt aaaagattag atcttattaa aatagatgta gaaggcatgg aacaagaagt
    10501 tatattagga tgtttaaatc atattaaaac ttttaaacct attttacaaa ttgaaattat
    10561 taaatcaaac actcgagata ttatcaatat attagaaaat ttagaatatg aaatttttca
    10621 atccggaatt aatatcttgg ctatttataa ggcagatcct gtaattaacc atttaagttc
    10681 ttcaaaccca taaaccttaa aataaaaggc ttatggctaa ggctttttaa gcacagcatt
    10741 taccctttga acactatctg atttatttaa actcaatctt attatagaat tttccaatcc
    10801 acctaaagaa tgcgctacat ttgcctctag gcttatcata tccaaagcat ttaattcaaa
    10861 tttttccttt tccacttcaa accaaatttt accgcttaaa acttgaacat gtatagcaaa
    10921 aggagcttta tgctctttca tcacgctatc tttagctaat aaaatttgaa tttctttacc
    10981 tttttcatta tcaattaaaa cattgatttt cacttctttt gggctaaatt ccgctccatt
    11041 ccattgaatg attttcacaa aatctccttt tttagtttta taaaactata gcaaaagcca
    11101 aaatataaat tataaacttg tgttaattta ttcttctttc caccaaaaat cctgtttaaa
    11161 tttagctcct acttcataag cctcgcccat ttttggtgtg ataaggggta aatctaaatt
    11221 ttcataaaga aattttacca cctcattcca tgcatgagtt cctgctaaaa atctccccca
    11281 atgtataggc atgacagctt ttgcattaag atcttttgct tcttttaaaa tttgctcagg
    11341 aaaagagtgt gaatatggcc aggcgatatt aaattgtccg ctttcaagac aagctaagtc
    11401 aaaatctcca aaatactcac ctattttttt aaaatgtgta aaataccctc catctgcgct
    11461 aaaaaacact ctcttatcta cacttaaaaa ttccatcaca aaagaagccc aaagggtttt
    11521 gtttttacca tctcccctgc ttgaactgtg ttgtgcaggt gttgcaatga tttttaaatc
    11581 accaaattct atgccgctcc accaatcaag ctctatgatt tttttctcac tcaccccata
    11641 gctttttaga taatttccca cttttaaagg tgtgataaaa aatcgtgctt tttcttttaa
    11701 agctttgaca ctcttagcat ctaaatgatc aaaatgtgaa tgcgtgataa tcacagcaaa
    11761 aatttcatta aaatcattta cattataaac aggagcattt ttaaaagcct tgttaataaa
    11821 agaaataggc gaagcatgag tgttaaaaac aggatcgatc aaaattttat attctttaaa
    11881 acttataaaa agcgaagaat gtccaagcca agtaatatgc ggagtgctaa aaccactcaa
    11941 atcaggcttg aaaaaaggta acttaaaaga agggatggca ttttttggat aaagataata
    12001 atacctcaaa atttctttaa aagacacttt aggagttata agactgtgct cattttcatt
    12061 aagaaaaatt tcatattttt taccctgcac ttttttagct tttgatcgtt gtgtattgga
    12121 aatatcaaag gttttaaatg ataaattcaa at
//
LOCUS       DARGEX010000051        11822 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.051, whole genome shotgun sequence.
ACCESSION   DARGEX010000051 DARGEX010000000
VERSION     DARGEX010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11822
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.051"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            108..803
                     /gene="ung"
                     /locus_tag="SF010_001080"
     CDS             108..803
                     /gene="ung"
                     /locus_tag="SF010_001080"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG8230016.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDWKIV"
     gene            923..1618
                     /locus_tag="SF010_001081"
     CDS             923..1618
                     /locus_tag="SF010_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG8230017.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(1812..2936)
                     /gene="cydB"
                     /locus_tag="SF010_001082"
     CDS             complement(1812..2936)
                     /gene="cydB"
                     /locus_tag="SF010_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG8230018.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2936..4498)
                     /locus_tag="SF010_001083"
     CDS             complement(2936..4498)
                     /locus_tag="SF010_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG8230019.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(4499..4732)
                     /locus_tag="SF010_001084"
     CDS             complement(4499..4732)
                     /locus_tag="SF010_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG8230020.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            4845..5651
                     /gene="cdtA"
                     /locus_tag="SF010_001085"
     CDS             4845..5651
                     /gene="cdtA"
                     /locus_tag="SF010_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG8230021.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNVVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            5648..6445
                     /gene="cdtB"
                     /locus_tag="SF010_001086"
     CDS             5648..6445
                     /gene="cdtB"
                     /locus_tag="SF010_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG8230022.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            6456..7025
                     /gene="cdtC"
                     /locus_tag="SF010_001087"
     CDS             6456..7025
                     /gene="cdtC"
                     /locus_tag="SF010_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG8230023.1"
                     /translation="MKKIITLFFIFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            7197..8879
                     /locus_tag="SF010_001088"
     CDS             7197..8879
                     /locus_tag="SF010_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG8230024.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            8999..9739
                     /locus_tag="SF010_001089"
     CDS             8999..9739
                     /locus_tag="SF010_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8230025.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            9736..11175
                     /locus_tag="SF010_001090"
     CDS             9736..11175
                     /locus_tag="SF010_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG8230026.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRSKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFASVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            11168..>11822
                     /locus_tag="SF010_001091"
     CDS             11168..>11822
                     /locus_tag="SF010_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG8230027.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLAEMKQKMSDNKYIVENATKDTLEEKINEIVARYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         4251 a         1858 c         1909 g         3804 t
ORIGIN      
        1 tttttattaa tataaaaaat tttatttact tcaaaaaaaa ttaatatatt tttgcaagct
       61 tttttgttag aataaaattt ttaataattt aaataattag ggataatatg gaagaaatta
      121 caataaacat agataagatt aaaataaatg atgactggaa agaattttta agagacgaat
      181 ttcaaaaaaa atattttcta gaaatcaaaa aacaatacct aaatgcgatt aatcaaaata
      241 tagttattta tccgcctgca aatttaatct ttaatgcttt taatttatgt cctttaaaag
      301 aaattaaaat tattatccta ggacaagatc cttatcatca accaaatcaa gcaatggggc
      361 ttagtttttc ggttccaaaa aatgtaaaaa tcccaccaag tcttaataat atttttaaag
      421 aattgcaaaa tgatttaaac atcactccag caaaaagcgg agatttaagc tcttgggcaa
      481 aacaaggagt tttgctctta aattctattc ttagcgttga agcaaataaa gcagctagcc
      541 atagttcgtg gggttggcaa gaatttagtg atgctataat acataaatta agtaatgaaa
      601 aatcagggct tgtttttatg ctttggggaa attacgcaaa aaacaaggag attttgattg
      661 ataatactaa gcatttgatt ttaaaagcag ctcacccaag tcctttagct agaacaggat
      721 ttttaggttg taagcatttt tcaaaggcta atgaattttt aaaaaaagtt ggtaaaattc
      781 ctatagattg gaaaatagtt taaaaaatta ttttaaactt taataaaaat attaaaatat
      841 atttatttat ttaaaaataa atcatatttc tatgaaatat attgtaataa aacgactcaa
      901 aaattaattc ttaaggagaa aaatgaaaac cattggtatt ataggcggaa tgagttttga
      961 aagcactatt acttattata aaacaataaa tcaagctata aatgataaat taaaatcttt
     1021 aaattctgca aaaattttac tttacagtgt taattttgaa gaaatagaaa atttacaaag
     1081 ccaagataaa tggcaagaag ctgcacaaat tttgactcaa tgtgctaaaa aattagaact
     1141 tgcaggggct aattttataa taattgcaac taatactatg cataaggttt ttgatgaaat
     1201 tcaacaaaat ataaatatcc ctattttaca tattgcaaaa agttctgcta aggctttaaa
     1261 acaagaaaac atacaaaaaa ttggtttatt gggtactaaa tacacaatga cgcaggattt
     1321 ttataaaaaa atgctgattg aagaaaatat tagcgttatt actcctagtg atgaagatat
     1381 aaaaatcgtt aatgatatca tttttaatga gctttgcaaa ggtgaaatca agcaagattc
     1441 taaagaaaaa tatttaaata ttataaaaaa actacaagaa aaaggggcaa aaggagtgct
     1501 tttagcttgc actgaaattg gtttattaat atctaaaaat gatacaaata tcaaaatttt
     1561 tgacacaagc cttattcacg cccttgatgc tgctaatgaa gctttaaaag atttatgatt
     1621 aaaagatgcc caaaaatggg caaattgcaa tattttgaaa agatttatac ttatatcggt
     1681 ttaaatctta tcttgcttta tagtttgcta tctttttcta attgattgat atttagcatt
     1741 ataaatttat agctcagata aattactaaa ggccaagcca ataaaaacaa agcatgtaac
     1801 attttttctc cttaatatgc gtgatcatca tttgcgattt cttcgcgtgt aatttttact
     1861 ttatccattg cattccaaac atagataata taagctaaaa caaaaggtac aagtaaagac
     1921 acataagcca tgacgcttag agtataatag cttgaacttg cattttttaa agttaaagaa
     1981 ctttgcaaat cacttaaaga tgggtaaaaa gcactttgac ctaaaccaat gcttgataat
     2041 aaagcaaaaa ctgttaaaac cgttccaagt cctagggtaa aaatagcttt agagcaacct
     2101 tttgctcctt gaaacatacc taaaagcact aaaatcacac cgatagcaag caaaacagca
     2161 aaaatcattt gatttaagaa attatataaa tataaattcg cactcatgct tacaactcca
     2221 tttgcatcta cactaaaacc atcttttaag aaaatccacg ctaaaaaacc taagaaaaaa
     2281 ggtaaaaata aaatactatt gatcataagt tttttcatag ctcttatttt gatattctca
     2341 tcattgatat tgtttataaa atacgctgcg cctaaaagcc ttgctaaaaa tactaaagct
     2401 aagcctaaga gataattaaa aggattaagt aaaagttcta agccgtgcaa aggattttgc
     2461 caagaaacaa aattatgctc atttaagata aattcagaac cgctaaaaaa gctacttact
     2521 gcaactccga ttaaaaacac acctaaataa ccattaattt taagaaaaat ttcataggtt
     2581 ttagagccat aaacattatt ttcttttttg cgatattcat aagccacagc ctgtaaaata
     2641 aaacaaaata aaatacaaag ccaagcccaa taagctccgc caaaacttgt actataaaaa
     2701 agtggaaaag ctgcaaaagc tgctccgcca aaaagtacga gagttgtaaa accaagctcc
     2761 catttacgcc ctaaagaatt gactagcatg gttttttcaa gctcatcctt gctaagctca
     2821 tcgattaaag tctgtccacc ttggacaaaa aacataaaaa ccaaaagtcc gccgagtaaa
     2881 cttaaaatca accaccaata aatttgcaaa ccttcaagtt ctaaaccaaa aaacattatt
     2941 tttctccttt gcccataagt ggagtatgtc ctgcatgtgc gtcaaaacct tttttaatct
     3001 gagtaagcat gattttaact tctgcaatca ataaggctgt aaaaagtact gcaaaaatcc
     3061 aaaatgaaat ttgaacattg acttttccaa gttgtgttgc tgcgatatgt acaggaagca
     3121 agtcttgaat tgcccaaggt tgtctgccta cttcagcaac aatccaacct gcttcagcgg
     3181 caatataacc caatggaatg gataacaaac acacccaaag tacttttcta aatttctcaa
     3241 tatcatttgc catggtaaga taaagcgtaa cgatgaaaag taaaaagaaa aaacttccta
     3301 aagcaaccat gatatgaaag ctataaaaag ttaaagccac aggtggaata gtatcgcttg
     3361 gtttttctaa atatccataa ccaaaatctt taaaatgagt ttctaaaatg gatttgtgat
     3421 ttgccatagc tattgtatca ttgttttctt tagcaagttt atagtctttt agagcttgta
     3481 tagcgatttt tcctctatcg atacgatttt gcataggttc tatacctttg ctttcatttc
     3541 catagatcaa atcttcaatt cctggaacaa aagaatttgg atcacggttt cctaatatag
     3601 aaagagcgta aggtatagta atgtcaaata aaaacacact ttcgttatta tctatggttt
     3661 ttttaggatt taaaattcca aaaggtacaa gtcctgcacg atgttcacct tgataaaccc
     3721 cttccatagc tgcaagtttc ataggttgag tttgagttac acggtaagcg ctttcatctc
     3781 cgctgaaaaa caaaaagatt gaacaaacca aaccaaaact agctcctaca actaagcttt
     3841 ttttagcctc gataatatgg cgtcctttta acataaacca agctgaaatt cccattacaa
     3901 ataaagctga aatcacataa ccactgccta tggtatgtaa aaattttgaa atagctacag
     3961 gagaaagtgc tacttcaaaa aagctttgca tttcatttct tgctgtgtca gggttaaagc
     4021 tcattcctac aggatattgc atccaaccat ttgccactaa aatccaaaaa gcagaaagat
     4081 tacttcctat agccacacac caagttgaaa gtaagtgaaa acccttgctt actttatccc
     4141 agccaaaaaa cataactgca aaaaaagtag cctctaaaaa aaatgccata ataccttcaa
     4201 ccgccaaagg tgcaccaaaa atatcaccca caaaccagct ataatttgcc cagtttgttc
     4261 caaattcaaa ttccattata atgcctgtag ctacaccgat agcaaaattt atagcaaata
     4321 atgaaagcca aaatttggtg atttttttcc atctttcatt tttagttttt acatagatgg
     4381 tttccatgat agcgatcata aaagacaagc ctaaggttaa aggcacaaac aaaaaatgat
     4441 aaagtgcagt taaagcaaac tgcgctcttg accaatcaac gctactaagt tcgttcattt
     4501 attttccttc gagtgtaaga tttttgagta caaaagtgct tttttctttg tcgcttttaa
     4561 aaatagaatt aaaatttaca tcaaaaacaa aaagttttaa aatcacaaac ataacaaaaa
     4621 gtttgataaa aataattttc caaagggtct ttccaagagt taaattttta aaaccttctt
     4681 tgtaaaaatt aaaaatttga gagatgctaa aatataagtg tttaagatac atgtaaattc
     4741 tacctttaaa aacaacaaaa taaaacattt ttaaaaagcg gaaaattata atgaaattta
     4801 tgttattatt ttcttaaaaa tttaaataca tatcaaggtt tttaatgcaa aaaattatag
     4861 tttttatttt atgttgtttt atgacttttt ttctttatgc atgttcttct aaatttgaaa
     4921 atgtaaatcc tttggggcgt tcatttggcg aatttgaaga tactgatcct ttaaaactag
     4981 gacttgaacc tacttttcct accaatcaag aaattccaag tttaattagc ggtgctgatt
     5041 tagtacctat tactcctatt accccacctt taactagaac aagcaatagt gccaacaata
     5101 atgtagtaaa tgggatcaat cctcgcttta aagacgaagc ttttaatgat gttttaattt
     5161 ttgaaaatcg ccctgcggtt tctgattttt taaccatttt aggccctagc ggagcagctt
     5221 taacggtttg ggctttagca caaggaaatt ggatttgggg ctatacttta atcgatagta
     5281 aaggatttgg cgatgctaga gtttggcaac ttttgcttta tcctaatgat tttgcaatga
     5341 ttaaaaatgc caaaaccaat acttgtctta atgcttatgg taatggaatt gtccattatc
     5401 cttgcgatgc aagcaatcac gcacaaatgt ggaaacttat ccctatgagc aatacagcgg
     5461 ttcaaattaa aaatttagga aatggaaaat gcatacaagc acctattaca aatctttatg
     5521 gtgattttca caaggttttt aaaattttta ccgtagagtg tgcaaaaaaa gataattttg
     5581 atcaacaatg gtttttaact actccgcctt ttactgcaaa acctttatat cgccaaggag
     5641 aggtacgatg aaaaaaatta tatgtttatt tttatctttt aaccttgctt ttgcaaattt
     5701 agaaaatttt aatgttggca cttggaattt gcaaggctca tccgcagcca cagaaagcaa
     5761 atggagtgtt agcgtaagac aacttgtaag tggagcaaac cccttagata tcttaatgat
     5821 acaagaagca ggaactttac caagaacagc cactccaaca ggacgccatg tgcaacaagg
     5881 tggaacacct attgatgaat atgagtggaa tttaggaact ctttcaaggc ctgatagggt
     5941 ttttatttat tattctcgcg ttgatgtagg agctaatcgt gtaaatttag ctatagtttc
     6001 aagaatgcaa gctgaagaag tgattgtttt acctccacct actacagttt caagacccat
     6061 tataggaatt cgcaatggaa atgatgcttt tttcaatatc catgctttag ctaatggagg
     6121 aacagatgta ggagcaatta tcacagctgt agatgcacat tttgcaaata tgcctcaagt
     6181 taactggatg atagcagggg attttaaccg tgatccttct actataacaa gtacagtgga
     6241 tagagaatta gcaaatagaa ttagagtggt ttttccaact agcgcaactc aagcaagcgg
     6301 agggactctt gattatgcaa ttacaggaaa ttcaaataga caacaaacct atactccacc
     6361 gcttttagct gcaattttaa tgcttgcaag tttaagatct catatagttt cagatcattt
     6421 tccagtaaat tttagaaaat tttaggacat ttaatatgaa aaaaattatt actttgtttt
     6481 ttatatttat aactttagcc tttgcaactc ctactggaga tttgaaagat tttaccgaaa
     6541 tggtttctat aagaagctta gaaacgggaa tttttttaag cgcctttagg gatacctcaa
     6601 aagatcctat tgatcaaaat tggaatatta aagaaattgt tttaagcgat gagttaaaac
     6661 aaaaagataa attagctgat gaacttcctt ttggttatgt gcaatttaca aatccaaaag
     6721 aaagcgatct ttgtttagcc atcttagaag atggaacctt tggagcaaaa tcttgtcaag
     6781 atgatctaaa agatggtaaa ttagaaactg tattttctat aatgccaaca acaacttcag
     6841 ctgtgcaaat tcgttcttta gttttggaat ctgatgaatg tatagtaact ttttttaatc
     6901 caaatattcc tatacaaaaa cgctttggaa tagccccttg caccctagat cctatttttt
     6961 ttgctgaagt aaatgaacta atgattataa ccccaccttt aacagctgct acccctttag
     7021 aataagattt ttatcttgtt ctatttttat atttatttaa tatttatgat attactaaaa
     7081 tacacaaaat aattaataat aatacaatgt aatttacctt actctataat tcttttattt
     7141 taatttaatt ttttgttaca ataaatttat acataataat tatcaaggag gaaaaattgg
     7201 aacaaatttt aacatggcaa caaatttatg accctttttc aaacatttgg ctaagtgctt
     7261 tagtggcatt tttacctata ctatgttttt tagtttgttt ggttgtttta aaacttaaag
     7321 gctatcaagc aggtttttta actgttatac ttgctacttt agtagcttta tttgcctata
     7381 aaatgccttg gaatttagtg ggtgcaagtt ttattcaagg ctttacaaat ggtatgtggc
     7441 ctatagcttg gattatcatc gcggcaatct ttctttacaa actttctatc aagtcaggtt
     7501 cttttgaaat cattaaaaaa agcgtgatga gcattactcc agatcataga attcaagtga
     7561 ttttaatagg tttttgtttt ggttcatttt tagagggtgc tataggtttt ggtggccctg
     7621 tggctataac cgctgcactt ttagtaggac ttggcttgcg tcctttacaa gctgcagggc
     7681 tttgtcttat cgcaaatacc gctcctgttg cttttggtgc ggtgggaatt cctattattg
     7741 ctatggcaaa tcttgtcggc atagaacagc attcagtttc tgccatggta ggtagaatgc
     7801 tagttccttt aagccttact ataccttttt tcatagtttt tttaatggat ggatttaaag
     7861 gtattaaaga aacttttcca gctattttag ttgcggcgct aagttttaca actactcaat
     7921 ttttaagctc aaatcaccta ggagcggaat tacctgatat tatttcagct gtggtttctt
     7981 tagcagttac gactgtattt ttgaaatttt ggaaaccaaa aaatattttt agatttgaca
     8041 atgaaagcaa tttcactcaa gataacacct taagttttaa tcaaatttta aaagcttggt
     8101 caccttttat tttactcatt gtttgtatta tcatttggac acaaccttgg tttaaagccc
     8161 tctttgacaa ggacggaatt ttaagctata caagtattac tttacaattt agcaatatca
     8221 caactggaat tttaagccct tctatcacag gcataggaga agctaagcct ttatctttgg
     8281 ccttgggtgt agatttaatc aatggaaaaa ccgtagctca agcaggaaca gcgattttac
     8341 ttgccgcttt tctaactata gctattttaa aaatcaaagc cgaagatgct gcagaatgct
     8401 tttgggttac cttaaaagaa atggctatac cttgtatcac cataggtttg gttgtggcct
     8461 ttgcttttat ctctaaaaat agtggtatga gcactacttt aggacttgct tttgcacaca
     8521 caggtgatgc tttttctttc ttttcaccaa tcattggctg gataggggta tttttaacag
     8581 gctctgatac aagtgctaat ttactttttg gaaccttgca acaagtaagc gctcaaaaac
     8641 taggtattag cgaagcttta tttttagcag ctaattcagt aggtggggtt gttggaaaga
     8701 tgatcagtcc acaaagcatt gctatagctt gtgcagcggt tggacttgtg ggaaaagaat
     8761 ctgatctttt caaattcaca ttaaaatatt ctgtagcttt tattgtttta ataggaattt
     8821 ggacttgcat tatagctttt ttcttacaag gaatcatccc tgaagttata gtgaaataat
     8881 taaaaattta agttttattt caacaaatat tcatttttag aatatttgtt ggaaatttta
     8941 ctttgctttt atttttacag gattagaata tttatcctaa attatcccaa aaggagagat
     9001 gatgaaaaag gtgtattttt acgccacatg cttaggaact gctgctatgc aacaaagcgt
     9061 tttaaatgca ataaaacttt taaggcgtga aggtattgaa gtgattttta aaaaaaatca
     9121 aacctgttgt gctcaacctt cttttaactc aggttatttc gatgaaagtc gtgagattgc
     9181 tttatataat gtagatttat ttgataaaga ttatcccatc gttgtgccaa gtggttcttg
     9241 tgcgggtatg atgagtcatg actataaaga actttttaaa aacagacctg aattttctaa
     9301 agtcaaagat tttagctcta gggttataga actttcacaa taccttgatg aagttttaaa
     9361 agtagattat gaagataaag gtgcacctat aaaagtaact tggcattcta attgccatgc
     9421 tttaagagtg caaaaaagca tacaagcaag caagaatctt atcaaaaaac taaaaaatgt
     9481 agaattagta gaacttcaat acgaagaaga atgttgtggt tttggcggaa ctttttcagt
     9541 aaaagagcct gaaatttcaa atgctatggt aagaagtaaa attaaagata tacaaaatag
     9601 cggtgcaaaa tatctcatca gtggcgatgg aggttgtctt ttaaatatag atggtacaat
     9661 gaaaagaatg ggtttagata taaaaggcat acatttatat gactttttac ttaaacgctt
     9721 agaaggagaa agactatgag tcaaaaaatt cctcacgaac aaatcgttca aattaaactc
     9781 aatgacaaac aaatgcaaga aaatttaatg actgccatgc atactttaca aaaaaataga
     9841 ctcaatgtta ttgatgctag atttaaagac tggcagggtt taagatctaa agctaaacaa
     9901 gctaaaaaca atgccttaat gagtttagaa gaaaggcttt tagaatttga aaaaaatgct
     9961 acaaaaaatg gcattaaagt gcattgggca agtagtgatg aagatgcctg tgaaatcgtc
    10021 tatgaaatca tgaaagaaaa aaatatcacc aagcttttaa aaggtaaatc tatggcaagc
    10081 gaagaaatag gcctaaatca ctacctagaa aaaaaagggt taaaagctat agaaaccgat
    10141 cttggagagc ttattttgca acttaacgaa gagcctcctt tacatatagt tgtacctgcc
    10201 atacatagaa accgtcatga aatcggagaa attttcaaag aaaaattagg agcaaattta
    10261 gaaaacgatg aacctgaaag tttaaatgcg gtagctagag aacatttaag aaaagatttt
    10321 gaaggcttaa aacttggact tagtggggtc aattttgcca tgtcaagaga aggggctttt
    10381 tggcttatag aaaatgaagg aaacggtaga atgtgcacta cagcacctga tattcatatc
    10441 gcactttgcg gcatagaaaa agtcatggaa agctttgaag atgcggctac tatggtttct
    10501 ttgctcactc cttcagccac aggacaattt ataccaactt ataacaatat cattacaggc
    10561 cctagaaaaa atggggattt agatggccct aaagaagtac atgtgatttt atttgatcac
    10621 aatcgctcta aaatgttagc tcatgaggat tattatgagg ctttgcgttg tattcgatgt
    10681 ggggcttgta tgaatttttg ccctgtttat gatcaaatcg gcggacatgc ctatcaaacc
    10741 acttatccag gacctatagg agaagtaatc agtcctaata tttttggtat agatcataca
    10801 ggagatattt tgaatttctg ttcactttgc gggcgttgtt ctgaagtttg tccagtgcaa
    10861 attcctttgg ctgatcttat tcgcaaatta agatgcgata aaataggaca aggtaaaaat
    10921 ccacctttag gagcaaacaa tgttcatcac aatgccctag aagcctttgc ttttaaacaa
    10981 tttaaaaata tcgcaaccaa tggagataaa tggcgttttt cactttcaaa agcacattat
    11041 ttcaactggg cagtgcaaaa tttcgcaagc gttttgcctg tgattaaaaa atggtacgct
    11101 tttaaagaat tacctcaaat taaaatggat ctttataaag aagtgcaaaa actagaagga
    11161 gtaagctatg agtaaaatcg atgaaatttc aagcaaaagt aaagcaagta ttttagaaca
    11221 tcttaaaaaa gcttacaaag aaacagactt tacgcgtatt gaaagtatag atcctgtaga
    11281 acatatccaa accacccaag atatgcttgc agaaatgaag caaaaaatga gcgataacaa
    11341 atacatcgtt gaaaatgcga ctaaagatac cttagaagaa aaaatcaatg aaattgtcgc
    11401 aagatatggc tttaaaagta tgatttatgg agcggattta aatttaaatt tagaacaaat
    11461 caaagcagaa aaaaagattt gctttgataa agaaatcgaa aatttaagat ctgaagtttt
    11521 tcatagtgat ttttccatca ttcacgcaag agcaggggta agctctcacg gagttgcact
    11581 tataccttca agtaaaaccc aacctagaat gctaagcctt gcacctaaac tttgcatagt
    11641 attgcttaaa aaagaaaatg ttgttaaaag tcttagcgaa gctttaaatt tagtaaaaaa
    11701 agaaaatgaa attttaccta ctaatatctt atttatagca gggccttcaa gaacagcaga
    11761 tatagaactt atcactgttt ttggtgttca tgggccacaa attgcacata ttattattta
    11821 ct
//
LOCUS       DARGEX010000052        11267 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.052, whole genome shotgun sequence.
ACCESSION   DARGEX010000052 DARGEX010000000
VERSION     DARGEX010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11267
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.052"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(175..1206)
                     /locus_tag="SF010_001092"
     CDS             complement(175..1206)
                     /locus_tag="SF010_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG8230028.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCAEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(1285..2181)
                     /gene="sppA"
                     /locus_tag="SF010_001093"
     CDS             complement(1285..2181)
                     /gene="sppA"
                     /locus_tag="SF010_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG8230029.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(2169..3398)
                     /locus_tag="SF010_001094"
     CDS             complement(2169..3398)
                     /locus_tag="SF010_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8230030.1"
                     /translation="MFIVTARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGSFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            3489..3968
                     /gene="aroQ"
                     /locus_tag="SF010_001095"
     CDS             3489..3968
                     /gene="aroQ"
                     /locus_tag="SF010_001095"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG8230031.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            3971..4444
                     /gene="folK"
                     /locus_tag="SF010_001096"
     CDS             3971..4444
                     /gene="folK"
                     /locus_tag="SF010_001096"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG8230032.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            4454..5908
                     /gene="flhF"
                     /locus_tag="SF010_001097"
     CDS             4454..5908
                     /gene="flhF"
                     /locus_tag="SF010_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8230033.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            5901..6767
                     /gene="flhG"
                     /locus_tag="SF010_001098"
     CDS             5901..6767
                     /gene="flhG"
                     /locus_tag="SF010_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG8230034.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            6786..7142
                     /locus_tag="SF010_001099"
     CDS             6786..7142
                     /locus_tag="SF010_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230035.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            7123..7815
                     /locus_tag="SF010_001100"
     CDS             7123..7815
                     /locus_tag="SF010_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG8230036.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            7815..8894
                     /gene="fliM"
                     /locus_tag="SF010_001101"
     CDS             7815..8894
                     /gene="fliM"
                     /locus_tag="SF010_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG8230037.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            8891..9733
                     /gene="fliY"
                     /locus_tag="SF010_001102"
     CDS             8891..9733
                     /gene="fliY"
                     /locus_tag="SF010_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG8230038.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(9782..10378)
                     /locus_tag="SF010_001103"
     CDS             complement(9782..10378)
                     /locus_tag="SF010_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG8230039.1"
                     /translation="MEKILKILLFLPILTLSAKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQIN
                     RENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIWD
                     RYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(10363..11217)
                     /locus_tag="SF010_001104"
                     /pseudo
     CDS             complement(10363..11217)
                     /locus_tag="SF010_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4111 a         1772 c         1749 g         3635 t
ORIGIN      
        1 aaaaataaaa tattttattt tggataaatt tgactattcc tatcctatgc taaccaaaga
       61 tacaaaatgc tcattttgtg aaaatttttt ctcgatagaa tatagctcaa acttaaaaac
      121 aatagaaaaa gaatgtccat tttgcaataa taaaatggac attaagctta aagactaagc
      181 cttagtttta cttacaatat taataatatt tgaagctact tcatcagcaa gttctaaatg
      241 agaagtaaaa cctacacaag aacaattaat ctcgcctaaa acatatttat cattgccctt
      301 ttcatcagta tctaaaataa aatcagccgt ccaaatcaat ggtaagtcgt aattgcctaa
      361 tttttccctt accttaggaa gctcgcctaa aaacatatcc accaaagttt tccaatcttc
      421 tggcttatca tagcgatatt ttgccccact aaaaagcgta gcagaaaaag catcagcatc
      481 ttcggctggt tttttatgca ctacatttac aggggtgtta taaagcatta aaagtctgat
      541 ttcaccttct ttaatgcgcg gtaaaaaagt catatccaca agcataccat tatcacctat
      601 gatatattgc tcgcaaaaat ccataaattc cccaagctct ctatgttcta catgattatc
      661 cttagcttca gcacatttga tttttgtgtt taaaggcaaa ctatctccac taacattacc
      721 ctctacactc acacgccaaa ttccctctcc tgtagagcca cgattttgtt ttaaaaccct
      781 ttcaccttta gccaaacttt ttggaaaatt ttctttaaaa gtcttaatat catagtaagc
      841 ataagtatcg cttggaacaa gatcagtatc tgctaatttt gtaagtgcat ctttagcacc
      901 ataacctatc atagcatcag gatgaggcat gcctacaagc ttatcggcac aaagttttct
      961 taacatatca aaatactcat tttcttcttt aagattgcca ggattgatgc gagaaacata
     1021 accatcaaaa ttttctttca catatttgta aatttcatct tttttaccca cttcaaaaaa
     1081 aatcacctca gcattccaac ccttagcttt taaggcattt accataggca tggtatcttt
     1141 tctatagcca tcttcacctt tatcactccc acctttaact tcgaaaaaaa caatattttt
     1201 tttcattatt ttactcctta tctaagatat aaataattat tgcataaaaa tattacaaaa
     1261 attaaataaa aatatttata tattttatct agcgtttata aaactgctat tagttttata
     1321 agcgatttcg attaagcttt tacttatcaa gcttgatgtt tgtccttcta ggcggttaag
     1381 aaatttatca atcttatctt cttctttcca aacaggattt gaaacattag caagtttttc
     1441 aagctccttt ttagcatttt cataattact aagctcatct ataagaccaa gctccttagc
     1501 cttggcagct aaaaacactc ttgcatttgc ccattgatct tttttattaa gatctaatgc
     1561 tctttccttg gcaacaaaac ctgtaaaaag atcataactt tgatcaatta aaccctgtaa
     1621 aaaatttctt tcattctcat tccaagctct tgcaaaagtt ccagcacttt taaattcacc
     1681 cgcttgaata gtttgttctt taataccgag tttattagcc aatccgctta aatcagctcc
     1741 ttgcataatc acaccgatag agcctataaa acttgctgga ttggctaaaa ttttattagc
     1801 tccaactcct gctaaataac ttccgcttgc catagttccg cttgcataaa caagcacagg
     1861 ctttttaatt tttaaatcct ttatagctag agctagttcc atactaggag caaaagctcc
     1921 accaggagag tctataacaa aaagcactcc tttaatattg ctatcatttt tagcattgat
     1981 aattttttcc aaaaccgcag agctgtcaaa aatttcaccc tttaaatcaa tgcgttctaa
     2041 atttgcaaga ttggagcttg aatttgcact aggcattaaa atccatataa caatcaacaa
     2101 taaaacaaag gttttaaaat aagtattgat aaattttata ccgcatccta aagccttaaa
     2161 aaatgatttt aaaatttgca ttcttttcct tttataaata atttatctac ttccttagca
     2221 tttaaaataa actgcaaagg agcttgcttt ttatcacatt ctcctagctc aaatacgtta
     2281 aaatcagcaa ttttaccttt tttaagctct cctaaattta aatttaaagc ccttgcagga
     2341 taaagtgtta ccatttgcaa aagcttagag gctaactcta ataaatcaaa attcttatgt
     2401 ataagcaaat tcgcgcgcat ttcatcaagt aaagacaatg aaatatttga gctaagtcca
     2461 tcggttccta aatgaatatt taatccactt tttaaagccg tttttaaatc taagcttttt
     2521 tgacttaaaa ggcgatttga aaatgcacaa tgtgtaatag aatgtaaatt tttatctaac
     2581 cattcatatt cttttagata aacacaatgc gtaaaaagag tccttactcc tttaaaaagt
     2641 ttaacaaaat cctttggtgt ataaagaggc ttaggatgaa gtgtgaaatt ttcaagccat
     2701 tttttaaaac tccctttaga ctctctaagc cagatatttt cagccttact ttctaaaaaa
     2761 tgcgtactaa ctagtaaatt ttgcttttta gctaaatcaa gagcaaaatg agccaaacta
     2821 ggatgagttg aataaggaga atgaatcgaa attgccggga taaaaaaatc atttttaaat
     2881 ttcaaagaat tttcaaatct ttttaaaaat tcttgttttt tatcttcaac ttgattttca
     2941 tttgtaccca aaatttcatt aaaaaatact atacgcatac ccttgtgact agcctttaag
     3001 caaggatcta aatcactccc aaaacttgaa atttcaccta tagtgcctat accgcttttt
     3061 tgcatttttt taatgctttg aagtattaat tcttctttgg cctgtgcatt taacatggaa
     3121 cgagaattta taacactttt aagccaaatt aaaaattctc caaaatgtaa agttgttgaa
     3181 tttgcactaa attctaagtg tgtgtgagga tttataaaag caggtaaaat aaccgaattt
     3241 ttaggtgttt tgatgatttt agccttggga tatttttttc ttaaattatc caattcaccc
     3301 aattctaaaa ttttatcttc aaaaacaaag gcttgatttt ctagtatcgt aaaatcttca
     3361 tcgcataaaa aaagatatct tgcagtaact ataaacacga ttttcctttc aaaaattaca
     3421 ttgtagcaaa aatttatttt taaaatgtta taataaaagg ttaaaaataa atttttaagg
     3481 ttaaatccat gaaaataatg attatccaag gcccaaatgt taatatgctt ggcgtaagag
     3541 aagtgggaat ttatggtgct atgaaaatgg aagaaattca tgagcaaatg aaacttgcag
     3601 catctcaaaa caatgtagaa cttgactttt tccaaagtaa ttttgaaggt gaaatcgtag
     3661 ataaaattca agaatgtctt ggaacagttg atggaattat tatcaacgca gcaggctata
     3721 ctcatacttc agtagctatt cgcgatgcta ttgcagcagt agctttgcct acaattgaag
     3781 tacatattag caatgtttat cgcagagaag aatttcgtca aaaaagtctt atagcgcctg
     3841 tatgttctgg aactattgtt ggttttggtc cttttggcta tcacttggct ttaatgggta
     3901 taattcaaat ttgcgaacaa ataaaaaatt tgcgtgcgat gcaacaagca caacaaacga
     3961 ataaataata atgctaaaaa ttcaaggagt aaaacacttt gaaaaaagtc gtttttttcc
     4021 tttttttagt caaaatatac gatcttttaa atatttagct cttataggct taggaagcaa
     4081 tatagagccc gaaaaaaaaa gatttgatat gctttttcga gtaatgatgg atgataaaag
     4141 atttaaaatt ttatccacat ctcctatgtt gataaatgaa gcctttggtt ttaaagagca
     4201 aaaagatttt accaatgctg ttatgttgat acaaactaat ttgcatgcac gagcactttt
     4261 gaaagtttta ctttattatg aagtaaaatt taaacgcaag agaactttca aaaacgctcc
     4321 tagaacgctt gatttagatc ttttatactt ttcacaaaaa gtcaagcgtg ataagtggtg
     4381 tgaggtgcct cataaagggg ctaaagaaag agtgagtgta attttgcctt taggcatgat
     4441 ataaggaata taaatgggac aacttataca tacttttacc gttgaagata cagaacaaat
     4501 tatacccaaa gtaaaagaag attacggaga taaagcttta attataacaa ataaacaaat
     4561 tcgtcctaaa accttaaatc gcagtgcgct ttatgaggtt atggtagcca tagaagaaag
     4621 cgactatgaa gaacacttaa aaaaacaagg aaaatcttta cctgcaaaaa aaagctcgcc
     4681 aaaaccatcc tctacctctc ttgcagaaga aaaaattaga tctcaaatcc ctcaagaaga
     4741 tgaagatgta gtcttggatt tctcaaacac tcgcttaaat acaaatttaa acactgtaaa
     4801 aaacaatgac ttagctaaaa aaacctatca agattttcca caaaacaaaa tcaaccctca
     4861 tcaaaataag actctaggct ttgatgattt caaagaaaaa ctaagtgaag ttagcaatga
     4921 aatttctaaa gtcacaaaca cacctttaga aaattacacc cctaatccaa attataataa
     4981 aaaaatagaa aattttgaaa agcaatttga aaaacaaatc aacaagctta atgataaaat
     5041 agatcttctt gcagatatga tgtgggacga taaagctgaa gctagaaaaa atcttatgat
     5101 acctcctgaa tttgcaagta tttataaaca agccaaagaa agtggaatgc ttgaaaatca
     5161 tctagaagcg attatgaaag caactataga aaatatgcca gctgctatga aaaccaacaa
     5221 agatgcggtt caaagatatt ttcactcact tttaagaaat atcttgcctt gtcgtgttga
     5281 aagcgatata aaaaaacaaa aaatcatgat gctagtaggc ccaacaggag tcggaaaaac
     5341 aacaacctta gctaagttag cttttcgcta tgcttatgga gataagcgtt ataaaacagg
     5401 tattattacg cttgatactt atagaatcgg tgcagttgag caactttttc agtatgcaaa
     5461 aatgatgaaa cttcctatta ttgatagcat agaaccaaag gatttagatg aagcgataaa
     5521 aagcttaaat aattgcgaag taattttagt tgatactata ggaaattcac aatacgatca
     5581 aagcaaactt gctaaaacta aagaattttt aatgcactca aatgcagaaa ttgatgtaaa
     5641 tttagtggtt tctgcaaaca ccaaacatga agatttaatg gaaatttata aaaatttttc
     5701 attcttaaat attgatactt tgattattac taaatttgat gaaacaaagg tttttggaaa
     5761 tatcttctct cttgtttatg aaacaaatat tcctctaagc tttttctcta taggacaaga
     5821 agtgccagat gatttagaag tagccaatag tgattttcta gttcattgta ttttagaagg
     5881 gtttaacaaa ggaaaaaata atgaataacc aagcaaataa acttcgcaat ctcatgagtc
     5941 aaaatggaac caaaaaatcc caaaacactc attttatagc tattacaagt ggaaaaggtg
     6001 gcgttggaaa aagtacgatt agcgcgaatc tagccaatgt tttagcaaat aatggctata
     6061 aagttgggct ttttgatgct gatattggct tggcaaattt ggatgtcatt ttaaatgtac
     6121 gcatacaaaa aaatctcttg catgttttac gcggagaatg ctccttggaa gacattttaa
     6181 tagaagttaa gccaaattta tggctcatcc caggcgaaag tggagatgag attttaaaat
     6241 ataatgataa aaatatttac gagagatttt taaatcaagc aagtatttta gatgaacttg
     6301 attttcttat tatcgacaca ggcgcgggta ttggtggaaa tattttaaat tttttagaaa
     6361 tggctgatga agttatagta gtaactgttc ctgatcctgc agcaatcact gatgcgtatg
     6421 caaccataaa aacaacttct aagacaaaag aaaatttact aatgctcttt aatgttgtaa
     6481 aaaatgaaaa tgaagcttta aaagtttttg aaaatattaa aaaagttgca gatgcaaaca
     6541 ttaaaaatcc tttaaattta gaattcttag gtcatttaag cgcttctaaa gatgtaagtg
     6601 gtagtattaa aaaaagaact ttatttagcg atgaaaacac agcctcaagt gatgagatta
     6661 aagccctagc ttccaagctt ttatatagat tggaacggaa agtgcttgat aatgtttcaa
     6721 atcgtagttt ttcaagtttt tttagaaaaa ttattgaaag attttagcaa taaagagaag
     6781 agattatgag gccagaaaat tacgtagcat ttttcactgt ttgtggattt tttataggac
     6841 ttgcatttag cattattagt atagatgaag cctttgatat actgattttt acttgtttta
     6901 ttacttttat gttttatgtt tttgttcata ttgctattat gaattttata gatgtaaaga
     6961 aaattagtgg cagaatcttt aataaacacg attatgaaaa aactagcaat aatattatca
     7021 acgatttagt tattcgtgaa aagaaaatgg atataatttt agaaaagctc aatgaagaaa
     7081 gagaagagct aaagaaaaat gaattcaaag aaagacgaag aaatgctaaa agagccgcct
     7141 aaagcttatg cacaaatgct aaagaaagag caagatgagc ttgtgctttc ttacatgcca
     7201 gctctgcgtg ctatggcttt tagactaaaa gaacgcttgc cttcaagtat agatgttaat
     7261 gatcttatta gcataggcgt tgaagaaatg ataaagcttt cacgccgtta cgataaagaa
     7321 caaaatgata acttctgggg ttttgcaaga aaaagagtta atggctctat gcttgattat
     7381 cttagaagtc ttgatgtaat gagtcgaaat aatcgtaaaa ttattaaaga tattgatgca
     7441 atcatggatg aatatttttt agaacatgaa tgcgaacctg atgatgagta tctagccaaa
     7501 aaacttgatt tagatgtaga aaaaatcaaa gaagtaagaa cagctcatgc tattagctat
     7561 accctgccca ttgatgagca aatcgaactt tataatgaag acaatacttt agaaaaaatt
     7621 gaaaaagaag aacttttaga aaaaattcac gaagtgctag atgatcttaa agagcgcgat
     7681 cagttaatta ttcagcttta ttattatgaa gaattaagcc taaaagaaat cagtgaaatt
     7741 ttacaaatca gtgaaagcag aatttcacaa attcacaaaa aacttcttaa aaaacttaga
     7801 gaaaggctag tgtaatggct gagatactct cccaagaaga aattgatgct ctacttgaag
     7861 ttgtcgatga taacaccgac acacccatag cctcaaattc aaaagatgaa aaagatgaaa
     7921 gaaatatcgt tgtatatgat tttaagcgtc ccaacagagt ttcaaaagaa caacttagga
     7981 cgattaaagg catacatgat aaattagcaa gaaatttagc ctctcaaatt tcatcgatga
     8041 tgagaagtat tgttgaaact aaacttcatt cagtcgatca gatgacttat ggagagtttt
     8101 taatgtcttt gccaagccca acaagtttta atgttttttc tatcaaacct ttagatggaa
     8161 actgtgtttt agaaatcaat ccaagcatag cttttcctat gatagacagg cttttaggtg
     8221 gtcaaggcga tagctatgaa gcttcgcgtg agcttacgga tattgagctt aatttacttg
     8281 attctatttt gcgtatcatt atgcaaagac ttaaagaaag ctgggctacc gtaactgaaa
     8341 tttatcctag tatagaagct aaagaatcaa gtccaaatgt tgtgcaaatc gtatctcaaa
     8401 atgagattgt tatcatggta gtaatggaaa tcatcatagg aaattcaagc ggaatggtaa
     8461 atatctgcta tcctgtagta catttagaaa gtatattaag ccgtttagca aaccgtgata
     8521 ttatgatggg tgaaacctca gccaaaaaat cacgtaacaa agagcttaaa actttaatcg
     8581 gtcgtgctga agtggtatat gaggcaattt taggaaaaac cttaattaat gttcatgaat
     8641 ttttagaact taaacaaggc gatattttaa ggcttgatag agaagcagac gataaagcta
     8701 tagtaagtat cgataaaaaa gatgttttct tagcacaaat tggattgcat cgttttagaa
     8761 aatctattaa aattttagaa cttatacgca cagataaaga tgaaatcaaa gaaattttgg
     8821 aaaaatacga agaagagcgt aaagctaaag ccagtgttta tgatgagcct gaagaggagg
     8881 atgaagaaat atgatcaatg attttttaaa aatgtttaca aatgaatgca tcagcaccat
     8941 tgaaggttta acaggaaaaa gtgctgaatt tagcgaatat aaagaatttg atgtcaatac
     9001 aagcgatact ttaaaagcac ctttagtgta tgctatattt aatatagcaa atggtggaaa
     9061 aataggaatt ttagctggtg ctgttttaat gagtgctatt ggtgaatgga tgatgggtga
     9121 agaagagatc accaaaaacg ataaactggg tcctgatgaa atggatgcag ctaaagaagc
     9181 catccaaaat atcatttcag cattttctac aaccttagga gcccaaaaag acattccaaa
     9241 aatggatttt agcatagaat cttgtgaatt tgtgcctgaa agcgtagatt ttaaagattt
     9301 taaaaaatta tttttatatg atgtaaaaat aggcgattta gaagaacaag tttctttagc
     9361 catggatcaa acactccata acatcctaag cgggaaacct gctgaaacag gaaatacaag
     9421 cactgattct aatcacaata ctgaagaaaa agcgataatg cttagcgaag agcttaaaaa
     9481 tatcaatctt atcatggatg tgcgtttgcc tgttcgtgtg cgtataggca ataaaaaaat
     9541 gcttttaaaa gatgttttaa ctatggatat aggttcagtt gtggagctta atcaacttgc
     9601 aaacgatccg cttgaaattt taattgggga taaaagaatt gcttatggcg aggtagtaat
     9661 tgtcgatggt aacttcggcg ttcaaattac agaaattggt tctaaaaaag aaagattaga
     9721 acaactaaga taaaaagttt tagcctacaa attaagaata ataaatataa acgaattaaa
     9781 actaaaacaa actaaaaggg ctgaaatcaa aatgtaaaga ttttggagta tttaacttaa
     9841 aaggttttag ctctttttta ggagcaacaa ttaaagcata accaccttta ttatatctat
     9901 cccaaatact aaaaaattga cttttagaac ttatatattc tccatgactt ggatcaagca
     9961 cttgtaaata attaccttta tgattgataa ttataacaaa atgtggaaag cgtggatcat
    10021 cttcaatttt tacaagcatt ggaatattta caagtttatc caagttttct ctattgattt
    10081 gatatgaatt gctttcatag cctagttttt taactgcatc gcttaaatct gcaaagctta
    10141 ccatatccgt ataaagttcc tgtccactca taatctttaa aagttcaagt tcatcaaact
    10201 ttttatcatc aagtatattg agtaaagttg ccaaagatga agccccacaa gattgctcgt
    10261 aagtttgcct tattactctt tcgtttttaa tttcttgata ggatttaact acccattccg
    10321 cttttgcact caaagtaaga atgggtaaaa ataataaaat ttttagaatt ttttccataa
    10381 gcttatccca aatatgctat caggagaagc agagcttcct ccaaaactag cattaacaga
    10441 aactgcggta tctgaattaa tgctataagt agaacctaaa cttaaagttg gaatagaacg
    10501 cacttcagaa ttttgataac cattaatttt ttgctcggtt tgaaatcttt gctctgctcc
    10561 taaatctaaa gtaattttag gacttagaat aatagataaa tccccaccca cataaatact
    10621 atttccatac tctattttaa gggttttaaa ttttcttgat tggttataac caaagccggt
    10681 ataaatgcta tatacaacag gatcgctata tccccttaga ctagcttgta agctttgtga
    10741 ttttaggtaa aagtttttgg tttgattgac tgctttttct ctttgaacga ctgcagcttg
    10801 aaaggtaatt tgtggaatta aatctgcaat gctatcgcct gtataaataa aacctagtca
    10861 taaactatca aaacctattc tgtttttact agaatactca tttgtaaaaa agtttgtata
    10921 ttcttgtctt gcataacttc cgccccctga aataagtatg tcaaacttag gtgttatggt
    10981 ataaatgaaa gtttgagtta aaaacacttg ctttgtatca ttccaaattg taggatctcc
    11041 gcctattgtt atattaggat aaagagaata cgagtttgca tttcctgtgc taagtaaaga
    11101 aaagcttgta atacttctta aacctatttg ctttttaaac aaactgtcta tatttagttc
    11161 atcactagca aaaacacaac tgactaaaac cataaatgtt aaataaatct ttttcattgt
    11221 tacctttcta aatattttaa aaaatttttt taaagcaatg aatgttc
//
LOCUS       DARGEX010000053        11158 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.053, whole genome shotgun sequence.
ACCESSION   DARGEX010000053 DARGEX010000000
VERSION     DARGEX010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11158
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.053"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            178..1209
                     /gene="pseI"
                     /locus_tag="SF010_001105"
     CDS             178..1209
                     /gene="pseI"
                     /locus_tag="SF010_001105"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG8230040.1"
                     /translation="MQIGNFNTDEKVFIIAELSANHAGSLEMALKSIKAAKEAGADAI
                     KIQTYTPDSLTLDCDKDDFIIKGGLWDKRKFYELYESAKTPYEWHSQIFEAAQDAGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRMIAKENKPTIVSTGIANEEELF
                     KICEIFKEEKNPNLIFLKCTSAYPAQISDMNLKGIASLKEKFGVEVGLSDHSFGHLAP
                     VMAVALGARVIEKHFMLDKNIKSEDSEFSLDFDEFKAMVEAVREAESALGDGSLALDE
                     KGLKNRVFARSLYASKDIKKDEIFSEENVKSVRPSFGLHPKFYKELIGKTATKDIEFG
                     TALKQGDFQ"
     gene            1206..2174
                     /gene="legB"
                     /locus_tag="SF010_001106"
     CDS             1206..2174
                     /gene="legB"
                     /locus_tag="SF010_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG8230041.1"
                     /translation="MKTLVTGADGFIGSHLCESLVQKGYKVRALSQYNSFNFWGHLEK
                     SPYLKDMEVVSGDLRDSFFCEKITQGMDAIFHLGALIAIPYSYEAPQSYVDTNVKGTL
                     NMLEAAKKNEISHFIHTSTSEVYGTARYVPIDEKHPLQPQSPYSASKIAADMMALSYY
                     NAFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGTKELKLGNLSPTRDLNFVLDTC
                     EGFISLLKLNHFGEVYNIGSGTEYSMQEVLDLIQKILNQNVKIIQDEKRLRPKNSEVF
                     RLKCDSSKLQNATHWQSKISLEEGLKLSIEYFKENLASYKSEVYNV"
     gene            2167..3309
                     /locus_tag="SF010_001107"
     CDS             2167..3309
                     /locus_tag="SF010_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LegC family aminotransferase"
                     /protein_id="HEG8230042.1"
                     /translation="MFENEIAFIKKLFNKEKIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVARFEEALKQRTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGARAIFLDIDENTLSLGPKALQNFLENHSYQKDGFTYNKITHKRIKACVVMHT
                     FGLSADIEKLCEICKNYNIFLIEDAAEALGSTYKNKALGTFGKCGILSFNGNKIITGG
                     SGGAILCDDENLANLTKHLSTTAKIPHPYEYDHDIIGYNYRLCNINAAILLAGLEKLD
                     FFLENKRELAQIYKEFFTNHKACKFIDERKNSKSNFWLNALCFKDGNLRNTFLQECLE
                     NNIFVRPVWKSLPSLKPFQTWQKDELLNTQKLEKCLVNLPSSVRLN"
     gene            3527..4648
                     /locus_tag="SF010_001108"
     CDS             3527..4648
                     /locus_tag="SF010_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG8230043.1"
                     /translation="MLYCDHCVMPNTRPGIKFFKDEKGKNICSACINHKNKEKIDYKA
                     RFKELENLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHVMKEKLGMNPILFSVEDNFT
                     MTQAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGGDDKETPSAKAIFENGVASDLDINEFIDDEIKEENL
                     QLFFNPSADDLNKLDPIYLSYFIKWNSYSNYIFAKSRGFSDLQNEWDRSHCAENFDQI
                     DTIGYILHAWMKYPKFGHAMASDYASRFVRYGMMSREEAVKIVKEKDHKLDNKCIEDF
                     CNFTGISKTTFWKIVEKHYNLELFYKNEFNEFKLKNPLK"
     gene            4659..5338
                     /locus_tag="SF010_001109"
                     /pseudo
     CDS             4659..5338
                     /locus_tag="SF010_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            5380..6384
                     /gene="legI"
                     /locus_tag="SF010_001110"
     CDS             5380..6384
                     /gene="legI"
                     /locus_tag="SF010_001110"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG8230044.1"
                     /translation="MKKALIIAEAGVNHNGDLNLAKKLIEVAAKSGADFVKFQSFKAE
                     LCVSKNAKKAAYQLKTTAKDESQLEMIKKLELDFNAHQLLISHAKQCGIAFLSTAFDL
                     ESIELLDDLGLEVFKIPSGEITNLPYLKKIAKLNKKIILSTGMSNLGEIEAALEVLCK
                     EGTQRANITLLHCTTEYPAPFNEVNLKAMQTLKNAFNLDVGYSDHTKGIHISLAAIAL
                     GASVIEKHFTLDKNMSGPDHKASLEPDELQELCTKIREIESALGDGIKQASKSERKNI
                     EIARKSLVAKKKIKKGEIFSEENLTTKRPASGISAMRYDEYLGKKASKDYEEDELIHE
                     "
     gene            6377..7552
                     /gene="legG"
                     /locus_tag="SF010_001111"
     CDS             6377..7552
                     /gene="legG"
                     /locus_tag="SF010_001111"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8230045.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCLEIQNDKDLELQIIATGAHLS
                     PEFGLTYKEIEKEFKIAKKIPILLASDDKISLCKAMALANIGFSEAFESLKPDIVVIL
                     GDRYEMLSVASVCLMMNLPIAHLCGGELTLGAIDDSIRHSISKMAHLHFVSTQTYKNR
                     LLQLGEEKNRVFNVGSLASTIMKNINFLDKNELAKVLEFDLGQNIYLITYHPVTLNLK
                     NSKKEIDILLKTLDELNNASLIFTKANADENGLLINEILKDYCEKNPKKAKLFDNLGS
                     QKYLSIMKIAKAMIGNSSSGISESPFFKTPCINIGSRQKGRLRTQNIIDCEFENLDQA
                     FEKLESKDFKQALHHFKNPYENDKNPNIIIKTCLKNANLDTILQKNFIDLRQNLGYK"
     gene            7539..8570
                     /locus_tag="SF010_001112"
     CDS             7539..8570
                     /locus_tag="SF010_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8230046.1"
                     /translation="MDINKLKLTPDSSIEEALKVVGKERVRLGIIVDKKDKFLGVISD
                     SNIRKALIKGKNLQSKIKDIYTKNPITIKENTSKNELLKLSAKTDIYDFPVLNDKKEI
                     ISIKSISSLLNRQVNSNFVIIMAGGLGTRLKELTKDTPKPMLKVGKKPILESIVQKLK
                     EQNFENFIFCVNYKKQIIEDYFKKGKNFGVKISYIKERKKLGTAGALSLIKQDFKESF
                     IVMNADILTELNFNELLKAHKDSKALMSVCVREFEQQIPFGVIEQNKGFITNITEKPV
                     QKFLVSAGIYVCEPEMLELLNKNEYLDMPELIKLAMQKGRVNTYLIHDYWIDIGRLDE
                     FVKANEDFK"
     gene            8567..9472
                     /locus_tag="SF010_001113"
     CDS             8567..9472
                     /locus_tag="SF010_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8230047.1"
                     /translation="MKVLIIGFGSIGKKHFLALNELRFLVDVLSKSYEFSHFEGKNFR
                     LFKDLEELNLQDYDLFIIANITTSHFKTLEFLDQNVKEKIILVEKPLFQKDMEFIPSN
                     NNQIYIAYLLRFHPMIQDLKQLIDEKEVYFAKFICNSYLPNWRKLDYRQNYSAKKELG
                     GGVMLDLSHEIDLAFYFFKELSLKFSQNLKISELEITSDDFTFLALSAKNTSIHIELD
                     YFSKLTQRKILFHTKENSFEADLVHNKLNIYDKTNNFKSKTYENDTFKTLQNMYKAIL
                     EKDQNLCTLGEARRVLRLCDKARNE"
     gene            9465..10172
                     /gene="legF"
                     /locus_tag="SF010_001114"
                     /gene_synonym="ptmB"
     CDS             9465..10172
                     /gene="legF"
                     /locus_tag="SF010_001114"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG8230048.1"
                     /translation="MSEILCTICARGGSKGVKNKNIRKINDLEMIAYSIIQAKNSKLF
                     KHIVISTDSEEIAKIALKYGGEVFFKREAHLASDTAAKIPVMRDALLRSEEYFKCQFD
                     TLIDLDASAPLRSSADIIKAFETFCQNQNDNLITAVPARRNPYFNLIEVQDGKVVKSK
                     SGNFTTRQSVPKCYDMNASIYIFKRDFLLQNDSVFGKNTGLFIMDESTAFDVDSELDF
                     KIVEFLIKEKNLQAKDF"
     gene            10172..10942
                     /locus_tag="SF010_001115"
     CDS             10172..10942
                     /locus_tag="SF010_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8230049.1"
                     /translation="MLENKIIFVAGACGRIGKALCKKILQNKGIAILADINENHLSIL
                     KTELENEFKKELLSLRLDITSKESLNCAIDQAFEKYSKIDSFVNSSYPVGKDWGKIAY
                     YEASYEQICESLNLHLGGFILASQEFVKFFKKQSYGNIINLSSIMGVFAPKFENYENT
                     TMQSSLEYSVIKAGINHLGAWLAKELFNTNIRVNTLASGGILDNQANIFLEKYRKCCA
                     SKGMLDAEDICGTLVFLLSDESKFVTGQTLVVDDGWGL"
     gene            10942..>11158
                     /locus_tag="SF010_001116"
     CDS             10942..>11158
                     /locus_tag="SF010_001116"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HEG8230050.1"
                     /translation="MNNELFLKNTQALFEVDQPLAYALRILKNIENYNIDKNSDGLNI
                     INKQMQKIYENPNQELLDQLVYFQTHYK"
BASE COUNT         4247 a         1563 c         1933 g         3415 t
ORIGIN      
        1 aaaatcttaa aattaaaaat ttttcgagaa aacttgcagg ttatcaattt gcacaaaaat
       61 ttggttttgg cgttaccaaa gaaacaatca aacatgataa aaaaattttt atcatgcaat
      121 tagttttttt aaaaaaagtc gatataatgc aaaataagaa ccataaaagg caaaatcatg
      181 caaataggaa attttaatac cgatgaaaaa gtttttatca tagcagagct gtccgcaaat
      241 cacgcaggaa gtcttgaaat ggcacttaaa agcataaaag cagctaaaga agcaggagca
      301 gatgcgataa aaattcaaac ctacactcca gatagtctca cgctagattg cgataaagat
      361 gattttatca tcaaaggggg actttgggat aagcgcaaat tttatgagct ttatgaaagc
      421 gctaaaactc cttatgagtg gcattctcaa atttttgaag ccgcacagga tgcgggtata
      481 ctttgttttt caagtccttt tgcgaaagag gatgtagagt ttttaaaacg ctttgatccc
      541 atcgcctata aaatcgcctc ttttgaagca aatgatgaaa atttcgtgcg tatgatcgcc
      601 aaagaaaaca agcctaccat cgtttcaact ggtattgcaa acgaagaaga gctttttaaa
      661 atatgtgaaa ttttcaaaga ggaaaaaaat cctaatctga tctttttaaa atgcacttca
      721 gcttacccag cacaaatttc tgatatgaat ttaaaaggta ttgcaagttt aaaagaaaaa
      781 tttggcgttg aagtaggact tagtgatcat agctttggac acttagctcc tgttatggct
      841 gttgcgcttg gggctagagt gatagaaaaa cattttatgc ttgataaaaa tataaaaagc
      901 gaagatagtg aatttagtct tgattttgat gaatttaaag ccatggtgga agcagtaaga
      961 gaggctgaaa gtgctttggg tgatggctcc ttagccttag atgaaaaagg tcttaaaaac
     1021 cgcgtttttg ctagaagttt atatgcaagc aaagacatca aaaaagatga aatttttagc
     1081 gaagaaaatg taaaatcagt gcgtccttct tttggtcttc atcctaaatt ttacaaagaa
     1141 cttataggaa aaactgctac taaagatata gaatttggca cagctttaaa acaaggagat
     1201 tttcaatgaa aaccctagta acaggtgcag atggttttat aggctctcat ctttgtgaga
     1261 gtttggttca aaaaggctat aaagtaagag ctttaagtca atataattct tttaactttt
     1321 ggggacattt ggaaaaaagt ccttatttaa aggatatgga agttgtaagt ggggatttaa
     1381 gagatagctt tttttgtgaa aaaatcaccc aaggaatgga cgctattttt catcttggag
     1441 ctttaattgc cattccttat tcttacgagg caccgcaaag ttatgtagat actaatgtaa
     1501 aaggtacttt aaatatgcta gaagctgcga agaaaaatga aatttctcat tttatacaca
     1561 cttctacaag cgaagtttat ggcactgcaa gatatgtgcc tattgatgaa aagcaccctt
     1621 tgcaacctca aagcccctat tctgctagta aaatcgcagc ggatatgatg gcgcttagtt
     1681 attataatgc ttttaattta aatgtaaata ttgctcgccc tttcaatacc tatggaccaa
     1741 gacaaagcgc aagagccatt atacccacta tcataacaca aattttaagt gggacaaaag
     1801 aattaaaact tgggaattta agtccgacaa gggatttaaa ctttgtcctt gatacttgcg
     1861 aaggctttat ctcgcttttg aaattaaatc attttggaga agtgtataac ataggctctg
     1921 ggactgaata ctcgatgcaa gaagtgcttg atcttataca aaaaattcta aatcaaaatg
     1981 taaaaatcat ccaagatgaa aaaagattgc gcccaaaaaa tagtgaggtt tttagactaa
     2041 aatgcgattc aagcaaactt caaaatgcaa cccattggca aagcaaaata agtcttgaag
     2101 aaggcttgaa actaagcata gaatatttta aagaaaattt agcaagttat aaaagtgaag
     2161 tttacaatgt ttgaaaatga aattgctttt attaaaaaac ttttcaataa agaaaaaatc
     2221 gccttgcacg aaccttgctt tatcggaaat gaaaaaaaat atctcttaga atgcattgat
     2281 agcggttttg tttcaagcgt aggtgagttt gtagcgcgtt ttgaagaagc tttaaaacaa
     2341 agaacaaaag ctcgatttgt tatcgctaca aatacaggca ccgccgcact tcatatcgct
     2401 ttacttgcaa atggtattga tgaaaattgt gaggtgatta cccaaagtat tagctttgtt
     2461 gcaacggcaa atgctattgc ttacacagga gctagggcta tttttttaga tattgatgaa
     2521 aatactttaa gtttaggccc taaagcttta caaaattttt tagaaaatca cagctatcaa
     2581 aaagatggct ttacttacaa taaaatcaca cataagcgca tcaaagcttg tgttgtaatg
     2641 cacacttttg gccttagtgc tgacatagaa aagctttgcg aaatttgtaa aaattataat
     2701 atttttttaa tcgaagatgc cgccgaagct ttaggaagca cttataaaaa caaagcttta
     2761 ggtacttttg gaaaatgtgg aattttaagt tttaatggaa acaaaatcat cacaggtgga
     2821 agtggcggag cgattttatg cgatgatgaa aatttggcaa atcttacaaa gcatttaagt
     2881 actactgcta aaatacctca tccttatgaa tacgatcatg atatcatagg ctataattat
     2941 agactgtgca atataaatgc cgcaatttta cttgcgggac ttgaaaagct agatttcttc
     3001 ctagaaaaca aaagagaatt ggcacaaatt tataaggaat tttttacaaa tcataaagct
     3061 tgtaaattta tagatgaaag aaaaaattca aaaagcaatt tttggctcaa cgctttatgt
     3121 tttaaagatg gaaatttaag aaatacattt ttacaagaat gtttagaaaa caatattttt
     3181 gtgcgtcctg tatggaaaag cttacctagc cttaaacctt ttcaaacttg gcaaaaagat
     3241 gagcttttaa atactcaaaa attagaaaaa tgtttggtaa atttacctag cagtgtaaga
     3301 ttaaactagg aataatatat accaatattt tataagatat aaaaatattg tatatgtaaa
     3361 caaaaatttt tatcaataaa aagctttaaa aacagtattt taaacaggaa aataaaacac
     3421 atatcttata tattacaaat ataaaataag aatatattaa attaatgttc gatatactct
     3481 aaacattttt taaaaaaaat aataaataat taagggggaa accaaattgc tttactgtga
     3541 tcattgtgtc atgccaaata caaggcctgg tataaaattt ttcaaagatg aaaaaggtaa
     3601 aaacatctgt tctgcttgta tcaatcataa aaacaaagaa aaaattgact ataaagcaag
     3661 atttaaagag cttgaaaatc tatgtgataa ataccgcaga atgaatggta aattcgaata
     3721 cgattgtgct atagctgtaa gcggaggcaa ggattcacat tttcaagtgc atgtcatgaa
     3781 agaaaaactt ggaatgaatc ctattctttt tagcgttgaa gataatttta ccatgacaca
     3841 agcaggcaag aaaaatctta aaaatttaag cgaaactttt ggttgtcata tcattagctt
     3901 aaaacctgat atcaaaactc aaaaaaaagt tatgctaaaa acctttgaaa aatatggaaa
     3961 acctacttgg tttattgata gactgattta cagctatcct tttgctatgg ctttaaaatt
     4021 taatacacct ttattggttt atggggaaaa tgtaagttat gagtatgggg ggggggacga
     4081 caaagaaacg cctagtgcaa aagcgatctt tgaaaatggg gttgcaagcg atttagatat
     4141 aaatgaattt attgatgatg aaataaaaga ggaaaatctt caacttttct ttaatccaag
     4201 cgctgatgat cttaataaac ttgatccgat ttatcttagt tattttataa aatggaattc
     4261 ttactcaaat tatatctttg ctaaaagtcg tggatttagt gatttgcaaa atgagtggga
     4321 tagaagtcat tgtgctgaaa attttgacca aattgatacc ataggataca tactgcacgc
     4381 ttggatgaaa tatccaaaat ttggtcatgc aatggcaagt gattacgcat ctcgttttgt
     4441 gcgttatgga atgatgagta gagaagaagc tgtaaaaatc gtgaaagaaa aagatcataa
     4501 actagacaat aaatgtattg aagatttttg taattttaca ggcattagca agactacttt
     4561 ttggaaaatt gttgaaaagc attacaatct tgaacttttt tacaaaaatg aattcaatga
     4621 atttaaactt aaaaatccat taaaataaag gaaataaaat gcaaaattca cttcaaacct
     4681 atactcaaaa atatgatgaa aacaattatg gacttttata tcctgattct catgtaatac
     4741 gattttatga aagaatttta aaatacaaac ttggcattac aagcggaaat ttacttgatt
     4801 ttggttgtgg caatggggtt cattctaagt attttttaga taagggcttt aaaccttttg
     4861 gcatagatat tgtgccaagt ttgcaaaaaa attgggatgc aaaaatcaaa atttcagggg
     4921 gggggattgt aaaatcatag agccaaattc tagtatcaaa gggctttttg atgaaaaaat
     4981 ggatattgtc tttgcaaatc aaagccttta ttatatccct aaaacagaac ttaaacaaaa
     5041 tatcttagaa ttttatgaat gcttaaatca aggtggaata ctttttgcta caatgatgag
     5101 tgagaaaaat tactatttct ctcatagcga aaaagaaaat gaaaatggat tgcgtaaggt
     5161 tagtatacag ggtcgcttaa acgaaacaac ctacattcat tttgctaaaa gtattgatga
     5221 gttgcaagaa ctttttaagc cttttgaagc cttatttttg ggtgattatg atcctattaa
     5281 tttttataat tttgaaggct cggctcatca ttttatttac attggtataa aaagataaaa
     5341 attttttgcc tttattgaag gcaaaataaa ggtaaaaaaa tgaaaaaagc tttaatcata
     5401 gcagaagcag gggttaatca caatggtgat ttaaatttgg ccaaaaagct gatcgaagtt
     5461 gctgccaaaa gtggagctga ttttgttaaa tttcaaagtt tcaaagccga actttgcgtg
     5521 agtaaaaatg ctaaaaaagc agcttatcag ctaaaaacca cagctaaaga tgaaagtcaa
     5581 ttagaaatga ttaaaaaact agagcttgac tttaatgcac accagctttt aatctctcat
     5641 gctaaacaat gtggtatcgc ttttctttca acggcttttg atttagaaag tattgaactt
     5701 ttagatgatt taggacttga agtttttaaa attccaagcg gagaaatcac aaatttgccc
     5761 tatctaaaaa aaattgcaaa attaaataaa aaaatcatac tctccacagg aatgtcaaat
     5821 ttgggcgaga tagaagcggc tttagaagta ctttgcaaag aaggcaccca aagagcaaat
     5881 atcaccctac ttcactgcac taccgaatac cccgcaccct ttaatgaggt taatttaaaa
     5941 gctatgcaaa ccttaaaaaa tgcttttaat cttgatgtag gctattcaga tcacaccaaa
     6001 ggtatacata tttctttggc cgctatcgcc ttaggggcaa gcgtgataga aaagcatttt
     6061 accttagata aaaatatgtc aggacctgat cataaagcct ctttagaacc tgatgagctt
     6121 caagaacttt gcacaaaaat tagagaaatc gaaagtgctt taggtgatgg cataaaacaa
     6181 gcaagcaaaa gcgaaagaaa aaatatcgaa attgcaagaa aaagcctagt agctaaaaag
     6241 aaaatcaaaa aaggagaaat ttttagcgaa gaaaacctta ccacaaaacg ccctgctagt
     6301 ggtataagtg cgatgcgtta tgatgagtat ttgggcaaaa aagccagtaa agattatgaa
     6361 gaagatgagc taatccatga gtaaaagaaa aatttgcata gtcagcgcaa caagggctga
     6421 gtggtatctt ttaagaaatt tatgccttga aatacaaaat gataaggact tagagctcca
     6481 aattatcgct acaggagcgc acttaagccc cgaatttgga ctaacttata aagaaataga
     6541 aaaagaattt aaaatcgcta aaaaaattcc tattttactc gcaagcgatg ataaaataag
     6601 cctttgcaaa gctatggctt tagcaaatat tggctttagc gaagcatttg aaagcttaaa
     6661 acctgatatc gtagtaattt taggcgatcg ttatgaaatg ttaagcgtgg ctagtgtatg
     6721 cttgatgatg aatcttccca tagcccatct ttgcggcgga gagcttacct taggagccat
     6781 tgatgatagc ataagacata gcatttctaa aatggcacat ttgcattttg taagcactca
     6841 aacttataaa aatcgtcttt tgcaacttgg agaagaaaaa aatcgtgtat ttaatgtcgg
     6901 atctttggca agtactatta tgaaaaatat caattttttg gataaaaatg agcttgcaaa
     6961 agtcttagaa tttgacttag gacaaaatat ttatttaatt acctatcatc ctgtaacttt
     7021 aaatttaaaa aattctaaaa aggaaatcga tattttatta aaaactttag acgagcttaa
     7081 taatgcaagt ttgattttta ccaaagcaaa tgcagatgaa aatgggcttt tgatcaatga
     7141 aattttaaaa gactactgcg aaaaaaatcc taaaaaagct aaactttttg acaatcttgg
     7201 ctcacaaaaa tatcttagca ttatgaaaat agctaaagcc atgataggaa atagctcaag
     7261 cggtataagc gaaagtcctt tctttaaaac cccttgtatc aatataggat caagacaaaa
     7321 agggcgttta agaactcaaa atatcattga ttgtgaattt gaaaatttag atcaagcttt
     7381 tgaaaagcta gaaagcaaag attttaaaca agctttacat cattttaaaa acccttacga
     7441 aaatgacaaa aatccaaata taatcataaa aacttgccta aaaaacgcga atttggatac
     7501 aattttacaa aaaaatttca ttgatttaag gcaaaacctt ggatataaat aaactcaaac
     7561 tcacacctga ttctagcatt gaagaagcct taaaagtagt aggaaaagaa cgcgttcgcc
     7621 ttggaatcat tgtcgataaa aaggataaat tcttaggtgt catcagtgat tcaaatatca
     7681 gaaaagcttt gataaagggt aaaaatttac aaagcaaaat caaagatatc tatactaaaa
     7741 atcctattac catcaaagaa aatacaagca agaatgaact tttaaaacta agtgcaaaga
     7801 ctgatattta tgattttcct gtgctaaatg acaaaaaaga aatcatttct ataaaatcca
     7861 tttcttcctt gttaaaccgc caagtaaatt caaattttgt catcataatg gcaggtggac
     7921 ttggaacccg tttaaaagaa ttgaccaaag atactccaaa acctatgcta aaggttggaa
     7981 aaaagcctat tttagaaagt atagtgcaaa aattaaaaga gcaaaatttt gaaaatttta
     8041 tcttttgtgt aaattataaa aaacaaatta tcgaggatta ttttaaaaaa ggtaaaaatt
     8101 ttggtgtaaa aatttcttat atcaaagagc gcaaaaaact aggtacagca ggggctttaa
     8161 gtcttatcaa gcaagatttt aaagaaagct ttatcgtaat gaatgcagat attttaaccg
     8221 agctcaattt taacgagctt ttaaaagcac ataaagattc taaagcttta atgagtgtgt
     8281 gtgtaagaga atttgagcag caaattcctt ttggggtgat agaacaaaat aaaggcttta
     8341 tcacaaatat cacagaaaag ccggtgcaaa aatttttagt aagtgcagga atttatgtat
     8401 gcgagcctga aatgttagaa cttttaaata aaaacgaata ccttgatatg ccagagctta
     8461 ttaaactagc gatgcaaaaa ggtagagtaa atacttattt aatccatgat tattggatcg
     8521 atataggaag acttgatgag tttgtcaagg caaatgagga ttttaaatga aagttttaat
     8581 cataggcttt gggagcatag gaaaaaaaca ttttttagcc ttaaatgaac tgagattttt
     8641 agtagatgtg ctttcaaaaa gctatgaatt ttcgcatttt gaaggtaaaa actttagact
     8701 ttttaaggat ttagaagaat taaatttaca agattatgac ttatttatca tcgcaaatat
     8761 cactacaagt cattttaaaa ctcttgaatt tttagatcaa aatgtaaaag aaaaaatcat
     8821 acttgtggaa aaacctttat ttcaaaagga tatggagttt attcctagca acaataatca
     8881 aatttatatt gcttatcttt taagatttca tcctatgatt caagatttaa aacaactcat
     8941 cgatgaaaaa gaagtttatt ttgctaaatt tatttgcaat tcttatttgc ctaattggcg
     9001 aaaacttgat tataggcaaa attatagcgc caaaaaagag ctaggtggtg gggtaatgct
     9061 tgatttatcc catgagattg atttggcttt ttattttttt aaagaacttt ctttaaaatt
     9121 ttctcaaaat ttaaaaattt cagagcttga aataacaagt gatgatttta cttttttggc
     9181 attgagtgcg aaaaatactt caattcatat cgagcttgat tatttttcaa aattaactca
     9241 aagaaaaatt ctttttcaca ccaaagaaaa tagctttgaa gccgatttag ttcataataa
     9301 attaaatatt tatgacaaaa ctaacaattt taaaagtaaa acttatgaaa atgatacttt
     9361 taaaacctta caaaatatgt ataaagcgat cctagaaaaa gatcaaaatt tatgtacttt
     9421 aggagaagca aggagggttt taagattgtg tgataaggca agaaatgagt gaaattttat
     9481 gcacaatttg tgcaagaggt ggaagcaaag gtgttaaaaa taaaaatata cgcaagatta
     9541 acgatcttga gatgatagct tatagcatta tccaagctaa aaattcaaaa ctttttaaac
     9601 atatcgttat aagcacagat agtgaggaaa tagccaaaat agcgctaaaa tatggcggcg
     9661 aagttttttt caaaagagaa gctcatctag caagcgatac agctgctaaa attcctgtaa
     9721 tgcgtgatgc tttgttaaga agtgaagagt attttaaatg ccaatttgac accttaatcg
     9781 atcttgacgc ttcagcgccg cttagatcta gtgctgatat cataaaagct tttgaaacat
     9841 tttgtcaaaa tcaaaatgat aatctaatca ccgctgttcc tgctagacgc aatccttatt
     9901 ttaatctaat cgaagtgcaa gatggaaaag ttgtaaaatc caaatcagga aattttacca
     9961 cacgccaaag cgtacctaaa tgttatgata tgaatgcaag tatttatata tttaaaagag
    10021 attttttact gcaaaatgat agcgtttttg gtaaaaatac agggcttttt atcatggatg
    10081 aaagcactgc ttttgatgta gatagcgagc ttgattttaa aatagtagaa tttttgatca
    10141 aagaaaaaaa cttacaagca aaggattttt aatgctagaa aataaaatta tatttgtagc
    10201 aggagcttgt ggacgcatag gcaaggcgct ttgtaaaaag atattgcaaa acaaaggcat
    10261 agccatttta gccgatatca atgaaaatca tttatctata ttaaaaacag aactcgaaaa
    10321 tgagtttaaa aaagagcttt taagtcttag gcttgatatt acttctaaag aaagcttaaa
    10381 ttgtgccatc gatcaagctt ttgaaaaata ctctaaaatc gatagctttg taaattctag
    10441 ctatcctgta ggaaaagatt ggggcaagat agcttattat gaggcttcat atgagcaaat
    10501 ttgcgaaagt ttaaatttgc atttgggtgg atttatctta gcttcgcaag aatttgtgaa
    10561 attttttaaa aaacaaagtt atggcaatat catcaatctt agctctatta tgggggtttt
    10621 tgcgcctaaa tttgaaaatt atgaaaatac caccatgcaa agttctttgg aatacagcgt
    10681 gatcaaagca ggaattaatc atcttggtgc ttggctcgca aaagagcttt ttaatacaaa
    10741 cattcgtgta aataccttag caagtggtgg aattttagat aatcaagcta atattttttt
    10801 agaaaaatac cgcaaatgct gcgcaagtaa gggcatgtta gatgcagaag atatttgcgg
    10861 aaccttggta tttttactca gtgatgagag caaatttgtc acaggacaaa ccttagttgt
    10921 agatgacgga tgggggctct aatgaataat gaactttttt taaaaaatac ccaagcgctt
    10981 tttgaagtag accaaccttt agcatatgcg ttaagaattt taaaaaatat cgaaaattat
    11041 aatatagata aaaatagtga tggtttaaat ataatcaata agcaaatgca aaaaatatat
    11101 gaaaatccca atcaagaact tttagatcaa cttgtctatt ttcaaactca ctataaaa
//
LOCUS       DARGEX010000054        11015 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.054, whole genome shotgun sequence.
ACCESSION   DARGEX010000054 DARGEX010000000
VERSION     DARGEX010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11015
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.054"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..305)
                     /locus_tag="SF010_001117"
     CDS             complement(<1..305)
                     /locus_tag="SF010_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG8230051.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYH"
     gene            complement(401..859)
                     /locus_tag="SF010_001118"
     CDS             complement(401..859)
                     /locus_tag="SF010_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230052.1"
                     /translation="MIRNFFIGMSFLGILFLAFYTLYDKKKESIFSLNTCQPLTCDLN
                     LQDCVFSFNKKNIEVSAYPKPIKIFNKTTIKIKNFPHYSNLKIKIYSLNSYIGDIIPK
                     FNIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDVTMQKISNR"
     gene            1016..1993
                     /locus_tag="SF010_001119"
     CDS             1016..1993
                     /locus_tag="SF010_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG8230053.1"
                     /translation="MLKRLALLIALSSLVLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1994..2980
                     /locus_tag="SF010_001120"
     CDS             1994..2980
                     /locus_tag="SF010_001120"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG8230054.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2983..3450
                     /locus_tag="SF010_001121"
     CDS             2983..3450
                     /locus_tag="SF010_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG8230055.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            3554..5020
                     /locus_tag="SF010_001122"
     CDS             3554..5020
                     /locus_tag="SF010_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG8230056.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(5048..5776)
                     /locus_tag="SF010_001123"
     CDS             complement(5048..5776)
                     /locus_tag="SF010_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8230057.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(5769..6512)
                     /locus_tag="SF010_001124"
     CDS             complement(5769..6512)
                     /locus_tag="SF010_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8230058.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            6595..6774
                     /locus_tag="SF010_001125"
     CDS             6595..6774
                     /locus_tag="SF010_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230059.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            6767..7336
                     /locus_tag="SF010_001126"
     CDS             6767..7336
                     /locus_tag="SF010_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG8230060.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(7366..7731)
                     /locus_tag="SF010_001127"
     CDS             complement(7366..7731)
                     /locus_tag="SF010_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG8230061.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            7854..8846
                     /gene="pheS"
                     /locus_tag="SF010_001128"
     CDS             7854..8846
                     /gene="pheS"
                     /locus_tag="SF010_001128"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG8230062.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            8843..>11015
                     /locus_tag="SF010_001129"
     CDS             8843..>11015
                     /locus_tag="SF010_001129"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8230063.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDI"
BASE COUNT         3855 a         1352 c         1880 g         3928 t
ORIGIN      
        1 atatggtaac ctccagattt aagctctgtg cttgaatgag cttttataat aatttcagga
       61 attttttgca tcatcatttt tccatcttta tgtatatgtg tatgcagttc actgacttca
      121 ctgatatcgc ttttggcact tattagagca atatccttat cagtattatt aaaaatagta
      181 agaaaaatag cactattttg cgcatgaggt ggagtttgtt ttacaaaggc attttttacc
      241 tctatatcat taacagccca aagatttaca gcaaaaagag cacctaagag aagaattttt
      301 ttcatattgt atccttattt ttataatatt aaatatttgt tcattatatc aaaaaatatt
      361 tttatttgaa tataaaattt tgaaaatttt tcaatgtgtg ttacctgttt gaaatttttt
      421 gcatagtaac atcaaaatca aagaaaaaac cagttggagc attattgttt aaaaattcaa
      481 ccctaaatct agaatcatcg gtaatgcttc tacctataaa atttataaga atatcaccat
      541 taactatatt aaatttagga atgatatcgc ctatatagga atttaaacta taaattttaa
      601 tctttaaatt agaataatga ggaaaattct taatttttat agtagtttta ttgaaaattt
      661 ttataggttt tgggtaggct gaaacttcaa tatttttttt attaaaagaa aaaacacaat
      721 cttgtaaatt taagtcacaa gttagaggtt ggcatgtatt taagctaaat atactttctt
      781 tctttttatc atataatgta taaaaagcta aaaacaaaat gcctaaaaaa gacattccta
      841 taaaaaaatt tcttatcatt atagacaacc ttttaaaaca agcctttatg atttgtaaaa
      901 attatatcat aaataaggct gcattgttaa tataattaat attttttaag aaaaaaaata
      961 ttataatcac aaacattttt gacttaaaaa aatttgaaat acctaaggaa aaacattgtt
     1021 aaaacgactt gctttattaa ttgcactttc ttcattggtg ttgcatgcct cagatcttgt
     1081 taaaatttat cttaatcaag gattagatgc tgttggtgta gcgattgaaa aagaattaac
     1141 tcaaaaggat ttttggttaa gtgaaatagg agataaaaat atttcacttg gatactatga
     1201 tgataatgtt gctatcgtgc ttacaaataa aacagataaa attctccgtg tttattctta
     1261 cgaggacgga aaaataagaa aagattttga acaaaaagaa ataataactg gattaatggg
     1321 tgataaaaaa atagaaggag atttgaaaac gccagtaggt ttttatgagt taggccgtaa
     1381 gtttaatcca ggtgatcctt attatggtcc ctttgctttt gccacaactt atccaaattt
     1441 acttgataaa gtacaaggaa aaacaggtgg tggtatttgg atccatggct atcctttaga
     1501 tggttctaga cttgatgaat ttaaaacaag agggtgtatt gctttattta ataataattt
     1561 ggagaaattt gcaaaagttg tgcaagataa aaaagttttt gttatgacag aagaaaaaga
     1621 aaaaattaga gctaaaaagg atcaaatcgc tagtttattg gctgatcttt ttacatggaa
     1681 actagcttgg acaaatagtg acactaatgc ctatttaagt ttttatgatg agcaagaatt
     1741 taaacgtttt gataaaatga aatttgaaca gtttgcttcc atgaaaaaat ctattttttc
     1801 tcgtaaagaa gataaaaaga ttaaattttc agatattaat atcagccctt atccgaattt
     1861 agaaaatgaa actatgtata gaatttcatt ttatgaggat tattacacta aaaactatca
     1921 gtttagaggc gataaaattt tatacgttaa gatagatagt aaaggtaaaa tgaaaatttt
     1981 agcagagcaa taaatgtctt taataaaaat tgatcaaaaa gcttatgaat acaatttaag
     2041 acatattgct aaaaaaatag ggagttttca aagattaatt tgtgttttta aagataatgc
     2101 atatggacat ggagctaagc ttttagctcc attagccaaa aatttaggag tttcttttgt
     2161 tgctgttaag agtgaagaag aagctcgaga aatcgaagaa ttttttgaga atatattaat
     2221 actatcacat cgtcctcatg gtaatgaaaa ttctcgattt atttatgctt taaatgacat
     2281 ttctcaagta aaaaattaca agcaagatat aaaaatacat ctaaaaatag atacaggcat
     2341 gcatcgcaat ggaatttgtg tagaaaattt agagcatgct ataaatctta ttcaaggtag
     2401 tgatttaaaa cttactggaa tgtttacaca ttttgctagt gcagatgaaa tggatggaag
     2461 tttttttgtt caaaaagaaa attttcaaaa agctaaaaag atagtaaaaa aatatttttc
     2521 aaatttatta tttcattcgc ataattctgc agcattattt agagggaaaa ttcccgaaga
     2581 tgaatattgt agagttgggc ttgttcaatt tggatatggg gattcaaatt taaaaagagt
     2641 tttaagcttg tatgctcata gattaagtca aaggatttta caaaaaggac agagtatagg
     2701 atatggaggc atttttactg ctgcaaagga tatggaagta gcaacttatg atttgggtta
     2761 tgctgatggt cttttccgat acaatggaaa aggggagtta gtgcttggaa atggaaaagt
     2821 aatgcttgga aagatgtcaa tggatagttt ttcttgtgaa aattctggtg aggaaatttg
     2881 cgtgtttaaa gatgctgata tttgggctga tttttttcat actattaact atgaaatttt
     2941 agtaaaatta aatcctaata ttcaaagagt tctagtataa atatgtttaa tatagtttta
     3001 gtccacccta gaataccgca aaatacaggt agtataggta gaatgtgctt taatgctggt
     3061 tttaaacttc atattgttaa accaactgtt tttgatattt cacaaaaggc tgttagaagg
     3121 gcaggacttg attactggga taaattagag cctattattt gggagaatct tgaagaattt
     3181 ttgaatgaaa atatgattta taaaaatcgc ttttttttcg caacaactaa gagtcaaaaa
     3241 gcttattttg atgcagaatt tcaaaaaaat gatttcttat tctttggaag tgagagttat
     3301 ggtttgccta tggaattaat gcaattaaat tgggaaaatg ctataactat acctatgaaa
     3361 tcttatggaa gaagtttaaa tttagccaca agcgttggta taatctctta tgaagcttta
     3421 agacaaaatt ttagaaattt tgcttcttaa aagtttcaaa tttacacaat agcttaaaac
     3481 aaataaaatc ataaagtcct ttttataaaa attatgttaa agtaaaattc agattatttt
     3541 ttgaggagtt tggatgaaat tagatattat gctagatttt gccaataaag cgtctgatat
     3601 tatagctaat aagattgtcc caaatacaga cattattatg gtagttttac ttattgtttg
     3661 tgggctttat tatagttttt taactcgctt tgttcagttt cgtatgttga gttctgtatt
     3721 taaaattctt acagaaaaaa acgaaggaca cgctaaagaa catatttcac cttttcaagc
     3781 attaatgatc tcaactgctt ctagagttgg tataggaaat attgctggaa tttctttggc
     3841 attggctaca ggtggagctg gtgctttatt ttggatgtgg gttatggcat tttttggtgg
     3901 tgcctcagca tttgctgaaa gtaccttagc tcaagtttac aaatcaaaag atgatacagg
     3961 cgggtttaaa ggtggtccag cttattatat aaaaaaagcc ttaggctcac atttttttgg
     4021 agcttttttt gcttttattc ttattattac ttatgcttat ggatttaatg gacttcaaag
     4081 tcaaacaatg acttcgtctt ttaaagttta ttatgatatg tttaatccaa atgctgctgt
     4141 agattttgca tcaagttctt ggccaatgat tattggtatt gttttaacta tttttggtgc
     4201 atggatgttt ttttctcacc atactaaaat aggtaaaatt agttctttaa ttgttccttt
     4261 tatggcttta gcttatgttt tacttgccgt gattgctgtt ttaatgaatt ttgataaaat
     4321 tccttctgtg attcatatga ttttacaaag tgcttttgat tttaaagcga tttttggtgg
     4381 ttttgctggt tctgctttgg ttatagggat taaaagagga cttttttcaa acgaagcggg
     4441 tatgggctcg gcacctaatg cagctgcagc agctttgaca agtcatccag ctaaacaagg
     4501 tgttatacaa gccttttcag ttttaattga tgttgttgtt tgtacaagtt ctggattttt
     4561 agttcttttt tctatggcat atttaggact tggagaaagt aaaattgacg gtggaatgcc
     4621 tttagttcaa gaagctatgc gtgagtatta cggtagcttt ggaatccatt ttattactat
     4681 agctattgtt ctttttgcaa taacttcttt aataggaaat tattattatg ctcaagctaa
     4741 tgttaaatat ttaacaaatt ccaaatttgt aatgaatttg tttagaatta cagctgtggc
     4801 tatgattttt ataggctcgc aaatgaattt aaaacttgct tggaatttgg ctgatttgac
     4861 tatggctttc atggcaacga caaatattat atctttattg cttttaggtg gtatagtaaa
     4921 taaagtttta aaagatttta atatgcaaca aaaatctggt atagatccta aatttaatgc
     4981 tagcaaactt ggaattaaaa acgctgaatg ttgggattaa aattcataag ccttagtggc
     5041 ttatgaatta atgatttaaa accttgttta aaaattctct caatctttca ttgctaggat
     5101 tttcaaatac ttctttaggg cttgcatcaa cagcaatttt tcctttatcc ataaaaaata
     5161 tacgattggc aacatttcta gcaaagccca tttcatgagt tactacaagc atagttaaac
     5221 cttcttttgc aacatctttc ataatgctta gaacctcgcc tatcatttca ggatctagag
     5281 ctgaagtagg ttcatcaaat aaaataacat caggattcat catcaagctt ctagcaatag
     5341 ctatgcgttg tttttgtccg ccagagagct tatggggcat tatattttct ttgtctgcta
     5401 aacccacctt agcaagaagt aattttgctt tttttatggc ttcttcttga cttaaaattc
     5461 ctgttttaat gggcgttaaa cataaatttt ccataacatt tttattggca aaaagattaa
     5521 aatgctgaaa taccatgcta actttttgcc tgatcttatt aatatcaatt tctttatcaa
     5581 gtatgttttg cttattgatt aaaatttccc cactatcagc tagttctaag cgattgatgc
     5641 agcgtaaaaa tgtacttttt ccgcctccac ttggacctat gatagctatt acatcgcctt
     5701 ttgagattgt agtgttaata ttttttaaaa cttctaattc tccatatttt ttttgtaaat
     5761 ttttaacttc aatcattttt attcatccta agttcaagtt tttttgcaaa atagctaaaa
     5821 atttttacac ttacataata aacaagtcca gtgaaaataa taggttttgg attgtaaagt
     5881 acggcttgca agctttgact ttgcatggta atatcaataa cactaataaa tcctacaaca
     5941 gaagtttcct taaataaaga aataaattca ttagctaatg caggtagaat gtttttagta
     6001 gcctgtggaa gaataatttc tttcattgaa gttttgtaat caagtcccat tgctcttgca
     6061 gcttccattt gtcccttatc tacactatta atgccacttc ttacaatttc tgctatataa
     6121 gccgagctat taagtcctag tgcaagaatg gctgcataaa ggttatctat aaaagtaaaa
     6181 attacaaaag caaaaatcat caattgtaaa attactggtg ttcctcgtat aatgtctata
     6241 tattcatcta taataaaatt aagcgtttta aatttagaga agtgtaaaat agctaagcta
     6301 aaaccaataa tcactccgat aataacagca caagcagtta ataaaagcgt aataagataa
     6361 ctttttaaat aagcttttgc attttctgta tagccatagc ttgcaactcc actaggatct
     6421 tgaattttta atatttctat cgggaaagaa aaatagcccc ataaaataat aataacaaaa
     6481 aaaacaaaaa ttcttatatt tttctgattc aatttgtaaa ccttttcaga gaaattattt
     6541 aaaaaaagat tttatagaaa tatctttgaa ttttctctaa agatttaaaa aaatgtgtta
     6601 gaatttccca aaaataaggt tgtatttatg gaaattttag atttcattct aatagttatt
     6661 tttgtgtttt taatgattgt tttggttata ggttttaatc gtcaaatgat gcaaaaaaac
     6721 aaagaaagag aagaaagatt taaaaaatat aaaaaaggag aacaaaatga gtaaaaaagt
     6781 attaattcca ttggctcaag gttttgagga agctgaattt ataggaattg cggatgtttt
     6841 aaaacgagca agagaattaa atccagattt ggaagttgtt atagcttcgt taaacagtga
     6901 gttattggta aaaggtgcta atagcattag tataaaagca gattgttcta tagaggatgt
     6961 tgatatagaa aatttagatg ccattgcttt ggcgggtggc tttgaaggta tgatgaatct
     7021 taagaattca aatgttattt taaatatcat taaacaactt catagcaaaa ataaaattgt
     7081 tgccgcaatc tgtgcttctc ctatagtctt aaatgaagca ggtgttttag agggcgagtt
     7141 tgcttgctat cctagttgtg aagttggact taatggaaat cgtgttaaca aggctgtagt
     7201 tgtaaataaa aatgttataa cttcagcagg tccagctacg gcaattcttt ttggtttaga
     7261 actagctaaa aagttatgcg gtgatgaaat ttatcaaaaa ttatatgagg gaatgttgct
     7321 acctttgaca aaatagttta aatggtagtt tttctaccat ttaaattaaa ataaagcttg
     7381 aggattttct ttttttgttt tttccttagg cagttcaaaa cctccaagca tatgaaaatg
     7441 caaatgaaaa acttcttgtc cactattttt tccacagttt gttaccaagc gatatccact
     7501 tttatctaca cctaaaagaa cagctaattc ttgtatgaaa cttgtcattt tggccataag
     7561 ctcaggatca aattcttgaa agtctttaaa atgtttttta gggattataa gtatatgtat
     7621 gggtgctttg ggtgcaatat catgaaatgc tagaaaatcg tcactttcaa gcactttatt
     7681 gcatggaagt ttaccttcaa ctatgagttc aaaaattgtt ttttcttgca ttatttatcc
     7741 ttttttattg ttggtttgat acaattatat ctttaaagtt tggtttttat gctgaattta
     7801 aaatagtttt taatagaatt agaacttgaa atattttatt taaggtaaga aaattgcaaa
     7861 attttataga acagattcaa aaatgtgaga atttaaatga tttggaagcc attaggattt
     7921 ccgttcttgg aaaaaaaggt attttaacag aaggctttac aaagcttaaa gagttagaag
     7981 atgaggcgaa aaaagaattt gctgctaaat taaatgcaca aaaagaaata tttaatgagg
     8041 cttatttagc caaatttaaa gatttggaaa atcttgcttt agaagaaaga atgaaacaag
     8101 atgctttaaa ttttaactat tttgatgaaa gtattacaac aggtgccttg catcctgtta
     8161 tgagcaccat ggataaaatc atagaatatt ttatagcttt gaattttagc atagaaaaag
     8221 ggcccttaat agaagatgac tttcataatt ttgaagcgtt aaatttacct aaatctcacc
     8281 ccgcaagaga tatgcaagat accttttatt ttgatgataa aaggctttta agaacacaaa
     8341 cttcgccagt gcaaatacgg acaatgcttg cgcaaaaacc tcctattagg atgatagccc
     8401 ctggtgctgt atttagaaga gattttgata ttacgcatac tcctatgttt catcaagttg
     8461 aaggccttgt ggtggaagaa gggcaaaagg ttagctttgc aaatttaaaa agtgtattgg
     8521 aagatttttt gcgttatatg tttggagatg tgaaagttcg ttttcgtcca agttttttcc
     8581 catttacaga accttctgct gaagttgata tttcttgtgt attttgcaaa ggaaagggtt
     8641 gtagagtttg caaacataca ggttggcttg aagttttagg atgtggaata gttgatccta
     8701 atgtttataa ttttgttggt tatgaaaatg taagtggtta tgcttttgga ttgggagtag
     8761 aacgttttgc aatgcttttg catcaaattc cagatttaag atctttattt gaaggtgatt
     8821 tgagattatt ggagcagttt agatgataat tactaaaagt tggttgaatg attggttaga
     8881 acttgaagaa ataagttcag ataaaatagc taaaacttta aactctatag gtatagaagt
     8941 tgatagggtt ggcgctttaa aggctccaga taaagttgtt gtaggctatg ttaaggaaaa
     9001 aattaaacat gaaaattcag ataaattaag catttgtcaa gttgatatcg gaagtgaaac
     9061 cttgcaaatt gtctgcggtg ctgcgaatgt tgatgcagga caatttgtag ctgttgcaac
     9121 taaaggtgct atcatgtcaa acggtatgga aataaaagaa gcaaaattgc gaggagtgga
     9181 ttcttgtggt atgctttgtt ctagcttaga actgggtttt gaaaaaatca atgaaggaat
     9241 tatgctttta gatgagagta tagggaaatt agaacttggg agacctttaa atacttatga
     9301 aatttttaat gatgagctaa tagaagtgga acttactcct aataggggtg attgtttaag
     9361 tatttatggt atagctcgtg atttagccgc agctttaaat ttaaatttaa aagaaccaaa
     9421 accatttaaa gaaagtgaaa atgttttagg tatcggtaga attttgcgct tagcagctga
     9481 gaaagaactt aatggacttt ataattatcg agccatagag ctaaaagaag aaattcaaac
     9541 aaatttattg cttagtttaa gacttgctca aattgaaggt ttgggaaaaa attccataga
     9601 aaatttatta aattatgcaa cgcattcaac tggtgttctt tttaatgctt atgatttaag
     9661 tagtttttct gaaaaagatg aagaatttac cattaattta agcaagcaag tgcatggaga
     9721 aacaaaagta tcttacaaag ataaactttt aagctttagc ggaattttcc aaaataatga
     9781 aagtagatgt aaagatgatt ctaaaataat tattattgag gctaattata ccgatccatt
     9841 ggtaattgca gatgctaaaa tatatcataa agatcaagat gaaaaaatgc tttatagaag
     9901 ttttagggga agtgaaccta aattaaattt aggaatggat tttttgcttg gtatttttga
     9961 gcagattcca aatcttgtta tttatagttc ttctcaacaa attttaactg acaaagaatt
    10021 accaatcata ccaataagta ttgaaagtat tagcgatata atagggcaaa atgttgataa
    10081 agatgaagta ttaaaaatat tgaaaaaatt aggttttgaa ctcatacttt caggtgaagg
    10141 gcttataaat gttaaagcac ctttacatcg tcctgatatt aaaaatttat cagatatttg
    10201 cgaggaagtt gtaagaatta taggtattga taatattgct tccaagggtt tggaatttat
    10261 agaaaaaaat cgtttaaatt ctgcatataa aaattatatt gagtttttga atttaaggaa
    10321 aagagcagta gctagtggtt attttgaaag cttacattat gttttggata atgaagaaga
    10381 acttaaaaga ttgggttttg actctgttaa attaaaacta atcaatccaa ttacagcaga
    10441 acttaatact ttaagaacaa cccttttaaa tcatttgtta aatgcagcaa gtttaaatgc
    10501 aaaaaattct aaaaaaatta ttaaactttt tgaattaggg gttgttttca atgttaataa
    10561 tcaagaatta aatcgtatcg catttatcca ttctggctta aaagaagaag ctaaaatttc
    10621 caacaaggcc aaacctgaat cggtgcaatt ttatgatttt cttttagaca ttaaaaatat
    10681 tataggtgat tttaaactaa aatcatcaaa atataatatt ttaagccctt atgaacaagc
    10741 agatatttat ctatcggata ttaaagtagg ttttataggc cgtttgcatt taaaaataga
    10801 aaatgagaga gatttaccaa aaacatatat ttgcgaactt gatttagatt taatcaggca
    10861 agattttaaa atagctaagc cttactccaa attcccagct atcactagag atcttagcgt
    10921 gttaatacct aaaggttttg aatacaatca gattaaaaat tgtatcgaag aattgaattt
    10981 agaaatactt gaaaattttc gtttagttga tattt
//
LOCUS       DARGEX010000055        10982 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.055, whole genome shotgun sequence.
ACCESSION   DARGEX010000055 DARGEX010000000
VERSION     DARGEX010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10982
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.055"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            12..1139
                     /gene="ftsW"
                     /locus_tag="SF010_001130"
     CDS             12..1139
                     /gene="ftsW"
                     /locus_tag="SF010_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009293817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG8230064.1"
                     /translation="MLITIGIVFSYSLTAFTVLFLDYSEFHFFIRQLFFGISGILIMF
                     FISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKRWIRLGPLSISPV
                     EFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGYIYITQNDLGQSV
                     ISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIASWWGNIQDAFLP
                     MLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLGFLSEVHTDFVLS
                     GITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIALLLLFSFFMNAFG
                     IISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1136..2164
                     /gene="murG"
                     /locus_tag="SF010_001131"
     CDS             1136..2164
                     /gene="murG"
                     /locus_tag="SF010_001131"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG8230065.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2135..3298)
                     /locus_tag="SF010_001132"
     CDS             complement(2135..3298)
                     /locus_tag="SF010_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEG8230066.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINFTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALS
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(3306..4157)
                     /locus_tag="SF010_001133"
     CDS             complement(3306..4157)
                     /locus_tag="SF010_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8230067.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(4220..5110)
                     /locus_tag="SF010_001134"
     CDS             complement(4220..5110)
                     /locus_tag="SF010_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8230068.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(5107..5712)
                     /locus_tag="SF010_001135"
     CDS             complement(5107..5712)
                     /locus_tag="SF010_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8230069.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(5702..6847)
                     /gene="thiH"
                     /locus_tag="SF010_001136"
     CDS             complement(5702..6847)
                     /gene="thiH"
                     /locus_tag="SF010_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG8230070.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(6850..7626)
                     /locus_tag="SF010_001137"
     CDS             complement(6850..7626)
                     /locus_tag="SF010_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG8230071.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(7629..8432)
                     /gene="thiF"
                     /locus_tag="SF010_001138"
     CDS             complement(7629..8432)
                     /gene="thiF"
                     /locus_tag="SF010_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG8230072.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(8429..8620)
                     /gene="thiS"
                     /locus_tag="SF010_001139"
     CDS             complement(8429..8620)
                     /gene="thiS"
                     /locus_tag="SF010_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG8230073.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(8617..10059)
                     /locus_tag="SF010_001140"
     CDS             complement(8617..10059)
                     /locus_tag="SF010_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8230074.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQTNVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTNSPNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTGGVQTNLSSIDMQNILIPKIDSTTQEKIAKY
                     IQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(10185..10688)
                     /locus_tag="SF010_001141"
     CDS             complement(10185..10688)
                     /locus_tag="SF010_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230075.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEAPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHSEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(10691..>10982)
                     /locus_tag="SF010_001142"
     CDS             complement(10691..>10982)
                     /locus_tag="SF010_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HEG8230076.1"
                     /translation="GDKIKGLEKVLFNKFKQSVNIKIFTIQSHESNIVQLVDLLIGAI
                     SYKARNDIEHVSEIKNYIINKIETLANIELDAGTPPWENKCNIFRIQLGKGE"
BASE COUNT         3703 a         1955 c         1378 g         3946 t
ORIGIN      
        1 atttaagttg tattttaatc accataggaa tagtattttc atactctctt acagctttta
       61 ctgttctttt tcttgactat agtgagtttc atttttttat tcgtcagctt ttttttggaa
      121 ttagtggcat acttataatg ttttttattt ctcgattgga ccctgataaa gcactttcta
      181 aaaaaattat tttagctatt ttgattattt cttttatctt tatcatcatt ttgccatttt
      241 taccttctgc attagcaaca gctagcggag gagctaaacg ctggatacgc ttaggcccac
      301 tctctatctc tcctgtggaa ttttttaaaa taggattgat ttatttttta gcatggagct
      361 atacaaggcg tattgatgat agcaaaaaag ctatcagaca cgaggcttta attcttctgc
      421 cttattgcat cttagcttct atagttatag gatatattta tatcactcaa aacgatttag
      481 gacaaagcgt aatttctttc tttttgattc tggctttagc tttttttgca ggagctagta
      541 aaaggctttt tgcttttgga actttaatta ttatgatgat aggtataatg gtaattttta
      601 gcaaccaaag aagaattcaa agaatcgctt cttggtgggg aaatatacaa gatgcttttt
      661 tacctatgct tcctgattgg ctggcaaatg ctttaagagt aagtagcaac agcgagcctt
      721 atcaaatttc acactcttta aatgctatag cccatggagg aatgtttggc gaaggcttag
      781 gacttggaac ttttaaatta ggctttttga gtgaagtgca tactgacttt gttctttcag
      841 gaattactga agaaatagga ctcttaggtc ttggggttat ttgctatatt tatctttgga
      901 tgattttaag aatttttaga attgcaggaa gatgtgaagc taaacaagat tttatttttt
      961 gttcaggcat agccttactt ttactttttt ctttctttat gaatgctttt ggtattattt
     1021 ctcttactcc actaaaaggc gtagcggttc cacttttaag ctatggagga agttcaatgt
     1081 gggcaatttg tataggcata ggatatgtat taatgatttc aaaaaaggtt aaattatgac
     1141 aatagcttta acaggtggtg gaactggagg acatttggcc atagtgcgtt gcttattaga
     1201 aagtgcgatt aaaaaaaata tagaatgtgt atacataggc agtcaaaatg gtcaagataa
     1261 agcttggttt gaaaatgaag tacgctttaa ggaaaaattt tttttaagct ctaaaggagt
     1321 ggttaatcaa agcaaatttg acaaaatcag ttctttgctc cacaccttaa aactctccaa
     1381 agattgtaga gaaattttta aaaaatacca catccaagcc gtttttagtg taggtggata
     1441 cagtgcagct cctgcatctt ttgcggcttt attctcacat ttgcctcttt ttatacatga
     1501 acaaaattca aaaagcggct ctttaaatat gcttttaaaa cctttcgcta caaaattttt
     1561 tagcgccttt gaaaaagaaa ttagccctta tcctgtagca gataaatttt ttgataatgc
     1621 taggattcgc aaagaattaa aaaatattat tttcttagga ggatcacaag gagctcaatt
     1681 tatcaacgaa ctagctttaa atttagcacc aaaacttcaa gaacaaaata tcaaaatcat
     1741 ccatcaatgt ggaaaaaatg attttgaaaa gtgcaaaaaa cattatcaaa gcttaaatat
     1801 ccaagctgat atttttgatt ttagtttaaa tttggaagaa aaaatgaaaa atgcagatct
     1861 agctatatca agagcaggtg caagtactct ttttgaactt tgtgctaata ctttgcccac
     1921 tatttttata ccttatcctt atgcagctaa aaatcatcaa tactttaatg ctaaattttt
     1981 acaagatcaa gctttatgtc aaatttttat gcaaaactct attaatcttg atgaattttt
     2041 taagtcaata ttaaaactaa atctagaaaa tatttctaca agattgcaaa atataaccca
     2101 aaaaaatggc gcagatatgc taatccaaaa agctttattt gataatttga cttttataag
     2161 ataaatatcc aaagatattt actaaaattc caacaaaaac taacatcaaa atagcaaatg
     2221 aaaaattttc aaatttgtca tgcaaaaaac ctataatcca ttgtccttgt gctgcaatta
     2281 aatatccaaa accctgagat aaagcagaaa gtctcgctgc tatttgagca ttagagcttt
     2341 tttgtgcaat aaaaagcaac gcaatgccaa aaactccacc ccatggaaaa cccatgataa
     2401 aagcactgat aataatagaa attttactat caaaaataaa gagcatacca aaagcgatca
     2461 catacatact gcacaaacct gctatgtaaa aagtatgtaa attttgtctt aattttccta
     2521 aaagtaaagg gccaaaaaga gacactggag ctgcaacaag ttgagcaaat aaaaccatac
     2581 ttgtagaaaa ttctttatca aatccttttt ctacaacaat ttgaacatac caaaaaaaca
     2641 aagaataagc taaaaaactt tgaaatccca taaaaagagt aattttccaa gttgtgaaat
     2701 ttataaaaag attgattttt ttatgagctt ttttcttaat acgaaaaaat ctaccatttt
     2761 tagcttgagg atagtaaact actaaagcta caaaagaaaa aatagcccag aaaaacatag
     2821 ctccagctaa atcaaataca ctaagcaaag gtatagctaa agcaataccc ataatcgaag
     2881 aaatactcaa aacaagacta taaattccca ttatacttgc catttttttt ggaaattttt
     2941 ctttaataaa actaggaagt aaaacatttg caattgctat accacagccc attgctaaca
     3001 ttcctaaaaa taagccatat acaccaaaat aagaacgaat aatttcgcct aaaaaaatta
     3061 aaaaaattcc aaaaacaata gcacgaatag gagaaaaata ccccacaata aaagaaatac
     3121 ttccaaaagc tatcaaagga agacttgtaa gtatacctgc tacggttgag tttaaataat
     3181 acttatcttt aataatatca ataataggcc ccactgcagt aattggggct ctaagattaa
     3241 aagctacaat aataacaata ataacattaa tccaaaatat ctttttaaaa gaagccataa
     3301 aagccttatt tgttaagttc tactttgaat attttacctt ctgccatctt aggaatccat
     3361 aaaatattac cttcaataaa tatatctgca ggacctttca tcaaaggaag ttcaagtttt
     3421 acagatttaa cattatctaa attataaata tatccattta gattatttcc ccaagaactt
     3481 accaataaac catctttata aggaactatt ccatcataag attctttttc atttttaatt
     3541 atactgagtt cttttgtatt taaatcataa gccattacaa caccgccact tacaccatca
     3601 ggatgataac cagttataaa aagcttatgt ttttttctat ctagatataa cccatttgga
     3661 ccgccaaatt ttgctaaatc aagttttaat aattcatcat attgcttagt ttttaaatca
     3721 acctttaaaa taagccctgt gccagtatcg ctaaccaaaa gcgtattgtc gtctaatttt
     3781 tctatgtcat ttaaaaagat tgcaccttta ataggtaaat taaaaatttc ttttttagtt
     3841 ttaagatcaa aaccgcgtaa aacatcgata tctaccacat aaagagtttt tccaatctcc
     3901 atcatgcctt ttggtgcatt aagatgggtt aaaaatttat attctagcac tttgccattt
     3961 ttatcaagct tagaaataaa tccatcatta tctttcgcca aaggttcaag tttttctcct
     4021 acattagata cataaacata gtttttatct acaaaaatac tttcagggct tttaaaacca
     4081 tcaaattctt gatattttaa ttcacttgca ccaagcaaac ttccaagaag cgctaaactt
     4141 aaaacatatt ttttcatatt ttctccttta tttaaaaata ttttcattga attatattta
     4201 tttagataaa aaaaatgtgc tagttttttg ataaaaaata caagtttttt gttttttgat
     4261 attgcttagg agtttgctca tatttctctt taaatctttc aataaaccaa gctaccgaag
     4321 aaaaagcgca ctcattagct atttcattga tatttttttt agaaaattta agtaaaatct
     4381 ttgctttttg caaccttttt tcatctaacc attttttagg actttgtcca aaacatttct
     4441 taaattcttt agaaaaagtt gctaaatcta atttcgcaaa attagacatt tcatttacgc
     4501 ttaaaaattc tctaccacaa tactcaaaaa gttgggaaag atcaaggcga aattctttta
     4561 aaattcctga taaaaaacta ataaaataaa tattcttatt taaaagcaaa tgtaaaaaaa
     4621 tctcttcaaa tttcaaactc actataggat ctaaaatttg cgtattttct tcaaaatgcg
     4681 gtgaaaaact ttccaaaatt ccttgcaaaa tcttatcatt ttttacccaa aaaatttcat
     4741 agttttgaaa cttttgatct agtttaaaaa aatctttata cttataaata agctcaatta
     4801 aaaatgcatt gtcaaaaaaa aataaataag cttcataaac tcctttacta agtcctacat
     4861 tgcttaaagt atagctccca gcttttaaaa acaaagtttc ataagagtta atcttataat
     4921 cttttgatgc agtgtgtaaa attttatatc ctttgcgaac aaaagttaaa agatgacttc
     4981 ctacattaac aaaagtagaa tgcgaagtat ccgtttgtgt atatttagca aaagtgcaag
     5041 atttaatttt tttataattg acacctttta attgctttaa atcttctggt aaagaaagaa
     5101 ttttattcat cgtaaatttt gcctacattc taaaagatac tttttaagat ctttttcttt
     5161 cattaaaatt tcacgcatgc aaacacctac tacatttata tctttaaaat tttctatatt
     5221 ttgagcattg ataccgccta tagcataaag tggaatttga ctaaattcaa gcaaggattt
     5281 taaaaaatca agccctttag gttctaaacc catcttgcaa gaactttcaa aaatatgccc
     5341 tacaaaagca taatttacct tatagctcat cgcctctaaa agctcttctt tgctatggac
     5401 tgaagtacca agtatatgaa aatattttgt taatttaggt tcttttctta gcaaagaaag
     5461 cggtgcgtga aaataacgat gtcccaattt taaacactcc ctatcaaaaa aatgcaaaaa
     5521 acaagtcact ttttgctttg cgcaaatgct taaaacttct tttgctaagt cataatactc
     5581 aaattcgctt aaatcttttt ctcttaaaac tatagcatct accttagcct tagcaagttt
     5641 ttcaatctgc tttaaaaagt ctatttctac acattttcta tcgcttatgg cgatgatttt
     5701 tttatcccac atagatacta tcgctcatca cagcttgtaa attggatctt ttaagcatag
     5761 ctaaaatttc atccacgctc ctatcatctg aaatttcaaa ctgctcatca ccctttttct
     5821 cacccttatg ctcacctata cccacactca ctcctgcact cattttagta gcaccaagct
     5881 tgataacctc atctctaaag cctattcttt cacgacttga aatggtaatg cctgcaaaag
     5941 gtaaaaaaag tctataagca caaagtactt gcaaaaggcg tttttcactc acatctttag
     6001 gatgaatttt agcattattg ataataggtc ttaaacgagg caccgaaata gaaatttcag
     6061 catgaggata agcttgttgt aaaaaatgcg catgaagtgc cgtagcaagg gcgtcttttc
     6121 taaaatcatc tatacccaaa agtgcgccaa aagccactcc acgcataccc gcttttaaag
     6181 ctctttcttg agcattaaag cgataaggga aaatgcgttt ttcaccagct aaatgaattt
     6241 tagaatattt taaagcattg taagtttctt gaaaaacagt cacataatca caaccctttt
     6301 catgcaaaat tttatattca tcttcattca taggataaat ttcaacgcct acaaccttaa
     6361 aatactctct agctatttta caagcatttg ctatatattc tacacttgca aactccctac
     6421 cctcgcctgt tagcattaaa atttcttcta aaccactttt agcaatggct tgcatttctt
     6481 cgtgaatttc agcttcactt agcttggctc ttgcgatttt attacctttt tgaaaaccac
     6541 aataaacaca tttagaatta caataatttg acaaataaag tggggtaaaa agagagatag
     6601 aatttccaaa atatttttgc ttgactttag cggatttaaa ggctaattct tctatgaaat
     6661 cttctgctgc acttgaaagc aaagctttta aatgctctat gcttaaatgt gtttgattta
     6721 aagcattttt aacatcttta gcgctaaatt gactctcatc ataactttga acttgagtta
     6781 aaaccttgtt taaaatttcg ctttttattt cctgcatatg aggtaaatac tgcatataat
     6841 cttgcataat caatccctta aaaagcctgt taatggagaa cttgctttag ctttactcac
     6901 acttgccaaa cctgctaaaa aagccgctct tcccgcattt actgccaaag aaaacgcttt
     6961 ggccattaaa gcaacatctt ttgcttcagc tatggctgta tttaccatca ccgcacttac
     7021 tcccatttgc atagcttcac aagcttgtga aggacttcca atacccgcat ctacaatgat
     7081 aggcaaatca atttcattaa gcaaaatttg tataaattcc ttagcacata agcctttatt
     7141 actcccaata ggcgctgcta aaggcatgat agccgcagct ccagcatcac gcatagctct
     7201 agctgcgtaa agatcagcat gcatgtaagg taagggtgta aaaccctctt tagctaaaag
     7261 ctcgcaagct ttaatcgttt cataattatc aggcaacaaa tacctactat cgcttatcac
     7321 ttctatcttg ataagttctc cacaaccaag ctctcttgaa agccttgcaa tgcgtaaagc
     7381 ttcatcggcg tttcttgcgc ctgaagtgtt gggtaaaagt gtgatatttt tagggatata
     7441 atcaagtata ttagcaattt cccctgtatt tgcacggcgt aaggctagag tgataatctg
     7501 tgttttagct tcttctatag ctgattttat aagctctagc gaatattttc cagaacctaa
     7561 aataaatctt gaatcaaact cgtatttgcc tatttttaat ttatcgtttt ttaaattttc
     7621 ttgcattttt actccttatt tgctaaaagc tctaaaacaa ggttactttg atgtcctgcg
     7681 caaatattta cccttggcgc cataagtcca tttcctagct tagcaccatt taccaaatcc
     7741 ccacacacat agaaattttt agcaattttt cttgtttgta tgctgttgct atcaccatag
     7801 cccgcaagcc ctgaagcaca gattaaaaca ctatctttgt aaaatctatg aaaattttgc
     7861 gctatcatcg cttttgcgat agcactatca aaggcttcac aaactatatc tatatcttta
     7921 aacaaagatt ttaaattatc ctcatcgatt tttaaggtac aaatttcaac gctgatataa
     7981 ggattaattt cgctaatttg ctcttttaaa gcttcggttt taaacttgcc caaatcactt
     8041 acacgataag cctgacgatt taaattacta ggctcaatca catcaaaatc aatcaacttt
     8101 aaatacccca ctccacttct tgccaaattt atcgctatat gtgatccaag tccgcctaaa
     8161 ccacacaccg ccacgcgccc atttttaagt ttatcgtgaa gctttggtgt atgtcttgct
     8221 ctcatcatag catctagtgc gtcttttgga ggtaaagtat ttttttctat acaaaaaagc
     8281 tcatcatttt catttaaagc gatattctct tttgttgcaa aaccattgat aatccataca
     8341 tcattttcat ttttgctgat attttcaaaa aattccaaac ttgttttaaa gtctgtatca
     8401 agttctttgc cattaaattt tactctcatc atccacctcc tacaaaactt acgatttcag
     8461 ctttatcgtt ttcttttaaa atcaaatttt caaattcact cttaggtata atctctccat
     8521 ttaattccaa ggcgataagt tctattttca agcctttttc tttgataaaa tccataaatt
     8581 taagctcttt taactcaagc ttttgtccat tgataatcat atttttcctt gtatttgctc
     8641 ttctacttta atttttgcat tatctaataa ttgtttagat tttttcctta aattaaagct
     8701 ttcttgtata tattttgcaa ttttttcttg agttgtagaa tctattttag ggataaggat
     8761 attttgcata tctattgaag aaagatttgt ttgaacccca cctgtaccaa ttctctcaaa
     8821 ttgcatttta caaataaaag aatttaaaag caataccaaa acatcactat taaaattttt
     8881 aatcgaaatt tttaaaatcc tttgattaac catagctgat atatcatctc taaccacaca
     8941 agacaaacca atgctaccag acatagaaat taaaatatca ccttttttta ttttatcttt
     9001 agggcttaaa ttataagctt catttttaag atagataaca ttgcttaaat ctagcgtagc
     9061 attttttata ttattaatcc taattaatac aagctctcca acatcttggt agtcatcact
     9121 tgaaaatgca aaaccacttg aaatatcatt aactaaatct tttaaattac aaaagccatc
     9181 tttataactt ctaatcatct tttctatgtc ttcatattta ctttgataat attcagaatc
     9241 caatcttcct gtttttagaa aagattcttt taatgtgtgt atagagatat ttggtgagtt
     9301 tgtaggatta tttgttttag aatctagcaa actttgcaat ggattctttg gatcaagtcc
     9361 taactcaagg tataaagttt cctctgcttt tttatacaac tccttacttt cttctaatgc
     9421 cttatgagaa tcttttacca aattttgaat ttctaactga aattccatag ggaaaatggg
     9481 aattttaatt tcttttaatt cttcaggatt tacatttgtt tgattaattg atggtctagc
     9541 ccttcttctt atctcttttt taccaatatg cgtatttaaa aaaactgtaa gatactctgg
     9601 caacagaatt tccttattgc aaacaagcct tactaaatat gaagcaaaaa caaagttttc
     9661 tctattgtta taaaaaattc ctgttctacc cacaaactca taggaatttg ttctattaaa
     9721 caaaacatct ccataattta acctaaaagt ttgcaattca tttttatcaa ttaaagcata
     9781 ttttttgact tcaaaattac aaagcatatt atcaatgtca ttcattctat aaatagggat
     9841 accatcgccc tcttcattca tatttattga aataccatat tgagatttta ataaacattc
     9901 tcctattttt ttatagttca acttattgtt ataaataagc ttcattgtcc aaaaactatc
     9961 atctatgcga aaatctatat tttttttcac ttcactaagt tttaatacac ttacttctaa
    10021 atgcgggtat ttttcctgca aagtttggtt taaattcatt ttattccttt ttttatttca
    10081 atctaagtaa aaaatattta taattataaa gctcaactac cggtggtaga aagagatggc
    10141 tagcttttat gcttcttgca gatgcctaaa tctgcaccaa acccctaaaa ccattcgcaa
    10201 ttctttagct ctatatcatt tccgtttata taatttctat atcttttttc ataaatattt
    10261 ttattatatc ctttatctat gtagaaactt gtcactaaaa atgaactact tctgcctagc
    10321 ttttgtaaaa taactataaa attatggtta tataaccaca aataaaaacg gattgcccgt
    10381 ttctctttat aataaaaagc tttaatttcg gaatgagtat gattgataat aatttgttta
    10441 atccaattta ttctgcaagc tctttggcta tcaaactccc ttgttttatt ttgtttgttt
    10501 tctcgtgttg tgatatgcca aaatatcttt tctttcccct tatgcttctt atgtgattgc
    10561 ggatctatat aaatacaacc tgctaaatac aatggagcct caataaagtc ttgtttgaaa
    10621 attttataag ctaagtcaaa tttttcattt tcacatttac aagtgctaaa atccaagaga
    10681 tgatacatta ttattcacct ttacccaatt gaatcctaaa aatattacat ttattttccc
    10741 aaggtggcgt tcctgcatcc aattcaatat ttgccaatgt ttcaatttta tttataatat
    10801 aattttttat ttcacttaca tgctctatat catttcttgc tttgtatgaa atagcaccta
    10861 ttaacaaatc cacaagttga acaatatttg attcatgtga ttgaattgta aaaattttta
    10921 tatttactga ttgtttaaat ttattaaaca aaactttttc caatcctttt attttatctc
    10981 ca
//
LOCUS       DARGEX010000056        10215 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.056, whole genome shotgun sequence.
ACCESSION   DARGEX010000056 DARGEX010000000
VERSION     DARGEX010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10215
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.056"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            124..1392
                     /locus_tag="SF010_001143"
     CDS             124..1392
                     /locus_tag="SF010_001143"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG8230077.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            1472..2236
                     /locus_tag="SF010_001144"
     CDS             1472..2236
                     /locus_tag="SF010_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG8230078.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPITSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRSVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            2276..3040
                     /locus_tag="SF010_001145"
     CDS             2276..3040
                     /locus_tag="SF010_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230079.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
     gene            complement(3048..3824)
                     /locus_tag="SF010_001146"
     CDS             complement(3048..3824)
                     /locus_tag="SF010_001146"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG8230080.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDQNKDFIHLRIGCKTKSSKIYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPNGASFGSIFKNPKNDFAGRLIEAVGLKGFNKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIKLARKKVFEEFGINLENEVIII"
     gene            complement(3821..4090)
                     /gene="fliQ"
                     /locus_tag="SF010_001147"
     CDS             complement(3821..4090)
                     /gene="fliQ"
                     /locus_tag="SF010_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG8230081.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            complement(4102..4962)
                     /locus_tag="SF010_001148"
     CDS             complement(4102..4962)
                     /locus_tag="SF010_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG8230082.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            5068..6099
                     /gene="recA"
                     /locus_tag="SF010_001149"
     CDS             5068..6099
                     /gene="recA"
                     /locus_tag="SF010_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG8230083.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            6099..7343
                     /gene="eno"
                     /locus_tag="SF010_001150"
     CDS             6099..7343
                     /gene="eno"
                     /locus_tag="SF010_001150"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG8230084.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            7409..7612
                     /locus_tag="SF010_001151"
     CDS             7409..7612
                     /locus_tag="SF010_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230085.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            7602..8264
                     /gene="cgpA"
                     /locus_tag="SF010_001152"
     CDS             7602..8264
                     /gene="cgpA"
                     /locus_tag="SF010_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG8230086.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            8264..9112
                     /locus_tag="SF010_001153"
     CDS             8264..9112
                     /locus_tag="SF010_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG8230087.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            9155..9232
                     /locus_tag="SF010_001154"
     tRNA            9155..9232
                     /locus_tag="SF010_001154"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9190..9192,aa:Pro,seq:tgg)
     gene            9257..9333
                     /locus_tag="SF010_001155"
     tRNA            9257..9333
                     /locus_tag="SF010_001155"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9291..9293,aa:His,seq:gtg)
     gene            9337..9413
                     /locus_tag="SF010_001156"
     tRNA            9337..9413
                     /locus_tag="SF010_001156"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9371..9373,aa:Arg,seq:tcg)
     gene            9428..9504
                     /locus_tag="SF010_001157"
     tRNA            9428..9504
                     /locus_tag="SF010_001157"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9462..9464,aa:Arg,seq:tct)
     gene            9509..9593
                     /locus_tag="SF010_001158"
     tRNA            9509..9593
                     /locus_tag="SF010_001158"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9543..9545,aa:Leu,seq:tag)
     gene            9768..10184
                     /locus_tag="SF010_001159"
     CDS             9768..10184
                     /locus_tag="SF010_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230088.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
BASE COUNT         3623 a         1479 c         1797 g         3316 t
ORIGIN      
        1 aaaaaatgaa agttactttt ttactcaaaa aagcaaataa aatcttaaaa atttaataat
       61 aaaaaaactc ataatcgtcc ttttttgtta gaattaataa aagtaacaat aaaaggagcg
      121 aaaatgtcaa attccgttac tataaccgat aatagaaatg gaaaaagcta tgaatttcct
      181 atatatgacg gtacaactgg gccaagcgtt gtagatatgt caagttttta taaacaaaca
      241 ggaatgtttt cttatgatga gggcttgact tctacagcta cttgtaaatc aaaaatcact
      301 tatattgatg gagaaaacgg aattttaatg caccgtggct atcctataga gtggcttgct
      361 gaaaacaaac tttatttaga tgtggttcat cttttgcttt ataaagaatt gcctgatgct
      421 acgcgtcttg aagcatttcg ttatgaaatg aaaaagcgtt cttttatcca tgaaggtatg
      481 catcgtcttt ttgattcttt ccctgataat gctcatccta tggcagtttt acaaggtgct
      541 gtttcatcgc ttagtgcttt ttatcctgat catttaaaca tgaatgtaaa agaagaatat
      601 atggaaatgg cagctagaat agtagctaaa atccctacta tagtggctac tgcttataga
      661 tataaacacg gctttcctat ggcttatcca aatttagatc gtggttttac agaaaatttc
      721 ttatatatgt taagaaccta tccttacgat catgtagagc ttaaacctat agaagtaaaa
      781 gcacttgata cagtttttat gcttcatgca gatcatgagc aaaatgcttc aacttcaaca
      841 gttcgtgctg tgggttcaac tcacgctcat ccttatgcct gtatagcagc aggtattggt
      901 gcgctttggg gtcatgcaca tggtggagct aatgaaggtg ttattagaat gcttgagcaa
      961 ataggtagtg ttgatagggt agatgaattc atcaaaagag ctaaggataa aaacgatcct
     1021 ttccgcttga tgggctttgg gcatagggtt tataaaaatt ttgatcctag agcaaaagta
     1081 cttaaaaaac ttcgtgatca acttattgat gagttgggta ttgataccaa tcttattaaa
     1141 gtagcaacgc gtatagaaga gattgcttta agtgatgatt attttgttca aagagggcta
     1201 tatccgaatg ttgattttca tagtggactt attttaaaag ccttaggtat tccaaatgaa
     1261 atgtttgcta ctttatttgt tataggacgc accccaggat ggatagctca gtggatagag
     1321 caaaaagagc aagaaagtct taaaatagtc cgtccaagac aactttattt gggtgaaact
     1381 agtaaaatat aattaaaatt tttgtggaaa ttaaaaattc cacaaaatct tcttgtataa
     1441 ttttaaaaaa tcttatagaa agtttataat catgcttaat cttgataaat ttttagaaat
     1501 tgctataaat gctagcaatc aagcttctaa agctatttta gaagagagaa aaaatttcaa
     1561 aacttgggaa aaagaagata aaagcccgat tacatcagca gatcttgctt ctaataaaat
     1621 tctaaatgat attttgggtt ctacggatat taaaattcta tcagaagaaa aattactcag
     1681 caaagaagag tgtgaagaat taaaaacttt ttggcttatc gatcctcttg atggaacaag
     1741 tggtttttta aaaggcagtg atgaattttg cgttatgata agtttggttc atgacaatcg
     1801 ctctgtttta tcactcatac aaaatccatc aaaaggtgat atattctatg ctcatgcaaa
     1861 aaccaaggtt tataaaaacg ataaaccttt gcaaattgac cagcaagaat acgagaaaaa
     1921 taaatataaa gccttattga gtgttaatca tcttagcaaa gaagatgaag actttgcaaa
     1981 agagcatcaa ttagaagcta ttaatatagg ctctggattg aaattttgtg ctattttaga
     2041 ggctagggca ggagtttata aaagatttga aaagcttaat atttgggata ttgtagcagg
     2101 agattttttg attaatcaaa atggaggatt tatgggagat ttttctaaaa aatacatttt
     2161 atatagccct ttaaattata aatccagtcc ttttatttgt gtttcatcta ggaatttttt
     2221 acaagatttt ttataaaata aagagtataa ttttatattt aaatagttta taaggatgaa
     2281 gatgaggtat tgtttcattt tgtttttaag tttagtttta agttctaatc ttttagcgaa
     2341 taatttttct cagaaaaaag ttattaaaat tgaaaaaagc gcagatagtt ttgaagtaat
     2401 agatctaaat caaaatgttg caaatccaaa tctaaatcaa caaaaagcat tgtttgatag
     2461 ttctaccttg attgaaaaaa aatcgcaaat caccaaagat aaagatattg attttgccat
     2521 tgtattaact tctaggaaaa attttggtta ttttttagat ggttttaggg tgagtgataa
     2581 ggaattttct acattatttg ctaaaaattt gattcaaagt ttaaggcttg attgggttaa
     2641 ttctgctgca aatggtattt atcaaagtcc taaaactttg tcatatttta gccctaagga
     2701 tgcaaaactt ataaatgtca gtcctttttt aacacaagaa aaagataagg ctaaaatgta
     2761 tgccaaattt acagattatg ttgtggtggt aaatttgcaa gatttttatg taaatattac
     2821 aaattatttt atcacaacta gtaaagaggg tgtggctagt gttaatttta aaattatttc
     2881 tacaagcaat ggaaaaattc ttgcagcaaa aaatgcaaaa ttaaatttga tattaaaaga
     2941 tcaagataca aaacaaaatt atcaagatat tgtaaatcaa atgccaaaaa tgttagctag
     3001 tgttatagat aatgaaataa aaaaattaaa gatatattga aaaattttta gataataatc
     3061 acttcatttt ctaagtttat gccaaattct tcaaagactt tttttctagc caatttgata
     3121 agaaaaaacg catcttcaaa acttgcattt tttttattga ttaaaaaatt tgcgtgttta
     3181 tcgcttaaca tagcatctcc cttgttaaat cctttaagtc ctacagcttc gattaaacgt
     3241 cctgcaaagt cgttttttgg atttttaaag atagagccaa agcttgctcc attaggttgg
     3301 ttgcttcttg cattttttaa agcttcatct ttaagggtat caaagccaaa atttagttta
     3361 aattcagccc aaaaaaaagg catatttaaa ggacaaaaac gataatcaaa atttatattt
     3421 tctcttagaa tttcgccttg agaagtagca attttgatta aattttgact gatacactct
     3481 cctttaagcc ctgcattcat tttcaaaaga ccaccaagtg tgccaggaat tttgcttaaa
     3541 tactcaaaac ccttaagatt attttcttta gcaaagcgat atattttact tgattttgtt
     3601 ttgcagccta tgcgaagatg tataaaatct ttattttgat ctaaaatttg tataaaatta
     3661 aaaccatctc ctaaaattcc tatattttta ggttttggac taactaaaag gttgtttgca
     3721 ccacctatta aaaaaccatc aaaatcacaa atttgatcca aaactaaaac ttcaaattca
     3781 tttcctatac gcacagaaga gtatttttta aaatcaatga tcatttgata aaagttggaa
     3841 tttgatttag tatattctca gtaaaatcaa tcatagttgt agtcatccaa ggcattaaaa
     3901 agattaaaat aactacaacc aagatgattt taggaacaaa agaaagtgtc atttcgttaa
     3961 tctgtgtagt tgcttgaaaa atactgatca caagccctgc aataagtcct gctaaaagca
     4021 taggcaaaga aagtaaaagt gtgattttaa aggtttgcac tccaagagca actaaggtac
     4081 tttcatccat ttttatcctt tttaagaatt tctagcttct tcgtattcgc tagggataag
     4141 aaaatcattt acatgtatga ttttatcata aaatttataa tcatatccta gtttaaaaag
     4201 cgtatctaca gctaaaagtt gagtttgatt catgctaata gagtttttat tggcatataa
     4261 attaagataa gtatcaagtt tttcttcatc aacacggata agttttcttt ccataagcat
     4321 aggggctaaa attttacgat ttgcatcggc aatttttaca gcattggtta aatctctttc
     4381 gatcttaatc gcgtcgctta aaggtaaaga acgacgcaaa gccattccac ctaaaggcaa
     4441 aggcaaattt tctttagcaa attcaagcca tatatcccaa agttctgctt ccacgtaaag
     4501 actttgatca aaatctaaaa tgctttcatg gatcaaaacc cccgcatcta cttcgccact
     4561 taaaaccgca ttttcaatgt ctaaaaaatt cttataaata attcttgctt caggatattt
     4621 catgcgaaaa atcaaagcat tggtggtatt tgctccactc aaagcgactt taaaatttct
     4681 ttttaaatgc gtgtcttttt tcttgatgag ttttggccca taaccttcac caaaactcac
     4741 tgctgtgcgt aaaagtgcat actcagaagc gattaaagga taaagcccaa aagaaatagc
     4801 cgtagcatca aattcatttt tcaaggcaaa ttcatttaaa gtttgtatat ctaaagctgt
     4861 attttcataa gcaaaatcat tccctatcca cccaaattta attgccatat acataaaaat
     4921 atcatcagca tcaggagaat gtgcaatagt aatttttttc atctatgctt cctttaaatc
     4981 tttgctttaa ttctagcaaa ataaatcatt atttaatttt attttgttag aattctaact
     5041 aaaaatttag aatttttaag gaaagttatg gatgataata aaagaaaatc tctagacgct
     5101 gccctaaaaa gtttagataa aacctttgga aaaggcacta ttttaagact aggggataaa
     5161 gaagtcgagc aaatcgatag cataggcaca ggttcagttg ggcttgatct tgctttaggt
     5221 ataggcggtg ttccaaaagg aagaattata gaaatttatg gacctgaaag ttcaggtaaa
     5281 accactctaa ctttacatat tatcgcagaa tgccaaaaag caggtggagt ttgtgctttt
     5341 atcgatgcag aacatgcgct tgatgtaaaa tatgctaaaa atttgggtgt aaatacagat
     5401 gatttgtatg tttctcagcc tgattttgga gaacaagcct tagaaattgt agaaactata
     5461 gcaagaagtg gcgcagtaga tcttatcgta gtagatagcg ttgcagcgct taccccaaaa
     5521 gcagaaattg aaggcgatat gggcgatcaa catgtaggac ttcaagcaag acttatgtct
     5581 caagctctaa gaaaacttac aggtatagtt cataaaatga ataccacagt aatttttatc
     5641 aaccaaattc gtatgaaaat cggtgctatg ggttatggta ctcctgaaac cacaacaggt
     5701 ggaaatgcat taaaatttta tgcttctgtg cgtttagatg ttagaaaagt agcaacctta
     5761 aaacaaaacg aagaacctat aggaaaccgc gttaaagtaa aagtagttaa aaataaagtt
     5821 gctcctccat tcagacaagc tgaatttgat gtgatgtttg gagagggttt aagccgtgaa
     5881 ggtgaattga tcgattatgg tgtaaaactt gatatcgtag ataaaagtgg tgcgtggttt
     5941 tcttataaag ataaaaaact tggacaaggt agagaaaatt caaaagcttt cttaaaagaa
     6001 aaccctgaaa ttgcagatga aatcacaaaa gcaattcaaa attctatggg aatagaaggt
     6061 atgatcagcg gtagcgaaga tgacgaagga gaagaataat gttagtaatt gaagatgtta
     6121 gagcctatga agttcttgat agtagaggaa atccaaccgt aaaagccgaa gttacgctaa
     6181 gcgatggaag tgtaggtgcg gccatagttc caagtggtgc aagtacaggt tcaaaagaag
     6241 ccttagaatt gcgtgataat gatgaaagat ttggcggaaa aggcgtttta aaagctgttg
     6301 caaatgtcaa tgagaccatt gcagatgaaa ttttaggact agatgctttt aatcaaactc
     6361 aacttgatga tactttgcgt gagctcgatg gaacaaataa ttactcaaat ttaggtgcaa
     6421 atgcgacttt aggcgtatct atggcaacag ctcgtgcggc tgcagctgct ttgggaatgc
     6481 ctttatatcg ctacttaggt ggtgcaaatg cgagcatttt acccgtgcca atgtgtaata
     6541 tcataaatgg cggtgctcat gcaaacaaca atgtagattt tcaagaattt atgatcatgc
     6601 cttttggttt tactagcttt aaagaagctt tgcgttcagt ttgtgaaatt tatgcgatat
     6661 taaaaaaaga actcgcaaat tctggacatt ctacggcttt aggtgatgaa ggcggttttg
     6721 ctccaaattt agctaacaac acagaaccta tcgatctttt aatgacttgt atcaaaaaag
     6781 caggttatga aaatcgtgta aaaattgctc ttgatgtggc aagtacagaa tttttcaaag
     6841 atggtaaata ccacatggaa ggcaaggctt tttcaagcga ggctttgatc gaacgctatg
     6901 tagaactttg tgcaaaatat ccaatttgca gtatcgaaga tggcttagct gaaaatgact
     6961 ttgaaggctg gatcaagctg actgaaaaat taggcaataa aattcagctt gtaggcgatg
     7021 atttgtttgt gaccaatgaa gatattttaa gagaaggtat catcaaaaaa atggcaaatg
     7081 ctgtacttat caaaccaaat caaatcggaa ctattaccca aactatgaga actgtgcgtt
     7141 tagcgcaaag aaataactat aaatgtgtga tgagtcatag aagcggcgaa agtgaagatg
     7201 cttttatagc ggattttgct gtggctttaa atacaggaca aattaaaaca ggagccctag
     7261 caagaggcga aagaaccgca aaatacaatc gcttacttga aattgaattt gaaagcgatg
     7321 aatatttagg agaaaagctc tgagcgattt acttaaagaa tacgacgaaa gcacaagaaa
     7381 aaaaagtttt tatacccatg ttataaaaat gattttttgg gcttttcttg ttgtaattgg
     7441 agcgatttat tttggcaata tgttttttgg gcagtattct ttagatactt tattaagctt
     7501 agaaaatacc aaagaagagc ttaataaaaa gattattttg ctcaaagaac aaaatgctaa
     7561 agcacaaaaa gattattttg aattaaaagg attataccca aatgaaaact agaattttgg
     7621 caatattttt tattttcacc tctcttttat atgctgatga aaatcctttc aagacagatc
     7681 aaaatataac cttggttgct ccacctgaat ttcaaaaaga ggaagttaaa tttaattcta
     7741 gtgcaagaat tttaaaaagc atcactttta attatatcaa tttagacgga agtgaagata
     7801 agatcgattt agatgtcaat aaaagtattg attggcacga tacttatact atatcaagat
     7861 ttaaaagccc tgatccttca aaagtacttg atgtttcagt tactatacct gaaaaaaata
     7921 gctctaaaca agaatcaaac tcaacagcca atgttgaaat acctttacag gttgcaaaga
     7981 tttatgattt tatttcttat gcggtttata aaaataaaat aaaacttaac actagtgatg
     8041 aaatgattac agatttttca gtaggaaatc caagtaaaat cgttatagat tttagatcta
     8101 aaatgattag ccctacaaaa aacatacgcc ttagcaattc tatttttaaa cgcatagact
     8161 ttggatctca taaaggatat tatcgacttg taatatatct tgatggaact tataattata
     8221 atattcaaaa agatgcaact ggatatatga ttaatctgct ttgatgaggt ttgttttttt
     8281 aatatgttgt gcttgtttag tttttgctaa tgaaatttta cttcttagca aattcgataa
     8341 gcaagatttt aactctaaag attttaatgc ttatttgatg agcgaaaaac ttgatggagt
     8401 gcgtggaatt tgggatggga aatatctaaa aactcgccaa aactacaaaa taaaaactcc
     8461 tgactttttt acaaaaaatt tccctccttt tgctattgat ggtgagcttt ggatagcaag
     8521 aaataaattt gatgaaattt cagctttaat tcgtagtggc gatagcaatt tgaccttatg
     8581 gaaggaagta acttataata tttttgatgt accaaatgct tgcgaagaat ttcaaatttc
     8641 tacttgcact cttaaaaatc gtttggctgt tttagaagag tatttgcaaa aatatcctag
     8701 tgcctatata aaaattattt ctcaaattcc agttgaaaat caaaataatt taaatcaatt
     8761 ttacgaaagc attataaaaa atcaaggtga aggtattgtt atacgcaaaa atttaagtcc
     8821 ttatgaaaaa ggcagaagta aaaatgccac gaaattaaaa ccctatgatg atgcagaatg
     8881 tgagttggta ggatttcgca agggcaaggg taaatttgaa aatcaagtag gtgccttact
     8941 ttgtaaaatg cctaatggac aaatcattaa aataggcagt ggtttaaaag atgaagatag
     9001 aaaaaatcct ccaaaaattg gtagtattgt gacttataaa tttaatggat tgaccaaaaa
     9061 ttccttacct cgctttccgg tgtttttaag aataagagat gaaaatcctt gactttaaaa
     9121 ttattttgtg ataaaatatt tccttttatt tattcggggt gtagcgcagt ctggttagcg
     9181 cacttggttt gggaccaagg ggccgaaggt tcgaatcctt tcaccccgac cattttttat
     9241 aaatttatac aaaatggtga gtgtagctca gtcggttaga gcatcagatt gtggtcctga
     9301 gggtcgtggg ttcaattccc atcactcacc ccactagcgc tcgtagctca actggataga
     9361 gcgacagact tcggatctgt aggttatggg ttcgattcct atcgggcgca ccaccaagat
     9421 tttatatgcg ttcatagctc agctggatag agcaacggcc ttctaagccg taggtcagag
     9481 gttcgaatcc tcttgggcgt accactttgc ggatgtggtg aaattggcag acacgccaga
     9541 cttaggatct ggtgcagcaa tgcgtgaagg ttcaagtcct ttcatccgca ccacttactt
     9601 ttatcatttt caaataagag ttgatttctc ataaattttt atttcatttt aaaatttctt
     9661 atgattgtta gataaaatgc aaatttaatt tagataaatt taaaaattat cttgcaaaag
     9721 atttgaaaaa taattcaaat atacaaaatt caattcaagg agataaaatg aaaaaattag
     9781 gtttagtttt agcagtttta gttgctttaa atgtgtcagc atttgcagat ttgatagtta
     9841 tcaataaaaa agatttagtt ccagtttcag caagcgaaat gcaaaacaaa tatttccaag
     9901 agagtataaa atcaacttta actgagccac tttttaaaaa ggcaactttt tatgaagcag
     9961 atattgttgc aaaagttgat ccaagaactt ataattcaac tcaagctata atacaaaaag
    10021 aatattcaga taaaagcaat tatgtttatt ataaacaagt tcttatatta actagtgatg
    10081 gtaaaagagc tagattatct actctttctt gcgaaattgc aagttttgat aagaaggggt
    10141 atttatgtgg aggcacagct gatcataatt attctattaa gtaaatattg caaataaaaa
    10201 tccgccttga gtttt
//
LOCUS       DARGEX010000057        10203 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.057, whole genome shotgun sequence.
ACCESSION   DARGEX010000057 DARGEX010000000
VERSION     DARGEX010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10203
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.057"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1042
                     /locus_tag="SF010_001160"
     CDS             <1..1042
                     /locus_tag="SF010_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8230089.1"
                     /translation="CESKCNYCAFTSLKKNDYEKAYFKALKEDIIFQLKQFNIQSNQI
                     KTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNMKNLGVN
                     RISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTKLDNKKMLE
                     FELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLELDFFQY
                     EISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYAAKNLKNYIENPTFRS
                     IEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKRYFNPNF
                     LISDELTLYLSS"
     gene            1101..1517
                     /gene="tatB"
                     /locus_tag="SF010_001161"
     CDS             1101..1517
                     /gene="tatB"
                     /locus_tag="SF010_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG8230090.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1510..2247
                     /gene="tatC"
                     /locus_tag="SF010_001162"
     CDS             1510..2247
                     /gene="tatC"
                     /locus_tag="SF010_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG8230091.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNIIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKVGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPVPKDKESNE"
     gene            2240..3268
                     /gene="queA"
                     /locus_tag="SF010_001163"
     CDS             2240..3268
                     /gene="queA"
                     /locus_tag="SF010_001163"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG8230092.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLHDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3257..4222)
                     /gene="lpxD"
                     /locus_tag="SF010_001164"
     CDS             complement(3257..4222)
                     /gene="lpxD"
                     /locus_tag="SF010_001164"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG8230093.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4219..4683)
                     /gene="ilvN"
                     /locus_tag="SF010_001165"
     CDS             complement(4219..4683)
                     /gene="ilvN"
                     /locus_tag="SF010_001165"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG8230094.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4680..6380)
                     /locus_tag="SF010_001166"
     CDS             complement(4680..6380)
                     /locus_tag="SF010_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG8230095.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6398..6841)
                     /locus_tag="SF010_001167"
     CDS             complement(6398..6841)
                     /locus_tag="SF010_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG8230096.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6853..7872)
                     /locus_tag="SF010_001168"
     CDS             complement(6853..7872)
                     /locus_tag="SF010_001168"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG8230097.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEACGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7965..8039
                     /locus_tag="SF010_001169"
     tRNA            7965..8039
                     /locus_tag="SF010_001169"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7997..7999,aa:Gln,seq:ttg)
     gene            8073..8148
                     /locus_tag="SF010_001170"
     tRNA            8073..8148
                     /locus_tag="SF010_001170"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8106..8108,aa:Met,seq:cat)
     gene            complement(8170..9042)
                     /locus_tag="SF010_001171"
     CDS             complement(8170..9042)
                     /locus_tag="SF010_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG8230098.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALEKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNCQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(9039..10106)
                     /locus_tag="SF010_001172"
     CDS             complement(9039..10106)
                     /locus_tag="SF010_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8230099.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNFLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECFYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIVVKYSKTLEYEIYAFAKKVLLKACMKDLSLYDLTYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQYHLGKSLTQFINYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
BASE COUNT         3374 a         1788 c         1406 g         3635 t
ORIGIN      
        1 ttgtgaaagc aaatgtaatt attgcgcttt tacaagttta aaaaaaaatg attatgaaaa
       61 agcctatttt aaggctttaa aagaagatat tatttttcaa ttaaaacaat ttaacattca
      121 atcaaatcaa attaaaacct tattcatagg cggaggaaca ccaagttgtg ttaatgcgta
      181 taattatgaa gatattttta aaattttata tcccttacta gataaaaatg tagaaatttc
      241 atgcgaagct aatcccaact cagcaacatt aaattggctt aaaaatatga aaaatctagg
      301 agttaatcgc atttcttttg gagttcaaag ttttcatcct aaaaaacttc actttcttgg
      361 aagaattcac aatcaagaaa tgattatcaa aacattagaa aacgcaaata aagtaggttt
      421 taaaaatatc aatttagatc ttatttatga tacgaaatta gacaataaaa aaatgcttga
      481 atttgaactc ttacacttaa aacaaatcaa ggatttaatc acacacctta gtgcttataa
      541 tttaaccata gaatcaaaca cagcctttgc taaaaaagaa catttcaaaa aaaatgctcc
      601 taatttaatg aaatttttca tcaaacaact tctagagctt gacttttttc aatatgaaat
      661 cagtaatttt tcaaaaacca aagcccaaat ttgcaaacat aatcttgctt attggcaagg
      721 aaaaaactac ctagcttgtg gattaagtgc ggtaggattt tatgaaaata aacgttttta
      781 tgcagcaaaa aatttaaaaa attacataga aaatcccact tttagatcta tagagcaact
      841 aagttccaaa gacttgaatt tagagcacct atttttagga cttagaagta tagtagggat
      901 tgatgaaaca aaactcaatc aatggcaaaa agacaaaata aatatattat taaaagaaaa
      961 aaaacttttt tacaaaaata aaagatattt taatcctaat tttctcatta gcgatgaact
     1021 tactttatat ctctcatctt aaatttaagt tttttaagta aaatatttat ttaaaatatc
     1081 aaatcaaaga gtaatgatta atgagttttg gtgaaattat agttatttta gttgtagcga
     1141 ttttagtctt aggacctgat aaacttccag aagctatagt acaaatagca aaaattctaa
     1201 aggctgtaaa acgcaacata gatgatgcaa aatcaagcat agaaaaagaa atacgcatca
     1261 atgacttaaa agaagaagct aagaaataca aagatgaatt ttcaagcact aatgaaaata
     1321 tacgcaaaaa actcagcttt gaagaatttg atgaccttaa gagagatatt ttagataaaa
     1381 caaaggtaga tttaaccttt gatagcagag atgataaagt aaaaaataac cttagcggac
     1441 aaaatttaaa tacagaagaa aaaccaaatc ttagcaaatt agaaacacaa gataaaaacg
     1501 gaaaaataaa tgtttgaaga attaagacct catttaatag aacttagaaa acgccttttt
     1561 ataagcgttg cttgcattgt agttatgttt attgtatgtt ttgctctacg aagctatatc
     1621 ttagatattc taaaagctcc acttatagct gttttaccag aagtagccaa acatgtaaat
     1681 ataattgaag tacaagaagc cttatttacc gcaatgaagg ttagtttttt tgcagccttt
     1741 atcttttctc tacctgtaat tttttggcaa ttttggaaat ttgtagctcc aggactttat
     1801 gataatgaaa aacgccttgt ggtgcctttt gttagctttg cgagcattat gtttgccttg
     1861 ggggcttgtt tttgctattt tgttgtagtg cctttggctt ttaaattttt gattaatttt
     1921 ggtttaaatg aagattttaa tcctgtaatt accataggaa cttatgtaga tttttttaca
     1981 aaagttgttg tggcttttgg cttagctttt gaaatgcctg taattgcctt tttctttgct
     2041 aaagtcggac ttatagatga tagtttttta aaacgccatt ttcgcatagc tgttttagtt
     2101 atttttgttt tttcagcctt tatgactcca cctgatgttt tatctcaatt tttaatggca
     2161 ggaccacttt gcggacttta tggactttct attttaattg ttcaaaaggt aaatcctgtc
     2221 ccaaaagata aagaaagtaa tgaataaaga cttacttctt tcaagctatg attacactct
     2281 agctaatgaa ctcatagcca actatcctac aaatccaaaa gaagatgcta ggcttttggt
     2341 ttttgatcgc aaaaacaaag aaatttttca cactactttt aaaaatttac acgacttttt
     2401 acccaactgc gcgatttttt tcaatgatac caaagttatt aaagcaagaa tttatggtaa
     2461 taaagcaagc ggaggaaaaa tagaactttt cttacatcaa ccttttttaa attctcacaa
     2521 tccacttttt ctagctcaaa ttaaagggcg cgttaaaaaa gatgaaatct tatattttaa
     2581 agaggattta aaagcgcgcg ttgtagaact tttaaatgat ggtcttcgaa aagttcaatt
     2641 ttttcaaaat gataaaacct tagacacctc aaatctttac aacctgcttg acaagatagg
     2701 acatataccc ttgcctcctt atattaaaag agaggatgaa aaaagtgatt tgaaagatta
     2761 tcaaagtatc tttgcaaaaa atttaggcgc agtggctgct ccgactgcaa gtttacattt
     2821 tagtgagact atgcttgaaa atttaagaaa aaaacacgaa atttatcatt taaccttgca
     2881 tgtaggagct ggaaccttta aaagcgtgga atgtgaaaat atacaagagc ataaaatgca
     2941 tagcgaattt tttaatattc cgcagcaagc atgtgaaatt atagattcta aacaagctat
     3001 tttaggcgta ggaacaacgg taacaagaac catagaatat tatacaagaa ctaaaacaaa
     3061 aaatggtttt tgtgatcttt ttttacaccc gcaaaatcca cctataagac aaaatcatct
     3121 tttaaccaat tttcatttac caaaatctac tcttatcatg ctagtttcag cttttatcgg
     3181 tagagaacag tgtttaaaac tttatgaact cgccataaaa gaaaaatatc gcttttactc
     3241 ttatggcgat gcgatgctaa tcttgtgatt tttctttaaa atttattgct attttagctt
     3301 gaagttttag ccaatctttt tgaagcatga taggaaaacc tccataaaca cgcccgcctt
     3361 ctaaattttt actcacaccg cctcttgcag ctatagtgct aaaatcgcct atttttaaat
     3421 gtccactcgt tgcactttga ccacccataa taacattgcg tcctaactca cttgaacctg
     3481 aaattccagt ttgcgccaca atgatacaat tttgacctat attgcaatta tgtccgattt
     3541 gaactagatt atctacctta gtacctgctt tgataatagt actatcaaaa actgctctat
     3601 ctatagttgt acaagccccc acttctacaa aatcttctaa aaccacgttg ccattatgat
     3661 aaattttata atgttcgccg tttttattgt gcgcataacc aaaaccgtca cttcctatta
     3721 cacaattagc aagcagatga cattttttac cgattttagt atcattataa atcactacat
     3781 taggatgaat aatactctca tcaccaatgc tgacattatc gcctatataa gctcctgcca
     3841 taatgattac attttcaccg atatttacat tatcacctat ataaacatta ggcatgattc
     3901 ttgcgctttt tgcgatattt tgtacttttt ctttagctgt gcttatcaaa ggtttagcaa
     3961 aaagcttgct taaaaaagca aaactcaaat gtggactttg agtaatcaaa gctttagtat
     4021 ctttaggtac taaattttca tattctttag atactaaaat agcagcagct cctgtgtgag
     4081 gtatatcttt ggtatttttc tcaccatcac aataagtaag ctctgtaaaa tttgctttca
     4141 ataaagaatt taaagcactg atttctatat cctcgccttt atattccaag cttaaaaatt
     4201 ctgctatttc acttaatttc atttaatctc catcaaaaca gatccactgc gaactatatc
     4261 actaggattg tattttttaa ttgtttttaa aaaattatca atgcgatttg catcatcagc
     4321 aaccattaaa aacaaaaaat tctcattgct atttgcaata gtaccattat aagctttcaa
     4381 aacggcatca agtccaccta aattttcatt taaaggaatt ttcaccaaag ccatttcttt
     4441 gtcaataaat tcttcacttt ctatcacttt ataagtagga atgagcttat gaagttgttt
     4501 gactatctgc tcaaaagttc tttcatttcc tgaggtgact atattaatac gagaaaattc
     4561 tttattttcc aaaggcgcta ctgtaagcga gtcaatatta taacctcttc ctgaaaaaag
     4621 tcctactata cgagataaaa ccccatgctc atttaaaaca attactgata aaacccttct
     4681 cattgtctat cctttgcctt tggtaaaatc atattataaa tcgcacctcc tgcaggcacc
     4741 ataggtaaaa catcttcaaa gcgatcaatt tttacattta aaagagaggt tttatcactt
     4801 tttaaagctt ggctaaaagc ttgaatgaat tcttctttgc ttgaaatttc ataaccttca
     4861 caaccaaaac cttgagcaat tttgataaaa tcaggctgag tgcttaaatc agtttgtgaa
     4921 aaatgctctt tataaaacat actttgccat tgtcttacca tacctaaaaa ggcattattt
     4981 aaaataatat ttatagtttt tataccatac tcataagcag tcataagctc ttggatattc
     5041 attaaaaccg atccatcacc tacgaaatta atcaccactt cttcacccac ggcaagcttt
     5101 gcacccaaag cagcaggtaa agaatatccc atagttcctt gccctccact tgttgcaagt
     5161 tgtcttggat aattaaaagg ataaaactgt gccacccaca tttgatgctg acccacatcg
     5221 gtaataatcc ttgcatctgg agccattttc gcacattctt caatcaccca ttgcggtttt
     5281 aaaatctcat tgctatcttc ataagaaagc ggataaagtt cattataacg ctttaaagtt
     5341 tcgtgccatt ctttaaaagt tgtgttgaaa ttttcctttt taagctcttc taaaagctct
     5401 ttaagaactt ctttaatatc tcctactata ggataatgcg cattgataat ctttgaaata
     5461 gaactaggat caatatcaac atgaactata gtcgcatgtt tagcaaattc acttgttttt
     5521 cctgtaatcc tatcatcaaa tctcgctcct acactcacaa gcaaatcaca ctcacttaaa
     5581 gccatattag cagcatagct tccatgcatg cctgccattt taagattaaa aacatcatca
     5641 cttcttaaag ttccaagcgc catcaaagtt tcaactgctg gaatttttgt aaattttata
     5701 agctctctga tttgctcgct tgcattagaa ctgatgcaac ctccacctaa gtaaaacaaa
     5761 ggtctttttg cttcttttaa aagctctgca aattttttaa tttgctttga gttaccctta
     5821 taaacgggct tataagtctt catggaaatt tctttagagt attcccaaag tcccaaagtt
     5881 gcacttacgt cttttggcac atctatatgc acaggcccag gtctaccact tcttgctata
     5941 taaaaagcct cttttaaaat gcgtggaaac tcttctatac aagtaactaa ataattatgc
     6001 tttacacaag gtcttgaaat gcctactgca tcaatttctt gaaaagcatc tgtaccaata
     6061 agagaatttg ccacctgccc tgaaatcaac accaaaggga tagaatcgct ataagccgta
     6121 gctagacctg taatagtatt tgtaaaacct ggtccgcttg taactatagc tacacccact
     6181 tctccgctca ttcttgcgta agcatcagca gcatgcaaag ccgcttgttc atgacgcact
     6241 aaaatatgtt taaaatactt ttgattgtaa atttcatcat aaatattaag cgcagcgcct
     6301 ccaggataac caaaaacaat tttaacattt tcttctttta aagcctcgca aatcattgcc
     6361 gaaccgctta actctttcat aataacactc caaaaaatta ttgtaaaagc tctttaagtg
     6421 ctaaattaag tcttttgcca tcaacactcg cacctaattt tattttagct tctttcatta
     6481 ccaaaccttg ttcttttagt gaacttacgc ccaattcttc tataagttgt tttaaggcta
     6541 aagttaactc ctcatcactt agttgtttag gcagataaat ttcaaaaaga cttatttcat
     6601 tttgttcttt ttgtgctaaa tcttcacgat ttgccttaag ataaagttcg attgcgtctt
     6661 tgcgtttttt gatttcactt gcaatgattt tataaattct ttcattatcc aactctattc
     6721 tttcatccac ttctatttgc ttaaaagctg catttagagt tcttaaacta tctcttttaa
     6781 aatcatcttt ttgtttcatt gcctctttga tatcgtttaa aatttgttct tttaaagtca
     6841 tttttttcct ttttagttaa aattacaagc tttaagattt aaaccaaaac cttctaagcc
     6901 tatatagtct ttatcacaac tttgagataa aagtttaatt tcttctatac caaaatatct
     6961 taaaatctgt gctcctatac catagttttt gtattgagta gtactggatt tttctccttg
     7021 catgaaaact ataacgccac cattttcact aagaaatttg atttgctcta aaagttttga
     7081 aaatttatct gaagttaaaa gctcaaaatc actaccactg atatgaaatt taacattttc
     7141 acattttttg atatctttaa agcaaaaagc tatgtgttgg gtttgattat gatcactaaa
     7201 gataaatttt tctgctttaa agcctgctaa aacactttga cttttttctt caagcttaat
     7261 aaggctttca tgttttaggc gatattctat aagatcgctt acggctatca tatttaaatc
     7321 atgtttttgg caaaaaattt ctagatcttc tcttcttgcc atatctccat tatcttttac
     7381 aatttcacaa atcacacaag caccttttaa tcctgctaat ttacaaagat caaccgtgcc
     7441 ttctgtatga cctgtgcgtt ctaaaacccc accttttttt gcgattaaag gattgatatg
     7501 tcctggtctt acaaaatcac tcgctttagc attatcatcg gcaaaaattt gtatagtcat
     7561 atttctttca taggcgctaa ctcccgttgt agcatctttt gcatctacgg ttatagtaaa
     7621 agcagtttcg tggtttgaag tatttttagg caccattaaa ggaagttcaa atttttttgc
     7681 caaagtttca tctaaggcta cacaaaccac accacaagct tcttttatca tgaaatttac
     7741 tttttcttga gtgctaaatt gcgcaggaaa gattaaatcg ccttcatttt ctctatcttc
     7801 tgcatctacc ataacaagca tttttcctgc ttgtaaatcc ttaatcgctt gttctacgct
     7861 aacaaatttc atttttattt cctcaaaatt tttaaaatta taacttaaat tgcttgacaa
     7921 ataaattaaa attcattata atcacacttt taaaaaatat ttattggggt atcgccaagc
     7981 ggtaaggcaa caggttttgg tcctgtcatt caggggttcg aatcccttta ccccatccac
     8041 ttcttatttt atatttcaaa gatcttatat gccgcgaagt agagcagtgg ttagctcgtc
     8101 gggctcataa cccgaaggtc gggagttcaa atctcccctt cgcaaccagt tatggattta
     8161 aaataaattt tatttagata gattgtttaa ataacttttt aaaatattct ccagccgtgt
     8221 tttcagttct ataggagcta gaatttttat ataggggatc cactgtttaa ccaaatgtaa
     8281 aatttcatct tcataggaaa cttgagtgct taaagtatag cttgtttcat cttcatcaat
     8341 gatttgacaa ttgcttagta tttcttttct aaaaaaatat tccttagcat ttttatcaag
     8401 ctttaaaatc acttctttgc tttctccaag ccagatatta ggatcatttt ggatttgttc
     8461 ctcaagtttt tcatcgggga taaaattttc atttttagtg tgaagttttg aaattttatc
     8521 taaattaaaa tgttttaatt tatcgttttc atcccctaaa agataccaaa ttcccttgta
     8581 atttacgagt ttgtaaggtt tgatttggcg ttctttttcc ttatagaaaa aatttaatac
     8641 attgtgtttg agtatagcca cactaagatc tttaaaaagc tcataatcca ccttttgaaa
     8701 accttcattt tttaccatca aaactttatt taccctatgg cttaaaagat caactataaa
     8761 gccttgatcg agttttggat aaagctcagc aatgccactt aaggtggcga aattctgtat
     8821 atctttaaag cttaattttt ccaaagcaaa gctttctaaa acatatcttc cattttcttt
     8881 tttaataggc ataaaagtaa gtctttcgtt aagatccctt tgtatggttc ttgtatcgac
     8941 attaaactct tgtgcaagct cttgggcgct tagactttcc ccattgttaa attttgataa
     9001 aatctgcacc aagcgtatgc ttaatttgtc gtattctttc atgaaatttc cttgtgggtt
     9061 aaaattcttt ttaacaaact tacgccttct atgcctaaaa tttcatttct aagttttttg
     9121 acttcattta aacttggggc ttttgcatga acggcttcat tacggatttc ttgaatgata
     9181 gtaagacttt ttgaaaaagg ataattgata aattgagtta aactttttcc taaatgatat
     9241 tggatatttt catgtctgag tagaaattta atacttccaa gattgggttt ttgggtaaaa
     9301 aaatctttaa gtataaaaga tttgccttgg acattataag ttaaatcata aaggctaaga
     9361 tctttcatac aagcttttaa aagaactttt ttggcaaaag cgtaaatttc atattctaag
     9421 gttttggagt atttgactac aatgcttgta aaatcattta aaagatcgtt ttcgctttgt
     9481 aaaagctcta attctgcatg aatgatattg cttatgctat cagggtgcaa gagataaaaa
     9541 atccttttgc caaaaacaaa gcgtatgaaa ttttcttgca tggctaggta ttctttgctt
     9601 ttatacacgc ttagataatg cttttcatct cctaaaaaat aaaaacactc ttcttttaat
     9661 ctcacaggca aaggataggt gtaattattg ccataaatgg cataggtgtg atcgtttggg
     9721 gtgatgaaat tggctaaaaa tttatctctt aaaagactaa aatcttccct gactaattct
     9781 cttaaatcac tgatgataaa aaagtcttcc acttctaaat ttttttcttt ataataacta
     9841 ggaatcaaac tttcatcgac atttttagaa atttttacca ccttagcgac aaataaatta
     9901 gcataatcgc ttaaaaaaag ttgcaagaaa ttttcttcat ttgtactttg gtaaatttct
     9961 tctaagaaat tttgcttttc ttgatcgttg agttttgatt tgattttgcc aaaggcaact
    10021 tgggattttt cttgtaaaat acttaaatgt tgcttgatga catcttcttg atagtaggga
    10081 ttataaagga ttaaaaggtg gttcatgctt tgccttattt taggatttct ttaaaaggct
    10141 tagatttatt atgagcttca attaataaaa ttttacaagt gtcatctaga tatttttcta
    10201 att
//
LOCUS       DARGEX010000058         9574 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.058, whole genome shotgun sequence.
ACCESSION   DARGEX010000058 DARGEX010000000
VERSION     DARGEX010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9574
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.058"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..506
                     /locus_tag="SF010_001173"
     CDS             <1..506
                     /locus_tag="SF010_001173"
                     /inference="COORDINATES: protein motif:HMM:NF019151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEG8230100.1"
                     /translation="RTNKLESSYNKIACNIFHSKYKNTKEIIDALKSIDIDDNDFKKS
                     FSIYSKKATSGNDAKIVKFLLVNIERHLSGGICDEQIATIEHILPSSLNNEKVHKLGN
                     YILLEKKYNQELKDKKFEEKISIYNKSSFKLPRYIADNFKTWDTKSIDQYQNFLAKQA
                     LALWKIQ"
     gene            503..1699
                     /locus_tag="SF010_001174"
     CDS             503..1699
                     /locus_tag="SF010_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8230101.1"
                     /translation="MTNLPQGWEVKKLEEIANIKGGKRLPKGENLLDNNTKFAYIRVA
                     DFQDNGTINLQNIKFINENTYNVLKNYKIYDDNLYISIAGTIGKSGIIPKELNGAILT
                     ENAVKLEYIQNNISNKFMYFFTLSNIFKTQIQTSTKIVAQPKLAITRLKQIQIPLPPL
                     KEQERIVGILDESFAKIDESIKILEQDLLNLDELMQSALQKAFNPLKDNAKENYKLPQ
                     SWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGYTDKATIIKP
                     SLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFIAKGEGSSIP
                     QLTIPKFKSLQIPLPPLKEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQSLLDK
                     AFKGEL"
     gene            1819..2889
                     /locus_tag="SF010_001175"
     CDS             1819..2889
                     /locus_tag="SF010_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEG8230102.1"
                     /translation="MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSMPNPS
                     ILINALILQEAKDSSEIENIITTHDELFLSRVDENKLTRAAKEVKDYESALKKGYELL
                     KKEQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNDIQELMGN
                     LELYINDDSLDEFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI
                     LYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAVKTIETIIKIEKMMSN
                     VGEILQNKTNFYSKDFVELLFSHPYAKIDFLIKKLDISRQSASKYLKICENLGVLECI
                     KMGRSNYYINIELLRLFRKGIF"
     gene            2890..4374
                     /locus_tag="SF010_001176"
     CDS             2890..4374
                     /locus_tag="SF010_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8230103.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK"
     gene            complement(4452..5207)
                     /locus_tag="SF010_001177"
     CDS             complement(4452..5207)
                     /locus_tag="SF010_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEG8230104.1"
                     /translation="MQLRQKAREIFEKLLGGAKKDQLFASDKEYFINHINFTFGESFI
                     KANLDTQKYFLIALASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFSR
                     VCDFLSLCNKVFEKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPE
                     DKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQ
                     SRKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(5314..5733)
                     /locus_tag="SF010_001178"
     CDS             complement(5314..5733)
                     /locus_tag="SF010_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8230105.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELASDEEYENALKEARG"
     gene            complement(5791..6966)
                     /locus_tag="SF010_001179"
     CDS             complement(5791..6966)
                     /locus_tag="SF010_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230106.1"
                     /translation="MKNLNKASNAQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCVSIFALVITFCSPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVGEFWQL
                     LILRAIPAFFHPIYIALALSMVTNLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
     gene            complement(7142..7237)
                     /locus_tag="SF010_001180"
                     /pseudo
     CDS             complement(7142..7237)
                     /locus_tag="SF010_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            7341..7664
                     /locus_tag="SF010_001181"
     CDS             7341..7664
                     /locus_tag="SF010_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEG8230107.1"
                     /translation="MQKFLTIISAINDESRILILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQETWAYYGINNELLKLHLDLFENIKNLELKNVIKKNENII
                     TQICP"
     gene            complement(7672..8103)
                     /locus_tag="SF010_001182"
     CDS             complement(7672..8103)
                     /locus_tag="SF010_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEG8230108.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLYKFKG"
     gene            8183..>9574
                     /locus_tag="SF010_001183"
     CDS             8183..>9574
                     /locus_tag="SF010_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8230109.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTILKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVANTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIFKAAYIQVIALIVMISISVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENAS
                     GSVELTTNALGDEI"
BASE COUNT         3674 a         1359 c         1349 g         3192 t
ORIGIN      
        1 ctagaacaaa taaattggaa tctagctata ataaaattgc ttgcaatata tttcatagca
       61 aatataaaaa taccaaggaa attatagatg cattaaaatc aattgatatt gatgataatg
      121 actttaaaaa atctttctct atatattcta aaaaagcaac ctcaggaaat gatgcaaaaa
      181 tagtcaaatt tttacttgtt aatattgaaa ggcatttatc tggaggcata tgtgatgaac
      241 aaattgcaac aatagagcat atacttccat catctttaaa taacgaaaaa gttcataaat
      301 taggaaacta tattttatta gaaaaaaaat acaatcaaga attaaaagat aaaaaattcg
      361 aagaaaaaat ttctatatat aacaagtcta gctttaaact accaagatat atagcggata
      421 attttaaaac ttgggacaca aaaagtattg atcaatatca aaatttttta gctaaacaag
      481 ccttggctct atggaaaata caatgacaaa tttaccacag ggttgggaag ttaaaaagct
      541 tgaagaaatt gcaaatatca aaggaggtaa aagacttccc aagggtgaaa atttattaga
      601 caataataca aaatttgctt atataagagt tgcggatttt caggacaatg ggactataaa
      661 tttacaaaat attaaattta tcaatgaaaa cacttacaat gttttaaaaa attataaaat
      721 ttatgatgat aatctatata ttagcattgc tggaactatt ggaaaaagcg gtattatccc
      781 caaagaatta aacggagcta ttctaacaga aaatgctgta aagctagaat atattcaaaa
      841 caatatttcc aataaattta tgtatttttt tacattatca aatatattta aaacacaaat
      901 acaaacttct acaaaaatag ttgctcaacc aaaattggca attacaagat taaaacaaat
      961 tcaaatccca ctaccgccgc tcaaagagca agaaaggata gtgggaattt tagatgagag
     1021 ttttgcaaag atagatgaga gtattaaaat tttagagcaa gatttgctaa atttagatga
     1081 gttaatgcaa agcgccttgc aaaaagcttt caatccatta aaagacaatg ctaaagaaaa
     1141 ctataaactc ccacaatctt gggaatggaa aagcttagaa gagattagcg aaaatatttc
     1201 tgcgggtgga gataagccaa aaaactgcac agaaagtaaa actgccaaaa atcaaatccc
     1261 tgtttatgca aatggtgtaa ataataatgg tttagttgga tatacagata aagctaccat
     1321 tataaaacct tctttaacta tatctgctag aggaacaata ggttttgttt gcattagaaa
     1381 agaaccttat tttcctattg taaggcttat ttctttaatt ccttgtgaaa atatattatg
     1441 cttacattat ttatattttt gtttgaattt ttttatagca aaaggtgaag gttctagtat
     1501 tccgcaactt actataccaa aatttaaatc cctacaaatc cccctacccc cactcaaaga
     1561 gcaagagcaa atcgcagagc atttagattt tgtctttgaa aaggcaaagg ctttaaaaga
     1621 gctttacact aaagaactaa aagattatga agagcttaag caatccttac ttgataaagc
     1681 ttttaaggga gaattataat gttaaaaaat ttgccaaatt ttaacacatt ggcttgatat
     1741 gttaaaaatt tttgattttt ttaacatatt tttttataat gttaaaattt ttagaaaaaa
     1801 ttaacatatt ggaaaattat gaaagaattt atacctcaaa aattgccttt aaatatagaa
     1861 ttaaatgcaa atatttatag tcttatcatt aaagcttcta gaaaattagc agagttaaat
     1921 ggacttagta aaagtatgcc aaatccaagt attttaatca atgctttgat tttacaagaa
     1981 gcaaaagatt cgagtgagat agaaaatatc atcacaacac atgatgaact ttttttatca
     2041 cgagttgatg aaaacaaact cacaagagca gcaaaagaag tgaaagatta tgaaagtgct
     2101 ttaaaaaagg ggtatgagct tttaaaaaaa gagcaattat taagaaacgc acatatttta
     2161 gaaattcaaa aaagattaga aagaaataat gcaggtttta gaaaacaaag tggaactatg
     2221 cttaaaaatc ctattacagg agaaatcaaa cacataccac cccaaaatcc taatgatata
     2281 caagaactta tgggaaattt agaactatac attaacgatg atagtttaga tgaatttgat
     2341 tttttagtaa agatggcaat tatacattat caatttgaaa gcattcatcc tttttatgat
     2401 ggcaatggca gaacgggtag gattataaat atactttatt tagtatataa aggacttttg
     2461 gattttccta ttttatatct tagtgcttac atagtaaaaa ataaagatga gtattataag
     2521 cttttgcaaa aagtgcgtga tgaaggggat attttaaagt ggatagaata catacttaaa
     2581 ggcatagagc aaaccgctgt aaagactatt gaaactatta ttaagataga aaaaatgatg
     2641 tctaatgtag gtgaaatttt acaaaataaa acgaattttt atagtaaaga ttttgtggag
     2701 cttttgtttt ctcatcctta tgcaaagata gattttttaa taaaaaaatt agacatttca
     2761 agacaaagtg cttcaaaata tcttaaaatt tgtgaaaatt taggggtatt agagtgtatt
     2821 aaaatgggta gaagtaatta ttatataaat atagaacttt taagactttt tagaaaagga
     2881 attttttaaa tgcaaaataa aatcgataaa atcacagata ttctaagaag agatgatggc
     2941 ataagtggtg ctatgcacta tacagagcag attggctgga tacttttttt aaaattttta
     3001 gatgattatg agacaaattt aaaagattta gcgtttttag atggcaaaga ttataaaagc
     3061 attttgcaag aaaaatttag ctggagtgtt tgggcagcgc ctaaaaaaga tggcaaactt
     3121 gatgtaaaaa atgctttaag tggatcagat ttgcttgaat tcgtaaataa agagcttttt
     3181 ccttatctta aaaattttaa aaataatgat gattttaaaa gtatagagta taaaatcggt
     3241 ggaatttttg aatttataga caatcgcata gcaaatggac atactttaag agaagtgata
     3301 aatatcattg atgagattag ttttaataaa gaagatgaag tatttgcctt aggtgaagtt
     3361 tatgaaaaac ttctaaaaga tatgggtagc gatggtggaa atagtggaga attttacacc
     3421 cctcgtcctt tgataaagac tatggtggaa gtaatagatc ctaaaccaaa agaaagaatt
     3481 tatgatcctt cttgtggtag ttgtggattt ttagttgaga gttttttaca tattttatat
     3541 aaagacagaa ccaaaggcaa aaaagcaaat ttaagcgtag aagagcttga atttttaaaa
     3601 aatgatgctc tttttggtaa agaaaaaact ccgcttagct atgcaatggg cgttatgaat
     3661 atgatacttc atgaaatttc aagtccaaat atcataaaaa caaatacttt aagtaaaaaa
     3721 ataacagata taacagaaaa agataaatac gaagtaatac ttgcaaatcc accttttggt
     3781 ggcaaagaaa aagaacaaat tcaagaaaat tttcctataa aatcaaatgc tactgaactt
     3841 ttatttttac agcacatttt aaaatcttta aaaaacaacg gaagatgtgc gatcattgtg
     3901 cctgaaggtg tgctttttca aaattcaaat gcctttgtga gtgtaaaaaa agatttacta
     3961 gatgatttta atttagaatg cgttttgagt ttgccaagtg gggtattttt gccttatagt
     4021 gctgttaaga ctaatgtgct ttttttctct aaaggtaaaa aatgtatttg tgaaggcgat
     4081 ggagtttatt actacgaact tataccgcct tataaactta ctaaaaataa gcctttagaa
     4141 tacgcacatt ttaaagaatt tctaaaatgc tacaaagaaa gaaaaatcac tgctaattct
     4201 tggcttgtta gcaaaaaaga gcttgaagaa agaaactatg atctaagtgc taaaaatcca
     4261 aatgtaaaag aagaaaaaat cctaagaact agcgaagaga ttttaaattc tttagaagaa
     4321 aatctaaaaa cacaacaaaa atatttaaat gagcttaaaa gcatactaaa atgattgcaa
     4381 gttttttgat aaaaactaat ttacaaataa cttctaagct caatttacaa taaatattta
     4441 ttgcttgcat tctacttttt aatatcatca agcaaattta gggcatttaa agcttttgga
     4501 taaccgatat atggaataag agctgcaatg atatttagca aatcttttct actttgcccc
     4561 atgttaagat tgccttgtat gtgagctttt acttgattgt ctagcccacc aagtgagata
     4621 agatatacaa gggttaaaag ctctctagtt tttagatcaa gtcccatgcg tgtatagtag
     4681 tctccaaaac aattcgcact caaaaaatca tttataaaag ctttatcttc tggtgtagtt
     4741 tctatcattt tagtgatatt ggcttcacta aaaatagcat tttgtatttc cctgcctttt
     4801 attttgcgat tttcttgcgt agtagtgcct tgtggagtta aaactaaggc gatatttagt
     4861 ttttcaaata ctttattaca aagacttaaa aaatcacata ctctagaaaa acccacataa
     4921 ggcgtagctt gataaatcac ttctttaatg acaataggac ttatatcgtt cttgattgca
     4981 ccttgaagta aagctttaaa ctctattttt ccacctactg ctaaagtaga agcaagggcg
     5041 attaaaaaat atttttgtgt atccaaattt gcttttataa aactctcgcc aaaagtaaaa
     5101 tttatgtgat tgataaaata ctccttatca cttgcaaaaa gttgatcctt ttttgctcct
     5161 cctaagagtt tttcaaaaat ttctcttgct ttttgtctta attgcatggt tttatccttt
     5221 gtggttttta aaatttgtga aaaaagagca tttaaaatac tccaaaaaca taaaagtttt
     5281 tataaaattt ttgtgtttta tttacaaatt tctttatcct cttgcttctt ttaaggcatt
     5341 ttcatattct tcatcgcttg caagctcaag ccattctaca tttttacctt ctttttcgcc
     5401 tgtaagtgct atgtgtgctc cactacttgt attagttgca ccatgaaaat gctttactcc
     5461 tataggacag cttatcacat cgcctttttt agctataaag gctttttgcc ctggaacttt
     5521 tgtgatgatt tcaccctctg ttacgattaa ggtttgtcct tgaggatgag tatgccacgc
     5581 acttctagca ctggcttcaa attcaaccaa agccccgcta aaatttctcc actcatttga
     5641 tttaaacatc atagaaactt ttacattttt gctaaaaaat ttactatcac ctttaaaact
     5701 tccatgaatt cctgcttttt ctaattcttg tattttacct ccttttttag tattataaaa
     5761 catgagagct actctaagtc aagtaaaaat ttaaaatctt aatttcattt tttctatcct
     5821 acttcttaca aaaatcatga taattcctaa aatcaacaaa acaatagtat ttacgataat
     5881 ataacgcgta tcactcaaag aaatcacaag tccacaaata gcagttccgg tgcttaatcc
     5941 tatattggcc acgcttataa aaagtccatt gctaaaatta gcagcctttg gaaagggata
     6001 acttatcata aaatgcgtgc cgttattcat cacacctgct aaaattccta atataaaggc
     6061 aaatattata agtataattt cactataaaa actaaaaagt aaaatataaa atcctatcat
     6121 aattaaaggt gttaaaatca aagtaaaatt tgcgttttta acaagggtct ttccggctat
     6181 ataattgcct ataatatttg aaaaaccata aatagccaat acaatactaa ttaaagtaaa
     6241 attcatcttt cctacactat gtaagaaatc agaaaaataa gagtaaaaac cccaaattcc
     6301 agcgtttata caaataacac aaagtatgct aatccataaa agcgggtatc ttaaaataag
     6361 caattgtttg cttattttta cagaatttac ttttttaaaa tcaggaacaa aaaataaagt
     6421 tgctataaaa gataaggtat ttaaaaatac aaaaaataac attgccattt taaaactaaa
     6481 atttccacca aaataactag tcataggtac acccaaaacc attccagcac taactgctgc
     6541 aaaaatctta gctgtagctt ttggaatttc tttcttatct tcgaccaaat ttgtaaccat
     6601 acttagagca agagctatat aaataggatg aaaaaaagca ggaatagctc ttaaaataag
     6661 caattgccaa aattcaccca caaaagcgga agttaacgag cttaagataa acacagctaa
     6721 acaaataagc ataagttttt taggattgaa atttgcacaa agtagcggga caatagggga
     6781 gcaaaaagtt atcacgagtg caaaaatact cacacaccaa cccgcatctg aaatacttac
     6841 actgaaattt tgagaaacaa taggaattat acccatcatc cctagttctg tgctcaaaat
     6901 cccaaatacc cctaaacaaa atactagaat aatttgagca tttgaagctt tatttaaatt
     6961 tttcatttta tcctttcaat taatattttt aaaagtataa aagatgagag taggtctaag
     7021 tcaataacct aaaataaaaa tatttatcta tattaaataa aatctttaga aaaatttgaa
     7081 acttcaaaat aagcatttaa aagaaataaa agatgcctta aaagcataag gcatctttta
     7141 tttataggct tattacccca atgagtgtgt tttcatagca agaattaagc actatgtcta
     7201 tcatagcact agcataatca ctgtagctga ttttactcaa acaaatgttt aaaataaaat
     7261 ttttattttt attggttatg attattttag gcgtggctat atcttttgga atttttatta
     7321 atttaattta aggaaataaa atgcaaaaat ttttaaccat tatttcagca atcaatgatg
     7381 aaagtaggat tttgatttta catcatcttt taagatacaa agaactttgt gtttgtgatc
     7441 tacaagagct cttaaacatg ggtcaatcaa gactttcaag acatttaaaa attttaaaag
     7501 atgcaggttt tttgtatgta aggcgtcaag aaacttgggc gtattatggg attaataatg
     7561 agcttttaaa gctgcattta gatctttttg aaaatatcaa aaatttagag cttaaaaatg
     7621 ttattaaaaa aaatgaaaat attattaccc aaatttgccc ttaatataaa atcaaccctt
     7681 aaacttatac aatttatcac aaggttgata gtccttgctt tctggattaa acccatcgac
     7741 ttcatttgca agcatttctt cataaatttt tatctttttg cttaaaactt tttcactttc
     7801 ttttaatgtt ttaatctggt tttgtaattt tttctttgtt tgctttaaca tctcttgtct
     7861 ttctttagca gtttttatac ccaaagagca aagttttata taatgtttga tttgttctat
     7921 tggcatacct gaaattctaa gccattctat ccattttacc cattctatat cgctttttga
     7981 aaaatatttc acactatttt catctttttg aacaaaagga aacaaacctt ttttagccca
     8041 aaatcttaaa gtatgagcac taatttttgt ttctttttct acttttttta tagtataagc
     8101 catattttct cctttattta agataaaaat aaaaatttat tttatttttt tgtgataaaa
     8161 taatagccaa attattagtt ttatgctaaa aataacaaag attaaaagga aaataatgaa
     8221 tagtattaaa atcaaacttt ccctcattgc aaatttaatt gcaatttttg ccttaattgt
     8281 tctaggtatt gtaagttttt attttacaaa aacctcacta tatgaaagca ctcttaaaaa
     8341 tcaaactgat ctacttaaag tcacacaatc taccgttgaa gatttccgtt ccacaaatca
     8401 atcttttact agagctttag aaaaagatat cgcgaactta ccttatcaat ctttaatcac
     8461 tgaagaaaat attattaaca atgttggtcc aatattgaaa tattatcgtc atagtataaa
     8521 tgcactaaat gtttatttag gtttaaacaa tggaaaagtt ttacttagtc aaaaatctaa
     8581 tgatgcaaaa atgcctgaat tacgtgatga tttagatata aagacaaaag attggtatca
     8641 agaagcttta aaaacaaatg atatttttgt tacaccagca tatttagata caattttaaa
     8701 acaatatgta ataacgtatt ctaaagctat ttataaagat ggcaaaatca taggagtact
     8761 gggtgtcgat ataccatcag aagatttgca aaatttagtt gcaaacactc ctggaaatac
     8821 ttttttattt gatcaaaaaa ataaaatatt tgcagcaacc aataaagaat tattaaatcc
     8881 atccattgat cattctcctg ttctaaatgc atataaactc aatggtgata acaacttctt
     8941 ctcttataag ttaaataatg aagaaagact tggagcttgt actaaagtct ttgcttatac
     9001 agcttgtatt accgaaagcg ctgatattat aaataaacct atatttaaag cagcatatat
     9061 acaagttata gccttaattg ttatgatatc tattagcgtc atcctccttt atttcatcgt
     9121 atcaaaatac ctctccccac ttgcagctat ccaaacaggt ttaacttcat tctttgattt
     9181 tatcaactat aaaacaaaaa atgtttctac tatagaagta aaaagcaatg atgaatttgg
     9241 acaaatctca aatgctatca atgaaaacat tcttgctact aaaagaggct tagaacaaga
     9301 caatcaagcc gttaaagaat cagttcaaac cgtatcagtt gtagaaggtg gtaatttaac
     9361 agcaagaatt actgctaatc caagaaaccc acaacttatt gaacttaaaa atgttctaaa
     9421 taaacttctt gatgttttac aagctagagt aggttctgat atgaatgcta ttcataaaat
     9481 ttttgaagaa tacaaaagct tagactttag aaataaatta gaaaatgcta gcggtagtgt
     9541 agaattaact actaatgctt taggtgatga aata
//
LOCUS       DARGEX010000059         9450 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.059, whole genome shotgun sequence.
ACCESSION   DARGEX010000059 DARGEX010000000
VERSION     DARGEX010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.059"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(62..671)
                     /locus_tag="SF010_001184"
                     /pseudo
     CDS             complement(62..671)
                     /locus_tag="SF010_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870510.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(673..1260)
                     /gene="pglD"
                     /locus_tag="SF010_001185"
     CDS             complement(673..1260)
                     /gene="pglD"
                     /locus_tag="SF010_001185"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG8230110.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECVFLDDLKGMKFES
                     TLPKYDIFIAIGNNEIRKKIYQKILENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFIGIPAKRM"
     gene            complement(1247..1849)
                     /gene="pglC"
                     /locus_tag="SF010_001186"
     CDS             complement(1247..1849)
                     /gene="pglC"
                     /locus_tag="SF010_001186"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG8230111.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTGKFNGKN"
     gene            complement(1842..2972)
                     /gene="pglA"
                     /locus_tag="SF010_001187"
     CDS             complement(1842..2972)
                     /gene="pglA"
                     /locus_tag="SF010_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8230112.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            complement(2982..5123)
                     /gene="pglB"
                     /locus_tag="SF010_001188"
     CDS             complement(2982..5123)
                     /gene="pglB"
                     /locus_tag="SF010_001188"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8230113.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSVIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            complement(5127..6224)
                     /gene="pglJ"
                     /locus_tag="SF010_001189"
     CDS             complement(5127..6224)
                     /gene="pglJ"
                     /locus_tag="SF010_001189"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8230114.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            complement(6212..7141)
                     /gene="pglI"
                     /locus_tag="SF010_001190"
     CDS             complement(6212..7141)
                     /gene="pglI"
                     /locus_tag="SF010_001190"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG8230115.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            complement(7134..8213)
                     /gene="pglH"
                     /locus_tag="SF010_001191"
     CDS             complement(7134..8213)
                     /gene="pglH"
                     /locus_tag="SF010_001191"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG8230116.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVERV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVDCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            complement(8210..>9450)
                     /gene="pglK"
                     /locus_tag="SF010_001192"
     CDS             complement(8210..>9450)
                     /gene="pglK"
                     /locus_tag="SF010_001192"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8230117.1"
                     /translation="LMSEIFVVLLLYALMLLINYKITLFLSIFMVLNAFILVKILSPI
                     IKKAGVRREEAMKNFFEILNTNLNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNES
                     VAAVPRIYLEGIGFCVLVFIVVFLVLKNESDISGILSTISIFVLALYRLMPSANRIIT
                     SYHDLLYYHSSLDIIYQNLRQEEENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNL
                     NIKKGEKIAFIGESGCGKSTLVDLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYI
                     PQNIYLFNDSIAKNITFGDAVDEEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLS
                     GGQKQRIAIARALYLEPEMLVLDEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLS
                     TITQCDKVYRLEHGKLKEEK"
BASE COUNT         3411 a         1750 c         1029 g         3260 t
ORIGIN      
        1 attgactcta ttttacctaa aaaaatttac aaagattcaa atatttaaat tctttttata
       61 gtcaaagctt gttttcatac caatttttaa gcttttctaa gtcttctttt ttataaatac
      121 tttcaaagca tttaaggagt attttatttt ttgttttgat aacaaaacaa acttcaactt
      181 gatttaaaaa tttcattttt tctattttaa caatttctaa atcttctcgt tttataaaat
      241 acatataaaa aagattaaat ttactaacta taataaattc cattttcaca aactattgct
      301 aaatttataa catatatcaa caataataac atacctgtta tcacagaaga aactgatact
      361 tgcaaactcc aaagtgtttt taaattttca ttttctaatt caaagaaaaa aagaagttga
      421 taaaaacctt caaaattata ccaaattcct attaatccac ccaaaaaagc agcaatacct
      481 gtatatttta taatcctact atttttagaa tttacatttg ctttaagact aaaaagtttt
      541 ttgtgtttta aagaattttt caaaggaaat atgtagcata ttagacatat ggttagtaaa
      601 ttaatgacaa tccaccccaa aggcgaagga tttactatat agtgaacaac aagattgtta
      661 ttaaaatgca atttacatcc tttttgcagg tattcctata aaaacacctt tttcatcttg
      721 atttttaact aaagttgctc caccacctaa aatactatca tctgctaagc ttaaattagg
      781 caaaacacaa gaattaatcc ctaaaaaaca atttttacca atttttacat tacctgcgca
      841 tttagcccct acactcacat gagaaaattc ccctatcaca cattcatgtt caatcacact
      901 tgaagtattc aaaatcacgc ctttttctat tttggcttta gcattaatta ccacgtaagg
      961 catgattaaa attcctgcat tttcttctat acttgcacta ggacttataa gtgcgctttt
     1021 atggataaga ttaacgattt taaagccatt ttctaaaatt ttttgataaa tcttttttcg
     1081 aatttcattg tttcctatgg ctataaaaat atcatatttt ggcaaggtgc tttcaaattt
     1141 cattccttta agatcatcta aaaaaacaca ttctttataa cccatatttt tagccacatc
     1201 ttcacaaaca agcccatgac cactagcacc ataaatataa attttttcag ttcttgccat
     1261 taaatttccc cgttgtaaca tgtccttctt tgcttacccc acttcgtttt aaaaccttta
     1321 aggctgttaa aaacatgatt tttaaatcaa gtaaaaaaga aatatttttc acataataca
     1381 catcaagttc aaattttttc tgccaagaaa tagcatttct accatttacc tgcgcccatc
     1441 ctgttatacc tggacgcact ttatgacgca atttttgctc tttattgtaa agaggcaaat
     1501 actcaaccaa aagaggccta ggtcccacaa aactcatatc cccttttaaa acattaaaaa
     1561 gttgcaaaag ctcatccaaa cttaagcttc taacgatttt tccaaaagct ttcaaacgca
     1621 attcatcact taataactca cccttttcat ctctttcatc gctcatggtt ttaaatttat
     1681 aaattttaaa aattttttca tctaacccgg gacgattttg ggtaaaaatc acacttcctt
     1741 gagtgatttt taaaagtaaa gcagtgatta aaatcaccgg agaaaaaagc actaaaagta
     1801 ctaaagctaa aataaaatca aaaattcttt taaaaacttt ttcatacatt cttaattacc
     1861 ctatcataaa gttttaaata acgctgtgcg atattatttt catcgtattg taaagcatct
     1921 tgggcggcat ttttagctaa atttaatctt aatttttcat cttctaataa aagtgaaatt
     1981 ttttcgctta aatccttagc attttttgtt tttgcccaaa gtccatcata agcattagaa
     2041 atagcctcta cacaaccttc acaatcgctc accactatag ccttaccaca agcttttgcc
     2101 tccaaaacac ttacaggaaa gccttcttta tagcttggca aaacaaaaat atcacaattt
     2161 tgcaaaagtt ctacgatatc acttctagca cccaaataat gcactgcgcc agagtttaaa
     2221 aactccaaac tcgcacaaga aggattttca tctcttccac caactaaaac aaaatttgct
     2281 ttgtctttta gcatagtagc actttcataa aattctttta cacctttatg ccataaagct
     2341 cttgctatca taagtacaat gggtttttta tctatgttta aatttttcca aaaaagctct
     2401 tttttttccg attctacata aataggaaaa aattttttta aattgatccc tacagatttt
     2461 atcacgcaaa ttttattttc tttaagtcct aaattccgca taaactcagc attactttca
     2521 ttgacaaaaa taaattggtg tgcaaattta aaacttaatt tataaagact attaataaca
     2581 aaacgcacta aatttgcctt aaaaccttga tctatataaa aagatcccaa gccttctact
     2641 aaggcaaaac gataaggaat ttttgcccat tttgctgcta aaattccaaa agtattgctt
     2701 ttgtgtgccg cactttgaat aaaatcaaga tttaaatttt tcaaaacctt agcaagataa
     2761 aaaaaattct ttaaaaccac aaaaggattt aaactagctc ttgaaaactc ataaacaatt
     2821 acttttaagc caagatctct aagtttttgc gtgtattcat cttgcggcac tataacaaaa
     2881 acttcgtctt ttctatcttt taacgctttt ataataggca ttctaaaatg ataaatactc
     2941 gctcctgcat gtgataaaaa tcctattctc attttcaacc cttaaatttt aagtttaaaa
     3001 actttagcat ctctagaatt aatcaccaag tcaaataaat tcttatcata atttcccaaa
     3061 aaaaacattt gcacataagc actattaaac atggttttat ccattaaaat aaattgtgcg
     3121 taaggaatag cactatcctt taaataaaaa atataaaact gagccttatc atcaattgga
     3181 gtgattttgt attcaccttg tttaatagaa ttaatctcta cgatactatt tacagaaacc
     3241 acattatcgc ctattttaaa acttctaaaa tcatcgctta aaaccactcc gttgctaaga
     3301 taaatttctc catttttaac atcaagtgga taagctgtgc taaaggtaaa aggtttatcc
     3361 aaaactcctg tatctaaatt aataaaagaa aaactagcca ccgtagaaaa aatcaaagac
     3421 attctagcgg gcatataaag ataaatatca cgagtttttg gtgtatcgat tttaaaatca
     3481 ggttttgata atgaagctag aaataaatcc acattgcttt gattataatc tttcatcatg
     3541 gcttgtaaaa tgtctgattt taaaatatca ttttgcggag cataaaagct tttttctgta
     3601 tattctacac taagtcttgc catattagct gcagcttgtt catctttact taaagaaaaa
     3661 gaagggaaaa aattatcctt acctaaatgc tttccaccat ctactaaagt tttcacatcg
     3721 ctataataac gcacaggata accataatcc caccaagtta ccacataatc ttctctattg
     3781 gctatatttt ttaattgatt taataatgat gcttcatttt gagaaaaaac tgttggcgct
     3841 ttatagttgt aaatatggat aaatactgga gccaaagtca aaatagttgc aaaaacaata
     3901 caaacatttg aagttaattg gctatatttt ttaaccaata tagccttaaa ctcgctcaat
     3961 aaaaaaccaa atcctaaagc cattacaggt acagaataaa tggtaaatct aagtcctcct
     4021 tttaaggcta aaaacccaag caccaatata ggtaaagcca taatcatact tttatgtttt
     4081 ctcaaaagcc atacaaaacc aaacaaagaa aacaagaaaa caatttcact accactaatt
     4141 cttcgcataa attcgctaaa atctacattt tcaacttctt gtatggtttg attaacatta
     4201 aaatacataa agccctgtgt taaattcgca ctttcatcac ttctaaaaat ataaaattta
     4261 agctgataaa gtatgggatc aaccccaccg cttaaaatca aaaatatcaa agttgcacta
     4321 cctaaaattc ctataatcat aaaatttaag cgtttttgct ctaaagcaaa taaagcaaaa
     4381 agtattacta taatgacact ttgataaaac catgctatat ttgaaagagt aagagaagac
     4441 aaaatcacag ctatataaaa aatcttttct tttctatgaa aaataagtgt ataaattaaa
     4501 aaaagtccaa ttaaagctac atttaaagta taacttgaag gataccacca aagataaatt
     4561 cctataaata atggcaaggc aatcaatgaa aaaaagtctt tttttaaaat cattcttacc
     4621 ataaaaaata aaataaacat aggtaaaaca attaccagca tatccgtatc ataataccca
     4681 ctcatagtgc gattataata actgtttgct acacttgcta aaagagcagc tacaaagccc
     4741 attaaagggc gtttgtattc attagctagt aaaataatag gaatcaccac caaagaagat
     4801 aaaaaagtac tcatatataa aatgatactt tcaaaagaaa aaggtgtgat tttataaagc
     4861 caataagtaa gagtagataa agaagatcca taataactca aatcattagg ctgatgaaaa
     4921 cctgctatca tatctcttgc gccctcagca aaagcatagc catcgtttga aatgatcatt
     4981 aattgattat tgaaaaaata ctcgttaaac tcacttgccc accaaaccca ataaaacctg
     5041 caaaatacac taaaaacata agctaataca atcatcgcaa acaaaactaa ataagggttt
     5101 tttaaatact cttttttcaa catcttttat cctaataaat atttcaaagc atcgcgtgca
     5161 atttttactt tatcaaaggc tttagcccta gttttagctt tgtttttata cgcttttctt
     5221 aatttatcgt cttcaagcat agtttttaaa ccctgaaaca tagagttttc attatctact
     5281 tctactaaaa gtccaaattc atcatcgcca aaaagctctc ttgcaccact tttatgatca
     5341 gtgcaaacca ccgcacaaga acaagccaaa ctttcgatta aaacatttga aaaaccttca
     5401 aacacagaag caaaagcaaa aaattcgcat ttagccatgt atttataagg attattatca
     5461 aatcctaaaa gcaaaacctt ttcttccaaa tttaattctt taatcaaagc taaaagctca
     5521 tccttaagca caccttcacc taaaatcaca agctttaaat ctgttttcaa tctcgcataa
     5581 gcacgaatta ataaagcatg atttttacct ttatcaagcc tgcctacact taaaataaat
     5641 ttatctttta aagctatgtc ttcaagggct ttttgcccta tgttttctaa atcgatggca
     5701 ttgtataaaa tttcacattt ttttggactt atactaaaat tttgcactaa atcttctaaa
     5761 tttcccttag aattaggcaa gattaaatca gcttttgggt aaagcaaaga aattaaaaat
     5821 ttatttacca aagaattaaa attatttttc atatacatca cacttggcgt agtgcattca
     5881 ttgatcacaa ggcgagtttt gtttccaaac attcttgcca ttaaagctat ataattaggt
     5941 cgatttaaaa aaacaaattc tgtatcaata cctaaatttc tgcaaagttt tttgtatttt
     6001 aaagccaaaa aaggtagttt taaaaatttc aaaataggat tttcactagg ttttgaacat
     6061 tctaaaaaat gaatttgaca ctctggaatt tcataagaaa ttttatcatt catcaagatc
     6121 aaatgcactt caaatttcaa acttaaaata ggcaataaag tcgccacaac tctttcagca
     6181 ccaccacttc ctaaagaata aataaaaatg cctaattttt gcataaagcc acccgaattt
     6241 ttgataattt ttcaatcata ttatttggaa ttatacttaa aatgagtaat atcaaagcag
     6301 gagcgttgat ttttatactt aggcttttaa acaaacattt ataaagggct ttataatttt
     6361 ttgcaagttt tgcataataa gctgccattt tataataact cgcacaagtt tttttataat
     6421 ctttatcctt actcattcta agttcatttt ctaaaatttt agcaagctct aaatatccca
     6481 aatacaccct ataagcattt ttactcgccc ctaaagtcac gctatcttgc ctaaaaattc
     6541 tataaatcct aaaagcctta tggatataaa aacttttttc tttgtataaa tttacccaaa
     6601 gcgtggcttc attgccataa aattcttcat taaaacgctt attttcaagt agggattttt
     6661 taaaaacaga aaaaaactct ccgctaaatt tagccattaa aaaatctttt ttagaaattt
     6721 cactatcttt ttccaagccc ttgccgctaa attccttgct taaatttcct tctttttcta
     6781 tcaaacaatt tccaaaaaca tgagcataac cctcatttgc tttttgcatc aaggtactta
     6841 aagccccgga taaaagctca tcatcatcat ctaaaaaagt tacaaactcg ccacttgctt
     6901 gatctaagcc attgttttta ttgccatttg gaccttgttt gtaattttga tttaaaaaat
     6961 acttaatgcg atcatcatct ttttgtaaat tttgcaccac acttttagta tcatcgctag
     7021 aattatcatc gcttacaata atttctaaat ctttaaaatc ttgattttgt atgcttttaa
     7081 tagccttttc taacaaaact tgacgattaa aagttggtac tataacagaa agtttaggca
     7141 tttttaacct cggctataag cttaagccat tcttctttga tatgagaaat ttcaaagtct
     7201 ttacaccttt gtttggcatt atttacaagt tcttttctaa aattttcatc atttaaaaca
     7261 agttcaagtt ttttagcaag tgctatttca tcatcacaat ctaccaaaag cccatcatga
     7321 ttatctttga ttaaatcctt agcaccatta taataagaac ttgaaattct acaaacctca
     7381 aaatacaaac tttcaattaa aaccgttggc aaaccctcta caaaagaaca aaggcaaagc
     7441 acttttgctt tttcataaag agccttgaca ttttcaacgc gtcctaaaaa atcaactttt
     7501 attcctaaag attttacctt gtattcaagt tcttgtctta actgtccatc tcctgctata
     7561 acaaatttat aattttcttg taaattttta tccaaatgcg ctatagcttt taaaaacatt
     7621 acagggtttt tgttgtgatc taaacgccct ataaaaagaa ccaaattttc cttttcaaaa
     7681 ctagaatcaa aagaaatttc atcgctaaaa tgacaagggt ttaataaaag cttaaccctt
     7741 tctacaaatc tttcataata caccttatca ctgcttccaa gcacacttaa agcatcacaa
     7801 aaaggatagc ttacccttct taaaaaacgc caaattttag gttttaaata cgcttcatta
     7861 ctatgctcac ttataatgag tggagtttta agccctattt tcgcagcaat acaagcaata
     7921 ttagtcgtat ccaaaaaaga aataaaaaca tcagccttac tttctttcaa agcctttctt
     7981 aaagcaaaaa atttcttaaa acgacttgcg attttatgat aaagcgtgtc aaatctaaat
     8041 tgttccaaac ttgtaacttt aacttcattt tcaagcttat aaaaagattc tcctgcatga
     8101 aatttaataa tacttacttc atgctctttg caaagtgcat tagctaaggt tactaaagca
     8161 cgctcagcac ctcctgaatt taaagttgcg ataataaagc ttattttcat catttctcct
     8221 ctttaagctt accgtgttct aaacgataaa ccttatcaca ttgtgttatc gtagaaaggc
     8281 gatgtgcgat aataatcatg gttttatctt tagaaatttt ataaatttca tccataattt
     8341 ttgcttcact ttgagtatca agcgcagaag ttgcttcatc aagcactaac atttcaggct
     8401 ctaaatataa agctcttgct atagctatgc gttgtttttg tcccccgctt aaattactcc
     8461 ccccatcgcc cacttttgtt tgcactcctt gaggtaaatt ttttataaaa tgctctaaat
     8521 ttgcttgttt gataacccta ttaagttttt cttcatcaac cgcatctcca aaagtgatat
     8581 ttttagctat actgtcatta aaaagataga tattttgcgg gatatagcct attttttggc
     8641 gataattttt tgtattattt gcatttaatt cttgctcatc aattaaaatt tgcccttctt
     8701 ttggttttaa aagtcctatg ataagatcta ctaaggtact ttttccacaa ccactctccc
     8761 ctataaaagc gattttttcg ccttttttaa tatttaagtt aagattttta aataaatatt
     8821 tttttccctc ataaccaaag ctaagattgc aaattttaag ctcttgatta aagcttaatt
     8881 tttcctcgcc caaattttct tcttcttgtc ttaaattttg ataaataata tccaaagaag
     8941 aatgataata aagcaaatca tgataacttg taataatacg atttgcactt ggcattaagc
     9001 gataaagcgc taaaacaaaa atagaaatcg tggataaaat acctgaaata tcactttcat
     9061 ttttcaaaac caaaaatacc acgataaaaa caagtacgca aaagcctatt ccttcaagat
     9121 aaattcgagg caccgcagct acgctttcgt tggtaatatt tgctttagaa aaagcttcac
     9181 tttgcgcttt aaaaagactt aatactccat cttctttggt tttaagctta ataaatttga
     9241 aattatttaa atttgtattt aaaatttcaa agaaattttt catcgcttct tcgcgtctta
     9301 ctcctgcttt tttaatgata gggcttaaaa ttttcactaa aataaaggca tttaacacca
     9361 taaaaatact taaaaataaa gtgattttat aattaatcaa aagcattaaa gcataaagca
     9421 aaagtactac aaaaatttca ctcatcaaaa
//
LOCUS       DARGEX010000060         9251 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.060, whole genome shotgun sequence.
ACCESSION   DARGEX010000060 DARGEX010000000
VERSION     DARGEX010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9251
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.060"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            11..1171
                     /gene="pglE"
                     /locus_tag="SF010_001193"
     CDS             11..1171
                     /gene="pglE"
                     /locus_tag="SF010_001193"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG8230118.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKNDVYEISKLILKSIKA"
     gene            1173..2945
                     /gene="pglF"
                     /locus_tag="SF010_001194"
     CDS             1173..2945
                     /gene="pglF"
                     /locus_tag="SF010_001194"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG8230119.1"
                     /translation="MIFYKSKRLAFFLISDIVLILLSVYLAFSLRFSGDIPSIFYYGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKERIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            2945..3838
                     /locus_tag="SF010_001195"
     CDS             2945..3838
                     /locus_tag="SF010_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8230120.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            3951..4343
                     /locus_tag="SF010_001196"
     CDS             3951..4343
                     /locus_tag="SF010_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG8230121.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4366..5211
                     /locus_tag="SF010_001197"
     CDS             4366..5211
                     /locus_tag="SF010_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG8230122.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5215..7152
                     /gene="ftsH"
                     /locus_tag="SF010_001198"
     CDS             5215..7152
                     /gene="ftsH"
                     /locus_tag="SF010_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG8230123.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NGLPTRLQELEEVKTEVKVEE"
     gene            7149..7766
                     /locus_tag="SF010_001199"
     CDS             7149..7766
                     /locus_tag="SF010_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8230124.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            7776..8504
                     /gene="pssA"
                     /locus_tag="SF010_001200"
     CDS             7776..8504
                     /gene="pssA"
                     /locus_tag="SF010_001200"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG8230125.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(8495..>9251)
                     /locus_tag="SF010_001201"
     CDS             complement(8495..>9251)
                     /locus_tag="SF010_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG8230126.1"
                     /translation="EKNITIKFHSFQNFYEDFKSHKLIFNHEHQSIFKKNTSQQITLL
                     HPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVAD
                     EEIKHFKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLEAKGLDA
                     NPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTF
                     KQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3144 a         1069 c         1794 g         3244 t
ORIGIN      
        1 aggataaatc atgagatttt ttctttctcc tccgcatatg ggtggtaatg aattaaaata
       61 catagaagaa gttttcaaaa gcaattatat agcacctttg ggtgaatttg taaatcgctt
      121 tgaacaaagt gtcaaggctt acagtaaaag tgaaaatgcc ttagctttaa attcagccac
      181 agcggctttg catttagctt taagggtggc aggggtaaaa caagatgata ttgttttggc
      241 ttcttctttt acttttatcg cttcagtagc acctatttgt tatcttaaag caaaacctgt
      301 atttatagat tgtgatgaaa cttataatat cgatgtagat ttattaaagc ttgctattaa
      361 agaatgtgaa aaaaaaccaa aagcattgat tttaactcat ctttatggca atgcggctaa
      421 aatggatgaa attgttgaaa tttgcaaaga aaatgaaatt gttttaatcg aagatgctgc
      481 tgaagcttta ggaagttttt ataagaataa agctttagga acttttggag aatttggagc
      541 ttattcttat aatggcaata aaattatcac cacttcaggt ggaggtatgc ttataggaaa
      601 aaataaagaa aagattgaaa aagcaagatt ttatagcact caagctaggg aaaattgttt
      661 gcattatgaa catttagatt atggttataa ttaccgctta agcaatgttt taggagctat
      721 tggcgtagcg caaatggagg ttttagaaca aagagtgctt aaaaaaagag aaatttatga
      781 gtggtataaa gaatttttag gagagtgttt tagcttttta gatgaattag aaaattcaag
      841 aagcaatcgc tggttaagta cagctttgat tgattttgat aaaaatgaac ttaattcttg
      901 tcaaaaagat ataaatatca gtcaaaaaaa tattactttg catccaaaaa tttcaaaact
      961 catagaagat ttgaaaaatg aacaaataga aacaagacca ttatggaaag ctatgcacgc
     1021 tcaagaagta tttaaaggag ctaaggctta tcttaatggc aatagtgagt tatttttcca
     1081 aaaaggaatt tgtttgccaa gtggtacggc gatgagtaaa aatgatgttt atgaaatttc
     1141 aaaactgatc ttaaagagca taaaggctta aaatgatttt ttataaaagc aaaagattag
     1201 catttttttt aatttcagat attgttttaa ttttacttag cgtttatctg gctttttctt
     1261 tgagatttag tggagatatt ccgagcattt tttattatgg tatgatggtt tctgctatta
     1321 ttttgcttgt tttaaaactt tcatttttat ttgtttttag aatttacaaa gtagcttgga
     1381 gatttttttc tctcaatgaa gcaagaaaaa tttttattgc tttgctttta gctgagtttt
     1441 gtttttttct tattttttat ttttttagtg atttttttaa tccttttcca agaagtgcta
     1501 ttgtgataga ttttgttctt tcttatatgt ttataggtac tttaagaatt agcaaaagaa
     1561 tgcttgtgga ttttaaacct tctaaaatga aagaagaaga aactccttgt attgtagtag
     1621 gggcaacttc taaggctttg catttgttaa aaggtgcaaa agaaggttct ttagggcttt
     1681 ttcctgtggg tgtagttgat gcgagaaaag agcttatagg gacttattgt gataaatttg
     1741 ttgtagaaga aaaagaaaga ataaaatctt atgtagaaca aggggtaaaa actgccatta
     1801 ttgctttaag acttgaacaa gaagagctta aaaaactttt tgaagaactt gtagcttatg
     1861 gtatttgtga tgtaaaaata ttttctttta caagaaacga agcaagagat atcagtatag
     1921 aagacttgct tgctagaaaa ccaaaagatt tagatgatag tgctgtggcg gcttttttaa
     1981 aagacaaggt agttttggta agtggagcag gtggaactat aggcagtgaa ctttgtaagc
     2041 aatgtattaa atttggtgct aagcatctta ttatggttga tcatagtgag tataatcttt
     2101 ataagatcaa tgatgattta aatttatata aagaaaaaat tactcctatt ttactgagta
     2161 ttttagataa gcaaagttta gatgaggtat taaaaactta taaacctgag cttattttac
     2221 atgcagccgc ttataaacat gtgcctcttt gcgaacaaaa tccacattca gcagtaatca
     2281 ataatatttt aggaactaaa attttatgcg acagtgctaa agaaaataaa gtagctaaat
     2341 ttgtgatgat aagtacagat aaagcagtgc gaccaacaaa tattatgggt tgcactaaaa
     2401 gagtttgtga gctttatact ttaagtatga gtgatgaaaa ttttgaagtt gcttgtgtgc
     2461 gttttggtaa tgttttaggt tctagtggta gtgtgatacc gaaatttaaa gcacaaattg
     2521 ccaataatga gcctttaact ttgacgcacc ctgatatagt gcgttatttt atgcttgtgg
     2581 ctgaggcagt gcaacttgtt ttacaagctg gagctatcgc aaaaggggga gaactttttg
     2641 ttttggatat gggtaagcct gtgaaaatca tagatttagc taaaaaaatg cttttacttt
     2701 ctaatcgcaa tgatttagaa attaaaatca caggcttaag aaaaggtgag aagctttatg
     2761 aagagctttt gattgatgaa aatgatgcta aaacgcaata tgagagtatt tttgtagcaa
     2821 agaatgagaa ggttgatctt gattggctta ataaagagat agaaaattta caaatatgtg
     2881 aagatatttc agaggcttta ttaaagattg tacctgaatt taaacacaat aaagaaggtg
     2941 tataatgtat ataaaagata tacaaagatt tgaagataat cgctatcgtg ctagagctta
     3001 tatgagttat attttaacaa gaaatctgcc taataaactt cctgatattc accttgaaac
     3061 gattaaaaca gctttggata aaatagctca tgaagttgtt gtttttgatg ctttgtatat
     3121 tttagatatt tcaggtatgc aaatagaaaa tgcgatttcc ttaaataaag ctcatgaaat
     3181 agggcagggt gaggatagaa gtactcgttc ttatttttat agagctgtaa aattaagacg
     3241 atgtgttttg agcgatcctt atccttcggt tttaaataat gagctttgcg tgacagcttc
     3301 tatgccaatt tacgatgata aaaataactt gctttttgtt gtttgtattg atatcaagct
     3361 tgaagatatt ttaaagatta ttcaagcagg aaaatttgaa tttgttttta ctcagtttag
     3421 tcgtttggta tatttttgct tcgcactggt tttatttgtg attacttgtt ttttatttca
     3481 aaaaggtttt tttagtcttt ttgataatca agctataggt atagaacata tgtttgaaag
     3541 taccatcgct ataactttgg ctttagctat ttttgatttg gcaaaaactt tgatcgaaca
     3601 agaagtatta ggaaggacga aaaaagaaga aggtggaatt caaaaaacta tggtgagatt
     3661 tttgggttct attatcattg ctttagctat agaagctttg atgttggtat ttaaacttgc
     3721 tattggtgat ctttctcaga tgatttatgc gatttatctt atcggtggag tgagcttgct
     3781 tcttttaggt ttaagtgtat atttatttac ggttaagtat aaaaataata atatttgagt
     3841 aaaaatttaa gtaaaagatg atataatgct gttttttaaa attttttagc ttgattaata
     3901 aggctaaaaa gggtaaaata aaactataaa aactttgaaa ggacgaaatt gtgaaattgt
     3961 tagttgttga tgacagttct actatgagaa ggattattaa aaatacccta acaagacttg
     4021 gacacgatga tgttttagaa gctgagcatg gcgttgaagc ttgggattta ttaactaaaa
     4081 atgaagatgt aaaagtttta attacagatt ggaatatgcc agaaatgaat ggcttggagt
     4141 tggtaaaaaa agtaagagca gagaaaaaat atgaagatat gcctatcatc atggttacaa
     4201 ctgagggcgg aaaagctgaa gtgattactg ctttaaaagc tggcgtaaat aactatattg
     4261 taaaaccttt tactccacaa gttttaaagg aaaaacttga agatgtttta ggaacaggaa
     4321 gtggagaagg tgcagctgag taaaggctga tttttaaaat tctaaatgca aaaaaaatat
     4381 tatgaattgt tctttatcgt agaagagcag tataaaaatt tatttcttga ttttgctttt
     4441 gatttaggta tagaagccat agaagagaaa gataatggtg tttacattag atcccatgag
     4501 agtttagaag agttttcatg ggcacttgaa atatttgctc aaaaacttac aactactttc
     4561 aatttaaatc ataaaattat ttctaattta agtcttgtag agaaagaaaa caaggactgg
     4621 atacaagaat ataaaaaagg cataaaacct atcttagtgg ataatgttta catccataca
     4681 acttggcaag aagaaaagaa gaattgtata aatataaaga ttaatccagc cttagccttt
     4741 ggctcaggac atcacgaaag cacatattct tgtgtaaaat ttttacaaaa attttctaaa
     4801 agtaaattaa gagctttaga tcttggttgt ggtagtggaa ttttgggtat tattatggca
     4861 aagtttggct gtaatgttga aatttgtgat actgatgagt tggctattga tagttcttta
     4921 gaaaatgcaa gattaaatgg tgtcgatttt cacaaggctt ggtgtggatc tatagataaa
     4981 gcaaatggtt tatataatct aattgttgca aatatcattg cagatgtgat tttaatttta
     5041 gaaaaagata ttaaaaacca tttagaagat aatgctatac ttattttgtc aggaatttta
     5101 gataaatatt caacaagaat taaagaaaaa tttcaagatt tggaactcat tgatgaaatg
     5161 caaatcaatg agtggtgtag ttttgtatat aaaaataata aaaaaggata agtaatgaat
     5221 aataataccc caaataataa gggtaatccg cagggtaata atttttttaa caaaaatccc
     5281 atttttattt ttgcgatttt tgcaattgta atgataatta tttttaaggg attttttgat
     5341 ggcaatggtt cttttggcgg ggcattgaat ggcaatgaag taaataaaaa tgtcccttat
     5401 tctgagttaa aaaagcttat tgaaagtgga caaatcaatc aagttagtat aggacaaaca
     5461 acaatcaaag cgatttcaag ctctcacaat actgtttata cagcaaaaaa agttaatgat
     5521 cctgagcttg tgagtttact agatagtaaa aatatcgctt atggtgcgta ttctgaaaca
     5581 aattggttta cggatatact tttttcatgg gttttgccag tatttatttt ctttggtatt
     5641 tggatgtttt tggcaagtcg tatgcaaaaa aatatgggaa gttctatatt gggtatagga
     5701 agttctaaga agcttgtaaa ttcagaaaaa cctaaagtaa aatttagcga tgtagctggt
     5761 gttgaagaag ctaaagaaga agtaaaagaa attgtagatt ttttaaagta tcctgaaaga
     5821 tatattaaat tgggagctaa aattccaaaa gggcttttac ttgttgggcc tccaggtaca
     5881 ggaaaaactt tgcttgcaaa agcagttgca ggtgaagctg atgtgccgtt ttttagtgtt
     5941 tcaggttcat cttttataga aatgtttgtg ggtgtaggtg cttctcgtgt gagagatttg
     6001 tttgaaaatg caaaaaaaga agctcctgct attgttttta tagatgaaat agatgctatt
     6061 ggtaaaagtc gtgcagcaag tggcatgatg ggtggaaacg atgaaagaga gcaaacttta
     6121 aatcagcttt tggctgaaat ggatggcttt gggacagaaa gttccccagt cattgtttta
     6181 gcagcaacaa atcgcccaga agttttagat gcagcgcttt taagaccagg aaggtttgat
     6241 agacaagttt tagttgataa acctgatttt aaaggtaggt gtgatatttt aaaagtacac
     6301 atgaaagatg tcaaaatatc cccaaaagtt aaagtagaag atatagcacg tttaaccgca
     6361 ggacttgcag gagctgatct tgcaaatatt attaatgaag cagcactttt agcgggtagg
     6421 gattctaaaa aatatgtaga acaaaatgat ttagttgaag ctgttgaaag agctatagca
     6481 ggacttgaga agaaatcacg tcgtattaat gaaaaagaaa agaaaattgt tacttatcat
     6541 gaatgtggtc atgccttgat tgctgaaact accaaaggtg caaagcgtgt aagtaaagtt
     6601 tctgtgattc cacgtggtct tgcggcttta ggatacacat taaacacccc tgaagaaaat
     6661 aaatttttaa tgcaaaaaca tgaacttatc gctgaagtag atgtactttt gggtggtcgt
     6721 gcggctgaag aagtatttat aggtgaaatt tcaacgggtg caagtaatga tttagaaaga
     6781 gcaaccgata tcataaaagc tatgatttct atgtatggta tgagtgaaat tgcaggactt
     6841 atggtgcttg aaaaacaaag aaatactttc ttaagtggtg ggcaaactat aaaagactat
     6901 tctgaaaaga tggcagaatc tttagatgat tatgtaaaga aaaccttaga tgaacgctat
     6961 aaagatgtta aagatacttt aaatacttat aagggagcga ttgagactat ggttgcagcc
     7021 ctttatgaag aagaaactat tgaaggtaat aaagtgcgtg agattattaa agagtttgag
     7081 gatcaaaatg gtttaccaac tcgtttacaa gaactcgaag aagttaaaac tgaagttaaa
     7141 gtagaagaat gaaagatttt attgcaaaag atggatattt aagtcttatt attttaagct
     7201 taatttttat ttttgtgtgg attttttatt ctttttccat cttgctatta gcattaattg
     7261 taatttgtat ttttcttttt agagcgccca aaagagaact tgtttgtagt gatgaaaaag
     7321 ctatttttgc acctatggat ggtagggtta ctaaaataga aaatattcat cataaagatt
     7381 tgggtgaatg tgttgaaatt actattaaaa atgctcttta tgatgctggg aattttaata
     7441 caccttttgc aatgtctata atagatattc gtttacgaca tgggcttttt ttgtgcagtg
     7501 aattaaaatc tgcaaaaatg atgaatgaaa gagcttttat tttggcaaaa gttaaagaga
     7561 ataaaacgat agccttgcga atctatgcag gttcttttga tagaaaatta aagcttgata
     7621 atatttctca tgatttaaaa gcaggagata gaatgggttt tttaattaat ggctctataa
     7681 gtttactttt accaaaagat actagaattc atataggctt aaatgatgaa attaaagcag
     7741 gttcattgct aggctatttt gcgtaaggaa aaataatgaa taacagaccg caactaattt
     7801 atattttacc caatcttttt acagctgctt cagctttttt aggggttatt tctattatag
     7861 cttcaataca tggaaattat tatacagctt tgatttatat tattttatct ttgatttgcg
     7921 atgggcttga tggccgtgtt gcaagactta caaattctac ttcaaaattt ggagtagaat
     7981 ttgattcttt ggctgatcta gtagcttttg gagttgctcc agcggttctt ttttatatgg
     8041 cgataggtta tgattttgga aaacttggat ctttgattac agcttttttt gtggtttttg
     8101 gagctattcg tttggcgaga tttaatgtta ccacaggcac ttatgaaccc tccgttttta
     8161 taggtcttcc tatacctact gcagcagttg tgagtgctat atggacttat gcgtttatca
     8221 gttatgattt tttaaagcct tatggcgtag tttttttggt gcttcaagca attttagggc
     8281 ttttaatggt aagtaatata cgttatccta gttttaaaaa gcttgatttt aatcgttcta
     8341 gtgttttaaa agttttgatt attttaatta taatattttc atttttatat ctttaccctc
     8401 ttgaaagttt agtaatttta gcaagcttgt atgtgcttta tggaattatt cgggttttat
     8461 ataccattat cgtttcaaaa tttaagataa gaaatcaaga gtaaaatttt tcaatgactt
     8521 cgcattcttc ttgagtgaag ccagctttga ttcttgcttg aatgttaagt ttttttcccg
     8581 caagagagaa ttgtttaaat gttttgcaaa gctcaataaa atcatacctg ttttgatttg
     8641 caaatttcca ccaagtatct ccttttttaa cgtgttttat ttcatcatta agtataattt
     8701 caagatattc cattagaaga tttttaatgg aatgattgga actttgaagt ttttgaacaa
     8761 caaaggggtt ggcatcaagc cctttagctt ctaaacctct atgaactact cccattctaa
     8821 agcttaaaga gtcttttgta gcttctagag cagattctaa attatcatgc actggaaaat
     8881 ttccatattt gtaactaagt tctttaagtg ctgaatttaa aagtttgaaa tgtttaattt
     8941 cctcatctgc tacctccagc caatcgtaat aaaattgcaa aggtagattt ttaaagcgat
     9001 aactcgcatc taaagccagg ttaattgcat taaattctat atgagcgact gaatgaatta
     9061 ttttagcaag cgcatgagtt gaattgacaa atttaggcct tcttatacgc gtaggatgaa
     9121 gcaaggtaat ttgttgtgat gtattttttt tgaaaatgct ttgatgctcg tgattaaaaa
     9181 tcaatttgtg gcttttaaag tcttcataaa aattttgaaa agagtgaaat tttatagtta
     9241 tatttttttc a
//
LOCUS       DARGEX010000061         9198 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.061, whole genome shotgun sequence.
ACCESSION   DARGEX010000061 DARGEX010000000
VERSION     DARGEX010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.061"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(28..657)
                     /locus_tag="SF010_001202"
     CDS             complement(28..657)
                     /locus_tag="SF010_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG8230127.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(641..1942)
                     /gene="miaB"
                     /locus_tag="SF010_001203"
     CDS             complement(641..1942)
                     /gene="miaB"
                     /locus_tag="SF010_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG8230128.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(1939..2181)
                     /locus_tag="SF010_001204"
     CDS             complement(1939..2181)
                     /locus_tag="SF010_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230129.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            2308..3396
                     /gene="nusA"
                     /locus_tag="SF010_001205"
     CDS             2308..3396
                     /gene="nusA"
                     /locus_tag="SF010_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG8230130.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(3412..4599)
                     /locus_tag="SF010_001206"
     CDS             complement(3412..4599)
                     /locus_tag="SF010_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230131.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHHKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFVAFYWKWFYK
                     KYL"
     gene            4674..5720
                     /locus_tag="SF010_001207"
     CDS             4674..5720
                     /locus_tag="SF010_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG8230132.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            5720..6940
                     /locus_tag="SF010_001208"
     CDS             5720..6940
                     /locus_tag="SF010_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8230133.1"
                     /translation="MQYLDSRGVKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSSNDGDEKSIEI
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILIRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNLSFASIQNEN"
     gene            6930..8753
                     /gene="recG"
                     /locus_tag="SF010_001209"
     CDS             6930..8753
                     /gene="recG"
                     /locus_tag="SF010_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8230134.1"
                     /translation="MKIKESDFEFFKKLKIKSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKGLIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDAKIAAFIHKYLNYENLQESGIGDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAHQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLIIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKMPN"
     gene            complement(8750..9133)
                     /gene="ctb"
                     /locus_tag="SF010_001210"
     CDS             complement(8750..9133)
                     /gene="ctb"
                     /locus_tag="SF010_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG8230135.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWTGMLLGEGDYNGQPLKKHLDLPPFPQEFFEVWLGLFEESLNIVYNEEM
                     KTVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT         3308 a         1294 c         1482 g         3114 t
ORIGIN      
        1 aatatttttt taagtaaaaa taacatttca ttccttaaat tgatcagcta agctaatttt
       61 atcaaattgt ttcattagaa attctttagc tttttcttta tctaaagata aaatatccaa
      121 aggttcactt agactataag taatcttact aaaaggtttt ggcaagatca tcttatccca
      181 acttttaaat ttccaaaaac gatttgcttc atagtttaaa attcttatct ttagttcttt
      241 tttttgagcc aaaatgatag aaccatctga aatactatga taaggccctc gtggaccatc
      301 gggcgtgata actatatcgt cattttgttc taaaacttta aatgcagctc taagtgcact
      361 gctagcaccc cttgaagtgc ttcctcttac agtatcaaga ccgaaaagct tgatgatttt
      421 tgcaatttgt tctccatctt tatggtggga gatcatgaca taggcttttt tatttttttg
      481 tctataatgt ctaaacgcaa aaggcatgag tgctaatttt ccatgccaaa aaagtatcac
      541 accagcttta cggtcaactt tttcaccttt atagtgcttt ttacagctta aaaaaataag
      601 ccattgcaag atgaaaatta tatatgttaa gcaatggatt ttaaacgatt tccccatata
      661 aaaccatacg ctttgcatta gttattttta cttctttaaa ttgccctaaa agttcttcgc
      721 taccttcaac ttgaactaaa aaattattat ctgttcttcc agcaatgcta ttgcctgctc
      781 ttaattcttc aaataaaact ttaaaagttt tattttcttg tttttttaca atttcatcta
      841 aaatttcact atgacgattt tgtaaggtgc taagtcttct tgaagctgtt tcttcatcga
      901 tttgattagg catggttgcg gcttttgtta aagggcgttt ggagtattta aaagaaaaaa
      961 tttgttcaaa acgcactttt tccaaaacat ccatagtttc ttcaaaatct ttttcacttt
     1021 cccctggaaa agctacaata atgtctgtag aaatgctaac atttggacaa agttctctaa
     1081 gttttaaagc tctatttaaa taccattctt tagtatagcc acgcttcata gcttttaaaa
     1141 tttcacttga gccgctttgt aaaggcatgt gcatggattt gcaaactttt ggattattgg
     1201 caaaaacttc taaaaattta tcatccatgt gcaaaggatg tggacttgta aagcgaatgc
     1261 gttccaaacc ttctatagtg ctaagttctt ctaaaagatc tgaaaagtcc atttttttat
     1321 gttcgtttct aaatcttttg ccatagttat tgacattttg tcctagcaag aaaatctctt
     1381 tagcgccttt ttcaatagct ttttgagctt ctttgtagat gatgttaaaa ggtatggaaa
     1441 tttcatctcc tctagtatgt ggcactatac aataagtgca gtgtttgtca caacctatgg
     1501 agatattaat ataggattta taaatactat ttctaaaatc tgcaaaagca aattcacttt
     1561 catcatagtc tatgtccacg cccataaatt ttggagtttt tatagcttga gtgattttgg
     1621 aaatatttct tgctcctaga acaaaatcca cataaggagc acgtttgaaa atttcatttc
     1681 ctaaatgtga tgcagtacat ccacaaactc ctattttagc accttctttt ttaacttttt
     1741 caaaaccacc tacttctgag aaaagtttat gcacaggttt ttcacgcact gaacaggtat
     1801 tgataagaat aagatctgct tctttgatat cttctgttag tgcgtaattt tctttttgtg
     1861 ttaattctgc gatcatatgc tcagaatctc tgacattcat cgcacaacct aaagtttgga
     1921 taaaaagttt tttagcactc aaagaatatg tacctcatac ataaaatcat tatcatcaag
     1981 tccgtatttt acggttctat gataaatgct tactcctttt ttttcaaaat gatttacaag
     2041 ggcaataagt tgtttgtgtg tattatcttt atcaaaataa aaaaactttt gtccttcttt
     2101 ttctatagcc tcttcgattt tttctaggct aatattttta ggtttttcat taatcaaagt
     2161 tcttgccaat tttaattcca tagctaaatc cttaagaatt ttcattttaa tctataattt
     2221 tagcaaattt tacttttaat taaacttatt aaggatataa tttttatcta catttttaaa
     2281 tttcccacaa aaaaggtttt ataaaatatg gaaaagatag cagatattat cgaatctatt
     2341 gctaatgaaa aaaatttaaa cttagagaat gtaagagaaa aggtagctac cgctttaatc
     2401 aatactgcaa aaagaattta tggacaagaa tatgagtttt ttgtggatcc taaaaattta
     2461 aatctttatc aaaaaattac catagtagca gataatgacg agagattgca aaataaaagt
     2521 gagagtttta tcgcgttaag taaggcaaaa tcagaagctc cagatgttga aataggagat
     2581 gaattaacct atgaatgttc tttggaaaat ttaggaagaa ctgcggtaaa taccttgcat
     2641 aaagaacttg aatatcatat acaaaaatta ttagaacaaa ctatttttga aaaatataaa
     2701 aacaaagtag ggcaaatggt ttttggtaca gttgttagag tggataatga agaaaatact
     2761 tttattgaaa tagatgaatt aagagctttt ttaccgagaa aaaatcgcat taaaggggaa
     2821 aaatttaaaa taggtgatgt ggtaaaagct gtgatacgcc gtgtttatac agataaaggt
     2881 attaaaatcg agcttagtcg tacaagtcct aaatttttag aatgtttact tgaagctgag
     2941 gttccagaaa tcaaagatgg ttatgtcaat attataggat gtgctagaat tccaggtgaa
     3001 agagcaaaaa tcattcttca ggccaatgga gcaaatatcg atcctgtagg tgctacagta
     3061 ggtgttaaag gtgtaagaat taatgcagta agcaaagagc ttcataatga aaatattgat
     3121 tgtatagaat ttacaaatga gagtgaaatt ttaatttctc gtgccttggc tcccgctatt
     3181 gtaaattctg taaaaattga agataaaaaa gctattgtaa gtttaaatag cgaacaaaaa
     3241 agcaaagcca taggaaaaaa tggtattaat attcgccttg cttctatgtt aagtggttat
     3301 gaaatagagc tcaatgaatt aagctcatca cagctaaata atgccatcag caatgaagaa
     3361 gcaatgaaaa atcttcaaga tttatttaaa atttaaaata tttgtgaatt ttcacaaata
     3421 ttttttataa aaccacttcc aataaaatgc cacaaagata aaaatcatac ccaataagcc
     3481 tgtaattagt tctaaactca agcctatttc aaataaaaag cccataagca ttgaaataat
     3541 agcgctaaaa ctaagataaa tcatatctgt ataagcgatc actctaccat gatattcttt
     3601 gtcggcattt ttttgtatca tagtgtaggt gtaagcccaa agtgctgagg taaaaaaacc
     3661 tgcaccgatt aaacctaaaa aagaaatata aaaattaaat tgagttaaag cccaaagtat
     3721 aatacccaag ccttgaccaa gatacatgta aaataaattt ttatcattaa taaatttgct
     3781 taaaaccata ggtcctatag ctaaagaaca agcacgtact gcatttaaaa accctattac
     3841 taaagcagca gataaaactt ctttatattg atgttgcgct aaaagcgtaa ccaaggtttc
     3901 ataagcagtt aaacctataa aagcgtgaag caagataaga tgaaaaatta tcttattgtt
     3961 taaaacatag aaaaatcctt cttttatcat ggtaaaaaag cgactttgtg ttttgtgatg
     4021 aaaatcagga atgcttaatc ttactaaaaa agaaatgcct atgagtataa gtatacagtc
     4081 aaatagaaaa gcggttttaa ctcctagaaa ataaataaaa attcccgcac ttgccatacc
     4141 tgctgtataa gaaatcgccc aaatgacact gtgcatttca ttagcgagtt taagttcttg
     4201 aggagttaaa attttggcca ataaactcat ttcagcttga aaataaatcg aagcaacaca
     4261 aagtcttatg aaaattaaaa taaataaaag ccaaagcata ctaagacttg tgacaaaaat
     4321 aagacaaaaa atagaaatta attctatgct aatcatgctg agtaaaagtt ttttaggttt
     4381 atttttctct actatgacgc cattaatagg agcaagtaaa actccaggta aaaaagcaag
     4441 catagcactt gtagctgttg cccaagtagg agcattaagc tcgactaaaa gggtaaaaac
     4501 tcccgtttga gaaaaccatg ctccaaaata tactataaac tgaaccgaag ccaatattct
     4561 gatattttta ttatttttta atagttcaat gtaattcata agcgaaacta tagcataatt
     4621 tatattttaa atgctataat tattttaatt atgtaaaaaa acaaggaaaa attttgaaaa
     4681 gactggataa aaaagaagct ttagatttat tacaccatgc aagtttaact gaacttggag
     4741 aaatggctta taaaagaaaa ttagaacttc atcctgaaaa aatcactact tttgttgtag
     4801 atagaaatat taattatacc aatgtttgtt gtattgattg ttctttttgt gctttttatc
     4861 gccatcataa agaagatgat gcttatattt taagctttga ggagataggc aagaagatag
     4921 aggagcttga agctattggg ggtacgcaaa ttctttttca aggcggggtg cacccaaagt
     4981 taaaaataga atggtatgaa gaattagttt cttggataaa agaacattat ccaaatatca
     5041 ctgtacatgg tttttcagcg gttgagatcg cttatatcgc aaaggcatct aaaatttcaa
     5101 ttactgaagt acttcaaaga ctacaagcta aaggtttatt ttctatacca ggagcaggtg
     5161 ctgaggtgct aagcgatagg gtgcgtgata ttatcgcacc caataaatgt gatacagcta
     5221 cttggttaga agtacatcgc caagctcata aaatcggcat gaaaagtaca gctactatga
     5281 tgtttggaac ggttgaaaat gatgaagaaa tcatcgatca ttttgagcat ttgagaaaat
     5341 tgcaagatga aacaggggga tttagagctt ttattttatg gagctttcaa agtgataata
     5401 ctgctttaat ccaaaaacat ccagagatta tgaaacaaag ttctaacaag tatttaagac
     5461 ttttagcttt agcaagactt tatttagata attttaaaaa tttacaaagt tcttgggtaa
     5521 ctcaaggctc gcttataggt caacttgctt taaaatttgg ggccaatgat ttaggctcaa
     5581 ccatgatgga agaaaatgta gtaagtgctg caggagcaag ttatagaatg aatcaagatg
     5641 agatgataag gctgattaga agtttaggcg aaaatccagc taaacgcaat accgcttatg
     5701 aaattttaga aaggttttaa tgcagtattt agacagtagg ggtgttaaaa tcccttttat
     5761 ttttgaaaaa aattctgatt ttcctattgt tgttttaaag cttgttttta gaaattgcgc
     5821 tagaagttat gatgaaatag caggcttagc taagatgttt tcacgtattt taaatgaagg
     5881 tgtggatgat aaatttttta aagatttaga atttagagcg ataaatttag aggcaagtag
     5941 tggttttgaa agtttggaaa tcaatctttc ttgtttaaaa gaaaattttg attttgcttt
     6001 aaagagcttg gaaaaattgc ttttaaaacc aagaatagaa gaaaaaattt tgcaaaaatt
     6061 aaaaatcaat gccttaggtg agctcgcgag taaaaatagt gattttgatt atttagcaaa
     6121 aaatttactt aatgctcaaa tttttaaatg caaagaattt caaagctcaa acgatggaga
     6181 tgaaaaaagt atagaaatct tatctttaaa agatttacaa aatttttata aaaattttat
     6241 ccatcttagc gatttggttg tgattttagg aggagattta gaagaaaaac aagccaagga
     6301 agatctttta aaactattat caaaacttca aataggcaaa aaaaatactc caaaaaaata
     6361 tgaattaagc aaaaacatta aagatgaaat tttgatacgc ccagaaagcg aacaagctta
     6421 tatttatttt gctacacctt tttttgctga ttttaaagat aaggatttat atcttgcaaa
     6481 aattgcttta tttgttctag ggcaaggagg atttggttca aggattatgg aagaaattcg
     6541 tgttaaaaga ggtcttgcat actcagctta tgctatgctt gatatgaata tgtctttttc
     6601 tagagttttt ggatatttac aaactaaaaa tgaaagcgct aaagaagcta aaaaaatcgt
     6661 aaaagagctt tttgaagatt ttataaaaaa tggcatgact caaaatgaac ttgatcaagc
     6721 taaaaatttt ctcataggat caactccttt gcgttatgaa agcttaagca agcgtttatc
     6781 tatgtctttt aacgaatttt atcaaggttt aaatttggga tattataaag aagagttaaa
     6841 acttatggaa aaggttaaac ttgaaaccat aaatgcttat attaaaaaac atcaagagct
     6901 tttaaatcta agttttgcaa gcatacaaaa tgaaaattaa agaaagtgat tttgaatttt
     6961 ttaaaaaatt aaaaattaaa agtgctattg atttagcgct tcttttacct aaaaaaattg
     7021 aaaatttaaa tccaagtaaa aatcctaaag aaaatgaaat ttgcacccaa aaaatcacta
     7081 taaaaagcgt tagttcaaga aaaaatcaac tttttggttt aggtttttgt gaagaatggc
     7141 aagaaaatat ttcttttgtg ttttttcatc ctagagcttg gcattttggg atttgtaagg
     7201 taggaaaagg gcttattttt aatgctaaac tctcgcgttt taatcacact tggcaattta
     7261 acaatcctaa aattttaact tcttttgagg gttttagtcc aaagtatcaa attttaggtt
     7321 taaaagatgc aaaaattgct gcttttatac ataaatatct taattatgaa aatttacaag
     7381 aaagtggcat aggggataaa tatatacatt ttcttttaaa tttgcatgct tatgatgaaa
     7441 aaagtttttt tatgtttgaa aatttgcaaa attttagcaa agatttaaaa tatatagaaa
     7501 tatataattt tttaaagcgt ttaaaagcta aaaaaacgca ttttaaagct catcaaatca
     7561 atgtttttaa catagccaat tggcttaaag atttgccttt ttctcttact aaagatcagc
     7621 ttaacgcctt aaaagatata gaaaaagatt tacactcaaa agaagccaaa aggcgtgtga
     7681 ttatgggtga tgtagggtgt ggtaaaacct tggttttgct tggtgcggct ttgatggttt
     7741 atcctaaaca agctattttg atggcaccta ctagtatttt agcgcatcag ctttatgaag
     7801 aggctaagaa atttttgcct gattttatga atattttgtt tattaaagga ggtaaaaaag
     7861 aaaaagattt agaacaaaat attcaaaaag caaatcttat tataggtact catgctttaa
     7921 ttcatttaga aagccataat gccgtacttg taatgataga tgaacaacat cgttttggct
     7981 cggctcagcg tgagaaaatt cattctttaa gtaaacaaga atttgcccct cattttatac
     8041 agttttcggc tacgcctatt ccaagaactt taagcatgat acaatctgaa cttttaaatt
     8101 ttagtttcat taaacaaatg ccttttaaaa aagatatcac aacttattgt atacaaaatg
     8161 aaggcttttc taagcttagc gagaagatca aagaagaaat cgctaaaaat catcaaatta
     8221 tcattattta tcccttagtg agtgctagtg ataatattcc ttatctttct ttagagcagg
     8281 ctaaagaata ttggcagagt cactatgaaa aagtttttgt aactcatggg aaagataaac
     8341 aaaaagatga aattttagag cgttttagag atgagggaaa tattttacta agcactacag
     8401 tagtggaagt gggcatttct ttgccaagat tgagtatgat agtgattgta ggagcggaac
     8461 gtttaggact tgctaccttg catcaacttc gtggtcgtgt aggtcgtgta gggcttaaaa
     8521 gcacttgtta tctttatact aaacttaaag aaattccaag tcgtttaaaa gaatttgcta
     8581 gcactttaga tgggtttaaa atagcagagc ttgatcttaa aaaccgtttg agtggagatt
     8641 tgctcgatgg ttttatgcaa catggaaatg agtttaaatt ttttgatttt tctaaggatg
     8701 aggagatttt agaaaaggta aaaaaagatt tggcaaaaaa aatgccaaat taatgtccac
     8761 catacttata aagcatattt tgaaaatgtg aagctatcat ttgtgcacgc tgtaaaataa
     8821 ctgttttcat ttcttcatta taaactatat ttaaactttc ttcaaaaagt cctagccaaa
     8881 cttcaaaaaa ttcttgagga aaaggaggta gatctagatg cttttttaag ggttgcccat
     8941 tataatcacc ttcgcctaaa agcatgcctg tccaaaaatt tcctattttt gctttatgtt
     9001 ctttccactc ttcatcactt gttccaatag cattgttaaa aataggacct aaatccttat
     9061 cttttctaac tttttcataa aatatttcca tgagttttgc tatgctttct tgattaattg
     9121 tttcaaattt catataagcc tttcttgaat gttaatttta tggcgttaat atagcaaaaa
     9181 taagataaat taaattta
//
LOCUS       DARGEX010000062         9172 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.062, whole genome shotgun sequence.
ACCESSION   DARGEX010000062 DARGEX010000000
VERSION     DARGEX010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9172
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.062"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1000
                     /locus_tag="SF010_001211"
     CDS             <1..1000
                     /locus_tag="SF010_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8230136.1"
                     /translation="LSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPI
                     ISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIF
                     FILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFCIFYL
                     LCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLI
                     NIILLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLN
                     FILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(944..1750)
                     /locus_tag="SF010_001212"
     CDS             complement(944..1750)
                     /locus_tag="SF010_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG8230137.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(1754..3136)
                     /locus_tag="SF010_001213"
     CDS             complement(1754..3136)
                     /locus_tag="SF010_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8230138.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLRLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(3139..3864)
                     /locus_tag="SF010_001214"
     CDS             complement(3139..3864)
                     /locus_tag="SF010_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG8230139.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSIFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            3986..5146
                     /locus_tag="SF010_001215"
     CDS             3986..5146
                     /locus_tag="SF010_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8230140.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKTKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(5143..5346)
                     /locus_tag="SF010_001216"
     CDS             complement(5143..5346)
                     /locus_tag="SF010_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230141.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(5348..6028)
                     /locus_tag="SF010_001217"
     CDS             complement(5348..6028)
                     /locus_tag="SF010_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG8230142.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            complement(5992..6603)
                     /locus_tag="SF010_001218"
     CDS             complement(5992..6603)
                     /locus_tag="SF010_001218"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG8230143.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGVCLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(6612..9152)
                     /locus_tag="SF010_001219"
     CDS             complement(6612..9152)
                     /locus_tag="SF010_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230144.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSNLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLEK
                     LTKTRLNGSLDVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIGLPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLTAKAHIIGTQVQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     TGMPNYASGIVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
BASE COUNT         3189 a         1553 c         1124 g         3306 t
ORIGIN      
        1 tttaagcaag aatcaatttt taagccttag aattatcacc cataatatta actttaaaga
       61 ctatctgagt aaaagttttt acgcaccttc ttatgatttt gaaaaattaa aagaaaaaga
      121 atacaatccc attatatctt acttcttaaa tcaacataca aatgaaaaga ttaaagaatt
      181 ttatggtgct ttattttttg cactgcccat atctttagag cttagaaacg atgtaaatta
      241 ctacggtata gcacacctta tagcaattag cggttatcac ataggcttac tttttagttt
      301 aattttcttt attttagctc caatttatag ttttttccaa aaaagatatt ttccttatag
      361 aaatttacgt ttagatttaa gtattttaat ttttgcacta cttttagctt atgcttgttt
      421 aataggattt gtcccttctt ttgtgcgctc cttgattatg gctttttgca ttttttatct
      481 attgtgtaaa aatataaaaa tcattaattt cgttacgctt ttttgtagta ttttattgtg
      541 catttctctt taccctagac ttttatttag tattggattt ttattttcta ttttaggtgt
      601 tttttatatt tttttatata tgcatcattt tgcaaataaa tttaataatc ttataaatat
      661 tattttgctt aatatttgga ctttttttgc tatggtttta cctgtgcttt atttttttcc
      721 acttataagc taccaacaaa ttttaggtat tattttgagt ggaatttttg taatatttta
      781 tcctttagta ttatttttgc atcttataaa ctatggagat ttgctcaatt ttatcttaga
      841 tgaatttttt aaatttaaaa tttatggaac taatatccat atcccatttt ggatttttat
      901 aagttatctt attgcttctt taatctctgt gcgatttaaa tatctagctt ttctttgtat
      961 ttttgcgaat tttattccct tcattatgat tgtgatttag aaaataatag agtttaagcc
     1021 caaaaagata aataatccaa gaaatataaa tccaaataaa aaagaataaa atagtagaaa
     1081 aagatccata aacgctagcg tatgttttat tatataccac gtaatataca aataaatttt
     1141 ttcctatata ccaaatagta cccgctccaa aagatactaa agctaaactt ttaagagttc
     1201 ccttatgaac agaacttgaa taagatataa aaaataaacc ccaaataatt acaaagggta
     1261 aaatttcaaa aaaattaaac cctattttat aatcatctaa agtttgttgg ataaaacctg
     1321 aaatataaaa actaagccca agccccaaag gaacaagagt taaaagagtc caataagaac
     1381 taatactttg ccaaagtcct ttaggttcat ttttagtaat gcgattgatt acaaaatcat
     1441 agcctgaaaa aaaagctaaa gaagtaaatg ccatagcaat aagacctaca atacccaaat
     1501 ttacactatt ttttaaaaaa gtatcgatgt aggtagcaac aacatcttgt tgcgttggta
     1561 ttaaaaaagc aaaaattact tgctttgctt tttcataata agctttaaaa ctggaaattt
     1621 gcgtaaaaac agaaaaacat acaaataaaa taggtattaa agataataca gtataaaaac
     1681 taagcgctgc tgcataattt aaaatttcct tatcacgcaa atttagtaaa atagtaaaaa
     1741 aatttttcac cttctaaagt cccattttaa aaggatttag tatattattt ggatcaaaag
     1801 cttttttaat atttctcatt aaattcattt cggcttcaga aaaagctaaa ttcataaaag
     1861 gtgccttaga gagtccgata ccatgctctc cgcttaaagt tcctccaagt ttcactgtta
     1921 atttaaaaat ctcttccaca gcttcatagc cttttttcac ctgctcttta tcatttttat
     1981 caggaaccat aacattagta tgcacatttc catcccctgt atgtccaaaa caaggaattt
     2041 taaaaccata ttttttagaa atctcatcta taccttcaag caaagtaggt agtttagaac
     2101 gcggaactgt aatatcttca ttaagtttta aagttccata catggcaatg ctttgagaac
     2161 aatttcttct agcaaaccaa atatctgcgg tttcttgttc atcttttgct attttaaatt
     2221 cgctagcgcc agcttctaaa aaataatatt ctaaatttct taaatcctca tcaatagcct
     2281 ctttaacatt accatccaca tcagcaatca aaatagctcc agcttctata ggcaaacctt
     2341 tattaaattt gctctcaacc gctctaatgc taagattgtc taaaaattcc atagatacag
     2401 gacttacacc gctagcaaga cttttgtaaa ccgcattcat agcacttttt acacttggaa
     2461 aaatagcaaa agcagttttt ttaaatttag gcaaaggtat taatcttaaa gtaagctcac
     2521 ttaaaactgc caaagaacct tcactagcga ttaaaattcc tgccaaatta taacctgcta
     2581 catctttaat agtgcgtttc cctgcacgaa tgatttctcc gctaggcaaa acagccctta
     2641 aagccatcac ataatctttt gtaatgccat attttgcagc tctcattccc ccagcatttt
     2701 cgcttacatt accccctaag cttgaatact ccatgctagc agggtcaggt gggtaaaaaa
     2761 gtccatattt agccacttct ttttgtaaat gtatattaat aaccccaggt tgcacaacag
     2821 ccactaaatt ttcaagatca atttctaaaa ttttattcat atgcttttca aaagcaagca
     2881 ccaccccgcc attaacagct aaagctcctc ctgtaaaacc agatcctgag cctcgaggta
     2941 tgactatgat attattttca ttgcaaaatt ttaaaatttg agcaatatct tcttcatttc
     3001 ttggaaaaag aaccccatcg ggtaaataat gtttttttgt cgcatcatag ctataagctc
     3061 ttttgtgaat ttcatcaaaa taagcgtttt cttctcctaa aaatcgttta aaatattgtt
     3121 caaattcttt tttcatgttt attgcacctt aggaagatta atcaaagcat cataatatct
     3181 ataataattt cctatttctt gagagttaaa atcaaaaaaa ttacttttat atccacctat
     3241 acgagaataa aaaggaacct gaacgctaat tggtttgctt ataggcactt cataaagctt
     3301 attaaaatct tgacaatcca caacttctgc ttgattttcc aaagctacaa ccaaaatacc
     3361 aaccgcatta tcatcacaaa attgcctaag atctgaacgc ttaggagaaa gagtagccgt
     3421 tctaattaat tgtgctccaa aaatgtcaat atgggtaaaa tatatctgcg gaaattctct
     3481 aacaagttca ttataagttt gttcatcagg agcaattacc aatcctctat cataaagaaa
     3541 atttaaaaca acctcatcac ctactttagg taaaacattt ggcaaaggca aagcatcttg
     3601 cttaagagct gagaaaatgc taaattctaa ttttgccaaa ccattttttt tatctataac
     3661 acttgctcta gcgatgatac tttgcgaatt gctaaaatgt tgtactacta cgccacttga
     3721 ataaagtttt atatcatcac tatctttaat ataaccataa atatcatcaa cttttacaag
     3781 ttcacttttt ataggtttta aatcaaatcc aaccgcaaag aggctaaggt ttaaagctaa
     3841 aaaacacact atagttttaa acaaatttgc tccttaaata aaaatttata gaattataat
     3901 ccttttttgt taagcaattg taagaaaaat aaagtaaaat atagctttca aatttcaaaa
     3961 ttcttttaaa aattaaggtc atctcatgaa aaaattattg cttttattta tttttgttgt
     4021 tcaaagtttt gcagctttaa gtgttgaaga gctaacttgg gataatggag ataccttact
     4081 taaattctta caaagaaatt ccatacctat gtcactttat tatggacttg atagagaaga
     4141 tcaagaactt gcttctgata tagcctataa aataaaatat caagttttaa aagatgaaaa
     4201 caacaacata gaacaagttt taattccaat tagtgatgat ttacaaattc atatctataa
     4261 agataaagat ggacaataca ctcttgcttt tactcctgta tcttatcaaa aagaagatag
     4321 aattttacat ttaaccatta aaagttctgc ctatcaagat gtctatgagg aaagtggtag
     4381 cagtacttta gctcgtgcta tggttcgtgc ttttcgagga agtataaatt ttcgcaatat
     4441 ccaaaaaggt gatgaagtaa ccctatatta tgaacaaaaa agacgcatgg gtaaactttg
     4501 gggtgatata aatataaaaa tggcaatggt agaaatcaat aaaagcgcta gagaagtctt
     4561 ttcttataat gatatattct atgatcgcga tggtaaagaa ttagaatctt ttttacttac
     4621 aaaacctgtg aactacacta gaatttcctc tccttttaca acagcaagat atcatcctat
     4681 attaaaacgc tatcgtgctc atcttggtat agactatgct gcacctactg gaactcctgt
     4741 gaaaagtgct ggcaaaggag tagtaacctt tataggcaca aaaggtggtt atggaaatgt
     4801 aattcaaatc aagcatgact caggttatat gactttatat gctcatctta gtcgttttgc
     4861 aaaaattaaa aacggacaaa aggtaaatca aggacaagta attgcatatg ttggttcaac
     4921 aggtatgagc acaggtcctc atttgcattt tggagtatat ttaaataata aagctataaa
     4981 tcctgcatct gttgtaaaaa tcgccaaatc agaacttagt ggaaaaacga aagagaattt
     5041 taaacatatc atagctggat acgagcaggt tgttaaagaa gccctagcct cgaatcaacc
     5101 taatcctcca aaagaagaag attttgaaaa ctatatagaa ttttaattac tcaataacgc
     5161 tttatctttt gcattgatta aagaatgtag aagagttgca agctcttctt tttctttttc
     5221 attaatttca caaaaatctg catcaatcaa ttgtttcacc aaagcttcat ttaacaaatc
     5281 tccatcgcca aattctctag ctttttgaat gatttttaac acccttaaat cttttctttc
     5341 atacatttta atcctttaaa taaaccacac tcacaaaacg cttagtcgtt ttatcacgac
     5401 gataagaaaa aaaactctca tcatcaaagc tacaaattcc acaatcttta atattttcaa
     5461 tgcctaaatt ttgcgcttga aattttacta aagcttttaa atcaagttta tcatcttgaa
     5521 caaattcttt aaattctttt ttagcaaatt ctaaaatttc tccatctatt tcataatttt
     5581 tagcacaaat tccaggcagg ataaaaagat gaaatttatt cttatctaaa tgtgaatttt
     5641 gcatagtaat ttgatcaaca cattctttta ggatattttc aaagcttcct tttctacctg
     5701 aatgcaaagc tgctataata ccactttcat gatataaaat caaaggcaga caatccgcac
     5761 ttaaaacaca aagagcgata tttttttcct tgcttataag tccatcacaa ctgagatttt
     5821 ttaaattttc atcataaatg ataactttat gagaatgaat ttgatccata aaaacacatt
     5881 tttcaatatc tttaaaacct aaatgagaaa ataaattctc attatgaatt ttagctctaa
     5941 aaacattata atccttatca aaagcacaaa aaataccgac tttatcattt tctaataaag
     6001 ataagaaatt ctttcgactt cttcccatga taatcctttg tttttacctt gtaattgtgc
     6061 ataaatataa cgagcaagta aatcactttc tatattgatt tttctaccta cttgatagtc
     6121 tttaaaaagc gtttctttaa aggtaatagg aataatagta agcctaatac cattttttaa
     6181 aatttcattg atagtaagac ttactccatc aacagctata cttccttttt ctgccataaa
     6241 tttcatagct tctttgggta aagatatatg aaaatctact ccattttcat ctttttgaat
     6301 cttttcaagt gtgccgataa aatcaatatg tccttgcata agatgtccat cgattctatc
     6361 gccatatctt aaagcaggtt ctatatgaac tttatctttt aaattctcta tagccatatg
     6421 agtgcgactt tcacgagaaa gctccacttc aaaacccgct tcataaagtt ttgttacact
     6481 taaacaaact ccatttacgg ctatgctatc gccaagattt gggcgatatt ttgcttttaa
     6541 gcttaaagta ttgttttgat aagattgaac tttagcaatt tctcttatga gtccattaaa
     6601 cattttttac cttaaaaaat cttatttaat aatttattca ccgctttatc aactttatcg
     6661 ccagtacttt tagcaccgtc actcacaccg ccacccacta catttttaat agaatttaac
     6721 acgcttcctg catttaaatt tactttagga ttttccgtag ttcctgtaat acttccttta
     6781 aaattagctc tatcgagttt aatatcaaaa ggcaaattta aagccccgct tttagaattt
     6841 aaagctcctg attgtactaa aatataagaa cgatctgctt gcatattaag attaagcttg
     6901 atattttctt ttttaatcaa agctttagca ttagcagtgc gataaacatc attggtaata
     6961 tcttttagtg ttaaaatttt taaagcattg gtaataagat ttggttttaa tttaccctct
     7021 ttcatatcca aattaacctc gccttcttcg cttaaaagat tgtaatttgc cttcatgtcc
     7081 gccttacctt gataaatatc cataaaatcc aaaccctgag ctagactact taaatccact
     7141 ccgtttaaat cagcaagtaa aaggttatct ttaaatgtgc tttgaagttt tccttcaaat
     7201 aaatttggac tatttacaac aaaatttaaa ctcttatcaa aacctacctt tccattaaat
     7261 tctgccttac ctttaagttt tctatctaac aaaaagccta gttttgaaaa atcatttatc
     7321 tttaaattaa aatccgaatt taaaagcatc ttacttatat caaaacttcc ttgtagtttt
     7381 gtaagatcag ctaaagatga atttaaaaca gaatcaaatt gagcgatatt gtttttaaaa
     7441 ttaattttgg tatttaaatc ataacttgta ttgtttggaa aatttttatt taaaatttta
     7501 cttaaagttg cagcatttaa aataccctta gcttctaaat ttgctttacc attaagattg
     7561 ttaaaatcga tattatctaa attaactttt gcattaacaa tcccactggc ataatttggc
     7621 atacctgtta taacaaaaag tttagataaa tcaagtttat caatgtttaa atcaagtttt
     7681 ttaccatttg aatcagcctt gattacacca tctgccaaat ttgcatttgc atttaaattt
     7741 tgtacttgag tgcctataat atgagctttt gcagtaagat ctgccttacc ttgtaatttt
     7801 tgtcctgcta tagcactaaa ctgagacaag tcatcaataa aagcatttaa atctgtattt
     7861 aactcactat tttttaaatt ataagttcct tgaagttttt tgatattaag taaatttgaa
     7921 gcaagtaaag cattgtaaga aatattacta ttttttgcat ttgctttagc atcaagacta
     7981 aaaattgtat ttggaagtcc tattttagca atttttttaa gctcattggt gttaatcttt
     8041 gcattgttta tttttgcctc aagatcgaaa ttagaaaaat ccaaatccgc atttaaaagt
     8101 ttagcattta aatttccaga aactaaagct ccatatcctg caagagctaa taatttttcc
     8161 aaacttgctt cattaatatc tgcaaaaatt ttattatttt tcaaacttgc ctttacctct
     8221 ccaccaagtc cgataacttg agcatttaaa cttgataagg cattatttac aacacttgtt
     8281 tgacctatca catccaaact accatttagt ctagtttttg taagtttttc aagctttaca
     8341 agagaaggaa tacttaaatt aaaatcagtg cttaaagcat tcttgctaat atcataaaga
     8401 gttttttggg tttgtaagtt aagataatca ttgtaaattt tacttacagc ataaatctta
     8461 tcttctttaa cattggccaa aatttctgct ttaggattag aatttaaagg caagtctaaa
     8521 gaaaaatctt tttttatcgc ctcatagttt atataacttg tatcaagttt tatgatgata
     8581 tttccatcag gttttaaatt ctgtgctgaa atttttgctt gagcatttaa aaaaccttta
     8641 gcgtaactag ggtaagataa aagatgaagt atttcttcta tcttaagatt ttgcgcatct
     8701 aaatttaaag caatagggct gtaattatac attcttgcat ttaaaagtac atttgaacct
     8761 agtaaataac cctttccatc taaagtaaaa tcacttgctt taccttgaat cttaccacca
     8821 aaagaaaggt tttgatttaa atttaaacct aaatttttag cataattttg atttaaagaa
     8881 ataagatagt caagatcaaa tccaagctta aaaggactca aagctccctt aagattaaaa
     8941 tctgccatat ttgcgatatt tgcttgcaat tcaagatttg aaaaacgtaa attaaaatgc
     9001 gtgatattta catctaatcc cgcactttct ttaatctttt tttgcgctat atttgccact
     9061 atattattac caaaacttgt gaaaagtatg gtataaatag caatcaaaag cacaacaaca
     9121 aaagctataa ctccataaaa aatctttttc atttttatcc tttagtttat tt
//
LOCUS       DARGEX010000063         8893 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.063, whole genome shotgun sequence.
ACCESSION   DARGEX010000063 DARGEX010000000
VERSION     DARGEX010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8893
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.063"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            131..2221
                     /locus_tag="SF010_001220"
     CDS             131..2221
                     /locus_tag="SF010_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG8230145.1"
                     /translation="MKIFKIIFLIIGIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKTITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     GMALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPGLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2218..2757
                     /locus_tag="SF010_001221"
     CDS             2218..2757
                     /locus_tag="SF010_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG8230146.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2840..4243
                     /locus_tag="SF010_001222"
     CDS             2840..4243
                     /locus_tag="SF010_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8230147.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGIAYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4230..5522
                     /locus_tag="SF010_001223"
     CDS             4230..5522
                     /locus_tag="SF010_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8230148.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVDSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5512..6630
                     /locus_tag="SF010_001224"
     CDS             5512..6630
                     /locus_tag="SF010_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8230149.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            6627..7280
                     /locus_tag="SF010_001225"
     CDS             6627..7280
                     /locus_tag="SF010_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8230150.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7277..7765
                     /locus_tag="SF010_001226"
     CDS             7277..7765
                     /locus_tag="SF010_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8230151.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            7726..8229
                     /gene="traF"
                     /locus_tag="SF010_001227"
     CDS             7726..8229
                     /gene="traF"
                     /locus_tag="SF010_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG8230152.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8239..8676)
                     /locus_tag="SF010_001228"
     CDS             complement(8239..8676)
                     /locus_tag="SF010_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG8230153.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SALGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         3120 a         1328 c         1428 g         3017 t
ORIGIN      
        1 aatttaataa aaaaatatta tcaacataaa agcttatttt ttagttctat ttaagatttt
       61 tagtattata ctagccatta tttattttga taataaatat tatttttatc aaaaatcaag
      121 gataatgata atgaaaattt ttaaaattat atttttaatt ataggtattt ttttatcaag
      181 ctcagctttt gctagggtag atgattatat taatgaagca aatcttatca aagatatgct
      241 aaaacaaagc atagaaactt ataaaaaggg cgataatcta ggcgccaaaa agcttagcga
      301 agatgcgtat tttcaacatt ttgaaaatat ggaaggccca ataggaagaa acataggaag
      361 aaaaactatc actatggaac gtaaatttgt aaatttgcgt cgcatgtata aagatgaagc
      421 tcctttaaca caaattaatg ctttaattga tagtctttat tatgatcttg atgaagtagc
      481 tccgatttta caaaatggat atcgtttaaa agcagaagca agcgatataa actatgataa
      541 ggctaaagct gaaaaatcaa gcctagaagc caatgccaaa cgcgaagctg atgcagaagc
      601 tttaatcgca caaatgatgg gtgtagataa aaaagattta gcacaaagct ctttaaccac
      661 ccaagctcct atacctgtaa ataatgatac aagcaaactt atagatgata atgcaagcac
      721 tgatttacaa gctgccgctg caatggacgt aagattgcaa tttatactag ataatatctc
      781 taccaaattt tcacaggcag ctaatgcttt taaagaaaaa aactaccaaa ctagtaaaga
      841 ttttttaaat gatgccttat ttagtgatta tcgcaatacc aaagtagaaa ttttagtaaa
      901 taaatttacc aaagcaggaa acgatcaaaa aattcaacaa gccatacgca cccttatacg
      961 ccaaatcaac gatgcaaaaa tagatgaaaa aggcttaaga gatggcttag ataacataga
     1021 agaacaaatt tttgatgttt tcttacaaat tccaaattca gaactttcaa gtttgcaaat
     1081 ttcaggcttt aatgatgaaa caaaaggcaa agattatgcc aaagtttcta atgatatcaa
     1141 acttgcttta gatgaaattt taaaaaatta tgatggcttt agcacttcta tggtagatga
     1201 tttacaagga atttatctag atatttttga agcaagcggt atggaaaata aaatcggtgc
     1261 tgtagatagt ggcttaaaac ttaaaataga aagtttattt tccaaaggca tggcactgat
     1321 taaagcaagt gcagataaaa aagagcttga agctactttt aatgacttag aacaactcat
     1381 agccagcagc gtggataaaa ttcaagattc tactccttat tcgctgttta tatgggcttt
     1441 aggtattatt ttgcgtgaag gcttggaagc tttgattatc attgtagcca ttgtttctta
     1501 tcttgtgcaa agtggcaaca aaaatcgtct aaatatcgcc tatagtgctc tttttacagg
     1561 agtgatttta agttttatta ccgcttttgg agtttcttgg ctatttaaag aaaatgcagg
     1621 tcaaagtaga gagcttatag aaggtattac catgcttata gccgtattac tactctttta
     1681 tgtgggcttt tggctacttt caaacgcaca aaataaaaaa tggacaagct ttatcaaaca
     1741 aggtgctata gatgctatat caaataatag cgcaaaaacc ctttggatta ccgtattttt
     1801 agctgtttat agagaaggtg cagaaactgt gcttttttat caagccttgc tttttgatgc
     1861 taaaacaagc actgattttg gtgctgtttt tggcggactt ggacttggaa ttttaatact
     1921 tattgtttta tattttcttt taaaagcagg agccattcgc atacctgtaa aacaattttt
     1981 ctatatcact tcttacatta ttttttacat ggtttttgtt tttacaggca aaggcatagc
     2041 cgaactcata gaaggaaaag tcatcattcc tggtcttata cctatgaatt ttgaaccgat
     2101 tttatggctt ggaatttatc cttactatga aactttaatc cctcaattta tagttttaat
     2161 tatgctaatt attggcattt taataacaaa acaaatttca aaaaaaggag taaaatcatg
     2221 ataaaaaaag ttttatcagt agttgctgca gctgcggtta ttagtacaaa tttatttgcg
     2281 ggcgaagtgc cgatcggcga tccaaaagaa cttaatggca tggaaatagc cgctgtttat
     2341 ttacaaccta ttgaaatgga gccaagaggt attgatttag ctgcatcttt agcagatatt
     2401 cacctagaag ctgacattca cgcacttaaa aacaatccaa atggttttcc agaaggtttt
     2461 tggatgcctt atttaactat agcttatgaa cttaaaaata ccgacacagg tgcaattaaa
     2521 cgtggaactt tgatgcctat ggtggctgat gatggtcctc actatggtgc aaatattgct
     2581 atggaaaaag ataaaaaagg tggctttggc gtaggaaatt atgaacttac tttttatatc
     2641 tcaaatccag aaaaacaagg ttttggacgc catgttgatg aagaaacagg tgtgggtaag
     2701 tggtttgaac cttttaaagt agattataaa ttcaaataca caggcacgcc aaaataattt
     2761 tacgctcgga ttttccgagt gtttgaatat ttttattttt atttgaaaaa ttaaaataaa
     2821 aatgtttaaa gagtaaatta tgagtatata ttttgtgcat tttcttatca gtgttttacc
     2881 gctaagtatt ttaatggcct ttatcactcc taataaaaaa tatattttta aaagtttttt
     2941 agtagttttt ttgggctttt tatttggata ttttgctttt tttatcgcag cacaattttt
     3001 aaaaaccgaa aatttaatct ttaattttga ttttgttttt ataggtttat tgctagtaag
     3061 ctttatattt tatttttgga aaaaaattga aattttaaat tttattttat tgggaatttt
     3121 aagtttttgc accgctttgc attattattt tttaagtcaa gatttcccta tttttactag
     3181 ctctttaatc gatagcgaag gtataagttc tttaggtttt attgctttag ccttgcttgt
     3241 ttgtattttg attttcttct ttttaaaatg gcaaaaaaat tttaatcaaa aaacaagctt
     3301 tatgctgttt ttactgctta tccttataga aagcgataaa gctctagcca atatcttgct
     3361 tactttaatg cgaaattcca tcatagaaac tcatgctttt ttggtgagtt ttgtaggaaa
     3421 aagtaattat tttggtgttt ttggaattta tgtttattta attttcatca cttttttagc
     3481 attcttaagc ttaaaaattc gcaaaaaaaa tataagcaaa aaacaaattt tagatataaa
     3541 ttatcgcaaa aacgaagcta aaacaagtct tattaatcgc tatttttcca gtgtttttat
     3601 ctcctgtgtt ataagttttt gcattgtttt atactttttt atggtaagct ctaagccttt
     3661 aaccatagat gagcctaaag aaattttacc cgataagaat ggcaaattta tctttgatat
     3721 agctctttta agggataaca aactccaccg ctttgcttat atcagtgctg aaggcaaagt
     3781 gataaggttt tttcttatca acaaaagaga agataaggat tctcctgtag ctgtttttga
     3841 tgcttgtatg atttgtggag atatgggcta tatcaaaaaa gatggacaac tcatttgcat
     3901 ttcttgcaat gtgcgtattt tcttgccaag tgtaggtaaa agcgggggtt gcaatcctat
     3961 cccactcaaa tacgaatacg atggtaaaaa aatcaccata gatgttaaag atgtaatagc
     4021 aggatctaat tattttagtc aaatcaaaga aattgaagtg caagatcctg tatcaaaaac
     4081 aaaggttata aacacccaag ctcctttttc ttatagctat aaagggattg cttattattt
     4141 ttcaaatcaa aacaactatg aagaatttaa aaaagatcct acaaaatatg tagaagaaaa
     4201 cgaagcccaa tttttaatcc aaaggagaaa tgatgttggc taaaatgatt tttaactcta
     4261 tatttaaaaa caaaattcaa aaatttttag cctttcttac ttgtttttta gccacgcttt
     4321 tgctctctac tatgctaaat attaccctaa gtataggtga tgaagtaact aaacaactca
     4381 aaagctatgg ctctaatatc cttgttttac ccaaaggctc aagccttagt atagaaatag
     4441 gtaatgaact ttatgaaccc ttaaaaaaca aaaactatct agaagaaaaa aatttatata
     4501 tgattaaaga catttattgg cgtaacaaca tcaccgcact tgctcctttt ttggaaggta
     4561 aaatcacaat tgaaaactcc caacaaaaag cacttattta tggtacttat tttcaaaaag
     4621 ccataaaaat taaagatgat gatgatttta tcacaggtat aaaaagtctt tatccttatt
     4681 tagcagtgca aggagaatgg gcaaaagatg atagtaatga aatcatgcta ggcgaagact
     4741 ttgctaaaaa caataaacta aaattaggag atactatcaa actcatagga gaaaacaatc
     4801 aaagcaaaga agcaaaaatc gtaggcattt tacttcatgc caatcctaaa atgtcaaata
     4861 aaatcatcgc tcctttaaat ttagctcaag atttactcaa caaacaaggg ctttactcaa
     4921 gtgcagaagt aagagctttt accatacctg aatcagccct ttctgaaaaa gtacgtcgca
     4981 tgggcgaaga aaaattagat cagttagaat atgacaaatg gtattgctca gcttatgtag
     5041 actcaatcgc tagtcaaatt agcgatggct tgccaggtgc tgatgcaaaa gctctaaatg
     5101 ctataagcga tgctcaaagc ttggtggtta aaaagatcca atccttaatg ggcattactt
     5161 gcattatttg tcttattgtt gcaagtattg cgatttcaag tctaatgagt tctgaaattc
     5221 atcgtagaaa aaaagaaata ggacttttaa aagtacttgg tgctaatact tttcaaattt
     5281 atctcatctt tgctagtgaa aatttaatcg tagctttatt tgctgcttta tttggattta
     5341 tttttggcac agcactttct caaatcatca gtcttagtat ttttggatat tttattgata
     5401 tagcctttgt agctttacct ttaagcttta tttttgcagg acttattgcc ttacttggtt
     5461 gcttgcttcc tatcaaaaat atcacacaac tttcagctgc aggagtgctt tatggtagat
     5521 aagtttttcc tcaatgagct ttttaaaagc attagctttt cttatcaaag actttttatt
     5581 atagttttaa gtgtttttat aggagcactt acttgctcag cttttttaaa tatttatttt
     5641 gatatcgaca tcaaactttc taaagaatta aaagcttatg gagcaaatgt aatgataagt
     5701 cccaagcagg atgaaaattt tatctccaat actgagtatg aaaaaataaa agaaaattta
     5761 aaggctagag ctttaactcc ttttttgtat gattttttaa atttaggcag tacaagcggg
     5821 gtggttttag gcactgattt tagggcttta aaaatcacta aacctttttt agaagttaaa
     5881 gaaggaagct tttctctaaa tgattttgat gaaaattcag cctttttagg agttaattta
     5941 gccaagcaac taggcctaaa agcaggcaat gaacttcaaa tttataatcc aaacaacgga
     6001 aaaagcataa aacttaccat aaaaggcata ctttcaagca atgatgaatt tgatagcatt
     6061 gttttagccc ctttaagcgt ggtgcaaaat ttaagcgata gagccggtat taactatgct
     6121 aatgctgtag tttatggaaa ttttgatgaa gttaaagcca aaacacaagc aatcagcaat
     6181 gaattcatcg atgcaaaacc tatatcttca gtatccttaa gtgaaggttt agtgcttgga
     6241 aaaatcaaag ctttaatgtt tttaatcata cttgtggtat tgatcatagt tactactagt
     6301 gttaatacaa ctttaagttc tattatattt tctcgcaaaa aagaaatcgc actgcgttta
     6361 gccttgggtg cgaaaaaaag tgaaattttt aaactttttg ctagtgaatg ctttatagta
     6421 agtttttttg ctagtttaat cggagctttt tgtgggatat ttttagccaa tgtctttggt
     6481 tatttaattt ttaattctag tattgatttt agatttatag ctgtttttat agccttaatc
     6541 atttctttga tttttgcctt tttggctgca ttttttccta taaaaagagc attaaaaatc
     6601 aatgtgtgtg aaaatttgaa aggtgaatga tgaaaaaaga acttattaaa ataaacaatt
     6661 taaataaaga atttggcaaa gttaaagcct taaacaatat caacttaagc gtctatgaag
     6721 gagaatggct tgccatcatg ggtccatcag gaagtggaaa atcaacactt ttaaacatac
     6781 tatcgctcat ggatactcca agctctggag agtatatctt ggataatgaa aacctagagc
     6841 aaatggatga agagcaaaaa atcaccttgc gtcgtgaaaa aatagggctt gtctttcaac
     6901 aatttcatct tatcccctat cttaacgcct tagaaaatgt tatgctctct cagtattatc
     6961 actcaagtgt agatgaagaa gatgccaaaa tggttcttga aaaagtagga ctttcgcata
     7021 gactcactca tttacctagc caattaagtg gcggagaaca acaaagagtt tgtatagcaa
     7081 gagctttaat caacaaccca gagcttttac tcgcagatga acccacagga aatttagatg
     7141 aagccaatga acaaatcgtt cttcaaacct tgcaaaaatt aaaaaatgaa ggtaaaacca
     7201 tagttttaat cacacacaat cctgatttag ccaaattcgc agatcgaacc cttatcttac
     7261 aacatggggt gttaaaatga aaaaaagcct tttaatctta agtattttgt ttttactcaa
     7321 tgcttgttct tttgaaaatt caaaagatac tggaaaagtt ggagaaaaaa gcgctgaaat
     7381 ttcagctaaa gatactttag gaaaagctgt aaaacttgct gatgataata caagtttaaa
     7441 agtcttagtc ttttttcaaa atggctgccc ttcttgctta aaagaactcc cttctttaga
     7501 tgaattcata caaaatcacc ccaataaaat cagtgtttat gctataaatt ccatcgataa
     7561 tgccaatgtg gttaaggttt tagccgaaca atttgacttt aaaaatgtaa aagttttaaa
     7621 agacgatctt aaaatcacca atgatcgtta cgctgtgttt gcaaccccta ctaccatcat
     7681 cattaaagat gggatgataa aagatagaat tttaggagaa aaaccatggg aatttttcga
     7741 atccaagctt atttctttgc tttaatcata gctttatttt ttgtagcttg tgatagtgga
     7801 gaaaatttta aagctttaaa tagcgataaa acctataatt ttgcctacaa tggttttgaa
     7861 aaaagcctaa aactaaatga taaagcacaa aattttgcct tagtattttt cacaaaagat
     7921 tgcggagttt gcaaagaaca aattcctatt ttacagaatt tggctaaaaa ttatgatttt
     7981 aatatctttg tggttttagg cgatgcaaac gatgcaaacg atgcaaaagc ttgggctgat
     8041 gaaaaaggtt tatctaattt agcaatgttt tatgaaaaaa gagcagctaa atacctttca
     8101 agtgccattg gggaaatata tggagtacct gtgcttagtt ttttcaaaga aggaaaaatg
     8161 gatgaaaaat tcataggctt aactccttat agcatacttg aaaaagaaat caaaaaagta
     8221 aaaagctaaa aatttacttt aaagcttttt atcccctata aaatatccat aaagctcata
     8281 gcttccatct tttttcatca aaattacagg atatttttca ctataacctt gttccattcc
     8341 tggacttcct tgcggcatgc caagagctga aattcctata acatctttag gtttgttttc
     8401 aagcaaccat gctatagcac tttcaggaac atgcccttca atagcatagc cttcaatcac
     8461 acctgtatgg caactttgat actcatcttt tatacccatt ttttctttga ttttaagaaa
     8521 atcattggtt ttatgaacac taacctcata acccttagct ttcatataat cagcccaaag
     8581 atcacaacag ccacaagtag gactttcata aatttgtatt tccttagcct gcgtaagagt
     8641 gagtaaaaaa agaatggtta aaattgtttt tttcataatt gctatcctaa gtaaaaaata
     8701 tataataata cttttataaa gttaatatca tcacattttt aacactaaaa atgaatttac
     8761 aaaaatttaa tcaagaaaag acttttaatg agtgttgatt ttgtctttgc agcaaagata
     8821 taaaagataa aacgatttaa aaaactagaa atttttaact taaaaagctt aaaatttaga
     8881 tatattttat act
//
LOCUS       DARGEX010000064         8736 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.064, whole genome shotgun sequence.
ACCESSION   DARGEX010000064 DARGEX010000000
VERSION     DARGEX010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.064"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(128..1571)
                     /gene="aldA"
                     /locus_tag="SF010_001229"
                     /pseudo
     CDS             complement(128..1571)
                     /gene="aldA"
                     /locus_tag="SF010_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            complement(1585..1902)
                     /locus_tag="SF010_001230"
     CDS             complement(1585..1902)
                     /locus_tag="SF010_001230"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEG8230154.1"
                     /translation="MQRYGQIIKIKKEKIQKYKNLHAKPYERVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDENTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            complement(1903..2673)
                     /locus_tag="SF010_001231"
     CDS             complement(1903..2673)
                     /locus_tag="SF010_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEG8230155.1"
                     /translation="MQKIFDAHLHLWDLGKIPISWMKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEILFALEQKKLHNLLLCLADLKHKEKLNSFREVMHVSKKGA
                     KRLFEVDFEEKIEILKTFNIPFEACMKNEELSFLENFLNKNSNLKVVLNHLGSPKINR
                     LNEYKKDLNLLKKFPNLYIKLSTPDDFSQETPKEFIFELFAFLKENFSEDKFIFGSNY
                     PVSNLSPKQWIELIIQSKVFKDLDLIFYKNALSIYKGE"
     gene            complement(2657..3913)
                     /gene="fucP"
                     /locus_tag="SF010_001232"
     CDS             complement(2657..3913)
                     /gene="fucP"
                     /locus_tag="SF010_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEG8230156.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICLSLYFVSGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGTGYL
                     AIAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            complement(3924..4712)
                     /locus_tag="SF010_001233"
     CDS             complement(3924..4712)
                     /locus_tag="SF010_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8230157.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            complement(4713..5999)
                     /locus_tag="SF010_001234"
     CDS             complement(4713..5999)
                     /locus_tag="SF010_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230158.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            complement(6011..7177)
                     /locus_tag="SF010_001235"
     CDS             complement(6011..7177)
                     /locus_tag="SF010_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG8230159.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTKTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            complement(7180..7443)
                     /locus_tag="SF010_001236"
     CDS             complement(7180..7443)
                     /locus_tag="SF010_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG8230160.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            complement(7440..8348)
                     /locus_tag="SF010_001237"
     CDS             complement(7440..8348)
                     /locus_tag="SF010_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEG8230161.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            8578..>8736
                     /locus_tag="SF010_001238"
     CDS             8578..>8736
                     /locus_tag="SF010_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8230162.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSAIAKKLNIPAGTLWPILQTLQ
                     EKKYIKCDL"
BASE COUNT         2992 a         1712 c         1030 g         3002 t
ORIGIN      
        1 aaaatgaaaa attccaaaat tgattttaag aaattactaa aaaagtgttt aatccatagt
       61 tataaagcat catacttgat tccaagatta taataactcc tatctaaaaa tttagatagg
      121 ataaaaatca ttgtttatta gtattatact gcaaatatac cacatgggta gctaaatatt
      181 cttcaagacc atgttttcca tcagctccgc ctatgccact ttttctaaag cctgcatgaa
      241 aaccttgcat agcctcaaaa ttttcacgat taatataagt ttcaccaaat ttaatttctc
      301 tgctagctct cattgctata tctaaatttt gtgtataaat agaacttgta agaccatatt
      361 cacaatcatt tgccatatca atagcttcat caagtgtatc aaatttagca ataggcaaaa
      421 tgggagcaaa aatttctttt tgcataattt catcctcatg cttaacatta gtaagaacac
      481 ttgcaggaaa ataataccca cttgtatcag tgatttttcc accgcattcc acaactgctc
      541 ctttagctgt agctctttga agcattgcta aagcattatc aacccctgct tgattgacca
      601 atggtcccat atcaaaatca ccttttaagg tatttccaac acttacctta ctcatggctt
      661 ttacaaattt atctacaaat tcatcataaa tgcttgtatg cacataagct ctttcggcac
      721 aattacaaac ctgtccatta ttgcaaattc gacttgcctt aatcgcttct actgccaaat
      781 caatatccgc atctttacac actatagcag gagcttttcc gccaagttct aaagaaacct
      841 ttatgatatt tttagctgca gcttccatta ctctagcccc tgcttcaaca cttcctgtaa
      901 gacttaccat gcctatattt tcattgcttg ataattcata tcctactaca ctacctttac
      961 ctgcaaccaa attaaacaca ccttttggta aagaactttg cgaaacaagt tttgcaaatt
     1021 caaaagcatt gtttggagtt tcactacttg gctttatcac tatggtattt cctgttagta
     1081 aagcaggtgc catcttcctt gcgattaaga aaaatggaaa attccaaggt aaaattccac
     1141 caattacccc aatagcactt ttatatatat aaatatatat gctcattagc tctatcgctt
     1201 tgtatgattt caccttcata tcttctagcc cattcggccg tataatccat ataatctgct
     1261 gcaaaattaa cctccacgct ggctaaagct ctagtttttc cttgctcttg cattaaaatt
     1321 tctgttaaga aattagcatt tttgcgtatt aaactagcta tttctcttaa atgatttgct
     1381 ctctcaattg ctggcttagt ctcccaggat ttttgtgctt ttttggctgc ttcaatcgct
     1441 cttttggcat cttctaaaga agcactcgct acttttgaaa ttacttcttt agtagctgga
     1501 tttaaaactt cgataaaatc cccattatgt gagataaatt ctccatcaat ataatttaaa
     1561 taagttgtca ttttttctcc ttttttagtc taagtgaaac acttcttcca tatttagcca
     1621 cttttgtcct gcataaccta aagatatttg acaaggatct gttactttcc accatttttg
     1681 cgtgttttca tctcttgcca tcttagccat atctgcttca aaatcagcac ccacatattc
     1741 aaaatatgca aataaatatt ctccaaacaa ataaatggaa taattttgta tattacattc
     1801 tttaatcatc tcacaaaccc tttcataagg ctttgcatga agatttttat atttttgtat
     1861 cttctctttt tttatcttta tgatttgacc gtatctttgc attcattctc ctttataaat
     1921 tgataaagca tttttataaa atatcaagtc caaatcttta aaaaccttac tttgtataat
     1981 caactcaatc cattgctttg gagacaaatt agacactgga taattactgc caaatataaa
     2041 cttatcctcg ctaaaatttt cttttaaaaa agcaaaaagt tcaaaaataa attccttagg
     2101 agtttcttgt gaaaaatcat caggagtaga aagcttgata tataaatttg gaaatttttt
     2161 caaaagattt aaatcttttt tgtattcatt taaacgattt atttttggac ttcctagatg
     2221 atttaaaact acttttaaat ttgaattttt atttaaaaaa ttttccaaaa aactgagttc
     2281 ttcatttttc atacaagctt caaaaggtat attaaaagtt tttaaaattt ctattttttc
     2341 ttcaaaatct acttcaaaca atcttttagc tccttttttg cttacatgca ttacttctct
     2401 aaaagaatta agtttttctt tatgttttaa atctgctaga caaagcaaaa gattatgaag
     2461 ctttttttgt tccaaagcaa acaagatttc cttttccaaa tcatcactat taacctcaac
     2521 atacatagca cctataaatt caaattcttt atattcttgt ttcatcctaa aaaaatcata
     2581 attttgctct aatttttcat cgtctttcat ccatgaaata ggtatttttc ccaaatccca
     2641 aaggtgcaga tgagcatcaa aaatcttttg cattttttct cacttttgaa cctataaagc
     2701 cataccaagc cacatataaa aacaaaggtg cgattgctaa atacccagtg cctgtaccat
     2761 aatgatcatt aataaagcct ataattatag gcataatcgc tccacctact atactcatca
     2821 caagcaaaga tccgcctagt tttacttgat ttaaaggtaa attttttgtt gctaccgcaa
     2881 aaatagtagg aaaagaaata gacataaaga aaaataaagc tattaaaagc actatgctaa
     2941 aaaacccgct aacaaaatat aaactaagac atataagcac attgattaga gaataaaatc
     3001 ctaaaatttt ttcacctttg attatcttca tcaaaggagt agaaacaatg cgtcctaaca
     3061 taaatgcaac caaagctata gaaaaataat aagcaccttg cgcatctttt aaaccttcat
     3121 tatgttccac aacataattg ataaaaaaag ctcctgctgc aacttgattg gctatataca
     3181 aaaactgtgc taaaagccct aagttaaaat gtctgtgttt aaaaacatat atgggcttag
     3241 aatcatcttt ttgcttataa tcatcactta ccgcacttcc ttctggaagc ttatttgcaa
     3301 caaaagcaat taaaatcaaa ataacaatga cagcaattcc tatataaaca agctggacat
     3361 ttcccatatt agctaccaat gcagcctcga tttgctcttt actcgcaccc tcttcttgtt
     3421 tagtaataga taaaaataaa gctccgccta taataggtcc tacaaattgc cccaaaccat
     3481 taaaactttg cgcagcattg attctaaaac tcgcattttt ttcatcacca agctttgtca
     3541 tgtagggatt tgcactagtt tctaaagaac caataccaca agctaaaata aaaaacgcaa
     3601 acaaaaacaa atgaaaagaa gccaaatttg tagcaggtat aataagcaaa gctcctatgg
     3661 cataaagagc taagccaaaa atgattccca ttttataaga aaatctattg gctatataac
     3721 ctgcgggtaa ggctatgata aaataagcac caaaataagc aaactgtaaa aaaccacttt
     3781 catgctggct aatatgaaga tgattttgaa aatttttatt catcacatca ataagtccat
     3841 agcttactcc ccataaaaag aaaagagaag ttaccaaaac aatagctatt tttatatttt
     3901 tagaatcagt cattttttac tccttagttt tcatcccaat ttaatgctct atctaaatgc
     3961 acataacctc catctggcat taaaatttgc cctgtagtat gtgaagcaag gggactaagt
     4021 gtaaaaaccg ctgtatttgc aatttcctct atggtagtaa aacgatggcc taaaggtata
     4081 gcttttgcga ttttttcata ttgctcttta ggattaggaa aattttgcag ccatttttca
     4141 taaagaggag tcataacttc agcaggagct atagcattta ccctaacatt atccttagca
     4201 aaagcacaag cccattctct agtaaaaccc atttgagccg ctttggccga agcataagct
     4261 gaagttcttc cttgtcctgt gatgcctgtt ttactcacta tatttaaaat actgccttgt
     4321 tcttttttaa tgtaaggcaa acattctttg gtcatagtat aataatgaaa aagattattt
     4381 tcataagatt ttatcaaatc ttgagtactt gtattttcaa tatgtaaatt atcatttgta
     4441 cctgcattat ttacaagagc atagattcca ccatgtttga tagcaacttt ttttacaagc
     4501 ttttcaattt gctcataatt ttttaaatca atttcataaa attcatactc actagataat
     4561 ttttttaatt ctttatcgtg ctctttaggc atagatcttg aaaaaattac aggaattccg
     4621 ccttcgcttg cccataattt agcaatacca tacccaatac ctttagcccc tcctgtaata
     4681 atacaaacct tatttttaat ttttaaatcc atttattctc ctttatctaa atttaaagtt
     4741 atttttaaat gtattaatac caatacacct aaaattgcta tcaatgctaa cactataagt
     4801 ccaaactcaa ctccaaaatg attttctata tatgttttta aagtaggagc tacaaaacct
     4861 cctaaatttc ccaaggatcc tataagagca atagcagccg cggctccttt tccttttaaa
     4921 acttgagttg gcaaattcca aaatataggc tgaatgacta taaaacctat agcagccaag
     4981 ctaataaaaa ataaaaatgc cgccaaattt gtaacaaaag ttgaagctat catgctcaaa
     5041 cttgctagca gtaaaaataa aatcgcatgt aaattccaag aatgtttttt atcagccaat
     5101 gaggtaaata ttggcaaggc gataaaaaca aaaatccaag gtatggcatt taaaagtcca
     5161 acttcaaaac ctacatttat ttgcaatatt tgggcaattt tacttggtaa ataaaaaagc
     5221 actccataaa cacttaattg aatacaaaaa taaacaaata caaatttcca caccaaaata
     5281 cttttaaaaa tatcttttat agaataatcc ttagctttag tattggaaat ttcaatatgt
     5341 tttagcaaaa tatctttttc ttttatatct aaccattttg catcttttgg atgtgaatca
     5401 agataaaata aacaaaaaat acctactaaa acggtaatac ctccttctat taaaaacatc
     5461 cattgccaat ttttaaaata tatatttggt gtataatcaa gtataaaacc gctaattaaa
     5521 gaaccaaaaa caaaagcaat tggaactccc atttgataaa ttccataagc ttttgatcga
     5581 tatatagctg ggaaaaaata actaaggtat aaaataatgc ctggactaaa acctgcttca
     5641 gttaaaccca ataaaaatct taatacataa aaacttattt ctccttgtat aaaaatcatt
     5701 gccatagtta caagtcccca agtgatcatt atgcgactta accaaatttt tgctcctaat
     5761 ttatgcaaaa ataaatttga aggcacttca aaaatggcat aacctataaa aaatattcca
     5821 gcacccaaag cataagcagc ctcaccgatg cctgcatcaa tttctatatg agatttcaca
     5881 aagctaatat ttgtcctatc aagcatagaa agacaaaaca tcaaaacaat caaaggcaaa
     5941 atacgccaag atattttttt acatactaac tctaacttta ttgaatttgc atgtttcatc
     6001 actttaccct ttaacaagtt gtagcaagtc tccaaactga aaaatcattt tgctcgttaa
     6061 gctcggcttt taccaattct ccatctgaaa ttcgcacgat taattctata agctcatcac
     6121 gcacttcttc ttttgttttt accccatcta taatgcttcc tgcgttaata tcaatagcat
     6181 cattcatatt ttcataacaa aaagtattag aactcatttt gatagtaggc acgatagcag
     6241 aacccgttgg agtgccacga cctgtagtaa aaacacaaat atttgctcca cctgcaacca
     6301 tagcactaag ttgttctata tcattgcctg gtgtattcat aaaagttaaa cctttagaaa
     6361 ctacaggctt agcataatca atcacatcca ttaaggtttt agttcctgcc ttataaacac
     6421 agcctaaaga tttttcctct atagtactaa gcccgcctgc catatttcct gggctaggat
     6481 ttgctcctcg aatatcagca tgaaaagatt tgactaaatt ctcataagct aaaatcttat
     6541 catatacctt tttagctatt tcatcgtttt ttgctctctt agctagtatg gcttcacaac
     6601 ctataagttc tgtagtttct gctaaaatta ccgcaccacc ctcatcgatt acaaaatcac
     6661 tcaaacttcc taaagcagga ttagcactaa gtccgctata gctatcactt ccaccgcatt
     6721 ctgtgcctaa aatcaaatca ctgaaatctc cttcactttt ttgtaatttt gcagcacttt
     6781 caagcatttc attgactatt ttgataccat tttcaatggt atttttacta ccaccacatt
     6841 cttgtatcac taaatattca acctttttat aaggcgttgc ttctttgatt ttttctgcta
     6901 ctgctttggc ttgtattacc tcacaaccaa gccctataat taaaacacca aaaacattgg
     6961 cattgctccc atgacctatt aaaacatctc tagtttgtaa agcatcaaat tcaagctggg
     7021 agcaaccatg ctgatggttg atataaactg ctccattaca ttttctagct atattttcac
     7081 acactttatt agcacaatgt acacttggta tgataatgac tttatttctt aagccaaatt
     7141 ttccatcttc ccttctataa cccattatct ttttcatttt cattccttat ctccacgacc
     7201 tctaattccc gcagtattat ggatatgcac ccattcccct gtactaatat cgcaacttgc
     7261 actagctata gcttctgcgt atttgataat aatttcatct ttttttatat cctttagtgc
     7321 aaatttatgt ccgcttgcaa tatcatttaa aagctcaata tttgccactt tttcgccttt
     7381 tttaaagtca cgcaaagctg tggcaacatt gtctttttca ttgactataa tatatccttt
     7441 catagtttta tacctgtttc tttttctata gttttaataa gctcttttgc ttcatcaaag
     7501 cgagtgttta attcttcttt tgtagcaggt gataaaggat gaatactagc atttacaaat
     7561 tcaaatcctc tggcctttaa aagcaaagca aaacccatag gaaaagctat gctcatacca
     7621 aatcttatgg cctttaataa acttttttgt attagcaaag ctctgcctat atttttttca
     7681 ttgattgatt tgtaaatttc gctcataagt tctggaaaaa ctccacctat gctagtcata
     7741 gaaccttttg cacctgctaa taatgcacct acataaaatt cttctcttcc tacaaaaaca
     7801 tcaaaattac taggtactac atctaaaata tgatttaaaa gcaaagcatc tccgctacta
     7861 tcttttatac ccacaacatt atcaagcttt gaaacctttt ctataaattt taagcttagt
     7921 gctggtgcaa aaagaggtat attataaaca tataagggaa gtttcacttc agaagctaaa
     7981 tattttacat attcaaaaag tgcatcttca ctcaatttat aataataagg catagcaagt
     8041 aataaggcat caagacctaa ttcataagct ttttgcgcca aaataaaagt gttttcataa
     8101 attgtcgagg taatacccgt gatgataggt atattatttt ttgtagcctt tttggtgagt
     8161 ttcattaact taacttgctc ttccacgctc aaagcttgag aatcccctgc acttccatta
     8221 caaaacaatc cgttcaagcc tttagaaata ccaaattcac aatagcgaat aaattctttt
     8281 tcattgatac ttccatcatc tttatatgga gtaagtaaag ccggtaaagt tccttttaaa
     8341 attcccattt ttttcctttc gtatatacaa aaatatattt atatacaaaa aatataacaa
     8401 aatatttgta aaaaaatcaa gctgttaact tggtaaaaat tcgtatttta ttcttattaa
     8461 ctgccaattt ttacaaaaaa atattaaaat taataaataa taaaaattat gattttatgt
     8521 tactaaaagt aaaaaatatg ctaaaattta taaaaataaa acaaggataa agacaatatg
     8581 catcagccca ctcttagagt gttaaatatt ctagaattac ttgcaaaaga aaagcttacc
     8641 ttaagtgcta tagctaaaaa attaaacatt cctgctggaa ctctttggcc tattttacaa
     8701 actcttcaag aaaaaaaata tatcaaatgt gattta
//
LOCUS       DARGEX010000065         8595 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.065, whole genome shotgun sequence.
ACCESSION   DARGEX010000065 DARGEX010000000
VERSION     DARGEX010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8595
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.065"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..170
                     /locus_tag="SF010_001239"
     CDS             <1..170
                     /locus_tag="SF010_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8230163.1"
                     /translation="KSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLV
                     ENFLKEWCGKK"
     gene            157..1059
                     /locus_tag="SF010_001240"
     CDS             157..1059
                     /locus_tag="SF010_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8230164.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            996..1391
                     /locus_tag="SF010_001241"
     CDS             996..1391
                     /locus_tag="SF010_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG8230165.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            1391..4327
                     /locus_tag="SF010_001242"
     CDS             1391..4327
                     /locus_tag="SF010_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8230166.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKI
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            4329..5090
                     /locus_tag="SF010_001243"
     CDS             4329..5090
                     /locus_tag="SF010_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8230167.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            5087..5773
                     /locus_tag="SF010_001244"
     CDS             5087..5773
                     /locus_tag="SF010_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG8230168.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            5770..6582
                     /gene="thiD"
                     /locus_tag="SF010_001245"
     CDS             5770..6582
                     /gene="thiD"
                     /locus_tag="SF010_001245"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG8230169.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGHALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            6572..7204
                     /gene="thiE"
                     /locus_tag="SF010_001246"
     CDS             6572..7204
                     /gene="thiE"
                     /locus_tag="SF010_001246"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8230170.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            7182..7811
                     /locus_tag="SF010_001247"
     CDS             7182..7811
                     /locus_tag="SF010_001247"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG8230171.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(7808..8260)
                     /locus_tag="SF010_001248"
     CDS             complement(7808..8260)
                     /locus_tag="SF010_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230172.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQARQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLNKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(8257..>8595)
                     /locus_tag="SF010_001249"
     CDS             complement(8257..>8595)
                     /locus_tag="SF010_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230173.1"
                     /translation="DFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTG
                     SFIPLQAQLVIKLQNEELIYEIKPKFNEQLSQQGLISKNISSFNLQNNKLKICLKRQT
                     KYCLKKRILL"
BASE COUNT         3121 a          979 c         1575 g         2920 t
ORIGIN      
        1 ataaaagtgc agaacgaaag ctggccgatg atgaaattta tagtattgca tcaaagctag
       61 gcatgcaatg taaagaattt gtaaaattag aagagaataa aaaaaatcta gtttttggtt
      121 cttttatgct ggtagaaaat tttttaaagg agtggtgtgg taaaaaataa attcactatt
      181 accattacag atattaacgg ttcaagacat ttttatttaa atcaaataat caaaaaaata
      241 gttttttata ttattgcttt tattgtttta tttttagttt ttagtggttt ttatatcaaa
      301 tatctcgata gcaaacttag tgatatcagt gaaaagcgtg aggagctttt gaaaaaaagc
      361 aaagaattgg aattatctaa ttcgcaaatg caaaaaagca tagaagaaaa aactcagcag
      421 tatgcagcta tagaagataa aatagcttct tttgaagagg ctttgggctt agaagcagaa
      481 aataatctta caattagtgc aagacttgat aatcttcagc ttaccaatga gcagcaactt
      541 ggaattttgg ggcaaattcc taatggatgg cctattgaaa ataaaggcat tacaggaaat
      601 tttggctgga gagagcatcc gcttttaaaa agaagggaat ttcatcctgg tattgattta
      661 agagcagaaa ttggtactcc tatttatgca ccagcaagtg gagtagtgga attttcaggt
      721 tatagtgata atggctatgg ctataatgta attttattgc ataattttgg ttttaaaaca
      781 gtatttgctc atatgatgcg caaagaagtg gtcaaagcag gtcaatttgt taataaaggg
      841 cagttgatag gttatagtgg caatacaggt ctttctacgg ggccgcattt gcactatgag
      901 gtaaggttta ttaataaaac tttagaacct ttgtattttt taaatttgca aagaaaaaat
      961 atgaatgatt tttttaatca agaaaggaga gttccatggc aatctttaat aaaggcggta
     1021 tcagcccaac atccagctct agctcagaaa caacagtaat ttcttcaggt gcgagaattg
     1081 agggtaaatt ttattttgct tctatgcttc atgttgatgg agagttaagt ggtattattc
     1141 attctgaaag cattgtggtt atcggaaaaa atggaaattt aaaaggtgaa ttacaagcag
     1201 ataaaattgt agtaaatggg tgttttgaag ggcaacttga ggctaatagt ttagaaattt
     1261 tagcgggcgg agttgttaat ggtgatattt caacgcaaaa aatttctata gaaaatggcg
     1321 gtcgctttaa tggaactagt aaaattaaag aagatactat caaacttatt gaaaataaca
     1381 acgaagaata atgcaagctt cattttatga atacttacaa aatccaaaaa tttgtgaact
     1441 ttttctttgt aaagatgaaa aacaagcaga tttactcgct caagtttcac gatttaaggg
     1501 tttaaaaacc tttgttttac ctgattttag agcgcagttt ggagatgatt taagggcttt
     1561 ttctaaagaa ctttttgatc tttgtaagat tttaaatgct tatcataaag aagaagaaaa
     1621 aaaaatcctt atttctcctt taaatactgt tttaaaaaaa cttccttcaa aaaaacattt
     1681 acaaaattat catatcgata aaaaacaaaa ttttgatttg aaatgttttg aagatgaaat
     1741 ttcaagattg ggatacgaat ttgtagatat agttcaggat aaaggtgaaa tttcaattcg
     1801 tgcggatatt attgatattt tttgtatcaa tgaagaaaat cctattagaa ttttactttt
     1861 tggcgaagag attgaaagta taagatattt tgatttgcaa agtcaaaagt ctattcctaa
     1921 cgaactagaa cattttgaaa tttgtccttt tttaaaatat tttgacaaag aaaattatga
     1981 aatttttaag gacaaattag aagattttca aagcgatgct ttaatacatg atatcaattc
     2041 tttaggcttt tggtgtattg atgatttttt tgattattta gaacttgatt ttttagcttg
     2101 tgaaaagttt gatattaatg aatatgaaaa ggatataagt tttgtgaatg caaaaatttt
     2161 acctcaagct aaaaaattta aagaattgca aagttcttac aataaagatt tttttgaatt
     2221 tcataaaaat aaaaaaatca cacttttagc taaaaacgaa gctttattta aagctttaga
     2281 gcttgaagat actcaaaata tccattttgt aaaaagtgat ttaaggctta atcttattag
     2341 tcctgaagag ctaattattt ctttaaatca aaaagaaaaa caaaaaacaa gaaaaaaagc
     2401 tagtttgatt atagatgagc ttaaaaatgg ggattatata gtacacgaag attatggggt
     2461 aggtaaattt ttaggtcttg agatgatagt gataagcgga gcaaaaaaag agtttgttgc
     2521 tatagagtat caaaattctg ataagctttt attaccagtg gaaaatcttt atttgattga
     2581 taaatatttg ggcgtgagtg gatctattcc aagcttagat aaactaggta aaacaagctt
     2641 tattaaactt aaagaaaaat taaagactaa acttttagcc atagcttctg aaattgttat
     2701 tatggcggct aaaagatctt tggtgcaagc aaaaaaaatt acagtggatt taaatagaca
     2761 gactgatttt atagctagtg cgggttttat ttatacaagc gatcaagata aagcctgtca
     2821 tgaaattttg caagattttc aaagtggaaa agtcatggat aggcttttaa gcggtgatgt
     2881 gggttttgga aaaacagaag tcgctatgaa tgctatttat ccagtagtta aaagtggatt
     2941 ttgcgcattt ttatttgcgc ctacgacttt gctttctcat cagcattata aaaccttaaa
     3001 aaagcgtttt gatccttttg atataaaggt ttttaaactg gatcgcttta caagtagtgc
     3061 agaaaaaaaa caagttttac aaaatttaaa agaaaataaa gcttgtgtag ttgtaggaac
     3121 tcatgcactt ttaagtgtag aatgtgaaaa tttagccctt gttattattg atgaagagca
     3181 taaatttgga gtgaagcaaa aagaaaagct taaagaaatc actcaaaatt cacatatttt
     3241 atccatgtca gcaaccccta taccaagaag cttaaatcaa gctttaagtt ctataaaatc
     3301 ttatagtgtt ttgcaaactc caccagaaga tagaatggat gtaagaactt ttgtcaaaga
     3361 aaatgatgac gcacttttaa aagaagctat agcaagagag ttaagacgtg gtgggcaaat
     3421 tttttatatt cataatcata ttgcaagtat agagcaatgt aaaaagcatc tattagaact
     3481 tttttctact ttgcgtattt tgattttaca ttctaaaatc gatgccaaga tgcaagaaga
     3541 agaaatgttg aaatttgaaa acaaagaata tgatttgctt ttaagtacct ctatcgtaga
     3601 aagtgggatt gatttaccaa atgcaaatac tatcatagta gaaaaaagcg atcgttttgg
     3661 catggctgat ttgcatcaat tgcgtgggcg tgtaggaaga agtgataagc aaggttattg
     3721 ttatttttta attgaagata aaaatgctat cacaaaagat gctttaaagc gtctagtttc
     3781 cttagaaagt aattcttttt taggcgcagg ttctattttg gcttatcatg atcttgaaat
     3841 tcgtggcggt ggaaatttat taggcgtaga tcaaagtgga catattgagc aaattggata
     3901 tagtttatat cttaaaatgt tagaagatga acttaatgct ttaagtaaaa atgaagtgga
     3961 tcaaaaagaa aataaacttg atttaaaact caatgttaat gcctttttaa acagcgaact
     4021 tatcagcgaa gatcgcttaa gattagaact ttatagaaga cttagcaagt gtgagcaagt
     4081 tcatgaggtt tatgagatcg aaggtgaaat tgaagatcgc tttggaaaaa ttgacattta
     4141 tactaagcaa tttttatctt tgattactat taaaatttta gctttaaata aatttaaaag
     4201 cattagtaac tatgagcaaa atattcaatt tactgcttta aatgatgaaa aagaactcat
     4261 caaggcaaaa agcaaagatg atgatgatat tttagaggca attttaacgc atttaagaaa
     4321 ggcttaaaat ggattggaat aaaacttatg cagcaattta tagagcaaga aaagattatt
     4381 taaagcctat ttttgaaatc gatcctattg ctttaaaaga tttagtaggt atggaaagtc
     4441 aaaaaaaagc actttatgaa aatactttaa atttcattca agataaggga gcaaatcacg
     4501 cacttttatg gggatctaag ggcactggaa aatcaagttt aattaaagct atatttaatg
     4561 aatttaaaga acagggctta agacttgtcg aattaaataa agaagattta tttgccttag
     4621 cagatatcat cgatgaaatc agattagaaa attttaaatt catacttttt tgtgatgatt
     4681 tttcttttga aaagggagat gatagttata aatttttaaa acctttactt gagggaagca
     4741 tagaaaaagc cccaaataat gtaattattt atgcgagttc aaatcgtagg catttattaa
     4801 gtgaaagcat tactgataat cttgatacgc aaatcacaca tacagaactt catttaagcg
     4861 atgctgctga agaaagatta agtttgagtg atagatttgg tttgtggtta agtttttatc
     4921 agggaaattt agaagagtat ttaaagatga tagattttta ttttaaagat tattcttgtg
     4981 ataaagagct tttgcacgct aaagctaaag aatttgctac tctaagagca agtagaagtg
     5041 gtcgtaccgc aaagcaattt tatttagctt ttaaggagaa ttttaaatga ctggagcaca
     5101 aatttttacc aagcttttaa atttggattt aaattatcat gattttgatt ggcttgaaaa
     5161 tcaaggattg agtgaatttg agcttttaat ttctgtcgtt ttaactcaaa atacaaattg
     5221 gaaaaatgtc ttaaaagctt tagaaaattt aaaaaaagaa aatattgcaa gcttagaaca
     5281 aatcaatact ttatccaatt tagaacttgc aactttaatt aagcctagcg gattttataa
     5341 taccaaaact aagcgtttaa aaggtttggt agaaagtatc ataaacactt atgaaaattt
     5401 agaaaatttt aaaacaaatg caagcagaga atggctttta aatatcaaag gtttaggttt
     5461 tgaaagcgtt gatagtattt taaactatct ttgcaaaaga gagattttgg ttgtagataa
     5521 ttatagtttg cgtttggctt tttacttagg ttatgagttt gaaaattatg aagaattaag
     5581 agaatttttt caaagtgaca tagagagtga gcaagaaaat ttgtataaaa ttttaggaaa
     5641 aaaatgcgaa ctttacgaac tttatcaaat ttttcatgct ttgattgtag cttttgcaaa
     5701 acagagtttt aaaggacaaa aattaagccc taagggtgaa gaatggatca aaattttaaa
     5761 ggaagattta tgaaagcaaa aggaagtgaa cttatacctg ttttaactat agcagggagt
     5821 gattgtagtg gtggagcagg gatacaagcc gatcttaaaa cctttagtgc acacaatctt
     5881 tttggtatga gtgtggtttt aagtgtggta gctgaaaata ccgcaagggt gatttctgta
     5941 cacgatatac ctactcaaag cgtggatgaa caaatgcttg ccgtgtttga agatatagtg
     6001 ccaaaggcaa ctaaaatcgg aatgataggt tcttgtgaat taatgagctg tgtagctaaa
     6061 aatttaagcg agtttaaacc tcaaaatgta gttattgatc ctgtaatgtt tgccaaaaat
     6121 ggccatgctt taatgccgca agaaaattgt gattttttca aacaaactat aataaaattt
     6181 gcagacattc ttactcctaa tattcctgaa gcagagtttt tatgtggttt taagatcgct
     6241 aatgaagagc agatgataaa agcagctaag catttatgca gcttgggggc taaggcagtt
     6301 ttacttaaag gcggacatag tgaagcaaat gccaatgatg tgctttataa tggaaaagaa
     6361 atttatattt taaaaggcga acgcatagaa actaaaaata ctcacggtac aggttgtacg
     6421 ctttcttcgg ctattgctag taatttagct aaaggcaagg atttatttca cgctgttagt
     6481 gaagctaaag agtatgtaag aaatgcgatt tattattcac ttaatcttgg aaaaggttgt
     6541 ggtcctacaa atcatttttt caagtttcta gatgaaaaat aaattagatc ttagccttta
     6601 tttggttgct actaagggaa ataaaagcga ggagtgtttt ttaaatactt tagaaaatgc
     6661 tataaaaggc ggagtaagta tcatacaact tcgtgaaaaa gagcttaatg caagagaatt
     6721 ttataaacta ggcttaaagg tgcaaaaact ttgcaagtct tataaaatac cttttttgat
     6781 taacgatagg gtggatatag ctttagcctt agatgctgat ggggtgcatt taggacagga
     6841 agatttagaa gcaaaattag ctagaaagct tttaggagat gaaaaaatca taggcttaag
     6901 tcttaaaaag ttagaacaac ttgagtttat acaaggagta aattatctag gttgtggagc
     6961 tattaaggca acgcctacta aagaaagttc gcttttaagc cttgagcttt taagtcaaat
     7021 ttgtgataaa agccctatag gggttgtagc cataggtggg attgacaaag aagcacttgt
     7081 tgagttaaag ggtataaatt taagcggtgt ggctgtggtt agggcgatca tggatgctaa
     7141 agatgctttt ttggcagcta aagagctaaa gcgtaaaatc tatgaaaatt tatctcttaa
     7201 atgaaactcc ttttgaaggg gtggaaaatc ttattttaaa tgagattgtt ttttatgatt
     7261 ttagtgtgga tttgagtttg tatgatgctt taatctgcac ttcaaaaaat gctttaaaag
     7321 ctttacaaca tgcaaaaatc actttaaatt tcaaactcaa tttatacgct gtgggacaaa
     7381 gtacagctca atacgctaaa aatttaggtt ttaaaaagat taaaattcca tcaaaggctt
     7441 atggaaaaga tctttttctt gaatttaaag aggagttaaa aatgcaaaaa tgtttgtatt
     7501 taagggctaa aaatattgtt tcaactttaa atttggatct taaaaatgta ggtgtggatt
     7561 tagatgaaat gattgtttat gaaaatgttt ttaaaaaagg cgacaaaaag cttatctatc
     7621 ctgctatttt tatattcacc tctcctttaa gtgtagaaaa ttttttaaaa ttttatagct
     7681 taaaagaaga agataaggtt gtagttatag ggcaaagcac agcaaagaag cttttaaatt
     7741 ttaaaaatct ttatatatgc gaaaatcaaa gtcttttaga ctgtgttaag ctcgctaaga
     7801 ctttggttta attttttaaa ttccaaaaat tttctttggg ataaataata atgctttttg
     7861 tgagtaaaat ttcatcattg acgtttttat cacgatttaa agcaatacta atgtgggcta
     7921 tgataacacc atctttgttt aaatttgcat cgggattgaa gttggaaaat ttaaaattaa
     7981 cacattgtgc aataggataa aaatatttta ttttaatcaa agcttttgtg taattaaaat
     8041 atatattatc taaacattct ttattttctt gccttgcttg atataaaaaa tatttagaaa
     8101 attgtgttgc attatgactt aaaatttgag cttgaaggta gtaataacta tcttggatta
     8161 tttttggagt atagctggat atgtttaagg tcaagctcat ccatagactt attagtagta
     8221 ttaaaaaaat tgtccaaatt aaaacataag cttttttcat agtaaaattc tttttttaag
     8281 acaatatttt gtttgtcttt ttagacaaat ttttaattta ttgttttgca ggttaaatga
     8341 gcttatgttt ttagaaatca atccttgttg gcttaattgt tcattaaatt ttggctttat
     8401 ttcatatata agttcttcat tttgcaattt gataactaat tgagcttgca aaggaataaa
     8461 actgcctgta aaatttgcag atataccatt ttccaagata gatatttttt caatcttatt
     8521 aattttataa gcatagctaa tatgttcatt gtcgttatat aaatcttttc tattttggag
     8581 ttgtgtttta aaatc
//
LOCUS       DARGEX010000066         8557 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.066, whole genome shotgun sequence.
ACCESSION   DARGEX010000066 DARGEX010000000
VERSION     DARGEX010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8557
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.066"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            13..1533
                     /locus_tag="SF010_001250"
     CDS             13..1533
                     /locus_tag="SF010_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230174.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKENAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDESFELQNNFYSLLGLVGRVLNLGKNL
                     QESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            1514..3703
                     /gene="hypF"
                     /locus_tag="SF010_001251"
     CDS             1514..3703
                     /gene="hypF"
                     /locus_tag="SF010_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8230175.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACAQKECENFIENLKNHLPPLARIDKLIMTQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRINTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFMQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFEGSLVATSANLSGESI
                     VKDEFNLCQKLDGVFDFYLDYDREIINASDDSIVQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKATFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKFFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3781..4524
                     /gene="hypB"
                     /locus_tag="SF010_001252"
     CDS             3781..4524
                     /gene="hypB"
                     /locus_tag="SF010_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG8230176.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4524..4805
                     /locus_tag="SF010_001253"
     CDS             4524..4805
                     /locus_tag="SF010_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG8230177.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4789..5880
                     /gene="hypD"
                     /locus_tag="SF010_001254"
     CDS             4789..5880
                     /gene="hypD"
                     /locus_tag="SF010_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG8230178.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5877..6851
                     /gene="hypE"
                     /locus_tag="SF010_001255"
     CDS             5877..6851
                     /gene="hypE"
                     /locus_tag="SF010_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG8230179.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6851..7195
                     /gene="hypA"
                     /locus_tag="SF010_001256"
     CDS             6851..7195
                     /gene="hypA"
                     /locus_tag="SF010_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG8230180.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGVEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GGDLHLMRLVME"
     gene            complement(7217..8232)
                     /locus_tag="SF010_001257"
                     /pseudo
     CDS             complement(7217..8232)
                     /locus_tag="SF010_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882548.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
     gene            complement(8238..>8557)
                     /locus_tag="SF010_001258"
     CDS             complement(8238..>8557)
                     /locus_tag="SF010_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230181.1"
                     /translation="KILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYT
                     PPPQVGQNLSSQAFSLKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARIL
                     KIN"
BASE COUNT         2978 a         1031 c         1578 g         2970 t
ORIGIN      
        1 aaaaggcata atatgacttt ggattttgat tttatttata atgcagataa tgatattttt
       61 gaatatttat tgcgttttta tgcgaaaaat tacaattata tccttagtaa agaagaaaat
      121 acttatcatt tttctatcga tgcagatgaa gaaaatttaa agactttttg cgattctttg
      181 aatttcatga gtcatagcgt ttttttgaaa aaatttgatg taaaagcggg gcagggtttt
      241 aacccttgta taccagaaga taaagaattt tcaagatttt cttatattac tcatttaaat
      301 tctaatgctt atcaagaaaa aaaactttta aacaaaaacg aatggggcgt gttttgtgag
      361 tgtgaatttt caagcaattt atcagaattt gaaaaaatca atgaagaaaa tttcaatact
      421 tttttaaatc ttgcctttga tttgttaagt caagaaaaaa agatttattt gaaagataaa
      481 aatggtattt atgaattttc tttgtttaag aacgaattta taggagattt tttacttcct
      541 tgtgatatta aggctataaa ttcagttttt gtttgttcaa atgaaaattt aaaacttctt
      601 gcaagtttag aaaaaccttt gatgaagcta aggcttaatg ctatgtttag aaaaaatcac
      661 aatcttgatt ttagtgattt taaaattaga cttgctaggg atttattttg ttttgcttta
      721 ggtttgaaac tttttgaaaa tgagtataaa tttttaagcg taaaaaagat agaagaatat
      781 caaaaagatt tttatatcag tgctttagat gagcaagtgg tggttttgga aggctttgaa
      841 tttatcaatg ctaaggcaag agagcttatt ttttctaaag aagataaaaa tatggcaaga
      901 atttcttatc ttgtaagccg ttataaagaa aatgctttta ttttagagct aagtaaagat
      961 gatgaagata ttttgcttat caacaaagag cttaatttac ttaaactttg cttaccaaaa
     1021 cacagcaaag agctttatga agagattaaa aaagatgaaa ttggtgcaag gcttttagaa
     1081 aattttagca aggaatttcc tcttttagat gaaagttttg aacttcaaaa taatttttat
     1141 tctttgcttg ggttagtagg tagagtgtta aatttaggta aaaatttaca agagagtgtt
     1201 agcgagcttt taaaaatcgc tgatgagtca aaaatgcctc gtggagtaaa gattgattat
     1261 cgtttgaaag aagataaaag ttttgattat acaagaactt taagatctgc catgagtttt
     1321 atgttagcag gtgtggatag tgctaatatc gcttatggag cggttgagag tttggcttat
     1381 ttcttgcgtg atacttatga tgaattaaga gagaaaaagc aaagtgattt agcgcttata
     1441 agtggatctt tgtttgaaca taaatctttg cttaaaaata ctttaaaaca tcttaaaaat
     1501 tgtcagttaa gcgatgtgcc acttagggta taagatcaaa atttcaggct tggttcaagg
     1561 ggtgggtttt cgtcccttag tttatgaact agctctgaaa tcaaagcttt ttggagaggt
     1621 aagaaatgat ggttttgggg tagaaatcat ccttgcttgt gctcaaaaag aatgtgaaaa
     1681 tttcatagaa aatttaaaaa atcatcttcc acctttagca agaatagata agcttataat
     1741 gacgcaaatt tctatttcaa actatgagaa ttttagcatt actccttctt tagagaatac
     1801 aaaaagcacg cctatgttaa gtgattttgc gctttgtaag gagtgtaaaa aagaattttt
     1861 tgatgaaaaa aatccacgct ttttatatcc ttttatcact tgcacgcatt gtgggccacg
     1921 ctttagtatt ataaaaagtc ttccttatga taggattaat acttccatgc aagaattatt
     1981 gatgtgtgag ttttgcaaaa gtgaatacga agatcctaaa aataggcgtt ttcatgccca
     2041 gcctattagt tgtcctaaat gcaaaatcaa tgtttttctt aaaaatccaa agggtgaaat
     2101 tttagccaaa gatcaagaag cttttatgca aagtgcgaag tttttaaagg aaggtaaaat
     2161 tttagccata aaaggtatgg gtggttttca tctcatgtgc gatgctttta atgaagaagc
     2221 tttaaaaact ctaagactta gaaaaaatcg ccctaaaaaa ccctttgctt tgatgtgtaa
     2281 agatttacaa agtgctaaag aacttgcctt tatagatgaa aaagaagaag ctttgcttgg
     2341 tggagtttta gctcctattg tgattttaaa ggcaaaaaaa gccttttctt taattgctcc
     2401 tgatgttgat aaaataggta ttatgttagc ttatacgcct ttacatcttt tgctttttga
     2461 gtattttgaa ggaagccttg tggcaacaag tgcaaattta agtggagaaa gtattgttaa
     2521 agatgagttt aatttgtgtc aaaaacttga tggagttttt gatttttatt tagattatga
     2581 tagagaaatt atcaatgcaa gtgatgatag catagttcaa gtggtaaatg gtaaaactat
     2641 gtttttgcgt acttcaaggg gtttaaatcc tttttatttg gaaagaaatt ttaataaaaa
     2701 agccactttt ttagctttgg gtgcggagct taaaaatgaa tttgtgattt tttatgaaaa
     2761 taaactttta atttctcctt atatagggga tttgaaaagt cttgatgtgc atgagagatt
     2821 ttttaaactt ttagaatttt ttaaacaaaa ttatgatttg aaatttgatg cgattttgtg
     2881 cgataaacac ccgcatttta gctatgcaaa agaatttgaa gaaaggatta aaatttctca
     2941 tcattatgcg catttttgtg cggcttattt tgaatacgaa gaaaattttg caaaagatga
     3001 aaaggcttta gcttttattt gtgatggaac aggttatggc gaagatggta aaatttgggg
     3061 tggagaagtt tttgtaggaa atttaaaaga atatgaaaga attgcacatt ttgaaaattt
     3121 cactcttata aatagtgata ttaaaaatat acaaaattta gccttaagtc ttatttttca
     3181 ttatgattta gaagataagg ctaaggattt tttagcaaaa attccaaaaa ttaaacttaa
     3241 aaatcttaaa aaaatttatt ctcattctaa cttacaaaca agttctttag gacgcattat
     3301 cgatgctttt ggaagtattg tttttaactt agaaaaaagt tcctatgaag ctcaagttgg
     3361 cttaatgtgt gaagcttttt atgataaaaa tcttgatttt tcttataagt tttttgtaga
     3421 aaaagggcag gttaatttta aaaatttaat cctaggggct ttgcaagatg aaaaaactaa
     3481 ggcgattaca ggtatgttta atgccttggc aaattttatc atagatttta gcaaagatta
     3541 tgatttaaaa gtgcttttaa gcggaggggt ttttcaaaac aaaaccttgc ttgaaatttt
     3601 aaaagctaaa aattttgatt tttttatacc tttaaagtac ccttgtaatg atagctccat
     3661 agccttagga caaatggtgc attttttaaa tttagaaaaa taaagcaaat attctaaaaa
     3721 ctcataattt tttaatgctt ttaaggttaa aatgaaacaa aaaatatata aggaaagaaa
     3781 atgtgtaaag attgcggctg ctctataaat tcaagccata cgcatggtca tcatcacgac
     3841 caccatcatg aaaatccaag tttaaaagaa agcaaaacca tagaagtgat ttctaaaatt
     3901 ttaagcaaaa atgatgaaga agctaagcac aatagagcgc attttaatga agctaacacg
     3961 ctttgtatta atttaatgag ttccccaggt agtggaaaaa ccacgctttt agaaagcacg
     4021 attaaggctt tgaaaaatga acttaaaatt gctgtgattg aaggggattt agaaaccaat
     4081 aatgacgctc taagggtaaa aaatgccgga gctttggcgt atcaaatcac tacaggacaa
     4141 agctgtcatt tggacgcttt tatggtgcat gaggctttgc atcatttagc cattgatgat
     4201 gtggatttgc tttttataga aaatgttgga aatttggttt gtcctgcaag ttatgattta
     4261 ggagagcatt taaatgtggt tttgctttcg ataactgaag gaagtgataa accgcaaaaa
     4321 taccctgtga tgtttaaaaa ggctgatata gttttaatca caaaggtaga tttggcccat
     4381 cattttgatt tcgatattaa agaggcgact aggttgatta aagaattaaa tcctagagca
     4441 gatattatca cccttgatgc aaaaaatggc accaatatgg agctttggta taaggtgctt
     4501 aaacttaaaa aggagctttt ttaatgtgtt tgtctatacc ttctgaaatt ttagaaatcg
     4561 atgagttaaa caatgcttta gtacaaactt taggcgtgaa aagaaaagtt aatttggatt
     4621 tgattgatga acctttaaaa caaggcgatt atgtattaat ccatgtaggc gttgctatgg
     4681 aaaaaatcga caaagaagct gcactagaaa gcattaaaac ctatcaagaa atagtagaaa
     4741 aaatgaatag tggagagata aaaagtgatg aaggagattt gggtttaaat gaatttcatc
     4801 gatgaattta gagataaaga aagcatttta gctttaaaaa aactcataga acaagaactt
     4861 aaaaatccta ttaatatcat ggaaatttgc ggtgggcata cgcatagtat catgaaatat
     4921 gctttgcctt ctattttgcc aaaggaaatt aactttatcc atgggccagg atgtcctgtt
     4981 tgtgttatgc caagagttcg cattgataca gctatcaagt tagcctccat gaaagatacg
     5041 attttttgta ctttagggga tcttttaagg gtgcctggaa gtgaaatttc tttactggat
     5101 ttaagagcta aaggggctga tgttagagcg ctttattctc cacttgaggt tttggaaatt
     5161 gctaagcaaa atttaaacaa aaatatcatc ttttttgcta taggttttga aactactacg
     5221 cctatgagtg ctttacttct tcaaaaggtt atagaagaaa aaataaataa tgtctttttt
     5281 catatcaatc atatcacagt tccagcacct gtagaagcga tcatgaatga tgaaaatgta
     5341 aaaatcaatg cttttttagg tccttctcat gtgagtgtga taacaggtta tggtatttat
     5401 gagcctttag cagcaaaatt taaaacccct atagcggtga gtggttttga gccagttgat
     5461 attttagaaa gtgtgttaaa tatcataaaa caaagcaatg aaggcacttt taaagtgtat
     5521 aatcaataca aaagagccgt aagcaaagaa ggcaatgtta aagcacaaaa tttagtaaaa
     5581 aaatacttta gggtgtgtga ttttgaattt cgtggcttag gacttattaa agatggaggc
     5641 ttggagttaa aagaagaatt tagcgcttac gatgcgagta aaaaatttga ttgtgcggtg
     5701 caaagtaaaa atgaaagcaa agcctgtatt tgtgggcaaa ttttaagagg tttggccaag
     5761 ccttatgatt gtaaagtttt tggcaaggct tgtacgccaa gaagtcctat aggaagttgt
     5821 atggtttctg gcgagggtgc ttgtgcggcg tattataaat actcaaaggt gaatgcatga
     5881 aaaatatttc cttagcccac ggaggcggtg gagaagagat gaatgagctt ttaactaagc
     5941 tttttaagat ctttgataat gaaattttaa acgcaaataa tgatgcagcg attttgggaa
     6001 atttggcttt aagcacggat tcttttgttt taagtccgat ttttttagat gaagaggtta
     6061 atataggtaa actttgtgtt tgtggttcta ttaatgatgt tttgatggtg ggtgctaagc
     6121 caaaatatct aagcttaggg cttatcttag aagaaggttt tgagctagaa aaattagaac
     6181 gtattttaaa aagcattaaa gaagaatgtg aaaaatgtgg agttatgtta gtttgtggcg
     6241 atactaaagt tgttcctaag ggtaaagcag atgaaattta tatcaacact acagccttag
     6301 gtgaaattat ttctaaaaaa gaaagtaaaa atatcaaagc agggcttagc atacttcttt
     6361 caggtgatat aggaaggcat ggagctagtg ttttaatcaa aagaaatgag ttagaagcta
     6421 atgttaaaag tgattgtaag gctttagata aagaggtttt agagctttta gaaaaagata
     6481 taaaggttgt agcaatgaga gatgctactc gtgggggact tagtgcggtt ttaaatgagt
     6541 gggcaaagca aagtggaaat gatcttttga tctttgaaga aaaaatcatc gttcaagatg
     6601 aggttttagg actttgcgag ctttttggtt atgaagccta tgagcttgca aatgaaggca
     6661 cttttatact ttgtgtggaa aaagaagatg ggttaaaagc cttggaaatt ctaaaaaaat
     6721 acaatgtaaa tgcgagtatt ataggagaag ttttagaaga gaaaaaagca cgcgtgatct
     6781 tacaaaacgc ttatggagca aaacgctttt tagaaagccc taaaggcgaa cttttaccaa
     6841 gaatttgcta atgcacgaat taagtatagt agaatcttta atcgaacttt gtgaagaaaa
     6901 tgccttaaac aataaggctt acaatgtgca agaaatttat gtaaaaatcg ggcgtttaag
     6961 cggtgtagaa gtggatcttt ttaagcgttg ttttgaaact tttaaagaaa actcaaatat
     7021 ttgtaaaaat gctaaacttt ttatagaact tgccccactt gaaattttat gcttaaaatg
     7081 cgatcaaaca agcattttag aagaaaatgt ttttaagtgt cctaaatgtc aaagtataga
     7141 atacaaaatc acacaaggtg gggacttgca ccttatgcga cttgtgatgg agtgaaagta
     7201 aaatcaataa atgattttac tttctgcttt caaatgcttt gataatatct gctttatatt
     7261 gataaatatc ttctaatttt tctatattat aactcgctcc atctggaaaa ctaatagatt
     7321 ttttgcttgt attaaaatat aatctacata tccacttagt aaccttgcct tgatataaaa
     7381 tactaaaata gcttaaagta tctttgtaac ttacatcttc aagattggca ctgacactag
     7441 caagaattga ttttactata tagaaacctt gtaattcttc ttctgttgtg acaatatctt
     7501 tactttcatc aatttgctca tcattttcat catcgtttat gttttgaaga ttgtttttaa
     7561 tgcttgtgat tttttcataa gctaaatcat taataatttc tttaaaagat tttttaatgt
     7621 aatttttaaa ttcttctaaa acagcactag tcattctttt ttctgtcatt tgtttagcaa
     7681 aaaaacttgt aaattcatcg cttggatttt ctatttcact tttaaaaatt tcttgtatac
     7741 ttcggtaata ttttttctcc atagcaatgc ttagaatttc atctaagttt aagtcagtgc
     7801 aaataaaacg ttttagatct ttaatatctc taggtttaag tttttcaaga ttaacaacta
     7861 aaaatggtat tttatccata agattttgtt gttcaatatc tgtaaaaaat ctatattcaa
     7921 taccattggt aagaatggca aatttaatac taggattagt gttaaaatat cttacaagct
     7981 gattgttatg attatttaaa ttttcagtat gatttttagc ttcaattaaa ataaaaggtt
     8041 ttgaatcttt gaaaatagca taatccactt tttcgccttt tttagttcct atatctgctg
     8101 tatattctgg cataacaata ctagggttaa aaacatcata acccaatgtt tttaaaaagg
     8161 gcatttaaaa gtcatttttg tagcttcttc agtattgaca agtgttttgc gttcagctat
     8221 tgtttcaacg atggcattta attgattttc aaaatccttg caagtttaag caaatttgaa
     8281 atcaaaaatt ctttttttac gagcttagaa ttggttttaa gctcgtattc gcatttaagc
     8341 aaaagagtga aaatttcttt atattgttcg atttttaaac taaaggcttg agagcttaaa
     8401 ttttgtccca cttgaggagg tggagtatag cctaaaagat ctttaaagtc aattttacca
     8461 ttgactttag cataaagtgc gattttaaac aaacgataaa aagaattata caaagagttg
     8521 attaaagcaa tttcattaaa attatctaaa atttttt
//
LOCUS       DARGEX010000067         8533 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.067, whole genome shotgun sequence.
ACCESSION   DARGEX010000067 DARGEX010000000
VERSION     DARGEX010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.067"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(55..1305)
                     /locus_tag="SF010_001259"
     CDS             complement(55..1305)
                     /locus_tag="SF010_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG8230182.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(1305..2033)
                     /gene="lptB"
                     /locus_tag="SF010_001260"
     CDS             complement(1305..2033)
                     /gene="lptB"
                     /locus_tag="SF010_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG8230183.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(2026..2433)
                     /gene="tsaE"
                     /locus_tag="SF010_001261"
     CDS             complement(2026..2433)
                     /gene="tsaE"
                     /locus_tag="SF010_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG8230184.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(2430..2675)
                     /locus_tag="SF010_001262"
     CDS             complement(2430..2675)
                     /locus_tag="SF010_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG8230185.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            2830..4050
                     /locus_tag="SF010_001263"
     CDS             2830..4050
                     /locus_tag="SF010_001263"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG8230186.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4063..4506
                     /locus_tag="SF010_001264"
     CDS             4063..4506
                     /locus_tag="SF010_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG8230187.1"
                     /translation="MKVLLIKDVKAFGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGVHEVSVKLGHAIHAKFNINIKAE"
     gene            4506..5048
                     /gene="hslV"
                     /locus_tag="SF010_001265"
     CDS             4506..5048
                     /gene="hslV"
                     /locus_tag="SF010_001265"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG8230188.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            5045..6364
                     /gene="hslU"
                     /locus_tag="SF010_001266"
     CDS             5045..6364
                     /gene="hslU"
                     /locus_tag="SF010_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG8230189.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESAIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            6361..7236
                     /gene="era"
                     /locus_tag="SF010_001267"
     CDS             6361..7236
                     /gene="era"
                     /locus_tag="SF010_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG8230190.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFITVKKNW
                     QKDEEFLKKLLNDEN"
     gene            7223..8329
                     /locus_tag="SF010_001268"
     CDS             7223..8329
                     /locus_tag="SF010_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230191.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPGNMDLFFKQNRFTELLKHYESKLLLYQDLNTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNLDQNCNFIKHNKIKISISFKIILIFIF
                     SFSLSMMILLFKDFIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLNFTLSNK
                     ISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNDLKITNLEFEQTKIILSFID
                     ENHFKRALENLNSAFKILDKNEETFNIILEVIHE"
     gene            8322..>8533
                     /locus_tag="SF010_001269"
     CDS             8322..>8533
                     /locus_tag="SF010_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230192.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIET"
BASE COUNT         3209 a         1377 c         1280 g         2667 t
ORIGIN      
        1 attaaattta aatataaaac aaaagtgtaa tgggtttgat agattgatag aattttatcc
       61 ttcaagttca tataattttt ttctatctgt agagcttgct atattaagat gtttgcgata
      121 ttttgtaata gttcttcgcc ctatatctac tttaaattct tctttgatta attctaaaat
      181 tttactatcg cttaaaggtt tattgcgatc ttcattcttt actaaatttg ccacaaattc
      241 tttaacacct acatttgaag tctctccctc ttcatcaaga gcaaaagcaa aaaaatcacg
      301 caaagggata agtcctcttt cacaacttaa atatttattt gccacagctc ttgatatagt
      361 cgaagcattg cgttctaaat caagtgctaa atccttaaaa gtcataggtt ttatctcttt
      421 tcccatgaaa aaatcatatt gatattctac tatcataagc cctattttat aaagagtagc
      481 ttttctcatc gctaaagcat caactaaatt ttttgcttct ttgatgtaat gacttaaaaa
      541 atcatgctct aaaccatcag tttggattga aatttcagga taataatcat cattgatttt
      601 tactttaatt tcaccatttt ctttataaac aaaaatatca ggaacaatta tacgagaatc
      661 ttcaaaatat tccaaaaaag ggggagtgct aaagcgctta agtacagcta atgcttcttt
      721 atataaaggc tctttggtat agttttgtat attttcaaaa tccataatca acattctaca
      781 aaactcatca atatcttcat ctaactccat attttcaaga gcaaataaaa atgcttcttt
      841 gtaatcttta gctcccactc ctacaggatc taaaaattta aatcttgctc ttactcgctc
      901 aatttcttcc aaagaatact cttttaaaaa ttcttcatcg tattcaaaat atccttcctc
      961 atttaagcat tctataattt tttttgcaag ttcttgagat ttgtttgtag gaaacaaagg
     1021 aggaagaatc tgttcattta aaagctcata aacacttttt ttggcaagtc ctttactatc
     1081 cacaaaagcc gaatttacat tatgtttata aaatgaatca aaataattct tacccttatc
     1141 atgagtttgt atcgaatctt gaacatttaa gaaaggatta tcctcagcaa atttatctaa
     1201 attttctttt aaatcctcta tatttgcttg taaaatcggc aaccaagagc gtaaagtttg
     1261 agaaatttta gtcttgggtg cttgggtgat tttttgcttt aacatcaatc aaggagttta
     1321 aactccgctc ctaaataata ctttttcacg tctttattgg ttgcaatttc atcagcattc
     1381 ccactagcaa gcaaagagcc cgatcttata acataagctc tatcacaaat agccaaagtc
     1441 tcacgcacat tatgatcggt aattaaaacc ccaatcccca atcttttaag ctctttaatt
     1501 aaagtttgaa tttcagccac tgctatagga tcaacacctg caaaaggctc atcaagaagc
     1561 aaaaacttag gttcacacat caagcttcta gcgatctcac aacgccttct ttcacctcca
     1621 cttaaactta aacctttcct taaacgaata ggctctatac ttaagagttc aagcatttgc
     1681 tcaactttat catgtaaaat ttttttatct ttataaaaaa tctgagccgc taaaagcagg
     1741 ttatcttcta cacttaaatc cttaaaaata ctactttctt gaggtaaata acctatccct
     1801 gatctagctc ttttgtttaa aggatctttt gtcacatcta aaccgtctaa aagaactttt
     1861 ccactacttg gggaaataag tccacatatc atataaaaag ttgtcgtttt tcctgcacca
     1921 tttggcccta aaagtcctac aacttctccg ctattaacct ctaaagaaat tccatgtata
     1981 atcttagttt ttttaataat tttttctaaa tttacaattt ctaatttact cataaatttc
     2041 atactttctt ttgtcatctt taatgctaat tttaatctgg atagtagaaa ttccaaattt
     2101 cattaaagtt tttttcaaat tttcaccgcc ccattcaacc aaatgcaaac ctttttcaaa
     2161 aaaattttca aataaaccat tcgctaaaag tccttctaaa ccttcttgat aaatatcata
     2221 atgataaatg caaatatcat gattttcata tctttgcata atggaaaaag ttggagaatc
     2281 cacccttgca tcaagaccaa gaaatttaac ccaagcttgc actaagcttg tttttccgct
     2341 agccaaatct ccttgaagca aaacaacacc ttctttaggc attatttgaa gcatcgtttt
     2401 gatctcattt tttgctaaaa taaattcttt cataatttta ccacatattc attttgtgcg
     2461 tttttaggaa tacttttcgt gctaggtata gctaggactt tatatttttg agtgtattca
     2521 gtaaaatgta aagtgataat atcacccacc ttaacctctt tactcgcttt aacaataacg
     2581 ccattaatcc ccactacacc acttttacac atatcttcag aaatagctct tcttttcgtg
     2641 atattaacta catttaaaaa tttatctact ctcataaaag caattttagc aaaaaaaatc
     2701 aatttttgga acaaaatttg cttacgcctt tgctttattt tttaagaaaa tagcaagtaa
     2761 aaacttttct ttaatgaaat ttggatacaa ttttacaatt ttcaaatcta ttttaacaaa
     2821 ggatatctta tgaaaaatga agtaaaaaaa gtagttttag cgtattctgg ggggcttgat
     2881 acgagcatta ttttaaaatg gcttcaagat gagtataatt gtgaagttgt aacttttaca
     2941 gcagatattg gtcaaggtga agaactcgaa cctgcaagaa aaaaagccct ttctttaggc
     3001 ataaaagaag aaaatatttt cattaaagat ttaagagatg aatttgttaa agattatgta
     3061 tttcctatgt ttagagccaa tgcgatttat gaaggagaat atcttttagg aacaagtata
     3121 gcaagaccac ttatagcaaa aactcaagca caaatcgccc tgcaaacagg tgctgatgca
     3181 gtaagtcatg gtgccacagg taaaggaaat gatcaagtgc gttttgaact tggttatctt
     3241 gcttttaatc ccgatttaaa aatcatcgct ccatggcgtg agtgggattt aaacagtcgc
     3301 gaaaagctcc ttgcttatgc acaaaaacac ggtattgata tttctaagaa aaaaggaaaa
     3361 tctccttatt ctatggacgc aaatttactt catatttctt acgaaggact tgtcttagaa
     3421 gatcctgcac acgcacctga agaagatatg tggagatgga gtaaaagccc aaaagatgct
     3481 ccaaatgaaa gtgaaattat agaacttgat ttccaaaaag gagatttagt agcgataaat
     3541 ggagaaaaac taagtcctgc aggactttta accaaactta acgaactagg ctgcaaacac
     3601 ggtataggac gccttgatat agtagaaaat cgctatgtag gtatgaaaag ccgtggttgt
     3661 tacgaaacac caggtggtac catactttta aaagcacaca gggcgcttga aagcatcacg
     3721 cttgatagag aagcagcaca cttaaaagat gaactcatgc caaaatacgc aagtttaatt
     3781 tacaatggct attggttctc gcctgaaaga atgatgcttc aagccttaat cgatgagtct
     3841 caaattcacg ccaatggcag agtaaaactc gagctttata aaggcaatgt gatggttata
     3901 ggacgagaaa gttcgaacga tagcttgttt aacgcagctt attgtacttt tgaagaagat
     3961 gaagtgtata atcaaaaaga tgcagcaggc tttatcaagc ttaatgcttt gcgttttatc
     4021 atcgcaggaa aaaatggaag aaaattttaa taaaggaata aaatgaaagt attattaatc
     4081 aaagatgtaa aagcatttgg aaaagcagga gaaataaaag aagtaaaaga cggttacgga
     4141 caaaatttct taatcgctaa aggctttgct aaagcagcta ctaatgaagt tttaagaaaa
     4201 tatgaaagcg acaagaaaaa agaggctgaa aatttacgct ttgaaatcgc aaatttagaa
     4261 aaactcaaag aagaacttag caaaatcact cttgaaattt caaaacccgt aggtgcaaat
     4321 ggaagtttgt ttggtggcgt aaccaaagat gaaatcgctc acgccctaaa agaacaaagc
     4381 catatagaaa tcgataaaaa aagtttagaa tgtgatacct taaaaagctt aggagtccac
     4441 gaagtaagcg taaaacttgg acacgcaatc catgctaaat ttaacataaa tataaaggca
     4501 gaataatgtt tcacgcaaca acgattttag cttacaaagg taaaaataaa tccgtaattg
     4561 gcggagatgg acaagtaagc tttggaaata cggtgctaaa aggcaatgct gtaaagatta
     4621 gaaaactcaa caatggcaaa gttttagcag gttttgcagg atcaacagct gatgctttta
     4681 atctttttga tatgtttgaa aatctccttc aaagttctaa aggcgatctt ttaaaagcag
     4741 caattgactt ttctaaagaa tggagaaaag acaaatacct aagaaaactt gaagccatga
     4801 tgcttgtact tgatagaaat cacatttttc tactttctgg tacaggcgat gtggtcgaac
     4861 ctgaagatgg gcaaatcgca gccataggaa gtggtggaaa ctatgcactt tcagctgcta
     4921 gagccttagc aaaacatacc gatttagatg aagaagaact tgtaaaatca agtcttcaaa
     4981 tcgcaggtga aatttgcatt tataccaata ccaatatcaa aacttatgta atcgaggatg
     5041 agaaatgaat ctaactccaa aagaaatcgt taaattttta gatgattatg ttataggaca
     5101 aaaaaaagct aaaaaaatca tagctatagc tttaagaaat cgctaccgca gaatgcaact
     5161 tagccctgag ttgcaagatg atatagtgcc aaaaaatatc ttgatgatag gttctacagg
     5221 tgtaggaaaa acagaaatcg ctaggcgttt agctaaaatg atgggctttc ctttcatcaa
     5281 aatcgaagca agtaaatata ctgaagtagg ttttgtaggt cgtgatgtag aaagcatggt
     5341 aagagatctt gccaatgcag ctttaaattt agtaaaaaac gaacaaagag aaaaaaacaa
     5401 agataaaatc gatgaattta tagaaaataa aattttagaa aaacttttgc cacctctacc
     5461 aaaaggtatc agcgatgaaa aacaagaaga atataaaaac agtcttgaaa aaatgagaac
     5521 taaactaaga aatggcgatc ttgatgaaag cgccatagag atagaaattt cacaaaatat
     5581 gtttgatacc aatcctaacc tacctcctga aatgggtgca atgcaagata tagttaaggt
     5641 tataggcgtt ggcagcaaaa aagtcaaaaa agaaatgaaa atcaaagacg ctaaaaatgc
     5701 tttaaaaaac gaagcaggag aaaaaatcct agatcaagaa agcatcaaaa gcgaagcctt
     5761 aaaaagagcg gaaaatgaag ggattatttt tattgatgaa atcgataaaa tcgctgtttc
     5821 aagcggaaat tcaaaccgcc aagatccaag caaagaaggg gtgcaaagag acttacttcc
     5881 tatagtcgag ggatcaaatg tacaaacaaa aataggtact ttaaaaaccg atcatattct
     5941 ctttatcgcc gcaggagctt ttcatcttag caaaccaagc gatcttatcc ctgaattgca
     6001 aggacgcttt cctttaagag tggaattaga tagtcttgat gataaagctc tttatgaaat
     6061 tttaacacgc cctaaaaatt cacttttaaa acaatactct cagcttttaa aaactgaaaa
     6121 tttagaactt gattttaatg atgaggcaat taaagaaata gcaaaaatag cttcaagagc
     6181 caatgaagaa atgcaagata taggtgctag acgcttacat actgtgatag aaaaattact
     6241 tgaagattta agctttgaag ctgatgagta tgcgggtaaa aaattcgtag tggataaaaa
     6301 aatggtagaa gaaaaactcg gagatatcat agaaaataaa gatcttgcaa ggtatatttt
     6361 gtgaaaagtg gctttgttag catcataggg cgtactaatg caggaaaaag tactttaatc
     6421 aattccttat tagaagaaaa aatcgcccta gtttctcaca aacaaaatgc cacaaggcgt
     6481 aaaatcaaag ccatagtgat gcatgaaaaa aatcaaatca tttttatcga taccccagga
     6541 cttcacgaaa gcggtgctac gcttaatcaa ctgcttgtcc aaagtgctat taaatccatg
     6601 ggagattgtg atgtgatttt atttgtggca agtgtttttg atagtacaaa agactatgaa
     6661 aatttcctta gtctaaaccc acaagtacca catatcatcg ctttaaataa agtagattta
     6721 accgacaatg ctacgctttt aaaaaaactt agcgaatatg caaaatttag ccaacatttt
     6781 aaggctatca ttccttattc ttctaagaaa aaaagctata aaaaaggctt gttagatgag
     6841 atagtaaaat accttgatga acatgagtat ttttatgatc ctgaattttt aagtgcgagt
     6901 agcgaaaaag aactttatag agatttcata cttgaaagta tttatgaaaa tttaagcgat
     6961 gagcttcctt atagtagcga agtgcttatc aatcgcacca aagacacacc taatctttta
     7021 atcctagaag ccaatatcat cacagataca aactctcaca agggtatgct tataggaaaa
     7081 gaaggggcaa ctttaaaaag gataggcaaa gatgcacgct ttaaaatttc aaaacttgca
     7141 caaaaaaaag tacttttaaa gcttttcata acagtgaaaa aaaactggca aaaagatgaa
     7201 gaatttttaa aaaaactttt aaatgatgaa aattaattca ttaaataaaa taaattttat
     7261 aaaatctaca gatttgcttt atgctcaaag aacaggaata tccaaagaag acgaactttt
     7321 taacaattta accgcagatt ttaagctaag caaacccttt gactatcaaa tagctttttt
     7381 taaacataat gaaatttatc attgtttttt agcgcctgtt tacaaattga aaaaaagtcg
     7441 tttttgcttt cctgagcctt taatttttca agctttgttt gatgaaagat ttattgagga
     7501 aagtgattat tgtgttttaa atttatatga tcaaacttta tatttatatt tttaccaaga
     7561 aggaaaattt atcaatctta aaaaaatcga aaatttcaat ccaggtaata tggatttatt
     7621 ttttaaacaa aatcgattta cagaactttt aaaacactat gaaagcaaat tgctacttta
     7681 tcaggatttg aatacaatca aacattactt ctcatctcaa ataaaatgtt taaatctaaa
     7741 tgatattctt gataaaaata gtttattgaa attaagttca tatagtataa aaaatctaga
     7801 tcaaaattgt aattttatca agcataataa aataaaaata tctatttctt ttaaaattat
     7861 attaatattt atttttagct ttagtcttag catgatgatt ttattattta aagattttat
     7921 agagtacaaa caaaataagg aaattcaaaa taaaaatttt atcatacaag aagaaatttc
     7981 taaactaaaa caagataagc aaaaattatt aacaaacata caagatttaa actttactct
     8041 ttccaataaa atatcatcta cacaacaaca atttcatatt ttatccacca taacaaaaga
     8101 aatcaattta gacaaaaata aggcaatcat tctaaatcaa atcatatcat ggcttaactc
     8161 caatgacctt aaaatcacaa atcttgaatt tgaacaaaca aaaatcattc tttcttttat
     8221 cgatgaaaac cactttaaaa gagcattaga aaatctaaat tctgctttta aaattcttga
     8281 taaaaatgaa gaaacattta atatcatatt agaagtcata catgaataaa atagaagtat
     8341 ttttgcagaa tttaaatcct agggaaaaat ttctttttat ttcttttatc tgtctttgtg
     8401 ctttgttttt agcttttaaa attcacgatc actttttgga agatattttt caaaaaacat
     8461 tagtagaaca taattacctt gcattaaatg aagcaaaaat agaaaattca catcttaaag
     8521 aaatagagac aaa
//
LOCUS       DARGEX010000068         8377 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.068, whole genome shotgun sequence.
ACCESSION   DARGEX010000068 DARGEX010000000
VERSION     DARGEX010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8377
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.068"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            47..823
                     /gene="surE"
                     /locus_tag="SF010_001270"
     CDS             47..823
                     /gene="surE"
                     /locus_tag="SF010_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG8230193.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            813..1472
                     /locus_tag="SF010_001271"
     CDS             813..1472
                     /locus_tag="SF010_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HEG8230194.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLDKK
                     S"
     gene            1456..1914
                     /locus_tag="SF010_001272"
     CDS             1456..1914
                     /locus_tag="SF010_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8230195.1"
                     /translation="MIRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(1977..2357)
                     /locus_tag="SF010_001273"
     CDS             complement(1977..2357)
                     /locus_tag="SF010_001273"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG8230196.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTVTKITNYEKHGAIF"
     gene            complement(2354..3202)
                     /locus_tag="SF010_001274"
     CDS             complement(2354..3202)
                     /locus_tag="SF010_001274"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG8230197.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3213..4037)
                     /gene="panB"
                     /locus_tag="SF010_001275"
     CDS             complement(3213..4037)
                     /gene="panB"
                     /locus_tag="SF010_001275"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG8230198.1"
                     /translation="MRKSILSFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            4254..5015
                     /locus_tag="SF010_001276"
     CDS             4254..5015
                     /locus_tag="SF010_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HEG8230199.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(5113..5997)
                     /locus_tag="SF010_001277"
     CDS             complement(5113..5997)
                     /locus_tag="SF010_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8230200.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(5994..6668)
                     /gene="modB"
                     /locus_tag="SF010_001278"
     CDS             complement(5994..6668)
                     /gene="modB"
                     /locus_tag="SF010_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8230201.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(6661..7062)
                     /locus_tag="SF010_001279"
     CDS             complement(6661..7062)
                     /locus_tag="SF010_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8230202.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(7059..7808)
                     /gene="modA"
                     /locus_tag="SF010_001280"
     CDS             complement(7059..7808)
                     /gene="modA"
                     /locus_tag="SF010_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8230203.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(7859..>8377)
                     /locus_tag="SF010_001281"
     CDS             complement(7859..>8377)
                     /locus_tag="SF010_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8230204.1"
                     /translation="TFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKFDLIVSNA
                     TLQWLDLKRIILSLRDMLNQNGILLLSTFAKQNLKEIKQSTGFGLNYFSLNELEQIFK
                     VYFNEVKITQELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEKFQNKLTY
                     HPVFILCKNDIK"
BASE COUNT         2993 a         1286 c         1212 g         2886 t
ORIGIN      
        1 aaaaaatatg ttaaaatcca gatttttatc ttttgcaagg aagacaatga aagaaattct
       61 tatcactaat gacgatggtt atgaaagcga aggacttaaa aaactcatta agatgttaac
      121 aaaagaattt aaagccaaga tcaccatagt agctcctgct agtgaaaaat cagcttgttc
      181 gcactctata accctaacca aacctttgcg ttttgttaaa gtgggaaaaa gattttacaa
      241 acttgatgat ggcactccag cagattgtgt ttatcttgct ttgcatgctt tatacaaaaa
      301 gcgtttgcct gatcttgtaa taagtgggat taataaaggt gctaatgtag gcgaggatat
      361 tacctactca ggaacttgcg caggagctat ggaggcggtt ttacaaggaa ttcctgctat
      421 cgctctttct caattttata aaaaaagcga aaaagaacta gactataaaa atgctttaca
      481 aattaccaaa aaaatcattc aaaatatttt tgataaaggt tttcctttgg aaaaaaaaga
      541 atttttaaat atcaattttc ctgcaaaatc aaaaatcaaa ggcattaaaa tttgtaaagc
      601 aggcaaaagg gtttataatt ttgaagccca ttcaaatgtc aatccacgag gagtggagta
      661 ctattggctt gcagcggcga atttagactt tgaagatgag aaaaatagcg atattgcctt
      721 gcttaaaaaa ggctacgcta caataacacc tataatgctg gatcttacag cttatgaaag
      781 aatgaaaaaa gttaaaaaat ggttaaaggc aaatgatgaa tgatagattt acacgtataa
      841 aatggctagt tggagaagaa aaatttcaaa aaatttcaca aacaaaagtt ttggtttgcg
      901 gacttggtgg agtgggtgga atttgcgttg atgcgcttta tcgtagtggt tttaaaaacc
      961 ttactttaat cgatgcggat aaatttgaaa ttaccaatca aaatcgccaa attcatagcg
     1021 aaaatatagg cgaagaaaag gctaaagtat ttgaaagaat ttataaggtt aaaggtatag
     1081 tcagtaaaat cgatgaaaat tttttaaaaa attttgattt aagcgagttt gatcttatca
     1141 tagatgccat tgatgatatt cctgcaaaag tagctttggc tcatcttata gattttaaaa
     1201 aacaaatttt tatctcctca acaggtggag ctagaaagct tgatccaaca cgcattaaaa
     1261 ctacaagtat ttttaaaact cacggcgatg ctttagcgaa aaaatttcgt tatgagctta
     1321 gaaaatcagg ctttaaggga aattttgatg tggtgttttc tgatgaagaa gctcattgta
     1381 aagaccttgg ttcatttatg ggtgtaacag cttcttttgg acttgcttta gcttctttgg
     1441 ctttaaggaa agtacttgat aagaaaagct gatattaaag atttaaatgc ttgtttgtcg
     1501 ctttttgagc aaagcgtaaa aacactttgt gctaaggatt atacaaaaga tcaaatttgt
     1561 gcttggatta aaattgatag acaacaatgg gaagaaaaat ttaaatatga tgagatcttt
     1621 gtctatgaaa aaagaggaaa aatcgcaagt tttataagtg ttaaacaaga gcagaaattg
     1681 cttgatttgc tttttactca tcctgatttt gttagacaag gtttagcaca aaatttactt
     1741 gattttattt taaaaactta tttgcataat gaaatttaca ctttcgcatc cttaagtgct
     1801 aaagattttt tcttaaaaaa tggttttgaa cttataaggg aaaacaaggt tatcaaagag
     1861 ggacaaaatt taaaaaaatt tttaatgaaa aaagatgtgg tttataaaaa ctagaagtta
     1921 agataagcaa aaataatgga ttaaaagata gaaaaaatta caaaaatagc tagatgttag
     1981 aaaatagctc cgtgtttttc ataatttgtt atttttgtaa cagtgttatt ttcatccaca
     2041 aaaacaactt ttggtttaaa tgtttttgct tcttcttcat taaaatcagc ataagacatg
     2101 atgatcacct tatctcccac ttctgcaaga cgagccgcag caccatttaa gcatacaact
     2161 ccttcttctt gcgtggctat ggtataggtt tcaaatctag cgccattatt gacattgact
     2221 acttggactt tttcgtattc taaaattcca ctcgcttgca ataatttttc atctatactt
     2281 atacttccta tataatcaag cctagcttct gttacgcttg cgcgatgtat ttttgatttg
     2341 agtaaagtga tattcatttt aatccttgta ctaaaaaatt atcaatgagt cttgtttttc
     2401 caacaaaagc agccaccgct cctaaaacat tatcagtgat attttcgata ttttccatgg
     2461 tgttaaaatc gactaattct atataatcga ttttgattag tttttctttt tctaaaatat
     2521 ctttcatagc ttggatgatc ttagaagtat ttttttctcc ctctcggact aatttttcag
     2581 ccaaaaaaat gctttgagat atagctagtg acgcttttct ttcttctttg ctaagatata
     2641 catttctaga gcttttagct aagccatctt cttctctaat gataggacaa atttgaattt
     2701 ttaaatcaaa atttaaatca tcaaccatat gcctaacgac tacgcattgc tgcgcgtctt
     2761 tttgccccat atagactata tcagggttta ggatattaaa aaatttagtt aaaaccgtgc
     2821 aaacgcctct aaaatgcccc ggtcttttag ccccgcaaag tttatcagtg atcgtattca
     2881 tatctacata ggtgctaaaa ttcttaagat acatttgagt tgcatcgggg ataaaaacca
     2941 tatcaacgcc attatcttga cacattttaa tgtcgcgttc taaatctctt ggataactag
     3001 aaaaatcttc attaggccca aattgcatag gatttacaaa gatacttact ataaccttat
     3061 cttgtgtttt ggcatgtttg actaaactta aatgtccatc gtgtaaaaaa cccatggttg
     3121 gaacatagcc tatactaagt tgatgtgatt tccaatcttt tacaatttgt tttgcttctt
     3181 tgacagaagt aatgacttgc atatttgtat ccttagtata atttatctaa taattcatca
     3241 tctaaataat caaagctgtg ctcttgggaa ggaaaaatac cgcttttaac ttcatctcta
     3301 tatttttcaa ctcctacttg aggatcaatt ttatcaaaat gctttacaaa ttttgcttta
     3361 aaatctttat ttaaacccaa aagatcgtga taaactaaaa cttgtccatc gcagtatttg
     3421 cctgaaccta tgccgattgt tggaatttct aaaatagagc ttattttttg tgctagtttt
     3481 acaggcacac attctaaaac caacatacaa gcacccgcat cttgcacagc ttttgcatca
     3541 tctataattt tttgggccga ttgtaaatct ttaccttgaa ccctatagcc acctagcata
     3601 tttacagctt gtggggttag tcctaggtga gcaacgacgg gtattcctga ttgggaaatc
     3661 aatttaatct tacttgcgat ttctataccc ccttccactt ttaccccatt tgcgtggctt
     3721 tctttgataa atcttgaggc atttaagata gcgtcacgat ctgaactttg ataagacata
     3781 aaaggcatat cagcaagtac gaaagacttt ttagctccgc gagaaacagc tttggtaaaa
     3841 atcaacattt catccatagt aacacttaaa gtatcttgca tgccaagcac tgtcatagct
     3901 aatgaatctc caaccaatat aatatctata tcgctattgt ctaaaattct tgcactatga
     3961 taatcatacg cacttaccat ggttattttt tcatttttgg cctttttttc caaaaaacta
     4021 agaatacttt ttctcattta aaatacctcg tttagctata aaatagtaag caaaaaacta
     4081 gcatataaat tttcataaat agtaaataaa cgataaaaca aaatatattt aattaatgga
     4141 ttgttttaat ggttacaatt ttagaaaatt tcagttcatg ttaaaggata tttaaagaaa
     4201 ataaagcttt aaaaagtatt ttgtttaaaa ttatttaaat agaaagatat tttatgaaaa
     4261 aaataacttt atttttactt ttcttaaatt tagtgtttgg gcaagataag atattaaata
     4321 attggtttaa agagtataat acaagcggca cttttgtttt ttatgatgga aaaacttggg
     4381 cgagtaacga ctttttaagg gctatggaga ctttctctcc cgcttccact tttaaaattt
     4441 ttaatgctct aattgcactt gatagtggtg tgataaaaac taaaaaagaa attttttatc
     4501 actatagagg tgaaaaagta tttttatctt cttgggcgca agatatgaat ttaagttcag
     4561 ctataaaata ttctaatgtt cttgctttta aagaagtggc aagaagaatt ggtatcaaaa
     4621 ctatgcaaga atatttaaac aagcttcatt atggtaatgc taaaatttcc aagatcgata
     4681 ctttttggct tgacaactca ctaaaaataa gcgctaaaga acaagcaatt ttgcttttta
     4741 gactttcaca aaatagctta cctttttctc aagaagcaat gaatagtgtt aaggaaatga
     4801 tttatttaaa aaatatggaa aatttagagc tttttggaaa aacaggtttt aatgatgagc
     4861 aaaaaattgc ttggattgta ggttttgtgt atttaaaaga tgaaaataaa tataaggctt
     4921 tcgcgctaaa tttagatatt gataaatttg aagatttata taaaagagaa aaaattttag
     4981 aaaaatattt agatgaactt gtaaaaaaaa gttaaaaatg atggctagtg agtatttcgt
     5041 aaaatgcaaa aatacttaat tgtatgattt gcgtacactt aaagtactca ttaaaaaatt
     5101 aaatttttgc tcttatttat caagttttcc tacgatgata gggttaaagg cttttatgga
     5161 tagcaaaagc gtatcgccga tttttacatc ttgataagct tttagaaatt cctcttcact
     5221 aagagtgatt ttaataatat cttgatttaa aagcaaggtt aaaaccacta aaatatcact
     5281 ttttttaatt tctagcaaag ttgcacttaa gcgtaatttt gcgctgatat ttgaatgagt
     5341 aaaaaattca tttttaggaa aatctttaat aatttttccg tttttaagct ctaaaattct
     5401 atgacttaac ttataaattt cagctagatc atgacttacc aataaagtac ttattttaaa
     5461 atactctaaa atcttggtta attcatcttg taaattggca cgcattttaa aatccaaagc
     5521 actcaaaggt tcatctaaaa gcaagatttt tggttctctt gctaaagctc ttgctaaagc
     5581 tactctttgt gcctgccccc cacttaaatg tttaggataa attttagcta aattttcaag
     5641 cttcattaag gctaaaagct cgctaacctt tgctttagaa ctagcggcat aggcgatgtt
     5701 ttcttttata ttcatatttg gaaaaagcgc ataatcttga aaaacaaaac caatttttct
     5761 tttttgtaaa gctaaactaa aattttttga agaatcaaac caaagttcat tatctacttc
     5821 tatacgcccc aatttaggct ttataagtcc cgctatgatt tttaaaagag tggtttttcc
     5881 tgctccactt tcgccaaaaa gtgcagtaat ttttcctgat tctatatctt ttttaaaatt
     5941 taaatccagt cttcctttag cggtattcat aggatgattg atatcaattc ttatcattga
     6001 aaactcattt ttttattgat aaaataaaga ctaaaaagta ctaaaaaaga aaaaataaac
     6061 aatataaaag catattgatg ggctaagcta tagtttaaga tttcaagttc atcataaata
     6121 gctatactag ccactaaagt ttcaccttgt ttatgtcctc ctatcatcat cacgactcca
     6181 aattcaccca cagtatgggc aaaactcatc gcacaagcac taaaaattcc tgctttagaa
     6241 ttaggtaaaa tcactctaaa aagagtataa attttacttt tacctaaact ataagaagca
     6301 tcgagcaaat ttggattgat cgatgaaaag gcactttgca aaggatttac cataaaaggc
     6361 aaagaaaaaa tcaaagaagc aaaaacaaga ccttcaaaac taaaaaccaa agaaagatta
     6421 aaatattctt ttaaaacttg ccctaaaaaa ctattagccg aaaaagttac aagcaaataa
     6481 aatcccaaaa cactaggagg taaaatcaaa ggcaaggaaa taaagctttg aaggattgtt
     6541 ttaaaaggaa aacgcacaaa acttaacaaa taagctaaaa aaacaccgat aaaaaaaagg
     6601 ataaaagtcg tgataaaagc aagtttaaaa gtaagataaa gggtttgtaa aaaagctgga
     6661 tcaagcacta tgactcctta atacaatatc atttgctttt acaaaacaaa gccattcttg
     6721 attttcacaa atttcaagtt ctaaagcttt ttctttggtg ataatactag aaagttcatt
     6781 acctttaaaa tcaaaaaata cctgatataa aagtttgcct tttttaattt ttgtaatttt
     6841 agctaaaaaa gaattttcaa cacttaaaag agttttgctt gcgctaaaac aaagctcatg
     6901 ctctttaaaa agaagttcta cactcacacc aatttttaaa ttttctaaag attttaattc
     6961 aagcattaaa acactaaaaa tcacttcttt agaaagtatt ttaacaataa ctatatcctc
     7021 ttgatttaaa agctcacaaa tttgtccttt tataaggttc atggtgtgct aaatccgtat
     7081 tttttaaaaa tttcttttgc ttttgaagag ccaataaatt cgttaaattc aaaggctaat
     7141 tttttatcct tagcgtattt tgtgatgaca taactttgct ctaaagggct aaaatacttt
     7201 gcatcaatta taacagcctt acccttagga tgattgatag aagaaactaa agaataagcc
     7261 actatagcta tatctgaatt tttgctatct acatgtaaaa caggcactga gatattttcg
     7321 cctaaaacga ttttatcctt aagaagctca tttaaaccca aattttcaag cacttcttta
     7381 gctgctactc cataaggagc tactttagga ttggctatgc ttagatgcgt gattttgttt
     7441 gccttttctt ttaaattttc aacgcctcct tggagtaaat tttcatccaa gctatacaaa
     7501 gccaaaactc ccaaaacata aacttttggt tttattaaag catttttatc atcataaata
     7561 gccttagcat atttagtatc cgctgaaaaa aagagatcaa attctcttcc ttgttttaaa
     7621 agctcataat attttccaga agcaccaaaa accaattcta ttttatcttc tggatgtgtt
     7681 ttcaaaaact catctttaac ttcactcatc gcctttgaag ctgaagaagc tacaaaaata
     7741 cttaaatttt gcgcatttag atgtaaggta aaaaacaaaa tcccaaaaaa tactataaac
     7801 tttttcattt agctttcctt gtgtaaaaat ttaatttttg gattataaca caaaaaaatc
     7861 attttatatc atttttgcat aaaataaata caggatgata agtgagtttg ttttgaaatt
     7921 tttcttcaaa atcttttaaa aaacatttat ttaaaggata aaaacctaaa gaatttaccc
     7981 cgcttaattt taaatgtcta aaaacttcta aagcattatc aaagcttaat tctacgagtt
     8041 cttgagtgat ttttacctca ttaaaataga ctttaaaaat ttgttctaat tcatttaagc
     8101 taaaataatt taaaccaaac cccgtacttt gtttgatttc ttttaaattt tgttttgcaa
     8161 aagtagaaag aagtaaaatt ccattttgat ttagcatatc tctaagactt agtataatgc
     8221 gttttaaatc aagccattgc aaagttgcat ttgaaacaat aagatcaaat ttctctttac
     8281 ttaaatcttg ttttgcaatt tcattcatat caaaaattaa aatattagaa ttttctttaa
     8341 agtttaaaat atcgtttttt aaatacttat taaaagt
//
LOCUS       DARGEX010000069         8019 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.069, whole genome shotgun sequence.
ACCESSION   DARGEX010000069 DARGEX010000000
VERSION     DARGEX010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8019
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.069"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            100..514
                     /locus_tag="SF010_001282"
                     /pseudo
     CDS             100..514
                     /locus_tag="SF010_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            498..722
                     /locus_tag="SF010_001283"
     CDS             498..722
                     /locus_tag="SF010_001283"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230205.1"
                     /translation="MHFVISFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWIN
                     LILLILWLFVGKDENKKEEKRIMQKILFML"
     gene            743..1318
                     /locus_tag="SF010_001284"
     CDS             743..1318
                     /locus_tag="SF010_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230206.1"
                     /translation="MIIFYIGPILFLNSLFTFLPTFYAQYASFSKELADFAKKEIPAL
                     ANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGI
                     FYSMWFPFFFNLPSELKNSNPNQTAYIMSTFWSITFVILSFNLWVVSWSVDKTHSFTL
                     GFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1320..2471
                     /locus_tag="SF010_001285"
     CDS             1320..2471
                     /locus_tag="SF010_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8230207.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2475..3215)
                     /gene="yaaA"
                     /locus_tag="SF010_001286"
     CDS             complement(2475..3215)
                     /gene="yaaA"
                     /locus_tag="SF010_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8230208.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENK
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3308..4426)
                     /locus_tag="SF010_001287"
     CDS             complement(3308..4426)
                     /locus_tag="SF010_001287"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HEG8230209.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASNFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4646..5485
                     /locus_tag="SF010_001288"
     CDS             4646..5485
                     /locus_tag="SF010_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8230210.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5526..6773
                     /locus_tag="SF010_001289"
     CDS             5526..6773
                     /locus_tag="SF010_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230211.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFVRSKIKELSIVF"
     gene            complement(6756..>8019)
                     /locus_tag="SF010_001290"
     CDS             complement(6756..>8019)
                     /locus_tag="SF010_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG8230212.1"
                     /translation="NVIENFKQLCKIPHCSYETEQMKEFLSSYGKDKGFKVSVDKAGN
                     IHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMSAM
                     AEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEASL
                     SFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGGER
                     INSIPKHAKALVHFKDEVKSNDWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRAYD
                     ENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRSFN
                     FYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNIHN
                     PHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         2488 a         1041 c         1347 g         3143 t
ORIGIN      
        1 atataaaaaa aataattaaa ttaaaaaaat aattaaagat aataaatatc ttattttttt
       61 atgtttatat tttaataaat atctaaaaag gattttaatt tggaaaaatc acttttattt
      121 cattttagac gcattggagt tgaatttatc atttttagtg tttatgctgt ttttagtatc
      181 tcttgggcag caacagggtc tttaatgcct ttgatttcaa atgatcttgc cctaaatact
      241 cagcaagcta ctttaatcac tagtatgata gtagttgcga aaatttttgg tgcttcattt
      301 actgcttttt tggtttataa attcggatta aaaaagggat attttttagg ctgtatttta
      361 atgagttcgg gtatcttttt aagttttata gatagttata gtggtatttt gattataaga
      421 tttttaacag ggcttggttc agcttgtgct ttagtttgct tagtgcctat tgcacagcaa
      481 tggtttgaaa aaaagctttg cattttgtaa ttagttttaa tataacttca aatttagtag
      541 gcattactct aggacttatt ttagctgaaa gcatctcaaa ttattttgga aattggagag
      601 attctttatc attttatgct tggattaatt tgattttatt gattttgtgg ctttttgtag
      661 gtaaagatga gaataaaaaa gaagaaaaaa gaataatgca aaagatctta tttatgcttt
      721 aaaatctcgt gttgcttggg gtatgattat tttttacata gggcctattt tatttttaaa
      781 ttctcttttt acttttttac caacttttta tgcacaatat gcgagtttta gtaaagaatt
      841 agctgatttt gctaaaaaag aaattccagc cttggctaat tttgctatta tttttggtcc
      901 ttatcttgga ttatttttta aaagaaaaaa tatctctttt aaaataatgc tattgtctgg
      961 aggagcgtgt atttttatat gcggattttg tatgttgttt ttacaaaatt tagtattgat
     1021 acagattttt gctgtgttat caggcatttt ttattctatg tggtttccat ttttctttaa
     1081 tctaccttca gaattaaaaa attccaaccc aaatcaaact gcttatatta tgagtacttt
     1141 ttggagtatt acctttgtta tactatcatt taacctatgg gtagtatctt ggagtgttga
     1201 taaaacccat agttttactt tgggttttgt ttatattttt gctttgattt ttatttcagc
     1261 gatcttagca caatttgttt tacctagaag agaaaatttt atacaaggag aaaaatagaa
     1321 tgaatttaat tccagaaata ctagacttac aaggcgaatt tgaaaaaatt cgtcatcaaa
     1381 ttcatgaaaa tcctgagctt ggttttgatg aattatgtac tgcaaaatta gtggcgcaaa
     1441 aattaaaaga atttggttat gaggtttatg aggaaatagg aaaaacaggc gttgtggggg
     1501 ttttaaaaaa ggggaatagc gataaaaaaa taggacttcg tgcagatatg gatgctttgc
     1561 ctttgcaaga atgcacaaat ttgccttata aaagcaaaaa agaaaatgta atgcatgctt
     1621 gcggtcatga tggacatact acttctttat tgcttgctgc aaagtattta gcaagtcaga
     1681 attttaatgg cactttaaat ctttattttc aacctgctga agagggtttg ggtggtgcta
     1741 aggcaatgat agaagatgga ttgtttgaaa aatttgatag tgattatgtt tttggatggc
     1801 acaatatgcc ttttggtagc gataagaaat tttatcttaa aaaaggtgcg atgatggctt
     1861 cttcggatag ttatagcatt gaagttattg gaagaggtgg tcatggaagt gctccagaaa
     1921 aggcaaaaga tcctatttat gctgcttctt tacttgttgt ggctttacaa agcatagtat
     1981 ctcgcaatgt tgatccccaa aattcagcag ttgtaagcat aggagctttt aatgcaggac
     2041 atgcttttaa tatcattcca gatattgcaa cgattaaaat gagtgttaga gcattagata
     2101 atgaaactag aaagctaact gaagaaaaaa tttataaaat ttgtaaaggt cttgcacagg
     2161 ctaatgatat agagattaaa atcaataaaa atgttgttgc accagtgact atgaataacg
     2221 atgaagctgt ggattttgct agtgaggttg caaaagaatt atttggcgaa aaaaattgtg
     2281 aatttaatca tcgtccttta atggcaagtg aggattttgg atttttttgc gaaatgaaaa
     2341 aatgtgccta tgctttttta gaaaatgaaa acgacattta tttacataat tctagttatg
     2401 tttttaatga taagctttta gctagggctg caagttatta tgcgaagcta gctttaaaat
     2461 acttaaaata aaaactaatc tagaatttca agcacaattt cttcctttaa acctttgatt
     2521 tgaatttctt tgagttttag gtttgaagga aggtttgcta aaagctcttt attgtttttt
     2581 acttggtttt ttgcacttat ggagagtaaa attcccctat aagctttagc aaaatgactg
     2641 atgactttac cattttttac aaatttataa gtataaaatt tcttttttgg ggtgtagaat
     2701 ttatcataaa atcctgctct aaggtcaagt atttctttat tttctaagta ttcatctaag
     2761 gctttactaa aatgttcttt ataaaatttc tctatggcaa aatttcctat tttagcccct
     2821 tgcttgaatt tataaaaagg tagggtatca ttagctctta caacgccaaa aagattagaa
     2881 aatataagag tattttctaa aatataagct tgactttttt tatctaaagc tttaaaatta
     2941 agatattcat aacttacccc agtataaagc aatatagctt cttgagtggg agcttgtttt
     3001 aagtcgtgtt taaatttatc aatttcattt tcgtttttaa tgccaaaaag ttcttgtaaa
     3061 ttttttaaac ttgcattttt gataaattct ccataatgct ttaaagcttc cattctataa
     3121 ggaaataatt ctttaaatat aaatgagttt tcatcgatgg gattttttgt acaattttca
     3181 tttttgcttt cactagggga gaataaaatt ttcattttag ccttttttgt taatgttatg
     3241 aaaacattaa gagcaaagaa atttaatctt gcttttaatg tttttgaagt ttttatcatt
     3301 ttaaaattta aaatgacgct ccgcccatta acatagaaaa catgataaat ggaagtataa
     3361 tttttaacgc ttctgtggca tcttgattgt tgatgcttag tttttctatg ctgtcgattc
     3421 cctgtgtgct atagtcacta acagggatgt ttttaaattt taaatcaaga ttgagtttat
     3481 aatcatcatt ttgagtgata ttgtttaaaa tagctaaagc tttatcaaag attaatgctt
     3541 gttcttcatt ttgactttga gtttttaagg tttgtaaatt ttccttagca gttgttatat
     3601 agctactaaa tacgccttcg gttttaagag ttgaatcaat tttaaaattg tttaaaatga
     3661 tgtatttttg gattgtattg ctaaaatttg aagcttgttc gtagtttgct atattaagaa
     3721 gttcattgat agcttgttca tccatagcta aagtttgagt gttaaatttt atacccttag
     3781 aatcaaggta attaagcaaa tcttctttta gatttatatt tagatttgta ttgaaattta
     3841 attttgcgtt ataaaatttt atatcaagat tatctagata attgttttct tgtttgttta
     3901 tagagttatc aaatgataaa gtataagaat ccgagcttaa tttattgata aaagatctga
     3961 tttttggatc ttgttgaaat aagcttgcat tgatgtcact aacaactttt tctccaagtt
     4021 taaaatcttc aaaaaccaaa tttgattgta tgcttttttg gtttttaaaa agatcgttgt
     4081 aatattcttt aatgctaatt gatgtatttg cttcgccttt gtaaatttca tttgaacgaa
     4141 ttttgatatt ttttgcttga aatagttctt gatactcatc gttattatct tttgcaagag
     4201 ttttgaaatt tggacttaaa cacgctataa aatcaccatc tgcattgcat ttaaaatcag
     4261 aaaattcaat ctttattcca gagtcctgag aaagacttgc aatttcttgt ttaactgttt
     4321 gatttagttg attttcatat tttttaactg ttttttcatc tatggaattt ccgcaagctg
     4381 aaaacaaaac agctattcca atagagagaa aaataccttt tttcatagtt ttctccttaa
     4441 aaaatttaaa aaaagattat atcttttttt acttaaaatt taaacaatac taaaagagag
     4501 tgtgtgatta attacatttt tacacatagg aaaatctttt tagtttgttt caaatgcatt
     4561 atttataatt ttaagtataa ttaactttgc aattattata tatttttgca acagctttaa
     4621 gcttattttt aaagaaagga aatgtatgaa aaaaatactt ctaagtgttt taacgacctt
     4681 tgttgcagta gtattggctg cttgtggagg aaattctgac tctaaaactt taaattctct
     4741 tgataagatc aagcaaaatg gagttgttag gattggggta tttggcgata aaccaccttt
     4801 tggttatgta gatgaaaaag gaaacaatca aggctatgat atagctttag ctaaacgcat
     4861 agcaaaagaa ctttttggcg atgaaaataa ggtgcaattt gttcttgttg aagctgcaaa
     4921 tagggttgag tttttaaaat caaataaagt agatattatt ttggctaatt ttactcaaac
     4981 tccgcaaagg gcagaacagg ttgatttttg cttgccttat atgaaggtag ctttaggcgt
     5041 agctgtacca aaggatagta atataactag cgtagaagat ttaaaagata aaaccttgct
     5101 tttaaacaaa ggtacaacag cagatgctta ttttacgcaa aattatccta atattaaaac
     5161 tttaaaatat gatcaaaata ccgaaacctt tgccgctttg atggataaaa gaggcgatgc
     5221 tttaagtcat gataatacct tgctttttgc ttgggtgaaa gatcatcctg attttaaaat
     5281 gggtatcaaa gagttaggta acaaagatgt tatcgcacca gcggttaaaa aaggcgataa
     5341 agaacttaaa gaatttatcg ataatttgat cattaaacta ggccaagagc agttttttca
     5401 caaggcttat gatgaaactt taaaagctca ttttggagat gatgttaagg ctgatgatgt
     5461 agtgattgaa ggtggaaaaa tttaataaag ggctttttgc cctttatatt gatttaggat
     5521 aaaatatgca aaaaaaatac aaaaatatta tttatgcttc tttgggtgga attttagaat
     5581 tttatgattt tgtgcttttt gccttttttt tggatatttt tgctaaggta ttctttccgc
     5641 aaaatgatgc tttttggatg cagataaatg cttatatagc ctttggtgct gcttatttag
     5701 cgcgtccttt tggttctatt gtgatggcac attttgctga tagatatgga agaaagaata
     5761 ttttttatat ttctatgctt ttgatggttt tgcctagttt tgctttagct tttttgccaa
     5821 gttatgaaag tataggtata tttgctactt tgattttatt tactatacgc attttgcaag
     5881 gtttagccgt tggaactgag gtgagcggag cttggattta tgtgagcgaa tttgtcaaag
     5941 ggcgtcaaat tcctttagct cttggtttta tttcagcgac tttaaccata ggtttattgc
     6001 taggaaatat tgccacttta ggcataagat cttattttac cccagaagaa gttcaaagct
     6061 atgcttggag aattcctttt atcataggag gattttttgg aattttagct ttgtttttaa
     6121 gaaataaact cagcgaaact ccagaattta taaaagttca aaatgaaaag aaaattttaa
     6181 gttttccatt gttcgaagct ttaaaaactc ataaaatgag tatgcttgtt tgttttttaa
     6241 tgaccatggt tttaacaagc ggtgtggcaa ctttgatgat tttacctaag tattttgaaa
     6301 gtcttttagc tatgagtaaa acttctgctt tatgggtgca aaattttgct attttagcgg
     6361 tgatttttgg agctttattt caaggttttt tagcaagcaa atggggaagc tataggattt
     6421 gttttatttt tagtatagct tttattattt ttggtgtgct ttttagtttt tatgatgaga
     6481 attttttatt ttatttttta ctggcttgtt ttgcacaagg tattattact ttcgcgcctg
     6541 tttttatgac gcaaattttt aaaagtgaac tgaaatttag cgggcttagt tttgcttata
     6601 atatttctta tgcgatttta ggttttttaa ccccttttat agttaatgct ttttataaag
     6661 agtatttggg tatttatctt gctatagtgg gatcttgttc cttgctttgc gtgtttttgt
     6721 taaaacgcgt ttttgtaaga agcaagatta aagaattaag cattgtcttt taaaacttca
     6781 aaaacaacct tagatatttt ttcaactgaa gcgatttcac aatgctcatc agttgaatga
     6841 ggattatgga tatttgggcc tatagaagcg cataaaagct cttgtttttt ctctataatg
     6901 ccacactcaa gccctgcatg gatagctgaa actttggcat taggcgatac ttttttaagc
     6961 gctttaaaaa ccatgtcgct aagtgcgttt ggtttgcctt cccaaggtgg atagaaatta
     7021 aaacttctta ctttaaaatc aaaagccttg aaaaattcta aagtttcaaa ttctacttgc
     7081 ttaagtccat caagtatatt agatcttgca aaaagtgcga atttgatttg gttatcttgc
     7141 attcttaaag tagctaggtt aatgcttgtt tgaactatat ctagattttc atcataagct
     7201 ctaactccat gagtgaaaga atttataagg cttaaaagtt ttttactttg atcgcaaatt
     7261 tcaaattcat tttcttcttt aaattcgcat tttatccagt cgttgctctt tacttcatct
     7321 ttaaaatgca ctaaagcttt ggcgtgttta ggtatagaat tgattctttc tccgccttca
     7381 aaagaaatga tttctccttc attctcttgt atgaatttag ccatttcttt gatggaactt
     7441 ttttcattgc gtatgatatt tatgcctgag tgtccacctt taaaattttg cgcacaaagc
     7501 tcataaattt tacccttttt tctaagggta ttaaaagaca aacttgcttc tatatctact
     7561 ccacctgcac agcctatcat gatctcatca tcgctttcat gatctaaatt taaaagcatt
     7621 ttagattcta aagtgtgctc gagtgaattc actcccatga gtcctacttc ttcatcgttt
     7681 gtaaaaagac attctaaatt ttcaaattca gccatagcac tcatcatgat ggctatacct
     7741 atgccattat ctgcaccaag acttgaattt ttggctctta aaaagccatt ttcttcataa
     7801 acttctaagt ttggtgcatc gcccatacag accatatcat aatggctttg tagacaaatt
     7861 tttggtttgc cttttatggc atggatattt cctgccttat ctacactcac cttaaagcct
     7921 ttatctttgc cgtaagagct taaaaattct ttcatttgtt ctgtttcata actgcaatga
     7981 ggaattttgc ataattgttt aaaattttct ataacattt
//
LOCUS       DARGEX010000070         7934 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.070, whole genome shotgun sequence.
ACCESSION   DARGEX010000070 DARGEX010000000
VERSION     DARGEX010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7934
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.070"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            123..509
                     /locus_tag="SF010_001291"
     CDS             123..509
                     /locus_tag="SF010_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG8230213.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            579..1049
                     /gene="rpsG"
                     /locus_tag="SF010_001292"
     CDS             579..1049
                     /gene="rpsG"
                     /locus_tag="SF010_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG8230214.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            1062..3137
                     /gene="fusA"
                     /locus_tag="SF010_001293"
     CDS             1062..3137
                     /gene="fusA"
                     /locus_tag="SF010_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG8230215.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3166..3242
                     /locus_tag="SF010_001294"
     tRNA            3166..3242
                     /locus_tag="SF010_001294"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3200..3202,aa:Arg,seq:cct)
     gene            3260..3409
                     /locus_tag="SF010_001295"
     CDS             3260..3409
                     /locus_tag="SF010_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230216.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            3415..4116
                     /locus_tag="SF010_001296"
     CDS             3415..4116
                     /locus_tag="SF010_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG8230217.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILANFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIELIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDMKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            4106..4480
                     /locus_tag="SF010_001297"
     CDS             4106..4480
                     /locus_tag="SF010_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG8230218.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4453..5730
                     /locus_tag="SF010_001298"
     CDS             4453..5730
                     /locus_tag="SF010_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8230219.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            5727..6503
                     /gene="trpC"
                     /locus_tag="SF010_001299"
     CDS             5727..6503
                     /gene="trpC"
                     /locus_tag="SF010_001299"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG8230220.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6513..6998
                     /locus_tag="SF010_001300"
     CDS             6513..6998
                     /locus_tag="SF010_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG8230221.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6988..>7934
                     /gene="mnmH"
                     /locus_tag="SF010_001301"
     CDS             6988..>7934
                     /gene="mnmH"
                     /locus_tag="SF010_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG8230222.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDI"
BASE COUNT         2847 a         1029 c         1540 g         2518 t
ORIGIN      
        1 attatgtagg tttattttat aaaaattttt aaaagcattt aaattatttc tagtttatat
       61 ttttataagt aaattttaga tatcatccaa agtttattac atttttaaag aaaggaatta
      121 ttgtgcctac cataaatcaa ttggttagaa aagagcgcaa aaaagtttta gaaaaatcta
      181 aatctccagc gcttaaaaat tgtccacaaa gaaggggagt ttgcactagg gtttatacta
      241 caacacctaa aaaaccaaac tcagcgttaa gaaaagttgc caaagtaaga cttactagtg
      301 gctttgaagt gatcagctat atcggcggtg aaggtcataa cttgcaagaa cacagcattg
      361 ttttagtgcg tggtggtagg gtaaaagact taccaggggt taaatatcac atcgttcgtg
      421 gtgctcttga tacagcaggt gttgcaaaaa gaacagtttc tcgttctaaa tatggtgcta
      481 aacgtcctaa agcaggcgct gcaaaataat cattcataca gacaaatccg ttagatttga
      541 ttttgtttga gtaaaattta aaatttgaag gaaaaataat gagaagaaga aaagctccgg
      601 taagagaagt cttgcctgat ccgatttatg gtaataaagt aatcacaaaa tttattaatt
      661 ctttaatgta tgatggtaaa aaaagcacag ctacaacaat tatgtatggt gctttggaag
      721 ctattgataa aaaaggtggc gagaaaaaag gtattgatat ttttaatgat gcgattgaaa
      781 atattaagcc tttattagaa gtaaaatctc gtcgtgtagg tggtgcaact tatcaagttc
      841 cagttgaagt tcgtcctgct agacaacaag ctttggcgat tcgttggatt atttcttttg
      901 caagaaaaag aagcgaaaga actatgattg ataaacttgc agctgagctt ttagatgcag
      961 caaatagcaa aggtgcttca tttaagaaga aagaagatac ttataaaatg gctgaagcaa
     1021 ataaagcatt tgctcactat cgttggtaag aaggagtgtg tatgtcaaga agtactcctt
     1081 taaaaaaagt tagaaatatc ggtattgctg ctcacattga tgcgggtaaa acgactacat
     1141 ctgaaagaat tcttttcttt acaggcatga gtcataaaat cggtgaagtt catgatggtg
     1201 ctgcaactat ggactggatg gaacaagaga aagagcgcgg gattactatc acttctgcgg
     1261 ctacaacttg tttttggaaa gatcatcaaa tcaatcttat tgacactcca ggccacgtgg
     1321 attttacaat tgaagttgaa agatctatgc gtgttcttga tggtgctgtt gcggtatttt
     1381 gttcagtggg tggggtgcag cctcaaagtg aaacagtttg gagacaagca aataaatatg
     1441 gtgttccaag aatagtattt gtaaacaaaa tggatagaat cggtgcaaat ttctacaatg
     1501 tagaagatca aattcgcaac cgtttaaaag ctaatccagt tccacttcaa attccaatcg
     1561 gtgctgagga taattttaaa ggcgtaatcg atcttgtaac tatgaaagct ttagtttggg
     1621 aagatgatac taagccaacg gattatgtag aaaaagaaat tccagctgaa cttaaagaaa
     1681 aggcagaaga atatcgcaca aaaatgatag aagcagtttc tgaaacttca gatgagttga
     1741 tggaaaaata tttaggcgga gaagaattaa gccttgaaga gattaaaaca gggattaaag
     1801 caggatgttt aagtctttct atcgttccta tgctttgcgg tacagcgttt aaaaataaag
     1861 gggttcaacc tttacttgat gctgttgtgg cttatttacc agctcctgat gaagtggcaa
     1921 atatcaaggg tgaatatgaa gatggcacag aagtttctgt aaaatcaact gatgatggcg
     1981 agtttgcagg acttgcattt aaaattatga cagatccatt tgtaggacaa cttactttcg
     2041 tgcgtgttta tcgcggttgt ttagaaagtg gttcttatgc ttataactca actaaagata
     2101 aaaaagaaag aattggtcgt ttgttaaaaa tgcactctaa caaaagagaa gagattaaag
     2161 tgctttacgc aggcgaaatt ggtgctgttg taggacttaa agatacttta acaggggata
     2221 ctcttgtaag tgaaaaagat aaagtaatcc ttgaaagaat ggattttcca gatccagtta
     2281 tttctgttgc agttgagcca aaaactaaag cagatcaaga aaaaatgtct attgctttaa
     2341 ataaattagc acaagaagat ccaagtttta gagtttctac agatgaagaa agtggccaaa
     2401 ctatcatttc aggtatgggt gagttacacc ttgaaattat cgttgataga atgcttcgtg
     2461 aatttaaagt tgaagctgaa gtaggtcaac cacaagttgc ttatcgcgaa actattagaa
     2521 aaactgttga acaagaatac aaatacgcta aacaatcagg tggtcgtggt cagtatggac
     2581 atgtattctt acgccttgaa ccacttgagc caggtagtgg atatgaattt gttaatgata
     2641 tcaaaggtgg agtaattcca aaagaataca ttcctgcagt tgataaaggt gttcaagaag
     2701 cattacaaaa tggtgtttta gcaggttatc ctgtggaaga tgttaaagta actgtttatg
     2761 atggaagtta tcacgaggtg gattcatctg agatggcgtt taaacttgct gcttctatgg
     2821 gctttaaaga aggtgctaga aaagcaggtg ctgtgatctt agagcctatg atgaaagttg
     2881 aagtagaaac tcctgaagat tacatgggtg atgttattgg agatcttaac aaacgccgtg
     2941 gtcaagtaaa tagcatggat gagcgtggtg gaaataaaat catcacagca ttttgtcctt
     3001 tggctgaaat gtttggttat tctactgatc ttagaagtca aactcaaggt cgtgcgactt
     3061 attctatgga atttgatcac tatgatgaag ttcctaaaaa tgttgcggat gaaatcatca
     3121 aaaaaagaaa cggttaaatt tttagcggga tttttcccgc tttctgtcct cgtagctcag
     3181 caggatagag cgcaaaattc ctaattttga ggccgtgagt tcgaatctcg ccgtggacac
     3241 cattttatga ggtgttatta tgataaaaat tgcttttttt ataacttttg taatttcttt
     3301 tttgacagca caaagcccag taaattttaa agaagataat aatataacaa aagaacaaaa
     3361 tatatttaaa gaacaacctc caaaacgcat taaaattcca acgcattaaa atatatgtca
     3421 gatttgatta cgctagcaca attatcacaa gggtatcgtt acaatagtga ttctttaatt
     3481 ttagctaatt ttattttaaa acaaggaatt aaaggcgctg tttttgatgt aggtgcgggc
     3541 tgtggtatca taggtatttt acttaaaaaa aatattgcaa atttaagttt atctttgatt
     3601 gatattcaaa aagaaaatat agaattgatt gaaaaaaatt taaaatccaa ccaaatacaa
     3661 ggcgatattt ttcatgatga tttcaatcaa tttcaaagca taaaaaaatt tgacttcata
     3721 gtttgcaatc ctccatttta tagacaagga gcttacaaga gtgaagatca gcataaagct
     3781 ataagtaaat ttcaggaatt tttacccttg catagctttt taactaaagc aaattctatg
     3841 cttaagccaa atggtacttt gtatttttgc tatgaagctt tagctttgga tgaaatttgt
     3901 tttattttaa aagatatgaa aataaaaata acaaagcttt gctttgtaca tacacatcaa
     3961 aacaaaaaag caagacttgt tttgatacag gtaaaaaaag gttcaaaatc gccttgtgag
     4021 attttacctc ctttttttgt atatgaaaat gaaattttaa gcaaacaaat gcaagaaatt
     4081 cacttaagat ttaggttaaa aagttatgat atttgataaa aatttttctt atgcttttga
     4141 tgaaaatgct tgtgagaaat gcggtggaaa gtgttgcact ggagaaagtg gcaatatttt
     4201 tgcgagcaag gaagaattag aagcattaag aaagcattta aatttagaaa gcaaagaatt
     4261 tgctgaaaaa tacttgagaa aagtgggctt taaaatgagt tttaaggaag tcgaatttga
     4321 agatggtttt gcttgcattt tttttgatac tcaaaaaaga aattgcagta tctacgattt
     4381 tcgtccaaaa caatgcagaa cttttccatt ttgggaatat tttaaaacac atcaaaagga
     4441 attagaaaaa gaatgtatag gtatttgtta tttgtcttag cagccttttt tttggcagct
     4501 tgtggaagtt caaaaatcaa tgttgtttat cctgattata caaaatataa aagcaatgat
     4561 tttgatttaa gggttatgaa ggcttataat tatgagtatt ataaacaata caaagaagcc
     4621 agagatgaat ttttaagtct ttatcaagat tataataata ctaatttttt agaaaatgca
     4681 tttttactta ctttagcaaa caatcttgac aagcaagcag agttaaataa tctagcaaag
     4741 ccttatttaa atcaaaatga caatcttaag cgacttagtg ctctttatgc tttaaattca
     4801 aatgatatca acaatgctca aaaacttatg aaagagcttt taacaaaaaa ggatagtgat
     4861 cctagaaatt tagagcttta cggggatatt ttggttaaaa aaaatgattt aaaaaatgct
     4921 acaaaatact atagatctgc ttataatcaa gtgcaaaatg aagaaatttt atttaaactc
     4981 ataggaattt atgcgatttt gaatgatact ttaaatatta aaaatgtttt agaattttca
     5041 agaaaaacca atggttgcac tctcaaaact tgcgtcttgc ttgctaaaat ttattttgat
     5101 gaaaaaaata tcgaagcttt aaaaagtata tataaagagc tttatcaact taccaaaaat
     5161 aaaagttttg tattggcttt agttgagctt ttaaattctc aaggcaaaac agaagaagct
     5221 ttaaaaattt ctttgcagta tgatttagat gatgacatta aactcgcttt gtatcagaat
     5281 ttaaaacgct ttgatgatgc taaaaaaatg agtttagctc tttatcataa aacaaaaaat
     5341 aaagaatatc ttctacgagc ggcagttttt gaatttgaag ctgcaaatga agctaaaaaa
     5401 atcactccaa aagtaattga ttctgtaaaa gaaaaattcg aacaggctat cgataaagat
     5461 agcaatgctt tgtatttaaa ctactatgga tatttgctta tagattatga tttagatgtt
     5521 aaaaaaggta tagagcttgt gaaacttgcc ttagaaaaag atccacagaa tttgtattat
     5581 ttagattctt tagcttgggg gtattataaa ctaggcgatt gtaagcaagc atgggaaatt
     5641 ttaaaacaaa cattagatga taaagaattt gcaaattctg atgagagcaa agctcatata
     5701 aaagcgataa aggcgtgtat aaaaccatga tattggataa aatttttgaa aaaacaaaag
     5761 aagatttaaa agaacgcaaa ctaaaacttc cttatgatat gttagggcgt tctttagctt
     5821 caaatccttt ctttccaaaa gatgtgatta aggctttaaa aagagtagaa aaagaagtta
     5881 aaatcatagc agaagtaaaa aaagcaagcc ctagcaaggg agtcattaga gaagactttg
     5941 atcctttgag tatcgcttta aattatgaga agaacaaagc tgcggcgatt tctgttttaa
     6001 ctgagccgca tttttttaaa ggttctttag aatacttaag tcttatacgc cgttatacgc
     6061 aaattccttt acttagaaaa gattttatct ttgatgagta tcaaatttta gaagctttgg
     6121 tttatggggc ggattttgta ttattaatcg ctaaaatgct aagcatgaaa gagcttaaaa
     6181 aactgcttga gtttgcaaga catttaggtc ttgaggcttt ggttgaaatt catgataaag
     6241 aggatttgag taaggctatt tttgctggag cggatatcat tggtatcaat catcgtaatt
     6301 tagaggattt tactatggat atgagtttgt gcgaaaaact tatcccacaa atcccaaatt
     6361 caaaaatcat catcgcagaa agtggtttag aaaataaaga atttttagag catttgcaaa
     6421 atttaggcgt tgatgctttt ttaatcggcg aatattttat gcgcgaaaaa gatgaaggaa
     6481 aggctttaaa agctttgctt taaggaggga aaatgcagta tttgtatgca ccatggcgga
     6541 gtgagtattt tgaaaaagaa aaaagcattt gtccattttg tgattgtgct aataagatca
     6601 aaagcgatga agaattaggc gtgattttta gagcaaagca ttgttttgga gtgatgaacc
     6661 gctatcctta ttctgcaggg cattttatgg tgattcctta tatacatgaa gagcatatag
     6721 aaaatttaag tgatgaaatt tggcaagaaa tgagttattt tgtgcgtttg ggggtaaaaa
     6781 ttttaaaaga gcaaattcat gcaaatggag tgaatatcgg tatgaattta agcaaggatg
     6841 caggagctgg catagctttt cattgtcatt atcatctagt gccacgctgg tcaggagata
     6901 caaattttat cacaaccata ggagaaacta gggtttgtgg cactaatata gagcaagttt
     6961 atcaaaaact tgttttggct tttaaaaatg ctcagtgaag ttgaatttgt agagtttcaa
     7021 aaagaaaatt tctctttttt aatcgatgca agaagcccta gagaattttt gcattctcac
     7081 ttgataggag ctttaaattt ttatgcactc aatgatgaag aatatcaaga aataggaaca
     7141 atttataaga aaaatcaagc tttagctaag gctatgggtg cgagttatat ttgtcaaaat
     7201 accgctaagc atatattaga aatcactcaa aattttcgca taggagaaaa ggtggggatt
     7261 tattgttctc gtgggggttt gcgttcaaag tctatcgcag tgattttaag tgagcttggc
     7321 tttagggtgg tgcgtttaaa aggtgggttt aaagcttata gaacttttgt aacgcattat
     7381 ttcgaaaatg aaataaattt tgattttttt gctctttgtg gtaatacagg ttgtggaaaa
     7441 acagagcttt tagaacaact cccacaagct ataaatttag aaaaaatggc aaatcattta
     7501 ggctcgtctt ttggtgatat tttaggaaaa caacctacgc aaaaagcttt tgaagcagaa
     7561 ctttttcaca atattcaaaa tttagaaaat tttgctttca tagaaagcga aagtcgcaaa
     7621 ataggggata ttatcttacc tttgaaattt tatgaaaaaa tgcaaaaggc ttttaaaatt
     7681 tattgttttt gttctttgga aaatcgcgtt agaagaatac aaaaaattta tcaagaaaaa
     7741 atgactcctt tgaaatttca acaatgtgtg caaaaaatca gtccttatat cagcttaaat
     7801 ttacgccaag atttgcttca aagttatgag agaaaagaat ggcaaaagct tattgttatg
     7861 cttttggagt attatgataa aacttataaa aaaccagata agattgatct tgagttaaat
     7921 actgatgata tttt
//
LOCUS       DARGEX010000071         7599 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.071, whole genome shotgun sequence.
ACCESSION   DARGEX010000071 DARGEX010000000
VERSION     DARGEX010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.071"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            99..458
                     /locus_tag="SF010_001302"
     CDS             99..458
                     /locus_tag="SF010_001302"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG8230223.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
     gene            473..1099
                     /locus_tag="SF010_001303"
     CDS             473..1099
                     /locus_tag="SF010_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG8230224.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLSSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIIGLKDIFNL"
     gene            1181..2470
                     /gene="cetZ"
                     /locus_tag="SF010_001304"
     CDS             1181..2470
                     /gene="cetZ"
                     /locus_tag="SF010_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG8230225.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLEDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYNDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2493..3140)
                     /locus_tag="SF010_001305"
     CDS             complement(2493..3140)
                     /locus_tag="SF010_001305"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG8230226.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKIAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(3115..5244)
                     /locus_tag="SF010_001306"
     CDS             complement(3115..5244)
                     /locus_tag="SF010_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8230227.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIHDSRSYSSYLLKKHNINLNKIQELQNHENIQNLSNHTSDLTLLAQNGTIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAKKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLVKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKSLAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            complement(5241..5531)
                     /locus_tag="SF010_001307"
     CDS             complement(5241..5531)
                     /locus_tag="SF010_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG8230228.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDSAKLANFPLQAKVEEE"
     gene            complement(5531..6133)
                     /locus_tag="SF010_001308"
     CDS             complement(5531..6133)
                     /locus_tag="SF010_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8230229.1"
                     /translation="MKKILALILISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            complement(6144..6596)
                     /gene="smpB"
                     /locus_tag="SF010_001309"
     CDS             complement(6144..6596)
                     /gene="smpB"
                     /locus_tag="SF010_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG8230230.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGRNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            complement(6593..7360)
                     /locus_tag="SF010_001310"
     CDS             complement(6593..7360)
                     /locus_tag="SF010_001310"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG8230231.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSMQLGSDIAFFLSGFHSANVSGCGEIIKEF
                     EDDIPNLKWTFPQIFCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDQ"
     gene            complement(7357..7584)
                     /gene="csrA"
                     /locus_tag="SF010_001311"
     CDS             complement(7357..7584)
                     /gene="csrA"
                     /locus_tag="SF010_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG8230232.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
BASE COUNT         2474 a         1062 c         1133 g         2930 t
ORIGIN      
        1 tttttgcatt taaaactttc ttgaaaatta taaaaattta tcatttaaaa ttgaaaattt
       61 aattatataa tataaaaatt attttacaag ggtagatcat gaaagaatta aatgaagaag
      121 aaaaaaaagt aattttaaat aaaggaacag aagctccttt tagtgggaaa tataatgatt
      181 tttatgaaaa aggaatctat caatgcaagc aatgtggagc ttcgctttat aaatccgaag
      241 ataaatttaa atcaggttgt ggatggccta gctttgatga tgaaataaaa ggggctgtta
      301 aaagaattcc tgataaagat gggattagaa ccgagattgt atgtgcaaat tgcaatggac
      361 atttaggtca tgtttttgaa ggagaaggat tttctgctaa aaatgtaaga cattgtgtaa
      421 attctatttc tttggaattt gtaaaaacta aggattgata gtgttttcta gtatgggttc
      481 tgagctttat ttgatgtttt ttgctgcaat tactttactt gctatattaa atccttttgg
      541 taatttaact caatttttgg ctatgagtga tggattgcct ttaatgcttc gaaaaaaact
      601 ttttagaact attctctata cagcttttac tatagttttg gtgtttttat catcaggacc
      661 tttatttatg aactatattt ttagagtttc attggatgat ttaagggttt ctggtggttt
      721 ggttcttatt ataatggcta ttaaaaattt acttttttca acaaaaattg caactaagga
      781 ttttagttct tatcaagata tggatgataa ggaaatttta agacagagtt taatacctat
      841 ggcatttcct atgcttgttg ggcctggaac tttagctagc gttattgtta tagccgaaga
      901 tggtgggctt gatgttgctc ttggtggggt gatgatagct tttattttta tgtttatact
      961 ttttcatttt gcagctacta tagaaaaaat agttggaaaa ctgattttac atgttttttc
     1021 tcgtatagca caagtattta ttgctgctat ggggtttaag atgattatta taggtttaaa
     1081 ggatatattt aacttataaa ttaatataat tttaagtaaa taatactata taaactatga
     1141 tataatttta aaataattta ttattaaaaa ggtgagtttt atgtttggtg ctaagaaaaa
     1201 taatactgaa ataattgaac aacttgaaaa aaagtgtaat ggtttagaag atattttaag
     1261 atctattggg aatactatgg cggtaattga atttaccacc gatggcgtta ttttagaggc
     1321 aaatcaaaat tttttaacaa ctatgaaata ctccctttca gagatcaagg gtaagcatca
     1381 tagtatgttt tgtttgcctg aagttgttaa ttcttcagca tataatgatt tttggaaaga
     1441 tttaagagat ggaaaagcta gaagtggtct ttttagacgt atagctaagg gagggataga
     1501 tgtttattta gaagcaaatt atcttccaat tagtgataat aatggttatg tttataaaat
     1561 tattaaattt gccaatgata taactcaaag acattatgaa atgcttgatc ttagaaatac
     1621 tattgctgct gctaatcgtt ctatggctat tattgaattt aaacctgatg ggactattat
     1681 tacggctaat gaaaattttt taagaactat ggattttaat attgatgaga ttaaaggaaa
     1741 gcatcatagc atgttctgtg attctaatta tagacactct aaggactatg ttcaattttg
     1801 ggaagattta agagagggca aatttcaatc aggtaaatat ataagatacg gaagaaataa
     1861 taaaaaagta taccttgaag caagttataa tccggttaaa aatgatgatg gaaaaattta
     1921 caaggttatt aaatttgcta cagatataag cgaacaagtt aaaaaagatc aagaaaaact
     1981 ttgcctcata agcgaacttg cagaaaaaaa tgataatctt actcaagatg gagatcgtgt
     2041 aattgaaaac actgtttcaa atgttcagaa tattgctgat atgatgtctc aaagttcaaa
     2101 tcttgtttcc tcattaaatc aacaatcaga tgaaattaaa tctattattc agactattag
     2161 tgatatcgct gatcaaacta atctgcttgc tttaaatgct gctattgagg cagcacgtgc
     2221 tggtgaacat ggtagaggct ttgctgttgt tgctgatgaa gtaagaaatt tagctgaaag
     2281 aacagggcat tcggttaatg aaattaccac tacgattaat tctattcgta atgttacatc
     2341 acaagtggtt gagagtatta aaagcggttt agaggatgtt aatcagagtg ttgaacttgc
     2401 aaaagaagca agagagtgta tggagaaaat tcgtgaaagc tctgctgaag ttgctaaagc
     2461 gatgtcataa gcgtgatttt cacgcttatt ttttaagtaa ttaaatcttt aaaattttta
     2521 aaaccacttt cttggttgca tttttctttt aaaatattta aaaattcttt cctagaaata
     2581 ttatgagcgc ccataaattc taaatgttgg ttataaactt gacaatctat gataaaatca
     2641 taaggtttta ataaatcaca aagtttaatc atagcaattt tagatgcatt ttttttaatg
     2701 cttaccatgc tttcaccaaa gaaaaccttg cctaaaatta aaccataaat tccacctata
     2761 agttcattat tttcataaag ttcaaggcta tgtgcatagc cttgggtaaa taacttataa
     2821 taagtggtaa taaattcatc atctatccag ctttgagagc gtgtatcgcg acataatgta
     2881 attaatttta aaaaatcata atcaagttta atttgataga gattaataaa ttttttcata
     2941 tttttttgga tgtgaatttg atttggaatt aaaatgcatc taggatctgg acaccaccaa
     3001 gttacaggtt tacttgtcca tgggaataga ccaaaagtat aagcttttac aataaaatca
     3061 gcttctaaat tttgacttaa aaatacagga gcatttttag gtgcattgag taatttagaa
     3121 tataaattcg agctttccat ttttaccaag tttgatttta gctataccgc cttttttaag
     3181 ctttccgaat aaaatttcat cactgatttt ttctcctatc tcctcagaaa ttatgcgttt
     3241 taaaagcctt actccaaatt ctttattata ggctttttta gctaaataaa ttttagcttt
     3301 atcatccact gataacttta tattatttaa atttttagaa atttcatcaa gttctttttc
     3361 gataatttta acaagtatag catcgtttaa atcattaaaa tgtaaaattt tatcaatacg
     3421 attaataaat tctggagcaa aaaagtcttt gatagcacga ttactttttt cttcattttt
     3481 acttaaaaaa ccaagctcat tgctttcttt aagtcctaga ttagatgtca taataatgat
     3541 tgtattttta aaatctactt taagaccgct attgtcggtg agttcagcat tgtcaaaaat
     3601 ctgtaaaaag gtattgctta aatcaggatg agccttttct atttcgtcaa aaagaacaag
     3661 actgaaagga tttttgcgaa tagcattgct taaaagtcca ccctcttcaa aacctatata
     3721 tccagctgga gatcctatta gtttacttat agcatgtttt tctgcatatt cactcatatc
     3781 aaagcgttct aaatttaaac ctaaaaattc agctaaagat ttgcaaagtt ctgtttttcc
     3841 aactccactt gatccagtaa acaaaaacac tccgcgtggt gtattggaat ttttaaatcc
     3901 tgcgaaactt tgcttaagtg atgaaacaag gctatctata acttcatctt ggccaaaaat
     3961 ttttgctttt aaatttgttt ttaaattcat taaagctttg ttttgatcga attcaaacat
     4021 tttatgatgg tgggtcattt ttactaaaac attttctaaa tcttttaaat tggcattttt
     4081 tttagctttt ggatttaaag caaaagaagc cccaagttca tcgatcagat ctatagcaca
     4141 atcaggtaaa aatttatcat taaaaaattt tttaccccaa attacagcat attgaagaat
     4201 ttcatcgttt aattttatat gatgaaattc ttcatatttg ttttttaatc ctttcagaat
     4261 ttgcaagctt tcttcttggc ttggttcatc tacatttatt ttagcaaaac ggcgacttag
     4321 gggtttattt ttatcaaaag tatttttata ttccataaaa gttgttgcac ctatgcattt
     4381 taaagttcca ttacttagag ctggttttaa aagattggaa aaatcagtat gagattctcc
     4441 tgtacttcca gctcctacta tagtgtgaat ttcatcaata aataaaatag cattaggtat
     4501 tttctcaagt tcatttaaaa tttctttaat tcttttctca aaatctccac ggtattttgt
     4561 tcccgcaagt atactagcca tatcaaggct aaaaattttt gcattttgta agtttttagg
     4621 cacctttttt ttcgcaatag ccaatgctaa tccttctaca atggccgttt tgccaactcc
     4681 tgcttctcct actaaaatag gattattttt cttgcgacgt gaaagaattt gcatcattct
     4741 ttcaagttca aattttcttc ctattaaagg atcaatcgtg ccattttgag ctaaaagtgt
     4801 taaatcactt gtgtggttgc ttaaattttg tatattttca tgattttgaa gttcttgaat
     4861 tttgttaaga tttatgttgt gtttttttaa gagatagcta gaataacttc ttgaatcgtg
     4921 tatgagcttt tctaaaaaat ctataatttt aatttcatta tttttatttt tagatgaaag
     4981 taagatttca tctaaaacaa cagatattgt aggttctatt tcttgtttaa taacttgatt
     5041 gttttgagaa atgtaatttt ttaattcagt ttctagaagt tcaagatctc catctgaaaa
     5101 ttcttcaaat atatccttaa aatcagtgct tagttttagt aatgcaaaca gtacatgctc
     5161 acaggtaaca aattcatggt ggtttattaa gcttagattt ttggcattat caagatattt
     5221 ttgtaaattt tcttggtatt tcattcttct tctacctttg cttgtagcgg aaaattggca
     5281 agtttagccg aatctataac ttttttttgt tttgaaagag ctatttcctg ggtgtaaatg
     5341 ccacaaattc cagaaccatt gtggtgaatt tctaacattg tttgacttgc tttctcaagg
     5401 ttttgatgaa aaatattcat caaaatttct ataacaaaat ccatggttgt tacatcatca
     5461 tttaagagta taactttata catttttggt tcactaagtt ttgtttgctc tagagtttgg
     5521 gtttttggca ttattttcct ttgtagattt tatttaaatc ttcttgcatg agttctgttg
     5581 gaattttacc aagataaaaa tttgttggag tattattatt ccagtaatcg cttatttttt
     5641 gataaattcc attttttaaa acaactttaa aaggaagttg ctccatattt tgatagtcta
     5701 tatcttttaa aatttgagca ataatacgat cattagagct gccattgctt agaaaatagt
     5761 aagcaccata atcatccgcg aattttttaa ctgtttcatc gctaacatct tcaaaatgtg
     5821 taagtcctat aatgataaat ttgctagaat tatttttcca aagtttgcta agatctaaag
     5881 cttcttcttt acatggggtg caaaaagtgc caaaaaaatc aaacattaga acttttcctt
     5941 cctctccttc taccacaaaa cctttatctg ttcttattaa agttttgctt ccaccattta
     6001 cactatttaa gactatttta tctcctttgt gatactcttc aaacataaaa tcattttgaa
     6061 tttcttcttc cttggagcaa gcattaagaa aaaatgctaa acttattaaa attagggcta
     6121 aaattttttt catttatttt cctttatttg taatttttca tagcagcttt agcttctaaa
     6181 tcggcttgct ttttctttaa agtttcacgc ttgtcgtgca aatttctccc tttagctaaa
     6241 gcaagggtag cttttacttt attttttgtg ttaaaataaa gatctaatgc aacgatagta
     6301 tatccttcta tacttacttt acctaataat ttatcaattt gctttctatg cattaaaagc
     6361 tttctagcac ctctttcttc gtgtttatag aaagaatgtg tagtatgaag caatgaaata
     6421 tgagaattaa gtaaaaaaat ctcatttttt ataatgcgaa caaaagagtc tttaagattt
     6481 gctcttcctg ctcttaaggc tacaacttca cttcctttaa ggacaattcc ggcttcaaag
     6541 cgttctatga tgctataatc aaataaagct tttttatttc tcgcaataat tttcattgat
     6601 caaccttaaa aacactacta ccgctaccgc ttagaaaaaa atcttcttgc aagtaagact
     6661 tcattttagg atataaagtt gcacaaggag taaataaatc atttaattct ttgtttttaa
     6721 agttttgtaa caactctttt gtgctgagtt ttttgtagat ttgcgcttga ttattgtttt
     6781 tttgaaagtc aaatatttct ctatcaaatt catcataaac agctttagtt tggcaaaata
     6841 tttgtggaaa agtccatttt aaattaggta tgtcatcttc aaattctttt ataatttcac
     6901 cacagccact tacattagca gagtgaaagc cacttaaaaa aaaagcaata tcacttccta
     6961 gttgcatgct taaatttata agttcttgta ggtttaattt taaatttagg gtttcattta
     7021 ttagcagtaa aaaactcgca caatcgctac ttccaccgcc aagtccagca catactggga
     7081 tattttttgt gagttttagg ctttttttgc taaataattc ttttaattcg ttattatatc
     7141 ttttagaaag tagcaaataa gccttttgaa taatattatt ttcgcattta aaattactaa
     7201 tgatttcaaa ttctttttta gagtctgatt ctttatcaac aagctcaagc tcatcaaaaa
     7261 gatcttttaa aagtataaat cgtgattcta aaagatgata ttttcttgag tcaaaaccgg
     7321 taagttttaa aaaaatattt gctttagcgt aagctttcat ttgattagtt ttttgcttaa
     7381 gtcatcaagt ttaatatcat tctgaacaac agaatgtaaa ttttcatcct ttacttgttg
     7441 aacaagttct tttctaagta tcataaggga ttttggagct tctatgccta ttttggcata
     7501 tcctttccct gtttgaacga ctttgatttc tataccttct ccgataatta tactttcatt
     7561 ttcttttctt gataatatta acatttttca accttattt
//
LOCUS       DARGEX010000072         7337 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.072, whole genome shotgun sequence.
ACCESSION   DARGEX010000072 DARGEX010000000
VERSION     DARGEX010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.072"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(14..646)
                     /locus_tag="SF010_001312"
     CDS             complement(14..646)
                     /locus_tag="SF010_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8230233.1"
                     /translation="MKIAILTSPNQWFIPYAKELNQQIKNSKLFYNHTEIFNFDIVFI
                     LSYHKIIDKNFLKHNKHNIVIHASNLPQGKGWAPLFHQVIEGKNEIAFSLFEADDKAD
                     NGDIYLQKNLKLNGLELYEELREKQARFTLDMCLEFLELYPDIQAKKQVGKESFYPKR
                     SPKDSELDINKSLNEQFNLLRIASNEDFPAFFYKDGKKFILKIYPDSIDR"
     gene            complement(643..1146)
                     /gene="pseH"
                     /locus_tag="SF010_001313"
     CDS             complement(643..1146)
                     /gene="pseH"
                     /locus_tag="SF010_001313"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG8230234.1"
                     /translation="MIGLKDFTHLNGNEILLIWQWRNDEKISQFMKTKYIDFQEHLNF
                     ITSLKKDQSKKYFLVFKDDGAIGVIDFINIMQDSCEFGLYAKPDLKGIGQILIQEIKK
                     YAFENLKIKELKACVFKQNKKALDLYLKNGFYIKNEDKNMFYVEFMGGGIVKFQPKLL
                     IIKRLAV"
     gene            complement(1143..1964)
                     /gene="pseG"
                     /locus_tag="SF010_001314"
     CDS             complement(1143..1964)
                     /gene="pseG"
                     /locus_tag="SF010_001314"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG8230235.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIRDEFYKESKIEREKIWDY
                     FICIGGTDIKNLSMQIASDLPKNKKIAIATSSSNKNLKKLEKFIQNHENVKLFIDEEI
                     SKLMNESTKLIISASSLVNEALLLKANFKAVCVAKNQEKLANWLVQKGYEVEYRL"
     gene            complement(1948..2646)
                     /gene="pseF"
                     /locus_tag="SF010_001315"
     CDS             complement(1948..2646)
                     /gene="pseF"
                     /locus_tag="SF010_001315"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG8230236.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EIVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKNILKQAYEKFIQNESKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            2738..3949
                     /locus_tag="SF010_001316"
     CDS             2738..3949
                     /locus_tag="SF010_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8230237.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INDILKNINLGHLSVNKDNFEQIIPLIEQKVNEMKQAGLVDENQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINVLKDLVKKFPNFKNLPKIYGGGSYGGYLSLLIAKIAPWHVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            complement(4262..5281)
                     /locus_tag="SF010_001317"
     CDS             complement(4262..5281)
                     /locus_tag="SF010_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HEG8230238.1"
                     /translation="MNLKLNSHNIKAISIVLPKNPHTLEKELQECNLNQKKYELLKQN
                     TGINHHFISPNNIYASDLASKALEKLFRENLLLKDELDVLLVYSFSPDFLAPALSSLI
                     HKNLGLSEKTLCFDNIAFCPGFLQGLMQAFSLLDNENIKKIAFICVSVKSKKIPKKDK
                     ITYLSNSDSASVILLEKSNTKEKAFFSQKIFSKLATEETFPLKCFKEANDFIDMDKNL
                     TFSHLNENFPRFFDDFFDNFKLDKSKIGEFFFGSANNFIKTKLLELLNFKEIKNDETL
                     KNYGDVTINKLAFDLANYEWRKGGGIKQVFMASFGTGITFNAMSLKIDFSKIKNFIEI
                     IDFNT"
     gene            5382..6452
                     /locus_tag="SF010_001318"
                     /pseudo
     CDS             5382..6452
                     /locus_tag="SF010_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(6449..6676)
                     /locus_tag="SF010_001319"
     CDS             complement(6449..6676)
                     /locus_tag="SF010_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8230239.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLELAMKD"
     gene            complement(6678..>7337)
                     /locus_tag="SF010_001320"
     CDS             complement(6678..>7337)
                     /locus_tag="SF010_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl transferase"
                     /protein_id="HEG8230240.1"
                     /translation="IANDFFRQEVNFVKNIENLDDFFKNLKNCLIISANNFYIFKKEC
                     IQKNTIINYHNALLPFHRGCNAHIWSIWENDKKTGITWHMVKESIDTGDILVQKEIKL
                     DNNCTALSLLNAQHKLALTLFREALEILKNKAFKMQISGGGYHKKLSLPNNGYLDLTW
                     NKEKISRFLRAMDCGALSGVPKARLEILGEEREILFYEINELDLILNLSDNVILKITK
                     E"
BASE COUNT         2506 a          999 c         1100 g         2732 t
ORIGIN      
        1 attatttaga cctttatcta tctatggaat ctggataaat tttgagtata aattttttac
       61 catctttgta aaaaaatgct ggaaaatctt cattgctagc tatgcgtaag agattaaatt
      121 gttcatttaa acttttattt atatcaagct cgctatcttt tggacttctt ttaggataaa
      181 aactttcttt gcccacttgt ttttttgctt gtatatcggg ataaagttct aaaaattcta
      241 aacacatatc tagagtaaac cgagcttgtt tctctcttag ctcttcatat aattctaagc
      301 catttaattt aaggtttttt tgtaaataaa tatcgccatt atcggcttta tcgtctgctt
      361 caaaaagcga aaaggcgatt tcatttttgc cttctatgac ttgatgaaaa agtggagccc
      421 agccttttcc ttggggtaaa tttgaagcat ggatgacgat attgtgtttg ttgtgtttta
      481 gaaaattttt atctatgatt ttatgataag aaagtataaa tactatatca aaattaaaaa
      541 tctctgtatg attgtaaaaa agcttggaat ttttgatttg ctggttaagt tctttagcat
      601 aagggataaa ccattgatta ggcgaggtaa gtatggctat tttcatactg ctagcctttt
      661 tataataaga agtttaggtt gaaatttgac tatacccccc cccataaatt ctacataaaa
      721 catattctta tcctcatttt taatataaaa accatttttt aaatataaat ctaaagcctt
      781 tttattttgc ttaaaaacgc aagcttttaa ttcttttatt tttaaatttt caaaggcgta
      841 ttttttgatt tcctgtatta aaatttgccc tatgcctttt aaatcaggct ttgcataaag
      901 tccaaattcg caagaatctt gcattatatt gataaaatca atcacgccaa tagccccatc
      961 atctttaaaa accaaaaaat attttttact ttgatctttt ttcaagctag taatgaaatt
     1021 taaatgctct tgaaaatcga tatattttgt cttcataaac tggcttattt tttcatcatt
     1081 gcgccattgc catataagca aaatttcgtt tccatttaaa tgagtgaaat cttttaagcc
     1141 tatcaaagtc tatactccac ttcatagcct ttttgaacta gccaattggc tagtttttct
     1201 tgatttttag cgacacaaac ggctttaaaa ttagccttta aaagcaaagc ttcattgact
     1261 aaagaactag cactgatgat aagctttgtg ctttcattca ttaattttga aatttcttca
     1321 tcgataaaga gctttacatt ttcatgattt tggatgaatt tttcaagttt tttgagattt
     1381 ttattggatg agcttgtagc gattgcaatt tttttatttt taggcaaatc agaggcaatt
     1441 tgcatggaaa gatttttgat atctgtgcca cctatgcaaa tgaaataatc ccaaattttc
     1501 tctctttcta tcttgctttc tttataaaat tcatctctaa ttaaagcata agaaaaccca
     1561 catcttactt cgcatttaaa aggcactaaa ccttcataat cacttgcttt tgcataggca
     1621 ttgacattga gtaaaatatc acaatgatga ggctttattt catcatcaaa gcttagaatt
     1681 ttcacccctg tttcaagctt gatcagtttt tcatcatcta cgctgatgcc atagtgatca
     1741 atgataagaa gttcaaattt ttcttctttg atgagattga taagttcgta aatgctttca
     1801 ctatcaagct cataaacagg ataaggaatt tcatcgatca aagagccttc taaaggcaaa
     1861 caagcaaaac ttacatcgct atattgttta gctaagacta gatcacgttt aatgtgtcca
     1921 aagcctattt gactggagct atcgcttcta aaaagcactt tcatgattta ccttataaag
     1981 tatttttgca aattctaaat cttgtatggt atctatatcg caaactaaat ttcttggcaa
     2041 tacaaataca ctagaatgag gtttaaatat aaaatcttct tcaagccaag ctttacttgt
     2101 gccaaaataa aaagctcctg catcgtgata agcttttgtt aagtcttgtg aacgactttt
     2161 ataatgtttt tcatcaaaca tataaacttg attattctca tttagataaa aagccctttg
     2221 tataggatac tcaaactcag tggcggcaaa taaaaacttg ctttcatttt gtataaattt
     2281 ttcataagct tgttttaaaa tgtttttatt taaaagcgga gcagtagcat aaagacaaca
     2341 gacatgatca taaatttgat tttggctttg taaaatttct atggcatttt gcactgcagc
     2401 agtgcttgaa gcataatcat cgcttaaatt tttatcacgc acaaatggag cttttgcacc
     2461 gtattttaag gctacttcta tgatttcttc atcgtcgctt gaaagtacta tttcatcaaa
     2521 aatacctgaa tttaaagcat tttctatgct ataagcgatt aaaggtttac ctagaaaatc
     2581 aatgatattt tttctaggaa ttctttttga tccaccacga gcagggatta tgcaaagatt
     2641 tttcatagtt aagccttgtt ttttgtgttt tattttacta aaatttaagt ataattgtct
     2701 ttaaaataca ataaaataat gcaaatgggg tggaataatg ctcataaatc aaacctttga
     2761 aattgattct tgtgatgatg tagaattaaa tataaaaaga actagcaaac ttgaataccg
     2821 cattagctat gatgatgaaa aagatatcaa agccatagtt tttatagtgg gtggttttgg
     2881 agctaatgca aatatttctt ttttagattt tgatagggaa tatattgcta aaaattttga
     2941 tgttgtagtg gtacatgttt tttatcattg tttttgtgca agacaaagta ttgatcaaaa
     3001 gtataatcca aagcttattc ccaatcaaga tgatttagag cgtatcaatg atattttaaa
     3061 aaatattaat ttaggacatt tatcggttaa taaagataat tttgaacaaa ttattcctct
     3121 tatagagcaa aaagttaatg aaatgaaaca agcaggtttg gttgatgaaa atcaaaaaat
     3181 agaactttct tgtgatttta tcccacctaa tggagattat caaaactatg gcattatggc
     3241 agctattgat catatcaatg ttttaaaaga tcttgtaaaa aaatttccaa attttaaaaa
     3301 ccttccaaag atttatgggg gaggatctta tggaggatat ttatctttac tgatagccaa
     3361 gatagctcct tggcatgtag atggtgtgat tgataattcg ggagtttgct tgccattttt
     3421 agcacatatt ttgggaagag atatgaatca aggagaattt gtttttgaag gagataataa
     3481 tagaatttat tgttttgtgc aaaaatattg gactagaaat ataaattctt cttattattt
     3541 tggtgatgaa aattatttaa ttagagctgt tttaaactca aatcatctca aaattcaagc
     3601 aagtatgaac aataatacta tctttataag ctatcacagc atgcaagata tgggcgctcc
     3661 agtgcaaaat aaaatagaac tttataagtg ttatcaggaa ttaggatatg atgcgacttt
     3721 gtatttggta aaagatgaaa atgatataga tggtagattt ataaaaagtc tagagcacgg
     3781 tcttagaatg actgataaag ctttatttag aaaagaactt cctttgatgc ttgaaaaact
     3841 acaaggaaga aaatttgata tgagtaaaaa ttctatcact tatccttgca aagacaagca
     3901 atttattttt aaagataaag atgataaatt tgagcttgaa attgtttaag attatcgtta
     3961 gtaaagttaa gaaaggattg ctagggaggg gctttgtaga tggatatttc cttgcctaat
     4021 ataaaaatta aatttatgat ttttttaaaa aaagtgaaat atttttgtat aatgatttgt
     4081 ttaagtggtt aatttctctt ggtgaaaaag gtgctaccaa taatagaaaa agactttaaa
     4141 ataattttct gttgaagatg gcaaatgagt tgcttgagtt gataaataac tctaattttt
     4201 ccaccgcatt gttttagcct atgcttaaat aaaatctacg cttgaaacat agtatatttt
     4261 ttcaagtatt aaaatcaata atttcgataa agtttttaat tttgctaaaa tcaattttca
     4321 aactcatggc attaaaggta attcctgtgc caaaactagc cataaaaact tgttttatgc
     4381 cccccccctt cctccattca tagtttgcca aatcaaaggc taatttattt atcgtaacat
     4441 cgccataatt ttttaaagtt tcatcatttt taatttcttt gaaatttaag agttctaata
     4501 atttagtttt tataaaatta tttgcacttc caaagaaaaa ttcgcctatt ttgcttttat
     4561 caagtttaaa attatcaaaa aaatcatcaa aaaatcgagg aaaattttca tttaagtgag
     4621 aaaatgtgag atttttgtcc atatcgataa aatcatttgc ttctttaaag cattttagag
     4681 gaaaagtttc ttctgtggct aatttggaaa agattttttg cgagaaaaaa gctttttctt
     4741 ttgtattaga tttttcaagc aaaataacac tagcactgtc gctattacta aggtaggtga
     4801 ttttatcttt tttgggtatt tttttacttt ttacacttac gcaaatgaaa gctatttttt
     4861 tgatattttc attatctagt aaagaaaaag cttgcattag gccttgtaaa aatcctgggc
     4921 aaaaagcaat attatcaaaa cacagagttt tttcacttaa accaagattt ttatggatta
     4981 aacttgaaag tgcaggggct agaaaatctg gtgaaaaact ataaactaaa agtacatcaa
     5041 gctcatcttt taaaagcaaa ttttctctaa aaagcttttc tagtgctttg cttgctaaat
     5101 cacttgcata gatattatta gggcttatga aatgatgatt tataccggta ttttgcttta
     5161 aaagttcgta ttttttctgg tttaaattgc attcttgtaa ttctttttct aaggtatgtg
     5221 gatttttggg taaaactata ctaatagcct taatattgtg tgagtttaat tttaaattca
     5281 tttttacttc tttctagtat ttaatagata aattgtaact tatgaatgct taaaatttaa
     5341 gcacaaacgg agtataattt tttgtaaaga aaggatataa aatgacagca tatttacata
     5401 taggaactac taatacagga aatcaagaaa aacaaggctt cttgatgcaa aacgaagaaa
     5461 ggcttttaaa aaaaaggcta tatttatcca aaaagcctta gagtggcaaa taggcattgg
     5521 gctttggtag atatggtttt agaactagtt caaaaagaag atattttgca aaaagagagt
     5581 attttaagtc atatcacaaa tgaaagactt cttagagcta tagaaaattt taaaagcgaa
     5641 agtgctttac ataaagataa aaatttattt tttcagctga gggtatagtt tgggattttt
     5701 ctaccaaaaa acatgtagaa attttagaaa agattatgag agagttaggt tttactcaaa
     5761 tttatattat tgtgtatttt agagatactt tgggttattt aaactcacat tgttctcaag
     5821 atcataaaaa caatatgggg tattattctg ctgattttgc tccgcaagat catcctagaa
     5881 aatatatttt tgactatgaa tggatttgca aaactcatgc tgaggtattt ggagaagaaa
     5941 atttgatagt aagacttcta agggaggatt atgtaggagg gactttactt aaggattttg
     6001 tttatcattt aggacttgaa tgggatgaga gttttgtttt aaaacaaacc aaaaatgaaa
     6061 gttttaatct tttaggaatg gagcttatgt caagattaaa tcaaaaagat ttaaagcagg
     6121 ataatcttaa ttctttgctt tttatggcaa gaagaaaatt tgaaggcagc aaagaaaaaa
     6181 gattaaaatt tgcagtgcaa aaagatattg ctaaagctta tgtggattat tttgcttctt
     6241 cacttgaatg ggtaaaaaac aaatatttcc cgcataaaaa ttctcttttt actcctgtga
     6301 attgggaaga atatgaacaa aattatactt taacccatat gctaagtaaa gattgggatg
     6361 atgtggcgga ttttatagca caaattattg tttctaaaaa tgaaatcatc agttctttaa
     6421 aagaacagct tgaacttgca aggaaagatt agtctttcat tgcaagttca agcatttttt
     6481 tgatattttc aaagctttca aaattttcag gtgtgataaa ttctgctttt aagggttttt
     6541 tataaaattt ttctatttcg gcaaccaaag ccatgatatc gatactatcg ataaaatctt
     6601 cacttactag attttccata ctctcattga tatctgttct ttctatattg ataaaaaatt
     6661 gtttgatttc ttgcatttta ttcctttgtg atttttaaaa tgacattatc gcttaaattt
     6721 aaaattaaat caagctcatt gatttcataa aataaaattt ctctttcttc acctaatatt
     6781 tctaatctag ctttaggaac tccgcttaag gcaccgcagt ccatagctct taaaaagcga
     6841 gaaatttttt ctttattcca agtaagatct aaataaccat tatttggtaa agataatttt
     6901 ttgtgatacc ccccccctga aatttgcatt ttaaaagctt tattttttaa aatttctaaa
     6961 gcttctctaa ataaagttag agcaagtttg tgttgagcgt ttaaaagact taaagcagta
     7021 caattattat caagttttat ttctttttga actaaaatat cacctgtatc tatactttct
     7081 ttaaccatat gccaagtaat acctgttttt ttatcgtttt cccatatact ccaaatatgt
     7141 gcattacatc ctctgtgaaa aggtaataat gcgttgtggt aattaataat agtatttttt
     7201 tgaatacatt cttttttgaa aatataaaaa ttattagcac taataataag gcaattttta
     7261 agatttttaa agaaatcatc taaattttct atatttttta caaaatttac ttcttgtctg
     7321 aaaaaatcat tagctat
//
LOCUS       DARGEX010000073         7159 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.073, whole genome shotgun sequence.
ACCESSION   DARGEX010000073 DARGEX010000000
VERSION     DARGEX010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7159
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.073"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..424)
                     /locus_tag="SF010_001321"
     CDS             complement(<1..424)
                     /locus_tag="SF010_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEG8230241.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKNFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIG"
     gene            complement(418..1080)
                     /locus_tag="SF010_001322"
     CDS             complement(418..1080)
                     /locus_tag="SF010_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8230242.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(1067..2650)
                     /locus_tag="SF010_001323"
     CDS             complement(1067..2650)
                     /locus_tag="SF010_001323"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG8230243.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQILSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(2647..3135)
                     /locus_tag="SF010_001324"
     CDS             complement(2647..3135)
                     /locus_tag="SF010_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230244.1"
                     /translation="MKKYITMSILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(3135..4805)
                     /locus_tag="SF010_001325"
     CDS             complement(3135..4805)
                     /locus_tag="SF010_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG8230245.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEAATEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSAKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(4937..5770)
                     /locus_tag="SF010_001326"
     CDS             complement(4937..5770)
                     /locus_tag="SF010_001326"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG8230246.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQSLSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKNFKI
                     N"
     gene            complement(5760..7046)
                     /gene="aroA"
                     /locus_tag="SF010_001327"
     CDS             complement(5760..7046)
                     /gene="aroA"
                     /locus_tag="SF010_001327"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG8230247.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENILKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
BASE COUNT         2313 a         1279 c          852 g         2715 t
ORIGIN      
        1 aaccgattgc catttttgtc caaaaaagtt ctaaatctaa aaaacgagga taaacaataa
       61 taatatattt atatcctttg taaataaagc ttttagtgag aatttttttt gaattgaaat
      121 ttaaaatttc tccttcttta agattagaaa aaaaatcagg attttttaca gaacttattt
      181 tcatatcatt gtttaggata ataaaatcag ccctagtatc tttagcaaaa ttcttgatat
      241 tagcatcatt taaatgctct aagagagaaa attttaaaac atcatcaagg cttttgattt
      301 tttgttcata ttgttttata agcaagaaat taagataaga attagtaaaa gtataaaaaa
      361 taaacccaaa aatcaaagcc aatacaacaa aaaaaactat aaaaatattt ttagttttta
      421 gcataattta tagccaatac ccctaacact tataatatga tcttttagtt ttggaaattt
      481 atttctaagt cttgttagag ctatattgat tgttttatca cttgtagtat catctttcca
      541 aacactttcg cttaaaaatt gtctagtaag caaggtattt ggattttcaa aaaaacattt
      601 taaaagctca tagtcaagat ttgagatttc taatttttga tttttgtaaa agaattcata
      661 actaaccaaa tctaaaataa aatcaccaaa agatagtttt tcttcttctt ttttatggcg
      721 ttttaaaatt gctttaatac gaagcaaaag ctcattgaaa tcaaaaggtt tacaaacata
      781 atcatcacaa ccactttcaa agccttcgag taaatcttga tgtaaagcct tggctgtaag
      841 aaaaataact gcttctttat atccttgctc tcttaaatct tgaatttttt ctaaagaatc
      901 tccactgggc aaatttctat cgactattaa aagatcaatt tgctcattat cgagcaaatc
      961 ttcaactcca aaaaaatccg ctaaagatat aacttcataa ccgctagatt ttaactttaa
     1021 aacaagcagt tcgtttaaat ctatatcatc ttctataatt aaaattttaa atttcaacat
     1081 attggacaaa tacacacgcc tctaattgtt ttagttcatc taatacttct ttttgaactt
     1141 tttcatcaat caaaacaaca gccaaagcat acccaaaacc atctctacca agcctaaaat
     1201 cagctatatt gatattttta gctgccaaaa cggaactgat tttagctata actcctggta
     1261 tgtctttgtt tttaaaaata atcatttttc cctttggctt aaaatcagtt ttaaagccat
     1321 ttaatccaac tatgcgttgt tcattttcat taaacactgt tcctgaaaca ctgatatttg
     1381 aattttcggt gataatttta acgctaagtt tattattata accactattt ggaagagttt
     1441 cgcaagataa ttcaactcct ttttctttgg caacaaattc tgcattaaca taattaattt
     1501 tctctcctaa aattccaccc aaagcaccaa cagctgcaaa agttagcata gaatttgcat
     1561 actcaccaat aattccttca gcctctaatt taatactttt tataggattt ttatcaattt
     1621 gaacagctaa aaaagccatt ttagaaacaa gttctatata aggagctaca aaaggtggta
     1681 aatcttcagt tttaattggt aaatttaagg cattaggata agccacgcct cgtgctgcgc
     1741 ttaatgcttg ctcacaagct tctcttgcga tattgtcttg actttctaaa gtatttgctc
     1801 ctaggtgaga agtaactgaa atattttcaa agtctaaaag aggatgatta gtcgcgggtt
     1861 ctttatcgaa cacatctata ccaagccaag ctattttacc actttttaaa ccttcatata
     1921 aagcctcttc tgtgtataat cctccgcgag cacaatttat taatcttatt ccatctttca
     1981 tttttgcaat ttcttgcttt cctatcatac cattggtttc tttggttttt ggtgtgtgaa
     2041 tggtaataaa atcacttttt tctaaaattt catccaaatt ttttgcttgt tccatatcta
     2101 aatctgtaat cttagaagca gaaatatacg gatcataggc taaaattttc ataccaaatg
     2161 ctttagcacg gatagctact cttgaaccta tatttccaaa acctataacc cctagcgttt
     2221 tattcatcaa ttcaatgcca taccattttt ctctttccca ttttctttca atttttaaaa
     2281 aattatgagc attgacaaag cttctagctg atgttaaaag atgtgccatt gttagttcaa
     2341 ctgcggcaat agtatttgca gttgggacat tcatcacaat cactcctcgt ttagaacact
     2401 ctggaatatc aacattatct acgcccaccc cagcacgcac aagcgctttt aattttttgg
     2461 catgatttaa aaaatttaca tctacatccg tagaacttct agtaattgca acttcaatat
     2521 cgcttagtat ttgcataagt tcatcttttg gaaattttgc agcttctata agctcaatat
     2581 cttcagcttt tcttagaata tcgacacctt tatccaaaat agcatcacac actataatct
     2641 tttttttcat aaccaaattt cctttacttc tgtatttatt ttatattttt ttaattcttt
     2701 gataatatca tctataagtt tttcattgcc tgtatccaaa aagatttctg gactatcgcc
     2761 agatttaaga agaaaatact tcacattaaa agaatttaaa gtctgtctta agcaaaacat
     2821 agaataaata tcatattttc caactataag ttgataatat ttatttttct ccttaagctc
     2881 gctagtatcc gcatcaaaat ataaggtaaa tttttctgct gctggggtaa aatctcttgt
     2941 aggccatttt gctaattctt cttgccatga aagatcttga ttttgggttt gaatgcttgg
     3001 ctgcgtattt gtatctttag caaattgtgg aatgaaattt acattagctt taaattgcca
     3061 aagcaatgta aaaacaacag caagcaaaat gagtaataaa atactcaaaa tgctcattgt
     3121 aatgtatttt ttcattaagc tagctgatct ttaatgatat cacctaaagt tactttatca
     3181 tcattattga tttcattaag aacttctctt tcttttattc taacaagatt tttaacactt
     3241 aggcgaattc tatttttctt ttcatcaata aaaactatag cagcttcaat atcgtcgcca
     3301 atttttaaat tttcaagcat agaagtgctt atatcttctt tatgaattaa agcatcaaca
     3361 tttttactta gctctacaaa aacaccaaaa tctttaatat cacggatagt gccttttaca
     3421 atatcgccga ctttatgaat tttggcatat tcttgcactg gagaactgtt taattctttt
     3481 gcgcttaatg atattttttg gttttcttca tctattttga taatttttac cttgatttta
     3541 tccccttgag agaatttgtc tttacattta tcgtttctat cccaagaagc atcttcatta
     3601 tgcaatagac cttcaatacc gccaagttta acaaacgcac caaaagaagt taccgaggtg
     3661 atctcccctt caaccacatc tgcaattttg taagatttca taaattcatc aaaaggtcta
     3721 gaaagtaaat ttcttaaaga aactcttaag cgtctttcat ttggattgat ttcaattact
     3781 tcaacatcaa tttcttgacc tttgttgata taatcttttg gatttttaat atttttatcc
     3841 caagaaattt cactgatatg taaaaatcct tctatatcat ttcctaaatc cacaaaagca
     3901 ccataaggct ctatatttga tactattact ttaatggtat cacctacatc aagagtatct
     3961 tttatctcgc tccatggatc gggtaaagcc gcttttatag acaaggataa atgtttgcgt
     4021 tctttatcat actttataac tttaactgga accttatcac cctctttata aagtgttcca
     4081 ggatttacag gtcctttgta agaaatttcg ctgtaatgaa caagaccatc aacacctcct
     4141 acatccacaa acataccata agtagtaatt tttttcacaa taccttcaat taaatcttct
     4201 tgttgtgcta cattattgat caattctttg cgttttcttc tctcgtcatc taaagttttt
     4261 ttacgagaaa caatgatact ttgctcatct ttgtcgattt taataatttt aactttaaac
     4321 gttttgccta taatattatt tgtttctttg aagccatatt gagattttgg taagaaaaat
     4381 tcaacatcat tttcatcaac aactatcaat ccgcctttat tttttccaac tacttttacg
     4441 gtaaaaatat catcttgatt ttcttgatag tttttaataa attcgataac tttttctttt
     4501 ctcaaagctt ttttatgaga aagtaaagat ctgccaccac gagaacccat aacagcaact
     4561 ttaataccat cgcctacatt aaataatagc ttagaattgt catcttgtat ttcgctaaga
     4621 gctaaaatac cttcagattt tttacctata tctacataaa cttcatcatt tttgatctct
     4681 acaatcacac cctctgttgc agcctcttct cttgatttat caaaagcttc taaaagctgt
     4741 ccaaaatctt cttcctcaag ataatcatct acgccgcctt gaactttttt gttcacctcg
     4801 ctcattatga tcctttaaaa taatttttag aaattgattg attttacctt atttttcttt
     4861 aattagtgtt aagttttttt atttttgtta atttttttta aatttttgac ttttttattc
     4921 tatttgaaaa cattttttaa ttaattttaa aattttttat tttggcgata actttttgta
     4981 tgatccaatc aggagtacta gcacctgcac taatgccgca atgtttttta tccaaaaacc
     5041 attctttttt taactcttct tcggtttcaa ttagatagct atcttcacaa ttggtttttg
     5101 caattaaaaa aagttgtttt gtattggctg agtttttacc ccctacaaca accataacat
     5161 cacttttaag cgagagttct ttaatggcat cttgattttt aaaggttgca tcacatatag
     5221 tgttaaaaac tcttacttct ttggttttaa gtattaaaaa atttactatc tccataaaat
     5281 gctcaggctt cttagttgtt tggcttacca cagctatttt attaggaagt tttatatttt
     5341 gaagttcttt tttatccaaa actacataag cttttgtact tacataactt ttgactcctt
     5401 taacttcggg atgattttca tctccaaaaa taacaacttc ataaccctcc ttactcattt
     5461 gctcgcaaat ttgttgtggt tttgtaacaa aaggacaagt ggcatcaaaa atttctatat
     5521 ctttttttct caattcttct aaatcttgct ttgtaatacc atgagttctt ataatagcct
     5581 ttttttcatt acttaaagat tgtatatttt ccaaagtttt gacattaaaa tttttttgca
     5641 aacgagaaat ttcttcgtta ttgtgaataa gagggcctat agttgcggca tcttttattt
     5701 gttctgcttt tttaatagct cttttaacac caaaacaaaa accatagttt tttgctaatt
     5761 caataatcaa tcctagctcc taaatttgat aaaatctcta taaaatttgg aaaagaagtt
     5821 tttatacaat cactatcatc aatctcgatt ccgcaaagca aacctaaaat agcaaaactc
     5881 atagcaatac ggtgatctcc atagctttta atttttgaag attttagttc gcatccacct
     5941 tctatttcaa aaccatcatc aagttctcta gcttcaacac cacaaagctt tagattttca
     6001 accatcacag caatcctatc gctttcttta acgcgtaatt ctttagcatt tattaaacta
     6061 gatttaccct tagccaaagc aaaagctata gccaaagcag gcgcttcgtc tattaaccaa
     6121 gcgatattat ctttaacttc tatgccatta agcttgctag actccaccct gatctcacca
     6181 atagtttcaa aatcattttg agttattgtc atttcaagct tggcacccat tttttgcaaa
     6241 attttatacg cctctatacg agtaggatta agcaaaatat tttttaaaat aatttgagat
     6301 ttaggcaaaa taatagctgc taaaacaaaa taaaaagccg aagaaggatc attaggaatg
     6361 attatatttt gagcttttaa aggttttttt aaaggattta tttcaagact taagccatca
     6421 ttactaaccc ttattggagc tttcatagcc tttagtatgt tttcactatg atttcgacta
     6481 agagaaattt cactaaaagt gcatacatta tcagctctaa aagcagataa aatcatagct
     6541 gttttaactt gagccgaaga aatttcgctt ttaaaattaa aagcttttaa tttttgacct
     6601 tctatacaaa gtggagctaa atttgcctca tttcttccat aaattctagc gcctatttga
     6661 gtaagtggtt tgcttatcct tctcatagga cgattgttta aatacttatc tccacttaaa
     6721 acaaaaaaac cagaaattcc tgctaaaaat cctatcatca aacgcatagc agttcctgaa
     6781 tttccacagt ctaaaataca atttggagat aaaatttctt tagggggtat aattttgacg
     6841 caagaatctt tttgttcaat tttagctcca agatttttta taatttcaag agtgtttaaa
     6901 gtatcttgag ctaagagata attttgagcc ttattttctt cttgtgttaa aagcgaaaat
     6961 atagcaaaac gatgagatat gcttttatct gctgctatat tttcaagtat agcatttaca
     7021 ggggtttgca atttgtaaat tttcatctta aatcaagacc caaattttta agagtattta
     7081 aaattttatc catacattca ttcacttgat tatcttctag agttttattt atatccctaa
     7141 aagaaaaact tatagtaat
//
LOCUS       DARGEX010000074         7145 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.074, whole genome shotgun sequence.
ACCESSION   DARGEX010000074 DARGEX010000000
VERSION     DARGEX010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7145
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.074"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            21..305
                     /locus_tag="SF010_001328"
     CDS             21..305
                     /locus_tag="SF010_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8230248.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            418..831
                     /gene="ndk"
                     /locus_tag="SF010_001329"
     CDS             418..831
                     /gene="ndk"
                     /locus_tag="SF010_001329"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG8230249.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            832..1185
                     /locus_tag="SF010_001330"
     CDS             832..1185
                     /locus_tag="SF010_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230250.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINSKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            1209..1355
                     /gene="rpmF"
                     /locus_tag="SF010_001331"
     CDS             1209..1355
                     /gene="rpmF"
                     /locus_tag="SF010_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG8230251.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1361..2347
                     /gene="plsX"
                     /locus_tag="SF010_001332"
     CDS             1361..2347
                     /gene="plsX"
                     /locus_tag="SF010_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG8230252.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIINKTLLLDVGANTDCKAENLFQFAIMGEVY
                     ARAIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            2340..3314
                     /locus_tag="SF010_001333"
     CDS             2340..3314
                     /locus_tag="SF010_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG8230253.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERTNLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILTKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3311..3661)
                     /locus_tag="SF010_001334"
     CDS             complement(3311..3661)
                     /locus_tag="SF010_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8230254.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQILLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3658..4734)
                     /gene="serC"
                     /locus_tag="SF010_001335"
     CDS             complement(3658..4734)
                     /gene="serC"
                     /locus_tag="SF010_001335"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG8230255.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4744..5907)
                     /locus_tag="SF010_001336"
     CDS             complement(4744..5907)
                     /locus_tag="SF010_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG8230256.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5904..6611)
                     /gene="ubiE"
                     /locus_tag="SF010_001337"
     CDS             complement(5904..6611)
                     /gene="ubiE"
                     /locus_tag="SF010_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG8230257.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            complement(6614..>7145)
                     /locus_tag="SF010_001338"
     CDS             complement(6614..>7145)
                     /locus_tag="SF010_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230258.1"
                     /translation="YSRSLYIVLSSMNTILDKNLSNILALKFKDITKKTQDILASENS
                     NQDLLLFLSDEKIQDLFNDFDFFIKENSFYEGDCKDRFFKQLVALELRKKIILFRKNI
                     LKNFDLELFENSFFELAIFLEYFYRFLEIKNLNKLYEKYCKDRDKNIFSKIINNKNKF
                     CKLLKKSSKNLKIYKG"
BASE COUNT         2508 a         1143 c         1024 g         2470 t
ORIGIN      
        1 aatattaaaa aggagaaaaa atggctgtaa aaattacaga tatatgcatt gcttgtggtt
       61 cttgtattga tgagtgtcca gtgagtgcta tcgttgatga tgttaacaat ccagaaggcg
      121 aagatagata ttatgtttat gcaaacaaat gcgttgaatg cgtaggacat aatgatcaac
      181 cagcttgtgc tagtgcttgc ccaacagatg gatgtatagt ttggagtgct gtagaatcag
      241 gacaaccaag tcgtgataat attggcgctg atatgagaag tggggacact ccagtttttg
      301 cataatttta aaaaattaaa aagctagaga ttcctagctt tttcttttaa tttaactttc
      361 tttaaacaaa ttcaagtata attttaagct ttattaaaat aaggagttat tacaaagatg
      421 gaaaaaactt tatctataat taaacctgat gctgttaaaa aaggtgttat aggaaaaatt
      481 ttagatcgtt ttgaaagcaa tggattaaga atcgctgcaa tgaaaaaagt tcaacttagt
      541 aaagaacaag ctgaaaattt ttatgctgtt cataaagaaa gacctttttt taaagacttg
      601 gttgaattta tgattagcgg tcctgttgtt gtttctgtac tagaaggaga aggtgctgta
      661 ttaaaaaata gagatttaat gggagcgaca aatcctaaag aagctaaagc aggaacaatt
      721 agagccgatt ttgctgagag tattgatgct aatgctgttc atggaagtga cagcttggaa
      781 aatgcaaaaa tagaaattga ttttttcttt aaaccaaatg aaatttgcta aatgaaaatc
      841 cctttttcta agattaatac aaaggaatat ccttttaaac ttaatcttga aaatatgatt
      901 tttgagggaa atttagtaaa aataaattct aagcttgtta aaataaatgc tattatgcaa
      961 ggttttatct atagaccttg tgatagttgt ggaactgagt tagaacttga aattaaagaa
     1021 aatttagaac tttttgcaag tgatggtatt tttaaagatg aagcaaacga attgagcaat
     1081 actatagaat ttttcgatgg acatattgat ttaatagaag ttgctatcag cgagcttgaa
     1141 gcttatttaa gtgattattt ttattgcata aattgcaata attaattaaa ttttataaag
     1201 gagaaaaaat ggcagtacca aagagaagag tgagcaaaac tcgtgcagct aaacgcagaa
     1261 ctcactataa agttagtctt cctatgccta taaaagacaa agatggaagc tacaaaatgc
     1321 ctcaccgtgc gaatccaaca actaaggaat attaaaatca atgattaaca ttgccattga
     1381 tgcaatgggt ggtgattttg gagaaaaacc cattatagaa ggcgttttaa aggcgctaga
     1441 agcaaaacct tttaacgcta tcttagtggg aaattctaaa attctaaaac ctttaatacc
     1501 aaaaaaatta gaacaatata tacaatacga agaagctagt gaaatttttt cgatgaatga
     1561 aaatgccaca gatgctttaa aaaataaaga aacaaccata tataaagcta ttaatttatt
     1621 aaaagaaaaa aaagtagatg ctgtagtttc agcgggtcat agtggagcaa gtatgtcttt
     1681 ggctacctta aggcttggaa gacttaaagg catttcaaga cctgctattg ccactttaat
     1741 gccaaatatc attaacaaaa ctttactttt ggatgttgga gctaatacag attgtaaagc
     1801 tgaaaattta tttcaatttg ccataatggg tgaagtttat gctagagcaa tcatgcaaat
     1861 tcaaaaacca cgccttgctt tactttctaa tggtgaagaa gaatgcaaag gtaatgaact
     1921 taccaaagaa agtcatcagc ttatgaaaaa aattccaaat tttataggta atgctgaagg
     1981 tagagatatt ttcaatggtg aaatagatgt tttagtctgt gatggttttg atggaaatgt
     2041 tatcttaaag gcttgtgaag gtgtggcaac agctattttt caacttctaa aaaacgaagt
     2101 aaagcaatct tttatttcta aaataggtgc tttactcatg aagccatctt ttaaaaaatt
     2161 aaaaaaacac acagattggc aagaatatgg cggagcaccc cttcttggag ttaatggctg
     2221 cgtgatcata agtcatggaa aaagcgattc tagagctatt aaaaatgcaa tttttcaagc
     2281 tataaatttt agccaatctc atatcaatga acttatagaa aatgaacttg ggaaatacaa
     2341 tgcttaaagc cagtcttaaa agtatagctt cttatattcc agaaaaaatt ttaagcaatg
     2401 ctgatcttga aaaaatggta gataccaccg atgaatggat cactagacgc acaggtatta
     2461 aagaaaggcg cattgctagt gaaaatgaaa atactagcga tttgggcaca aaagctgcat
     2521 taaaagccat agaaagaaca aatttaaaac ctgaagatat tgatgctatt cttgtagcca
     2581 ctttaagtcc tgattatttt actatgcctt caaccgcttg taaaattgct tcaaatttag
     2641 gacttgtaaa tattagcgct tttgatattt cagcagcttg ttctggtttt atctatttgc
     2701 ttgaacaagc taaagcctta gtagaaagtg gtttgaaaaa aaatgtttta atcataggag
     2761 ctgaaaaaac aagttcaatt atggattaca atgacagaag tatttgcata ctctttggag
     2821 acggtgcagg tgctggagtt gtaagtttgg ataatgaaaa tcatatcctt gatgtacata
     2881 ctgcaagcaa tggtaattat ggagatcttt taatgactca aagatcgcaa aaatcaagcc
     2941 tatgtcaaac actttctatg caaatgaaag gcaatgaagt ttttaaaata gcagtaaaca
     3001 cgcttagtaa tgatgttgta gaaattttaa ccaaaaataa cattttagca caagaaattg
     3061 atctttttat tcctcatcaa gctaatctac gcatcattaa agccgtccaa gaaaaactca
     3121 atctaagcga tgaaaaatgt gtgatcactg tacaaaaata tggcaatact tcagctgctt
     3181 ctatacctat ggcaatgaat gatgcctatg aagaaggacg acttaaaaaa ggaaatctga
     3241 tcttactaga tgcttttggc ggtggtttta cttggggatc tgcgctttta aaatttggag
     3301 gagagaattt ttaattctct cttagctttc caaaagcttg aatttctacc aaataaccct
     3361 ctgctaaagc acttcctaca caagctctaa caggtttagg ataattttta atccaagcat
     3421 cataaatttc attcattgca tcaaaatctt gcatattagc taacaagatt tgaatttgaa
     3481 tcaaatctcc tttgcttgcg cctatttttt caaacaaagc atcaagttct gcaagtgctt
     3541 ctttggtttg ttttttaata tctccgctag gttcaaaagc cacttgtcct gcagtcttaa
     3601 aatatttatc aaaaacaata atttgcgaca ttctatcgca ctcatcaaaa cgctttatca
     3661 tgcatatttt ccttgaaatt ctttcataaa ttcacacaag gtttttacct gatccaaatt
     3721 aagcgcatta taaatacttg cacgaattcc tcctaaaatt ctatgtcctt taagtcctat
     3781 cattccagct tcttcggctt cctttacaaa aagaggctct aaatctttat ttttagcaat
     3841 attaaaactc acattcatta aagatctgtc ctttttatct gcatgtcctt tataaaatcc
     3901 attacttaaa tcaatacact cataaagcat agcagctttt tgagaatttt tctcatgtac
     3961 tttatcaagt ccgccttgat ttaaaagcca atccatttca agattaaaca tataaatggc
     4021 aaaggttgga ggcgtattaa acaaggactg attctcagca tgagtcaaat aatttaacat
     4081 actaggaatt tgtttatttt tagatctttc taacatatct ttacggataa aaatacaact
     4141 taaacccgaa attccagcat ttttttgcac tccgccataa aaaagagcaa tatttgaaaa
     4201 atctactttt ctagaaaaaa aatcactcga tgcatccaca atcaaaggag ttttagtttt
     4261 aggataattt tgatattgag tgccgtaaat agtattgtta gaacaaatat aagcataatc
     4321 agcattatct ctaaattcca ctctaggaat atgattaaaa ttactttcct cgctacttgc
     4381 tacggtttta acattgacac ctaaaatttg tgcttcttta attgcttttt ttgtccaaac
     4441 tcctgtattt gcatattcac aaatcccatt taaagccaaa ttcataggaa tcatagcaaa
     4501 ttgtaaactt gctccacctt gtaaaaataa tacttcataa tcatcattta acccgtaaag
     4561 ttttttagct ttctcttgtg ctccaaaatg cacttcttca aatacttttg tgcggtgaga
     4621 aatttccatt atagaataac ccctaccctg ataatcacag agttcttttt gagcttgctc
     4681 taaaatttct aaaggtaaag tcgatggccc tgcactgaaa ttgatttttc tcataatcta
     4741 tccttataaa atttttgctt ctttttgaga agtttgagaa cttaaaataa cgatatcatc
     4801 actcttaaga tcttctaaat ttgctatttt accatttttt ctgatacaaa taaacttttt
     4861 gcttttatta aaaaaattct catgttgcaa ataagcattt tgcaatttat ctaattttaa
     4921 ttcattataa cgcatttgat ttgccaatag atgatttaat tgcttttcta tattatggct
     4981 ttgttttatt ttttcatcta ttatttttgg caaagaatta aatttgaaaa atttgcttaa
     5041 atttaaaagc aaattttcat aattttgtat tttataattc caaagttgca ttaatttttc
     5101 ttccattaaa tccaaacttt gctctatatc caacttagaa taaaacaaag tatctatagc
     5161 agctgaaggc gttggagctc taaaatctgc aacaaaatca ctaataacat aatcaatctc
     5221 atgtcctatg gctgaaataa taggagtttt tgctttaaaa atctctcttg ctaaattttc
     5281 atcattaaaa caaaaaagat cttctctgct tcctccacca cgtgctataa taagaacatc
     5341 taaatccata tcatcggctt tttttaaagc ttgtataaga gaaaaaggag cattatttcc
     5401 ttgagttaaa gcatcaaaaa tataaatttt tgccaaaaaa tattcttttt ggtgaataag
     5461 ttttaacata tcttgcaaag cagcagaagt ttttgaagtg ataatgccta cttttttagg
     5521 aaattttggc aaagattttt taaagcgtgg atcaaaaagt ccttcttttt gcaaacgctc
     5581 ttttaaagcc aaaaactgtg cttccaaatc cccaaaacct gcttttttca tactagtagc
     5641 gataaattga taacgaccac tttcaggata taaacttaca cttccacaaa gctctaaaaa
     5701 attccccaca gctggtttaa atccgacttt taaattagct cctttaaaca tagcacaagc
     5761 aatgcttgat ctttcatctt ttaaatcaaa ataccaatgt cctgaaccat gcaaagtaat
     5821 ttttgaaatt tctccactta aaactatatc atcaaaatgt gtttctaata aagcctttgc
     5881 tttaagattt aattctgttg gtgtcatagt ttttttgcta taaacattga actcacgcca
     5941 aagctaaaac ttttataatc aagtatttca aaaccagcat ttttaagttc taagatgaac
     6001 tcttccttac ttaaaaatcc ttcaatagag tttggcaaat actcataagc acttttattt
     6061 ttactgatta tcccacctat acttggtaaa atatttttaa gataaaaatc tctacaagct
     6121 gctataaatc cacccttttc tctttttgta aattccaaaa ctaccaaaat accatctttt
     6181 tgaagtactc tagcaaattc acttaaggct ttttgtcttt ctacaacatt gcgaatgcca
     6241 taactaatgc ttaaaatatc taaactttga ctttctaaag gtaaattttg cgcccctgct
     6301 tctataaatt cgacatttgg aaatttttct tttgcaacat ttagcatgcc actacttgga
     6361 tcaatacctt taatatttag aatatttttt tccattttta aagcactctc ttgccaaatc
     6421 tctatcatat cccctgtgcc acaggcaata tcagcgattt ttaaatcttt ttttaaatac
     6481 aaactcatca ctctttgaca agctttttta cgccacgcta catcagctcc aaagcttaaa
     6541 attctattcg ccttatcata agtaggtgca atttgattaa acatttctat aattttttct
     6601 tgtttttgca tttttatcct ttgtaaattt tcaaattttt acttgatttt ttaagcaatt
     6661 tgcaaaattt atttttatta ttgattattt tcgaaaaaat atttttatcc ctatctttgc
     6721 aatatttttc ataaagtttg tttaaatttt ttatctctaa aaaacgataa aaatattcta
     6781 aaaatattgc caattcaaaa aaactatttt caaaaagctc taaatcaaaa ttttttagta
     6841 tattttttct aaataaaata attttttttc taagttctaa cgcaacaagt tgtttaaaaa
     6901 acctatcttt gcaatcgcct tcataaaaag aattttcctt tatgaaaaaa tcaaaatcat
     6961 taaacaaatc ttggattttt tcatcgctta aaaatagcaa taaatcttga tttgaatttt
     7021 cacttgctaa aatatcttga gtttttttcg ttatatcttt aaactttaaa gccaaaatat
     7081 tactcaaatt tttatctaaa atagtattca tacttgataa aactatatac aagcttcttg
     7141 aataa
//
LOCUS       DARGEX010000075         7106 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.075, whole genome shotgun sequence.
ACCESSION   DARGEX010000075 DARGEX010000000
VERSION     DARGEX010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7106
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.075"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..211
                     /locus_tag="SF010_001339"
     CDS             <1..211
                     /locus_tag="SF010_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230259.1"
                     /translation="QEKIKKDPSLKLPSLENYPDYKEALTFKNHLSYKLGQALIKANK
                     TWYKGGYIKMLFEIRELKQKAKKGK"
     gene            211..768
                     /locus_tag="SF010_001340"
     CDS             211..768
                     /locus_tag="SF010_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG8230260.1"
                     /translation="MAIEFDIQESKILKGVFIITPNSFKDLRGEIWSVFSSKDIESLL
                     PSNLKFVLDKFTLSKHNVLRGIHGDHKSWKLVTCVYGEVHQVVVDCRKDSPTYLKWER
                     FIINENNRKLILIPPYFGNAQYVSSKNDALYYYKWAYEGEYVDAKDQFTYAWNDSRIA
                     IDWSTDTPILSDRDIDATINDHIKG"
     gene            773..1867
                     /locus_tag="SF010_001341"
     CDS             773..1867
                     /locus_tag="SF010_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEG8230261.1"
                     /translation="MNKQSKIYVAGHTGLIGSTILKKLQQDGFCNIICKTHQELDLMN
                     QEAVKYFFEKEKPDCVFFCAAKVGGMLAQLNQRAEFLYNNLVMQSNVIHYSYLNGVKK
                     LIYLGSICIYPEEVQLPIKESSLLTGKLQYNNEPYAIAKIAGLKMCEFYSLQYGVDYI
                     SIMPVSIYGSNDNFDIQTAHVQAAIFRKIYLAKLLNECNYKELIDDLGVKTKEEAFMI
                     LKQNNINDKSVKLLGTGNSRREFLHCEDLAEASIYIMKNISFNEVVEREGWNQGNAHI
                     NIGTGEDISIKELAYMIKDILEYRGEVLFENKMENDGTARKVIDTNKIRALGWHYKIE
                     LRDGLVRMYHDYKKGVKQNEKIYTSFINLG"
     gene            1830..2996
                     /locus_tag="SF010_001342"
     CDS             1830..2996
                     /locus_tag="SF010_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEG8230262.1"
                     /translation="MKKYTLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKF
                     TGSKYAVMTSSGSTANLIATAALFYTKNPKLKRGDEVIVPAVSWSTTYYPLYQYGLKL
                     KFVDIDLETLNYDLDALSSAISDKTKMIMVVNLLGNPNDFDTINDLIKGKDIILLEDN
                     CESMGAEYKGKQTGTFGIMGTFSTFFSHHMATMEGGFVVTDDDELYHILLCLRAHGWT
                     RNLPKENLVANKSDDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLLMFLKHRRENA
                     KLFCEYFQNHPEFIMQKEIGSSSWFGFSLVIKPNSKLQRKDIIKKLEENDIEYRPIAT
                     GDFTQNEVIKYFDYEIHQELKNAKYIHEKGFFVGNHQFSISNQINLFKKVLDSL"
     gene            2993..4024
                     /locus_tag="SF010_001343"
     CDS             2993..4024
                     /locus_tag="SF010_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG8230263.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLANTDYEVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHVCSSSEVYGRAKVGIKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIETGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESQKGKVPCGEAFNIAGEEAFKLPEVIEILLS
                     FSTRKDIKIEQDEERLRPIDADYQMFDNTKIKSFINWKPEIAARKMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            4021..5040
                     /gene="hddA"
                     /locus_tag="SF010_001344"
     CDS             4021..5040
                     /gene="hddA"
                     /locus_tag="SF010_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG8230264.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFSEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELETRIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKTLSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            5028..5633
                     /gene="gmhA2"
                     /locus_tag="SF010_001345"
     CDS             5028..5633
                     /gene="gmhA2"
                     /locus_tag="SF010_001345"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8230265.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNTSLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALSTDTSILTAISNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            5621..6313
                     /locus_tag="SF010_001346"
     CDS             5621..6313
                     /locus_tag="SF010_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8230266.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEVYVL
                     NGDTFFDIDLSKLKLNGSKICLALKQMNDFDRYGTVNVDGQGFVISFEEKIFKTQGLI
                     NGGIYLLTKDIFNEFDLEKKFSFEEFLQENYKKLKARAKIFDDYFIDIGIPQDYILFC
                     DKHEFYNLFFHV"
     gene            6805..>7106
                     /locus_tag="SF010_001347"
     CDS             6805..>7106
                     /locus_tag="SF010_001347"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8230267.1"
                     /translation="MGFNKIILILYLRNTSDLLVSLSTQLIKTNYNSIPCFINPWEYD
                     RQYIFNNQWICQRYSEIFGKENLIVRLFDKNEFYQGDLLKDFIHTIGLKWDGRFVIP"
BASE COUNT         2687 a          796 c         1315 g         2308 t
ORIGIN      
        1 tcaagaaaaa attaaaaaag atccttcttt aaaattacct tctttagaaa actatcctga
       61 ttataaggaa gctttaacat ttaaaaatca tctttcttat aagctaggtc aagctcttat
      121 aaaggctaat aaaacttggt ataagggagg gtatattaag atgttatttg aaattcggga
      181 attaaaacag aaagcaaaaa aagggaaata atggcaatag aatttgatat acaagaatca
      241 aaaattttaa aaggtgtttt tataataacg ccaaatagtt ttaaagattt aagaggggaa
      301 atttggtctg ttttttctag caaagatata gaaagtttat taccttcaaa tttaaaattt
      361 gtgctagata aatttacatt atctaagcat aatgtattaa gaggtataca tggggatcat
      421 aagtcttgga aattagtaac ttgtgtatat ggtgaagtgc atcaagtggt agttgattgt
      481 agaaaagact ctcctactta tctaaagtgg gaaagattta tcattaatga aaataataga
      541 aaattgattt taataccacc atattttgga aacgctcaat atgttagttc aaaaaatgat
      601 gctttatatt attataaatg ggcttatgaa ggtgaatacg ttgatgctaa agatcagttc
      661 acgtatgcat ggaatgatag tagaattgct atagattggt caacagatac ccctatatta
      721 tcagatagag atatcgatgc aacaatcaat gatcacataa aaggctaaaa ttatgaataa
      781 gcaatctaaa atatatgttg caggtcacac gggtttaata ggatctacaa ttttaaaaaa
      841 attgcaacaa gatggttttt gtaatattat ttgcaaaact catcaagaat tagatttaat
      901 gaatcaagag gccgtaaaat atttttttga aaaagaaaaa cctgattgtg tctttttttg
      961 cgcggcaaaa gtaggaggaa tgcttgctca gttaaatcaa cgtgcggaat ttttatataa
     1021 taatcttgtt atgcaaagta atgtgattca ttattcttac ttaaatggag tgaaaaaact
     1081 tatatactta gggagcattt gtatttatcc cgaagaagtg caattaccta tcaaggaaag
     1141 tagtttactt actgggaaat tgcaatataa taatgagcca tatgctattg ctaaaatagc
     1201 aggacttaaa atgtgtgaat tttatagttt gcagtacggt gtggattata tttcaattat
     1261 gcccgttagt atttatggct ctaatgataa ttttgatata caaacagcac atgtgcaagc
     1321 tgccattttt agaaaaattt atttagcaaa attgttaaat gaatgtaatt ataaagaatt
     1381 aattgatgat ttgggagtta aaacaaagga ggaagctttt atgattttaa aacaaaataa
     1441 tattaatgat aaatctgtaa aattattggg tactggtaat tcacgaagag aatttttaca
     1501 ttgtgaggat ttggcagaag ctagtattta tattatgaaa aatatatctt ttaatgaagt
     1561 tgtcgaacga gaaggatgga atcagggtaa tgctcatatt aatattggaa caggagagga
     1621 tatatcaatt aaagaattgg cttatatgat taaagatatt cttgagtata gaggagaagt
     1681 gctttttgaa aataagatgg aaaatgatgg aactgccaga aaagttatag atactaataa
     1741 aattagagca ttaggatggc attataagat agaattaaga gatggtttgg tgagaatgta
     1801 tcatgactat aaaaaaggag taaaacaaaa tgaaaaaata tacactagct tcatcaactt
     1861 gggatgaaaa agaattacaa gcgatacaag atgttattaa aagcgatatg tttactatgg
     1921 gtaaaaaagt agctgaattt gaaaaagatt ttgctaaatt tacgggctcg aagtatgcgg
     1981 ttatgacaag ctcagggtca actgcaaatt tgatagcaac agcagccttg ttttatacaa
     2041 aaaatcctaa attaaaaaga ggagacgaag ttatagttcc tgcggtatca tggagtacta
     2101 cttattatcc actttatcag tatggcttga aattaaaatt tgtagatata gatttagaaa
     2161 cactaaatta cgacttagat gctttaagta gtgctattag cgataaaaca aaaatgatta
     2221 tggttgtaaa tttattagga aatcctaatg attttgatac gattaatgat cttatcaaag
     2281 gaaaagatat tattttatta gaagataatt gcgaatcaat gggggcagag tataagggaa
     2341 agcaaactgg aacttttggt attatgggaa ctttttcaac cttcttttct caccatatgg
     2401 ccacaatgga aggtggtttt gttgtcacgg atgatgatga gctgtatcat attttgctat
     2461 gtttaagagc gcatggttgg actagaaatc ttccaaaaga aaatttagta gccaataaaa
     2521 gcgacgattg gtttagtgag tcatttcgtt ttgtgttgcc aggatataat gtgcgtccag
     2581 tggaaatgag tggggctatt ggtatagaac agcttaaaaa attacttatg tttttaaaac
     2641 atcgtagaga aaacgcgaaa ttattctgcg aatactttca aaatcatcct gaatttatta
     2701 tgcaaaaaga aattggaagt agctcatggt ttggattttc attggtaatt aaaccaaatt
     2761 ctaaattaca aagaaaagat attattaaaa aactagaaga aaatgatata gaataccgtc
     2821 ctatagctac tggagatttt acgcaaaatg aggtaattaa gtattttgac tatgaaattc
     2881 atcaggaatt aaaaaatgca aaatatattc atgaaaaagg attttttgta ggtaatcacc
     2941 aatttagtat tagtaatcaa attaatttat ttaaaaaagt attggatagt ttatgaaaaa
     3001 aacagcacta attacaggat ttacagggca agttggttct caaatggcag attttttgct
     3061 tgcaaatacg gattatgaag ttataggaat gatgcgttgg caagagccta tggacaatat
     3121 ctatcattta agtgatagga ttaataaaaa agatagaata agcatttttt atgcagattt
     3181 aaatgattac tctagtcttc aaaaactttt tgagagtcaa agacctgatg tgatttttca
     3241 cctagcagct cagtcttatc caaaaacttc ttttgatata ccgattgaaa ctttacagac
     3301 taatataata ggtacggcaa atatcctaga aaatattaga attttaaagg cgaaagatgg
     3361 ttatgaccct gtagtgcatg tatgttcttc tagtgaagtt tatggtagag caaaggtagg
     3421 tattaagtta aacgaagata caacttttca cggtgcaagt ccttatagta taagcaaaat
     3481 cggcaccgat tatttaggaa gattttatgg cgaagcttat aacattcgca cttttgttac
     3541 aagaatggga acacatagtg gcccaagacg ttctgatgtg ttttttgaaa gcacggttgc
     3601 aaagcaaatt gctttgattg aaacgggtta tcaagagcct gttatcaagg ttggaaatct
     3661 ctcaagcgta agaacctttc aagatgccag agatgctata agggcttatt atctactttc
     3721 attagaaagc caaaaaggaa aagttccttg tggggaagct tttaatatag caggagaaga
     3781 ggcttttaaa ctcccagagg ttatagaaat tcttttatct ttttctacaa gaaaggatat
     3841 aaaaatagag caagatgaag aaagattgcg tcctattgat gcggattatc aaatgtttga
     3901 taacacaaaa atcaaaagtt ttattaactg gaagccagaa attgcagcta gaaaaatgtt
     3961 tgaagatttg ttaaatcatt ggagagatga gataaaaaaa ggaaggattc cgttaaatag
     4021 atgaaaacca tacgcacaca aactcctctt cgccttggtt tagcaggtgg agggactgat
     4081 ataaatttat attgtgataa atacacaggt tatgttttaa atgcgactat atctttatac
     4141 atacattgta ctttgatcga aagagaagat ggaaaaatca tttttgattc gcctgataca
     4201 aattcttact ctgagtacga aagcaaagaa ttcttagaaa atgatggaaa attagatatt
     4261 tttaaaagca tttacaatcg cattgtaaaa gattttacaa aaaaaccttt gagtttttct
     4321 ttgcatactt attcggatgt accaagtggt agtggcttgg gcggaagctc aaccttagtt
     4381 gtaggtgtta taaaagcttt ttcagaatgg cttaatttac ctttagggga atatgaaatc
     4441 gctaagcttg cttatgagat agaaagagaa gatttaggca tagtaggcgg agcacaagat
     4501 caatacgctg caacttttgg cggctttaat tttatggaat tttataacaa taaaagagtc
     4561 attgttaatc ctttgcgtat aaaaaactgg attgcaagtg agcttgaaac tagaattgtg
     4621 ctttatttta caaatatcac aagagaagca aaagatatag aagaacataa aaaaggaaaa
     4681 cttggagatg aaaaatctct cgaagctatg cacgccataa agcaagatgc aataaagatg
     4741 aaagaagctt tgtttaaggc ggattttgat actttggcga aaattttagg aaaatcttgg
     4801 cagtcaaaaa aaatcatttc tgaaattgtt agtaatgatg agcttgaaag aatttataaa
     4861 ctagctatag ataatggagc ttatagtggc aaaaccagtg gagcaggagc aggtgggttt
     4921 atgtttttct ttgtggatcc tactaaaaaa tacaacttaa tcaaaacttt aagcaaagag
     4981 caaggttatg tgcaggattt ttcatttaca aaagaagggg ttaaatcatg gagaatttaa
     5041 attcatatat aaaagaacat tttcaagaat caattttagt aaaagagcaa attttaaaag
     5101 atgagaattt aataactctt attaaaaata cttcattaga agtcataaaa gcttataaaa
     5161 atggtaacaa aactttatta gcaggaaatg gtggcagtgc tgcagatgca cagcatatcg
     5221 caggggaatt tgtaagtaga ttttattttg atagaccagg gatcgcaagt attgcacttt
     5281 caacggacac gagtatatta actgctatca gcaatgatta tggttatgaa aatttgtttg
     5341 caagacaagt gcaagctcaa ggagttaagg gagatgtttt tataggaatt tctacaagtg
     5401 gaaatagtaa aaatatttta aaggctttag agctttgcaa acaaaaagaa atcataagca
     5461 taggcttaag cggagctagt ggcggggcta tgaatgagct ttgtgattat tgtataaaag
     5521 taccttcaac ttgcacgcca agaattcaag aagcacatat tttaatagga catattattt
     5581 gtgctatcgt tgaagaagag ctttttggta aaggtttttc ttgcaagcaa taatactttg
     5641 tggtggctta ggaacaaggc ttaaaagcgt tataaaagac attcctaagc ctatggcacc
     5701 cataaataat aagccttttt tagaatttat ttttgagtat cttaaaaagc aaggcataaa
     5761 agaagttatc ttagcagtat catacaagta tgaggtgata caagaatatt ttaaagatga
     5821 gtttttaggt ataaaaataa aatacagtat agaaaaagaa cctctaggaa caggcggagc
     5881 cataaaagag gctttgaaat ttataaaaaa tgaagtttat gttttaaatg gcgatacttt
     5941 tttcgacata gatttaagta aattaaagct aaatggaagt aaaatttgtc tcgctctaaa
     6001 acaaatgaat gattttgata gatatggcac ggtaaatgtt gatgggcaag gttttgttat
     6061 ttcctttgag gaaaaaatat ttaaaacaca gggtttaatt aatggtggaa tttatctttt
     6121 aactaaagat atttttaatg aatttgattt agagaaaaaa ttttcttttg aagagttttt
     6181 acaagaaaat tataaaaaat taaaagcaag agctaaaatt tttgatgatt attttataga
     6241 tatcggaata ccgcaagatt atattttgtt ttgcgataaa catgaatttt ataatttatt
     6301 ttttcatgtg taaagtgata ttatttatgt tttaagtcat aacataagaa atgactatat
     6361 ctccttttat acatggttta aattgtatat aataaaagaa aattttaata aatatagata
     6421 tgattttata agatttgaaa ttgaaattag gagagtagat tactgcttat gttcatatag
     6481 aaaccccaaa aacaggcaca acaactatac agaaattttt gagtgaaaat aaggaaaaat
     6541 tgaaaattca aaatataatt tatgcaaatt caatagaatc tcatactaga cataatgttc
     6601 ttgttaattt ttgttttgaa tttaaaaata atttgaattg ggaaaatatt agttttgaaa
     6661 catcgttcta gattaaaatt attttatact ttaaaggaag aaattattta aaccaaaaga
     6721 gattttttat tttctacaga aggaattaca tggcattttc atgatattaa atatataaaa
     6781 attttaaaga aattttttaa agaattgggt tttaataaaa ttattttaat tttatatcta
     6841 agaaatacga gcgatctttt agtgtcttta tctactcagt taataaaaac gaattataat
     6901 tctataccat gctttataaa tccttgggaa tatgacagac aatatatttt taataatcaa
     6961 tggatttgcc aaagatattc tgaaattttt gggaaagaaa atttaatagt aagacttttt
     7021 gataaaaatg aattttatca aggtgattta ctgaaagatt ttatacatac tatagggtta
     7081 aagtgggatg gtagatttgt tatacc
//
LOCUS       DARGEX010000076         7042 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.076, whole genome shotgun sequence.
ACCESSION   DARGEX010000076 DARGEX010000000
VERSION     DARGEX010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.076"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(23..973)
                     /locus_tag="SF010_001348"
                     /pseudo
     CDS             complement(23..973)
                     /locus_tag="SF010_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799189.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(1825..2282)
                     /locus_tag="SF010_001349"
                     /pseudo
     CDS             complement(1825..2282)
                     /locus_tag="SF010_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898691.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
     gene            complement(2488..2846)
                     /gene="ssrA"
                     /locus_tag="SF010_001350"
     tmRNA           complement(2488..2846)
                     /gene="ssrA"
                     /locus_tag="SF010_001350"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(2847..3257)
                     /locus_tag="SF010_001351"
     CDS             complement(2847..3257)
                     /locus_tag="SF010_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG8230268.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            3348..4355
                     /gene="ruvB"
                     /locus_tag="SF010_001352"
     CDS             3348..4355
                     /gene="ruvB"
                     /locus_tag="SF010_001352"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG8230269.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSYSALKLNYEKTLFE
                     E"
     gene            4359..5402
                     /locus_tag="SF010_001353"
     CDS             4359..5402
                     /locus_tag="SF010_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG8230270.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(5432..6823)
                     /gene="fumC"
                     /locus_tag="SF010_001354"
     CDS             complement(5432..6823)
                     /gene="fumC"
                     /locus_tag="SF010_001354"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG8230271.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRVKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(6879..>7042)
                     /locus_tag="SF010_001355"
     CDS             complement(6879..>7042)
                     /locus_tag="SF010_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230272.1"
                     /translation="FIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYELH
                     LMSSVGKRF"
BASE COUNT         2283 a         1259 c         1019 g         2481 t
ORIGIN      
        1 gatttagaaa tgatttttaa gattaaattt tatacttaag tcctacttga ccacttaagt
       61 aagtttcatt tttattatct actttacctg ctagtatttg tttagcacca aagccaagat
      121 tcatactgag ttgatttgta aaatctacat taccccctac gataatttgt ccgtatgttt
      181 ttttcttgtt gttagcttct acactagtaa agaaagcatt atttacagct aggttagctg
      241 tgtaatcatc accactattg ataacaaatt gttctatttt tggagttaca aaaatataag
      301 agttttcatt catatatttt ctaaattcag cacccacttc aatacttaca gaattgtttt
      361 tcatagaatc aatatcttta gcaatagcac cattttctgt atgagatgga gtataactga
      421 aataataatt tactcccgca aaaggtttaa taaataaagt attatcacta aagtcaaaca
      481 cacgacctgc attagcacta agtcctaaga atttacttgt ataatctgag ttatatgcac
      541 catctattta aacattgtct tgtttagttg gagaaacttg agcataagct ttaagattaa
      601 gttcccattg tggagctata ttgatagtag aatacatacc taattggaag ttatcgcttt
      661 tttgttctaa attattgtct ttgattttag catttgcata agtaaaataa gcaccccata
      721 aaacatcatc attagcttgt ttatctacac ctatagtagc accatgcatt gcaccactat
      781 ccccatcgat aatgttagca ccaccaaaag cattagccca aacactattg gtatattcat
      841 ttacatagct tggtctcata tcactatcta aagcagcaaa tttaagacca ttcattttag
      901 aagcataagt tccaaaagga ttgtttagca ttgctacacg agaacctata gaaacatcat
      961 tagaaatatt catagtggta tttactgcac tagaagctga attgagatta gatacagatt
     1021 tacctgtatt gtctgtgtct tttttgatat ctaaagctag ttttacacct tctctacttg
     1081 ctaaatctgc tcctatactt cctaattgtt ctgtgataga acgaagtgct aggatagaag
     1141 ctttatcatt agtactaaga tttaaatttg aatttttatt tactaaatca atgtattttt
     1201 catcatcgat tttaccgcca tttttctcag cttcttctaa cattgtttga agttcagttt
     1261 tttgtttttc aagagcttct tttgcttgtt tccattcttc atcttgacta gaatcaaatt
     1321 catttttaag caatttatcg atagtatcta tatctacttg aagttgaact agcttatttt
     1381 tagctgctgc agtagcacct ccattgatta ctaagcattt attgccaccg cagttttgaa
     1441 cgctaagttt ataatctact aaacctccgc tatatttgtc atcagtgata tccagtacag
     1501 ttcctgcttc caaaggatct ttgccttgaa cactggttga gatataatca cttgcgaatt
     1561 ttaaaagtaa tgcacctgcg ttattatttg cttttaaaat atcttcattg aaatctttag
     1621 cttgaactat tactacatta tttgcttcta agtctgtata agagcgcttc ataagtccaa
     1681 aatttgaatt tttaagattt gcagttccat ttaccttaac aaaatttcca taagtagcaa
     1741 aaagcgtttt atcggcagta aaatttccat ttatagttaa gctaccatta gcactttttc
     1801 cttcaactgc tccattataa agaattatac ctgaactttt ttttcatcct cggtaatagc
     1861 ttcacctcct gagctagtca tagttaaatt tccattaatc accgaagatg caaaagcttg
     1921 taaaactata tctgttgttt taacctcttt agcagtagcg tttagatttg ttacataagc
     1981 aggattttct ttattgttat gtgtaaagct taaagtattg tctttaccga tatcaagtta
     2041 aatcgataat cagcgctatc ataatcatcg tttggtaaat cccaaacacc cattttgata
     2101 cttaaatctt ttcctttgta atcatcagga tttttaagat tgatatcctt accattttct
     2161 tcaaaataat ttcccacatc tgaagaccct gtaagattga tttcttcagc aaaagcactc
     2221 gaataaagca aagttgctac acctaagctt agcaatatct tgctcgaagc atttttcttc
     2281 ataagtttct ccttcaataa atttaaactg aaggaataat tatacccccc ccctaaaaat
     2341 aagcttaaaa ataaaactat aaatttttaa tgaaaaatta taaaacctaa tatatcaaag
     2401 ttttaagggt aataaatcgt tcttaacttc atataaaaaa ttctaaaaat ttgaaataaa
     2461 cttatgattt acttaaaatt agcgtgatgg tggaagcgag gggaatcgaa cccctgtcca
     2521 aaaataatcc cacaaagacc tctacatgct tagcaaagat gactacttca ccctacttcg
     2581 ctcatcttcc aaaactcaaa agcaaggcta agaccttatt tcacctcaac gcttgtcaaa
     2641 cgcaaggcta cactatcaaa aatgaccgaa aattaagcta gatagtatga cttaaatttc
     2701 aggctcaact gaacttacgc agctttagcg taagcaggag cgaatttaac gttgtttgcg
     2761 tttaatttta tttgggcttt ttacgctttg cccaaagcga catgccatct aagcagactt
     2821 actcctgtcg aagccaagtc gctcccttat ttagaaataa tatttggaac attaacaatt
     2881 aaaggattaa aaaccgctaa aacagaatca tcattttcat acgaacgaca atatttttca
     2941 aattgatcac tcatcaaaag catccaatcc gtaaattcat cactagcagg cccgttaaag
     3001 cgatttgctt gcgccatcat ctcttcacaa aatacacaaa aatcagtcac ttcttcaaga
     3061 tttaaacgtc ttgctgccca agcggtattg tgtgctaaag tttcaagctc ttttatggct
     3121 tctttataac gcacgctatc gcttccaagc ttgatgatta aaggttcaaa cctatcgcac
     3181 atggttctaa aaaattgtaa aaatttttct atatcgtcaa tttcataatc taattctaat
     3241 tttgttaaaa ttcccatttt taaaccataa tcattaaagt ttaatgtaaa ttctagcaaa
     3301 ttttagctaa aatcttattt taatttttcc aaaatataag caaagatatg gatagaatag
     3361 tagaaataga aaaatactcc tttgatgaaa cttacgaaac ttcgttgcgt ccttcaaatt
     3421 ttgatggtta tataggtcaa gaaagcatta aaaaaaattt aaatgtcttt atagctgcag
     3481 ctaaaaaacg caacgaatgt ttagatcata tactttttag cggtcctgca ggacttggaa
     3541 aaacaacact agccaatatc atctcctatg aaatgggtgc aaatatcaaa acaaccgccg
     3601 ctcctatgat agaaaaaagc ggagatttag ccgctatttt aactaatctt agcgaagggg
     3661 atatactttt tatcgatgaa attcaccgct taagccctgc tatcgaagaa gtactttacc
     3721 ctgcaatgga ggattaccgc cttgatatta tcataggtag tggcccagct gctcaaacca
     3781 taaaaatcga tttaccaaaa tttactctta taggggctac aactcgtgca ggtatgctta
     3841 gcaatccttt gcgcgatcgt tttggtatgc aatttagatt agaattttac aaagatagcg
     3901 aacttgccct aatcttgcaa aaagcagctt taaaacttaa taaaacttgc gaagaaaaag
     3961 ccgcacttga gatcgctaaa agaagtcgtt caacccctag aatagctcta aggcttttaa
     4021 aaagggtaag agattttgcc gatgttaatg atgaagaaat tatcacagaa aaaagagcta
     4081 atgaggcctt aaattcttta ggagttaatg agcttggttt tgatgcgatg gatttaagat
     4141 atcttgaact tttaaccgct gctaagcaaa aacctatcgg acttgcaagc attgctgcgg
     4201 ctttaagtga agatgaaaat accatagaag atgtaatcga gccttattta ttagctaatg
     4261 gctatataga acgcactgca aaagggcgta tagcaagcac gaaaagctat agtgctttaa
     4321 aattaaacta tgaaaaaact ttatttgagg agtaaatttt gcaaaatgga aaattctttc
     4381 ttataagctt tattttagtc attttatttc ttttgcttta cctttttaaa ggttttttac
     4441 ttgtaattat catagctagt ttaatggcgg tagctacctc aaatatcaat gcgaaatttt
     4501 taaatcttac taaagggcat aaatttttag cttccattct tacaacaact tgtatggttt
     4561 tgcttttctt tgcacctttt gtttatgcta tgatagaact tgccaaagct ttaaagaatt
     4621 ttgatattaa tttagttaca caaacacttg attatgtcaa aaactatcaa tttaccttgc
     4681 ccgaaagctt taatttttta gaacctaaaa tcaaagaatt tttagcttct atagatttaa
     4741 atagcatttc taaacaaatt ctaagttatg cttcaagttt tacaaaatca ggagctaaat
     4801 ttcttataga tatggtttta atttgtgtgt tttatttctt tgcaaatcta tatggaacag
     4861 aacttgttat ctatcttaaa tctatcattc ctattgataa aaaagaactc gatgatgttt
     4921 taagcgaagt gggtaatgtt atggctgttg tgctttactc tatggtaatt gtagcaatat
     4981 ttcaaggtgc actttttggt ttaatcacaa tgttttatgg ttatgatgga attttaatgg
     5041 gagtaatttt tgctgtaagt tctctcatac ctgctatagg aggagcttta atttatgtgc
     5101 ctgtaagtct ttatgaattt gcctcaaaca atcttaactc agctcttgtt atttttattt
     5161 attctgtaat tgtaatttct tttatagcag atactttaat caaaccttta atcatcaaat
     5221 ggatcaacaa aaaacttgta aaaactccca ctaaaatcaa cgaactttta attttcttgg
     5281 ccatgatagc aggaatttca acctttggtt tttggggtat tatactaggt cctgcgattt
     5341 taactttttt tgtatcaact ttaagaatgt atgtgatttt aaaagataag aatttaattt
     5401 aacttgcctt aaaaaaggca agttttatgt tctaggcttt tgagcctatc attttagtag
     5461 gatcaacaaa tttattgaaa tcttcttcac taaccaaacc aagctccatt gcgctttctt
     5521 ttaaagaaat acctttttta tgagcatttt tggccacttt agcagcgttt tcataaccta
     5581 tgtgtggatt tagagcggta actagcatta aagaattatg aagattatga tcgattttta
     5641 cacgatttgg ttctatgcct acagcacaat ggatattgaa tgaatgcata gaatcagcca
     5701 acaaatcaag actttgcaag aaattataaa taatcacagg cttaaacaca ttaagttcaa
     5761 aatttccttg acttgctgca aatccgatag ctgcatcatt tcccatcact tgtacagcaa
     5821 ccatagtaac agcttcacac tgggtaggat ttaccttacc tggcataatc gaacttcctg
     5881 gctcattttc aggaatgata agctcaccaa gaccacatct tggacccgaa gctaaccatc
     5941 ttatatcatt tgcaattttc attaaatttg cagccaaacc tttcatagct ccatgagtaa
     6001 aattaatcgc atcatgactt gttaaagcat gaaatttatt tggacttgaa ataaattttg
     6061 tacctataag ttgagttagc tcttcgctta ctttttggct taattctgga tgtgcattaa
     6121 gccctgttcc cactgcggtt cctcctatgg caagttctct taaagttggt aaagaagcga
     6181 tgatttgctc ttttgaatgt aaaagcatag aaagatatcc actaaattct tgcgctagag
     6241 taagtggagt agcatcttgt aaatgcgtgc gtcctatctt gataatacca tcaaattctt
     6301 ttactttttt ttcaaaagtt gcaataagct catcaagcgc agggataagc tttttctcta
     6361 cttgctcaac cgcaacgata ctcatagctg ttggaaaagt atcatttgaa ctttgactca
     6421 tattaacatg atcatttgga tgtacaagct tttctttgcg aaaatccccg cccatgattt
     6481 cagtggcacg atttgcaata acttcattca tattcatatt gctttgtgtg cctgaacctg
     6541 tttgccaaat cgcaagtgga aaattatcat caaatttacc tgcgataatc tcatcgcaag
     6601 cttgaactat agcatttttc ttagcatcat caagtttgcc aagtttgtta ttgaccaaag
     6661 ctaaagattt tttaagattt gcaaaagcat agattaaaac ctttggcatt ttctcacaac
     6721 cgattttgaa attttcaaaa cttctttcag tttgagctcc ccaatatttg tcatttggaa
     6781 ccttaacttc acccatggta tcatgttcaa ctctgtattc cataattttt tcctttgatt
     6841 aaaattttat ttattataag ctaaaaaaat aaatactttc aaaaacgttt tcccactgaa
     6901 ctcattaaat gcaattcata ggcattatga gaaaatctat tcattaacat aaactgccaa
     6961 aatacattgt ttttatataa aaattctgaa ttaaaacctt gacttaaaat attatctttt
     7021 aatttatatt tttgaataaa ag
//
LOCUS       DARGEX010000077         6950 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.077, whole genome shotgun sequence.
ACCESSION   DARGEX010000077 DARGEX010000000
VERSION     DARGEX010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.077"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            14..778
                     /locus_tag="SF010_001356"
     CDS             14..778
                     /locus_tag="SF010_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8230273.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            735..2606
                     /locus_tag="SF010_001357"
     CDS             735..2606
                     /locus_tag="SF010_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8230274.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2610..4247)
                     /locus_tag="SF010_001358"
     CDS             complement(2610..4247)
                     /locus_tag="SF010_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8230275.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4251..5135)
                     /locus_tag="SF010_001359"
     CDS             complement(4251..5135)
                     /locus_tag="SF010_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG8230276.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5188..>6950)
                     /locus_tag="SF010_001360"
     CDS             complement(5188..>6950)
                     /locus_tag="SF010_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8230277.1"
                     /translation="LNLTPSKTSTTSSSFSKTSKNKEHESSDSKNSTQDDTESFLNSL
                     LNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESASFMQILSLLDK
                     LKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLGLNVKNIKVDRL
                     LDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTTHTTSTHSMQKT
                     NSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNTLKNIKNDEFAK
                     NLTEELNIKDQKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQDQNKNLKNNDQ
                     NLNLDKNLNKEIVKDTQNLVSNLTQKDFNLNKESKNNNKENKDIKQNFFDQKLNFENL
                     NKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQN
                     NARNITPKETLQHFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHIN
                     FNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDA
                     LDGKNESEKVNLELVLAKYF"
BASE COUNT         2435 a         1114 c          925 g         2476 t
ORIGIN      
        1 gcaaggaaaa aatatgaaag ttaaatggag tagagatttt agcattaaaa atatgcaatt
       61 agacaaacaa cacgaactaa tttttgaaat taccaatctt gcaaatgatt tagctctaaa
      121 cattcaagat aataatacac aacacaaaaa tgatttaaaa caaattcttg taaagctatt
      181 tcaatacatc aaaattcatt ttaaagatga agaaaaattt atggaaagca ttgattttcc
      241 tttaattgaa gaacataaaa aatctcatca aatattagta gaaaaaacta aagagctttt
      301 agaacactca aatgatattg taaaaatgtc tcaagaactt tccatattaa ccaaagattg
      361 gattttagat cattttgcta atgaagattt atggatagct aattttacaa aaaaaaccct
      421 acaccttcaa gaaatccatt ataccttaga acaatacata aaactaaaat caatcaaaca
      481 agacctaaga gctgaaaaaa ctcatgatta tatttgcaat tgttctttgc gtatccatgc
      541 agttccacag actatacatc aagagcttgt tagcaaagaa aataccttaa agtgcgaaaa
      601 atgtgggcaa attttagttc atttggatta ttttgatttg aatcaaaatt tcgaaaaatt
      661 caatgctatt tttgaagatg cactacaaaa tcaccatttc acgactcaaa aaaatgatat
      721 gggggggggg atagatgaat tttcaagtaa aaaccttaga aactttcaat ccttttgaaa
      781 gtttaaatca tgaacaagca aacacagaac aaattcttga ttttagagtt atagatttta
      841 aacttctgtg ttctagtgta aaaccagcaa aaacaaaaac ttatgaaaga aaggattttg
      901 acttatttta tgcagatgat ttttttgtaa aaaactacaa taccatagtg caaaaatttc
      961 ttatagaaat ttacccaaaa acccaaagtt ttccttttac agtcaaactt agatccaact
     1021 ccaacctaac ccatctaaaa gccagtatca accttacaga aaattttaaa tattatccta
     1081 atttaaaatt tgatattttg caaaatatct acaaaataat gatcaaacaa aaatttttaa
     1141 tcttaagact tgataaaaat ttatttgaca agattgatga ttttatctta tcaatacaaa
     1201 aaagtccatc tattaaagaa atagagcttg aaattgccaa aggtgtagat aagattgaac
     1261 ataaaagtga tgaaattatt tatcatagag atgttaacga agaatgtttt gacgaaaata
     1321 ttaactatga tgaaggaaac tactgtaaac ctattgaaaa aaatgagcta ctttttgaat
     1381 acatttatag aattcttgga aaagaaggac gaaatttaag aggagagata cttcatttaa
     1441 atccaatagc ctttcttgat aatcctttta tcataaaaga tgaaagcatt tacacagaag
     1501 aattagaaga tagaattaaa tattttagtg ccaattatgg atttttaaac aaagatcata
     1561 caggatattg tatcgcaaat aatttaaaat tatcacaaat agggcttaaa acaaccggtt
     1621 caatcaaaac aaataccgat gaaaatataa acttagaaat cactaatttt gatataagtg
     1681 atgatgctat taaatcaggt attgtaaatg ttcaagcttc aaatataaaa gtaaatggga
     1741 atgttggagc aacaaaactt tatggaaaaa atatcagtat caaaggctta actcatgcaa
     1801 aaagcgaaat ttttgcacaa gatattttta ttacaacaca caaaggaact ttgcaagctg
     1861 acactgtata tataaaaaat ttagaaaatg ggacaattat agctaaaaat gtatttgttg
     1921 aaaactgcat gggtggaaaa atagaagcag aaaatattta tatttgcaat ttactaacgg
     1981 ataatacttt atatccaaga aaaaatctaa tcataacaaa caatataaaa tttaaaaaca
     2041 atatcgtagt ttcaccacta gtttctattg aaaacaactc agatacagaa tgcgaaaatc
     2101 ttaaaaatct aagccttaaa ataaaaagta agcttgatga caccataagc aaaatgcaaa
     2161 attactatga ttatctaatc aaaaatcaaa tcaaaatcat caaacttcaa aagactaaaa
     2221 atcctagcgc catagaaatg aaattttcaa atctttatca cgatatcata aaaaaataca
     2281 atcatcttag catttcgtat aaaaaacttg taaaattaaa atatcaaatt gatgcaaaat
     2341 taaatttctt aaatgaaatg gtttacaatg taaaaatata cataaaagcc gaaaatatcg
     2401 gagaggataa ttttttaaaa ttttatccta acacaaacac caaccttgaa ctaaaacatc
     2461 atataaattt aaaagactat gaaaaggttt tatatcttga aaaaggacag caagtaagtt
     2521 atattaaatc aagccataat tatagcgaaa gcgacataga agaaattaaa attatttttg
     2581 aaaaattaga aaaagataat tcctaagaat tatcttttca tattaatggc tttttgtatc
     2641 atctgatcac ttgtagtgat actttttgag cttgcatcaa aagctttttg agttacgata
     2701 aggtttgaaa gctctgcgct taaatcaaca tttgattgtt ctaagaatcc gcctttaaat
     2761 ttagctgtat taacaacttg accatctttc ataataaaac ttgcatcacc gctatttgcc
     2821 gttgctgcaa aaatattatc tcccatagca actaatcctt gctcattgat aaaattatat
     2881 aaagcaagct ttccaactat agcattttta ccattgctaa attgcgcaac aatacttcca
     2941 tcatcggata tattatattg ttcaaaaaac ccttcagcta caccatcttg ttgtgtaact
     3001 acattttttt cgacgccttg tttaatataa atcccactat aacccgaacc aggcttgtta
     3061 gcatcataag gagaacctaa atcaatatta attgttccac catttggatt tgcaatgctt
     3121 gtaatattgt tttgaagcaa agcaccattt ttatcaaaaa ccatatttcc ttcagtcgga
     3181 ttgcctacgg cattgccatt agaatcataa atttgtgcaa tagctttata ttgtatatta
     3241 tcgccttctt gcggtaaaac tctttcaagt gtaaccctta aagtgctttt acttccatct
     3301 gcattataaa taggggattc taaaatatct ttattggctt tttgttgctc tgttgaaatt
     3361 tgagctgtat caagcttgat gctattttca tccaatcctt ttaaatcaag ctcgttactt
     3421 ttaaaattta gattttcatc taaagtcgct tcaaagcttg tttttacgcc attatcatca
     3481 gtgaaattta aaataatcct atcacccgct ttagcactaa acacatcttc tttgctaaca
     3541 ctaccactaa ctacatattt tccatcttca gtttttgtaa tgttaaattt actaggatca
     3601 agatctactt taactacttc tgttgttgtg ttagtattta aacttccact ccattttaca
     3661 ttttgagtta cttgaggagg taaatacata ttcacaggta ctttaatagc cccttgagaa
     3721 gcggttgtgc ctatactgaa agaattattt gaatttacag taaaaccatt atttaccgga
     3781 gttcctgtgt taagataatc ccccataagc ccagcaactc tatcgctata gttaatacca
     3841 gtaaaagcag gattcattgt tcctaaaaca aaatttccat aagaatctac caaatatcca
     3901 ttggcatctc ttctaaatga tccatttcta gtatagtaag cattgccatc agcccctaaa
     3961 accccaaaaa atccttttcc ttgcaaagcc acatcaaatt cgccatcact tgcaacagga
     4021 gaaccctgtt cgaaaacaac ttgagaagat gctgcaccgc taccataacc accttgagca
     4081 gggttggttg attgggttgt tatggtagta taaaaaatat ctttaaattg agcatcagag
     4141 tatttaaagc ccgtggtatt gacatttgct atgttattag cagtgatatc aataccaaag
     4201 ctattgcttt ttactccaga aatcccatta taaaatgaat tcatcatggc ttatgccttt
     4261 tcctctttgt cgccatcttc tgtagatcca gacccagaag aatctccatc gcttgaacca
     4321 ccacttgagt ctccacttga accgcttcct ccagtagatg aagatgaacc aagcttataa
     4381 tctgttattt cttgtattgc atcaaaagga acttcttgtc cagccatttt tgcataggca
     4441 acaccatctt taaaaacaac accttcgata ggataagttc cgtaatttgc agtgattttt
     4501 tcaccatttt tattattata aaccatttta acagtgtact caccatcacc tgcataaacc
     4561 ccatcgttat ttcttcctgg ccactccata gtaaataaac cttgagaaat agatttagca
     4621 tcgctttttt cactgaaaac aagtttatta ttgctatcat aaatttctag cgtaacaccg
     4681 ttttcatcag aatcttcagg caaatacatt ttaagagcga taagctcatc tgcacctgta
     4741 agtttgattt tattatctga aacagttgcc attttaccaa tagcccctaa agctgaagta
     4801 ctcatacttg tactaaaaga atcagaaagc ttttgcatag tttcaaccat tttttgcata
     4861 gttgtattgg tattttgctg catttcaagt gcgctaagct gcgaagtttg agtaagcatt
     4921 ttatcgctat ccataggatc tgttggatct tgatgttgaa gctctatcaa aagaagtttt
     4981 aaaaacgcat ccttatctaa ggtagcgttt ggattgctca ctattcctga gctactgctt
     5041 gaatctgttc tagttgttcc actagtactt cctgaagaag tagtacctga agttgtagca
     5101 gtggtattta aattccaatc cgatgatgat atcattataa actccttttt atttagtttt
     5161 ttattattta agcaataagt gttccaatta aaaatacttc gctaaaacaa gctctagatt
     5221 gactttttca ctttcatttt ttccatctaa agcatcttta aaaccatatc cactacgatt
     5281 ttttccttga ttttgatttt gctctctttt accttgatca ctaaaattca tttcaagtcc
     5341 agtaaatccc atatttacaa gagaattttt aaactcggct tgattttgga taaacaaatt
     5401 cattgcattg gtattggagt tgaaattgat atgaaggtta ttgcctcttt gtatcaaagt
     5461 tacctccact tctccaagat tattaggatt tagagtgatg ctaagtttag taataggcgc
     5521 tttatattga tctacagcct cttttaaatc ttgtgaaaaa tgttgcaaag tctctttagg
     5581 agtgatattg cgagcattgt tttgtgttac tttatttaag tctttgacta aagaatttaa
     5641 ctcatctaaa ctatttttat ctacattttc actgtgcgtt tttgtttgct cttgagtaaa
     5701 agtttcttta ttagtagtat tgttattaaa atttgcatta ttctctttgt tttgaactac
     5761 ttgagtttta tttaaatttt caaaatttaa tttttgatca aagaaatttt gttttatatc
     5821 tttattttct ttgttgttgt ttttagactc tttatttaga ttaaaatctt tttgtgttaa
     5881 attggaaact aaattctgag tatctttaac aatttcttta tttaaatttt tatcaagatt
     5941 taaattttga tcattgttct ttaaattttt attttgatct tgtatatttt cttgatttaa
     6001 attgtttttt tcttgatttt tatttaactc tttattaaaa tctttgttta agtctttgct
     6061 ttctttattt aaattatctt ggtttttttg atcttttata tttaactctt ctgttaaatt
     6121 ttttgcaaac tcatcatttt tgatattttt taaagtattt ttagcatctg tggtatcttc
     6181 ttctattttt gatttaactt tatcgttttt ttcgtgtttg ctttctttgg atgaaagtat
     6241 ggaatctaaa ttttttaaag tttgagaaag caaagaaccg ctatctttag aatttgtttt
     6301 ttgcatagaa tgagtgcttg tagtatgagt tgtattttct aaattgtgat ttaaattttt
     6361 actcacattg gaaattttat tattgatgat ttctttaaaa acattatcca cagcaccctt
     6421 aaaaaaatca gccttatcta aatttggaaa agttgcttta agatcaagaa gacgatctac
     6481 tttaatattt tttacattta agcccagatc tttagctatg tccaaaagct cactaagatt
     6541 tgatgcacct tttaaagcat taaaattagc ctctgtttta ataagacttg aaagttgagt
     6601 agaaagattt gctagtttaa catctgctgt atctgttttt agcttatcta acaaagaaag
     6661 aatttgcata aaagaagcag attcgaaaat gcttatctta tcgctctcat caaaagctcc
     6721 tttttgaagt ctgctcatcg cttcattaac aacttctttt tgactgatct tcatatgatc
     6781 aggtaaaaat tcattggttt cattgataga attaagcaaa gaatttaaaa aactttccgt
     6841 atcatcttga gttgaatttt tactatcact actttcatgt tctttatttt tactagtttt
     6901 actaaaagaa ctgctagtag tagaagtttt actcggcgta agatttaaaa
//
LOCUS       DARGEX010000078         6731 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.078, whole genome shotgun sequence.
ACCESSION   DARGEX010000078 DARGEX010000000
VERSION     DARGEX010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6731
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.078"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..448
                     /locus_tag="SF010_001361"
     CDS             <1..448
                     /locus_tag="SF010_001361"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HEG8230278.1"
                     /translation="KQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNF
                     KIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEK
                     ELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL"
     gene            527..727
                     /gene="rpmE"
                     /locus_tag="SF010_001362"
     CDS             527..727
                     /gene="rpmE"
                     /locus_tag="SF010_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG8230279.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            730..1554
                     /gene="rsmI"
                     /locus_tag="SF010_001363"
     CDS             730..1554
                     /gene="rsmI"
                     /locus_tag="SF010_001363"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG8230280.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            1568..2251
                     /gene="rlmB"
                     /locus_tag="SF010_001364"
     CDS             1568..2251
                     /gene="rlmB"
                     /locus_tag="SF010_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG8230281.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLNSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            2244..3182
                     /locus_tag="SF010_001365"
     CDS             2244..3182
                     /locus_tag="SF010_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230282.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            3176..3982
                     /locus_tag="SF010_001366"
     CDS             3176..3982
                     /locus_tag="SF010_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230283.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            3994..5196
                     /locus_tag="SF010_001367"
     CDS             3994..5196
                     /locus_tag="SF010_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG8230284.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYIVVNFPHNPTTVTCEKSFYERLITTAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            5200..6447
                     /locus_tag="SF010_001368"
     CDS             5200..6447
                     /locus_tag="SF010_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG8230285.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGRDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRID"
     gene            6447..>6731
                     /locus_tag="SF010_001369"
     CDS             6447..>6731
                     /locus_tag="SF010_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG8230286.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFYSKFGEIDIIAK
                     KDEILHFIEVKFTQDDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQID"
BASE COUNT         2578 a          842 c         1144 g         2167 t
ORIGIN      
        1 aaaacaaagt gaattaaact tagccttagc cattatagat attaaaattt tagaaaaaac
       61 tctacctttc ttaaatgaac ttggagtaaa aaagttacat ttggttttta caaatttttc
      121 acaaagaaat tttaaaatcg atttagaaag atttgaaaaa atcattattt cttcttgtga
      181 acaatgcggt agaaatacta aaatggattt aattatccac caaagcactc aagaatttgt
      241 tcaaaaattt ccaaatgcaa ttatggttga ttttcaagga gaacaacaaa gtcatttcga
      301 tgaaaaagaa ttatatttta taggtcctga aggtggattt aacaatgatg agagattatt
      361 gtttaaccgg aaaatctctc ttaaaagctc taatattcta aaaagtcaaa cagctattat
      421 agctatagct tcaaaaattt tgctttaact tttcttaaat taatctcttt tttatgttaa
      481 ataatttata atcacggctt attgttttaa tttttaagga aaactaatga aaaaagaaat
      541 tcacccagaa tatgtagaat gcaaagtaag ttgtgcttgt ggaaatactt ttacaacaaa
      601 gtcaaacaaa gcagaattaa gagtagatat ttgttcaaat tgccatcctt tttttacagg
      661 cagtgaaaaa attgtagatg ctgcaggtcg tgtagagaaa tttaagaaaa aatacgcaat
      721 gcaataatta tgctttattt tattcctact cccataggaa atttaagcga tatttctttt
      781 agagccttag aacttttaaa gacttgcgat cttgtgtttt gcgaagatac aagagtaagt
      841 aagtctttga tttcgttatt aaataccaaa tttcacactg atatacatat ttctaaattt
      901 atagccttac actcccataa tgaaaaagaa gttttagcaa gtattgattt aaagatattt
      961 gaaaaaaatg tagcttattt aagcgatgca ggaatgccag ggattagtga tcctggcaag
     1021 gctttggtag aatttgcaca agaaaataat atcacctatg aaattttacc aggtgcaaat
     1081 gcagccttag ttgctcttgt aagctcagca ttttgtcaaa aagaatttat ctttattggt
     1141 tttttagcaa ataaaggcaa agaaagacaa aaagatatag aaaaaatttt aaactttcct
     1201 tatccaagta ttatttacga atcccccaag cgtattttat ctttagtaga acagattatg
     1261 attctagaca gccaaagaga aatttttttg attaaagaaa tcagtaaaaa atttgaaaaa
     1321 aaatttaaag gcaatgctaa agagctttct gaaattttaa aaaagtctaa tttaaacggt
     1381 gaatgggttg tagtactgca atcaaaagag caaaattttt tgcaaaatac tctttgtgaa
     1441 aaagatatta tggatttaga gctgtcttta aaagcaaaag caaaattatt atcaaagatc
     1501 aatggaaaaa atgcaaaaga aatttatcaa aaactgcttt taagtcaaga ttaggtaaaa
     1561 ttttaatatg atagtttatg ggaagcaaat atttttttat attttagaat atcataaaga
     1621 ctgtatcaat gagctttatt tagcaaaaga atgtgataaa attacttttt ccaaaatcgc
     1681 aaaatcaggt tttaaaatca aaaaacttga ttttaaaact gctcaagctt atgcgaaagg
     1741 tggaaatcat caaggttttt tgctagatat taaagaaagt tcttttgcga atttaaatga
     1801 gatcaaaaaa aatgatttta ttgttatgct ttatggaatt agcgatgtag gaaatatagg
     1861 ggctatcacg cgtacagctt atgctttagg ggttggggct ttaattttta ttggtgaaaa
     1921 attagccatg gaaggagtaa ttcgcacaag cagcggagcg gctcttgatt tacctattgc
     1981 aataagcaac gatgctttaa gtgtaataaa cgaactaaaa caagtaggtt tttattttta
     2041 tgcgagcgat ggctcgggaa aagaaattca cagtgtaaaa ataagcaatg gtaaaaaagt
     2101 tttagttttg ggtagtgagg gttttggttt aaactctaaa attataaaaa agtgcgatga
     2161 atgtgtgggc attgcgatga aaaataattt tgatagtctt aatgtcagcg ctgcttttgc
     2221 aatactttgt gataggatgt taaatgctta attggaaaaa aatacaagaa ttaaatttaa
     2281 aagaagttgc agcaaaaacg caaattgaac ttgattttct tgaagcttta gtagaaaaga
     2341 attttgctgt tttaagtcgt tttaatgtta aaggttttgt taaaatttta agcagagaat
     2401 acgaactcga ctttagtgat tttaacgaag agtatgaagc ttatcttaac gaaaacaatc
     2461 ctactccaca aacaaaatca aaaatgataa ccccaaaact agatgcttat agtcaaaaat
     2521 cctctaacgc ttggcctttt ttgattgttc ttattgtttt agtgattata ggaagtggaa
     2581 tttattattt tgatacactt aaaacttttt tcaaagatga acaaaataat actagtgcaa
     2641 cggttataga cataatagga caagcacaag aaaatttaaa atctttaagt ggaaacaatg
     2701 ttgttgttat agacaacaat aaagcacaag aaacaaatca aacagagagc gttttaccaa
     2761 gccaaaacac ctcattacaa gaaaatgata aaaacataag catagaaaat aatatcagtg
     2821 aaaataacac aactctactc gatgaagaaa aaaataccca aatccaagaa gacacaaata
     2881 cactaaaaac tgattcttta aaagaagcac attttaaaac ctctaccaag atttggatag
     2941 gtttgataga tttaaaaagc cttaaaaaaa caagctttgt taaagaaaaa gattttaata
     3001 tttctttaga taaagatcag ttaattttaa caggggctgc agctttaaca atgtttgatc
     3061 aagaaaataa agaacaaaaa tttcctgtag gaatttcaaa acgtttcttg attaaagatg
     3121 gaaaaattac cagtatttca gctgctgaat ttgtaaaatt aaataaaggt aaagaatggt
     3181 aaaaaaaatt attattctta ctttttgggt taatatatct tttgcaatct caagtcttga
     3241 attagcaaaa aatttagtaa acaatcctag taaaaattct caactagaat tattattctc
     3301 aaataattct tacatagata ataatggaaa ttgtgatatt gcaaaaatat ctcaaatatt
     3361 aaaaaccaat tctttaattg ccttaacact atcaaatcct caaagtctaa aactaaattt
     3421 taaagcaaaa gctgatgaag ttatgttttt taaaatttta tccgatgttt taacagatgc
     3481 cggatatata tattttatcc ctacagattt gattttaaga gaaggaaata ttgactatac
     3541 catacaagta gaatctcaat atgttttaga tcctggaacg ctttacaatc tcttaaaaga
     3601 aaattctgtc tatatagata atattaagcg cattggagca tatgactatg aatatgattt
     3661 aaatttttcc aatgctgtat taaaaaccaa tacaaatgtt aatttaaata ctccaaaatc
     3721 attagaaaaa ccccttaaag actatgtgct tgatttaaaa aatgctacaa atttgattat
     3781 tgatgcaaat gatttagaca attggtttcc taaaatcttc tttttagata aaaatctgaa
     3841 tctaattaaa gcagtaaaaa gcgaaaataa aaataatcat ttttcagaac ttattccaaa
     3901 tggtgctata tatgctattg taagcgatat gtatagttta gataatatac gcaggggttt
     3961 aaaaatcaca cttaaaaaat aaaggattaa gaaatgtttg atgaaatccg ttttaatacc
     4021 atagaaagac ttccaaatta tgttttcgca gaggtaaatg cgataaaaat ggcagcaaga
     4081 cgtgctggag aggacatcat cgacttttca atgggaaatc ctgatggtaa aactccacaa
     4141 cacattatag ataaactttg tgaaagtgct aacaaagata aaacctcggg atattctaca
     4201 tccatgggga tttataaact tcgcttagca atttgtaatt ggtataaaag aaaatataat
     4261 gtcaatttag atcctgaaaa tgaagttgta gctaccatgg gttcaaaaga gggttttgta
     4321 aatcttgcaa gagcgattat aaatcctgga gatgttgcta ttgtgccaac tcctgcttat
     4381 cctatacata ctcaagcttt tattatagca ggaggtaatg tagcaaaaat gcctttagct
     4441 tataatgaaa aatttgagct tgatgaaaat caattttttg aaaatttaca taaaacttta
     4501 aatgaaagca tcccgcgtcc aaaatatatc gttgttaatt tcccgcataa tccaacaaca
     4561 gtaacttgtg agaaaagttt ttatgaaaga ttgataacaa cggcaaaaaa agaaagattt
     4621 tatattattt cagatattgc ttatgcagat ttaacttatg atgactataa aactccttct
     4681 attttggaaa ttgaaggcgc aaaagatgta gcggtagaaa cttacactct ttcaaaatct
     4741 tacaatatgg caggctggcg tgtgggtttt gtagtaggaa ataaacgctt agtcagtgcg
     4801 cttaaaaaaa taaaatcttg gtttgattat ggtatgtaca cacctattca agtagcagct
     4861 accatagctt tagatggaga tcaaacttgt gtggatgaaa tccgtgcaac ttatgataaa
     4921 agaatgcaca ttttacttga agcttttgaa aatgcaggct ggaaacttca aaaaccaaga
     4981 gcaagtatgt ttgtttgggc aaaactccct gaaagcaaaa gacatttaaa aagtttagaa
     5041 ttttcaaagc aacttttaca gcgtgccagt gttgcagtaa gtcctggggt aggttttggc
     5101 gaagcaggtg atgagtatgt aagaattgct ttaattgaaa atgaaaatcg catacgccaa
     5161 gctgcacgca atatcaaaaa atatttaaaa gaataagtta tgaaagtagc gattcttggt
     5221 tatggcactg ttggaagtgc ggtggttaaa tttcttttag aaaatgataa acttattcgt
     5281 gcaagatgtg ggcaaagcat aactcctgtg atcgctcttg ctagaagtcc taaaaaaaat
     5341 gctttaattc caattactca tagcgttgca gaaattttaa atgctgatgt agatgttttt
     5401 gtagaattaa tgggtggggt ggatgaagct tttaaaatag tgagtgaaat tttaaaaaag
     5461 aaaaaagctg ttgttactgc aaataaagct atgcttgctt atcatcgtta tgaacttgaa
     5521 aatttggcta aaaatttagc ttttggttat gaagcaagtg tggctggagg aattcctatt
     5581 atcaaggttt taaaagaagg tttaagtgca aataatattt tggctataaa agggatttta
     5641 aatggtacga gtaattatat tttaagttct atgagtcaaa aaaatatgag ttttaaacaa
     5701 gctttgcaaa tagctcaaaa tttaggttat gcagaggctg atccaacttt tgacatagaa
     5761 gggcgagatg cagcacataa actgcttgtt ttatcaagta tcgcttataa tcttaaagct
     5821 aaacctgaag atattttgat cgagggtatt agtgaaattg cacctgaaga tatgtatttt
     5881 gctaatgagt ttgaatttac cataaaactt ttaggtatag ctaaggtgcg tgaaaataaa
     5941 gtagaattaa gggtgcatcc tactatgata gataaagaaa aaatgcttgc aaaagttgat
     6001 ggagtgatga atgctataag cattaatgga gatttgttgg gtgaaagttt gtattatgga
     6061 gcaggagcag gaggagaggc cactgcaagt gctgtgattt cagatcttat ggatatagca
     6121 agagatcagg taaaagcacc aatgcttggt tttgtgaaca ctttagaata cgagctttta
     6181 agcaaagatg aaatttatac aaaatattat ttaagggtga aagttgaaga taaaataggg
     6241 gttttatcta aaatcacaca attgatgagt gaaaataata tttctatcga tagtttctta
     6301 caaaaaccta aaaaaaatga tgaaaattac agtactttgt tttttactac gcatttaact
     6361 tatgaaaaaa gcatacaaaa tttgcttgaa attttacgca aacaagattt tataaaaacc
     6421 aaacctttta tgatgcgtat agattaatgg gtttaaaagc ttatttagat ggaattttag
     6481 gtgaagataa ggcttgtaaa tttttaaaaa aacagggctt tgaaatttta aaaagaaatt
     6541 tctattctaa atttggagaa atcgatataa tagccaaaaa agatgaaatt ttacatttta
     6601 tagaggttaa atttactcaa gatgattatg aagtttccga gcgtttggat agaaaaaaac
     6661 ttgaaaaaat tttaaaaact atagaatttt atcatcttaa aaatggaatt tcatcggatt
     6721 ttcagattga t
//
LOCUS       DARGEX010000079         6703 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.079, whole genome shotgun sequence.
ACCESSION   DARGEX010000079 DARGEX010000000
VERSION     DARGEX010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6703
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.079"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..493
                     /locus_tag="SF010_001370"
     CDS             <1..493
                     /locus_tag="SF010_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8230287.1"
                     /translation="KEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIR
                     RNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNAN
                     LYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQ
                     GIS"
     gene            468..659
                     /locus_tag="SF010_001371"
     CDS             468..659
                     /locus_tag="SF010_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG8230288.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            659..1201
                     /locus_tag="SF010_001372"
     CDS             659..1201
                     /locus_tag="SF010_001372"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEG8230289.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            1250..3463
                     /locus_tag="SF010_001373"
     CDS             1250..3463
                     /locus_tag="SF010_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG8230290.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KAKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            3460..4101
                     /locus_tag="SF010_001374"
     CDS             3460..4101
                     /locus_tag="SF010_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8230291.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4098..5030
                     /locus_tag="SF010_001375"
     CDS             4098..5030
                     /locus_tag="SF010_001375"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG8230292.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5197..5979
                     /gene="fdhD"
                     /locus_tag="SF010_001376"
     CDS             5197..5979
                     /gene="fdhD"
                     /locus_tag="SF010_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG8230293.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            5972..>6703
                     /locus_tag="SF010_001377"
     CDS             5972..>6703
                     /locus_tag="SF010_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG8230294.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGK"
BASE COUNT         2321 a          849 c         1424 g         2109 t
ORIGIN      
        1 taaagaatat gatttgcttt ttttaagtct taaaaatagc attccaacga ctttttctta
       61 catagaagaa ggttttgaaa attcaaatcc tttactttgc gtgcgtcaaa ttttagtcaa
      121 aagtaaaata agacgcaatg aaaaattttt taaagaaagt gaagatagtg ttggattttg
      181 tttattgttg atgagtgaat ttttaaggca aaatgaagat gatttagcca aagagctttt
      241 tgaaaaagtg atcaataaaa gcattgatga gtttttaggc gatgttttca tgaataaaaa
      301 tgcgaattta tataaggaaa ttgcaagtat tgcatcggct tttatggaat ttgaaagact
      361 ttgctttgaa gtggaaaaac ctgcaaaaat aaattctaaa aaagtgcaaa acgatctatc
      421 gcgttcagaa tttttaagaa gagaagcaaa taaacaaagg aggactcgtg aaaaatcgca
      481 gggaatttct taaaaaatcc gcttttgcct taggggctgc tggagtgctt ggtagcacga
      541 ctttagctct agctaaagat gaagaaagaa aagatttggt taaaggtaaa agtaagaaaa
      601 aagaagtgct ttttcaaaga agtgctaatt gggaaaaata ttatataaag gctgagtaat
      661 gtcaagtgta ggtgaaaata tcaagcttac gcgtcgttct tttcttaaaa tggcagcact
      721 ttcaagccta gcaacaccgt tgcttgctag aagtgaaact ttaagagaag cgagtgctga
      781 tgagcttaaa gaagcgtatg aaggtagtaa aaaagtaaaa acagtttgta cagcctgttc
      841 tgtaggctgt gggattattg cagaagtgca aaatggtgtt tgggtgcgtc aagaaattgc
      901 tcaagatcat cctgtgagtt caggtggaca ttgctgcaag ggatctgata tgatcgatat
      961 ggtgcgttca catgtgcgtt taaaatatcc catgaaaaaa gaaaatggag aatggaaacg
     1021 cataagttat gagcaagctt taagtgagat cggagaaaaa ctagctgctt atcgtaaaga
     1081 aaatcctgaa agtgttatgt ttttaggttc tgcaaaactt aataatgaac aagcttatta
     1141 tataagaaaa tttgcagcat tttttggaac gaacaatgta gatcatcaag ctagaatttg
     1201 acacagcgca acagtcgccg gtgtggcgaa tacatttggt tatggcgcta tgacaaacca
     1261 tcttggagac attcaaagaa gtaaatgtat cattatcatt ggagcaaatc cagcggtaaa
     1321 tcaccctgtg ggttttagac atttcttaaa agcaaaagaa aaaggtgcaa agcttattgt
     1381 tgtagatcct agatttacaa aaagtgcagc aaaagcggat atttatgcaa gaattcgtcc
     1441 aggaactgac attgctttca tgtatggaat gttaaaaatc atttttgatg aaggcttgga
     1501 agatacaaaa tatcttgatg aaagagtttt tggaattgat aaaattcgtg aagaagcagc
     1561 aaaatggaca gctgaagaag tggaaaatgt tacagggatc tctaaagaac ttttggtgca
     1621 aatcactcac gaagtagcta aaaacaaacc aactacgctt atttgggcta tgggtttaac
     1681 tcaacatact gtaggaactt caaatacacg tttagcacct attgtgcaaa tggtacttgg
     1741 aaatataggt aaatttggtg gtggagttaa tatcttacgc ggacacgata atgttcaagg
     1801 tgcttcagat atggcttgtt tgagcgaaaa tttaccaggt tattatcctt taaatgaagc
     1861 gacttggaga tactatgcca aaatttgggg tgtggattat gagtggcttt taggaaattt
     1921 tgtaagcaaa gattggatgc ataaaactgg gctttcactt gctagatggt gggcagcggc
     1981 tttaaatgga aaagatggaa atgatgctat cgataatgca ggaacgcctt taaaagcttt
     2041 agtagttatg ggaaatggta ttacttcgac tgcacaacaa gtaaaagtta aagaaggttt
     2101 ggaagcttta gagcttttag ttttagccga tccttttgta aatgaagcag ggattattgc
     2161 agaaagaaaa gatggaattt atcttttacc tgcagcaaca cagtttgaaa caagcggaag
     2221 tgtaacagca acaaatcgta gcggacaatg gagatttaaa gttgtagatc cactttatga
     2281 aagcatggaa gatcaagaaa ttttatttga gcttgctaaa aaattaggtt tttatgaaga
     2341 ctttaccaag actttacgcg atgaaaaagg tgagattgtt tggcctgaaa atgcaacaag
     2401 agaaattgca aaagcagtta gaagtatagg gcttaatggt tggagtcctg aaaggcttaa
     2461 aaagcatact ttatactggg ataaatttga tgaggtaact ttagaaggaa aagacgaagt
     2521 tgctggcgag tattacgggc ttccttggcc ttgttggagt gataagcacc caggttctcc
     2581 tgtgctttat aataccgaca ttgaagtagc aaaaggtggt atgggcttta gaaacaattt
     2641 tggacttgaa tatgaaggag agagtttact tgctaaaaat gcacctttaa attcgcctat
     2701 tgatacaggt tatccacaaa ttactaaaga taatatagaa aaagttttag gcattacttt
     2761 aagtgcccaa gaaaaagcta aaatgggatc aacttggtct tatgatgata gtaatatcat
     2821 agcaactaaa tgtatagaaa aaggcatagt tccttatgga aacgctaaag ctagagctgt
     2881 agtttggact tttaaagata aaattccact ccaccgtgag cctttacatt ctccaagaaa
     2941 cgatttggtg caaaaatatc caagttttga agatcaaaaa gcgctttacc gcgtggatac
     3001 taaatttgtt tctgtgcaac aagctaagga ttattctaaa gaattcccgc ttaatcttgt
     3061 tactgcaaga cttgtgaatt taaatggtgc aggtatggaa aatagagcat ctatgtatct
     3121 aacgcgttta acacctgaaa tgttttgtga gatcaatcct gaattagcaa aagagcaaga
     3181 cattaaagca ggagatatga tttgggtgca ttctccagaa ggtactaaaa ttcatgtaag
     3241 agtgaaggtt aatccaggtg tagcaaaaga tatgattttc ttgcctttcc attttacagg
     3301 agttatgcaa ggcgtggatt taacgcacaa tttcccagaa ggaactaagc cttatgcaag
     3361 cggagaaagt gctaatacgg taacaaatta tggttatgat atcatgtgtc agattccaga
     3421 gactaaaggt ggactttgta gaatcagtaa ggatggaaaa tgagtaaggt aaattttgca
     3481 aatttagaaa aagaacgctt gaaattcttt tgtgataatg agcgttgtat tgattgtaat
     3541 ggttgcgcgg tagcttgtga tgaagcacat gagcttccta ttcatattcg ccgccgccgt
     3601 gtgattactt taaatgaagg aattcaagga aaagaagttt caacttctat ttcttgtatg
     3661 cattgtgatg atgctccttg ttctatcgtt tgtcctgtgg attgttttta catccgtgct
     3721 gatggtattg ttttacacga taaagaaatt tgcataggtt gtggatattg tctttatgct
     3781 tgtccttttg gtgcaccaca atttccaaaa gatagtgttt ttggaaataa aggcattatg
     3841 gataaatgta ctatgtgtgc aggtggccct gaagcaacga attcagaaaa agaaagagaa
     3901 ctttatggtc aaaatcgtat cgcagaagga aaagtccctg tatgtgctgc gatgtgttca
     3961 acaaaagcac ttttagtagg tgaaagttct aaaatagaag agatttatca taatagactt
     4021 atgaatagaa attatggcat tccaaatcct tcggaaagtt tggaatggaa gattgcttac
     4081 acaggaaagg aacgcttatg agaaaagtat ttgtaacgct tttattaagc gtagtgagtt
     4141 tatttgctta tggtagcgag agaatgggac aagatactca aatttgggat tttcatcgta
     4201 ttacaaatat cccaaattat gatacttttg gcaaactttg gacaactttg caaggtgaat
     4261 atatagctac tatagcttta atcgctgtta ttgcggtatt atctgcattt gctttgcatt
     4321 atatggttat aggacctaag caattttcac acgatggaaa gaaaatttat gcttttacat
     4381 tatttgaaag actttttcat tttatcgcgg caatttcttg ggtgatttta gtgccaactg
     4441 gttttgtgat gatgtttggg gcgacttttg gaggcggact ttttgtaagg gtttgtaaaa
     4501 atttacatgc ttttgcaacg gttttattta tcatctctat aatccctatg tttttatggt
     4561 ggattaaaag aatgcttcct gcaagttatg atatcagatg gatgatgata gtaggtggtt
     4621 atttaagcaa agtaaaacgt cctgtacctg caggtaagtt taattttggt caaaaatctt
     4681 ggtattatat agctgtattt ggtggatttt tgatgataat tacaggtgga tttatgtatt
     4741 ttcttgattt taattccacg gcaattcaag gtctttttgg tttaactcaa attgaacttt
     4801 taagaatttc agctatagtg cataatttct tgggtatagt gtgtgcagtg ttttttggtg
     4861 tgcatattta tatggcagta tttgcaatca aaggcagtat ccattctatg attagtggtt
     4921 ataaagaaga agaagaggtt tatattttac attcttattg gtataaagaa ttaagcaata
     4981 aaaagcaaat tgaacctagt ttttcttatg atcctaatgt aaaaatttaa tctttaaccg
     5041 ctatgttatt gcatagcggt agttttaagc ttttttgaaa taaatagaac gaattttctt
     5101 ttataagttg aatctaaaat ctatttttcc atatataaat ttgttattta tgtttttttg
     5161 atataatatt atttaaagat atttaaagga taaggtatgg atccgttatt tacaactcaa
     5221 attttaaaat ataaaggtga tgaatctttt acatgcaatg atactttagt gcgtgaaatt
     5281 aagcttgaaa tttttattaa tgatgaaaaa gtaggtgctt taatggcaac tcctgtagat
     5341 gaacaggcat tagcaatagg atatttaatg agtgaaaata tcattgcgaa agtaagcgat
     5401 attgagagca tagaaacaaa agatgatggt atgagtgtgc atattaaagc aaagattgat
     5461 aaagaaaatt tagcaaagct taatgctgaa ggtgtagtta taagtggttg cggtagagca
     5521 catactgcca atatcgatcc agaagctatt gaagcgagta aaattagttc tgatgcaaaa
     5581 tttagcaaag atgaaatttt aaaacaaatg agtacttttt atactcaatg cgagctttac
     5641 gagaaaacag gctgtgtgca tacggctaag ctttttgtag atgagaaaac tttttttata
     5701 ggtgaagata tagctcaaca taataccata gataaagctt taggaaaagc acgtttagct
     5761 ggggttgatt taagtcaatg ttttttaatg gttagtggaa ggctaagttc tgaaatggta
     5821 gctaaagcag ttatgcataa aattccagtg cttgtttcac gcacggctcc tacttgttta
     5881 ggggttatga tagcaagaaa atttgattta acgctttgtg gttttgctag agaaaataag
     5941 atcaatattt atagtggaga atttagaatt catggataaa aatcaagaaa aagaaatcat
     6001 ctcatacatg agagaattgt taaatagcaa tgaaaaatta gattgtggta cggcttttaa
     6061 aattgcaaag aaatttaata taaatataga aaaaatcgga caattagccg atgaaaatca
     6121 catgagaatt gataattgcg agttggggca atttggacat ttagattttg aaaaagcaaa
     6181 gattgaagtg cttaaaaaaa tagaacctag tttagatgaa aagcgtagaa ttttttgtaa
     6241 agatgcaaga gatattgcta aagaaggttg tggacttaaa agtatgcgtt cagctttaaa
     6301 aacttataag gttgatgtaa agtattgtca acttggttgt tttaaagaaa aaaaaggtaa
     6361 gcaatttata gtaagaacaa aaacttggat tgaaaatgcg gatggagatt tgctttttgg
     6421 tcgaggaaaa acagaacttt tagaacttat cggacaaaca ggtagtttat tacatgcttc
     6481 taaacttatg gggattaatt ataaaaaagc ttggatgcat ttacaaacct tacaaaaaaa
     6541 ttctcaagaa attttagtta gcacaagaca aggacgctct aaagaatcag gaacaaaact
     6601 tactcctaga gctatggaat tgatggaaaa ttactctatt ttgcaaaaag acatagaaga
     6661 atacgctaat aaacgcttta aagaattgtt tttaaaagga aaa
//
LOCUS       DARGEX010000080         6686 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.080, whole genome shotgun sequence.
ACCESSION   DARGEX010000080 DARGEX010000000
VERSION     DARGEX010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6686
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.080"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..166)
                     /locus_tag="SF010_001378"
     CDS             complement(<1..166)
                     /locus_tag="SF010_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG8230295.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTR"
     gene            complement(168..575)
                     /locus_tag="SF010_001379"
     CDS             complement(168..575)
                     /locus_tag="SF010_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230296.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(575..1000)
                     /locus_tag="SF010_001380"
     CDS             complement(575..1000)
                     /locus_tag="SF010_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8230297.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(1000..1581)
                     /locus_tag="SF010_001381"
     CDS             complement(1000..1581)
                     /locus_tag="SF010_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG8230298.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1578..2321)
                     /locus_tag="SF010_001382"
     CDS             complement(1578..2321)
                     /locus_tag="SF010_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8230299.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDLNPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(2324..3286)
                     /gene="moaA"
                     /locus_tag="SF010_001383"
     CDS             complement(2324..3286)
                     /gene="moaA"
                     /locus_tag="SF010_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG8230300.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMINDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDILDSVLSGIDEVLNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(3299..3814)
                     /locus_tag="SF010_001384"
     CDS             complement(3299..3814)
                     /locus_tag="SF010_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230301.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3811..4308)
                     /locus_tag="SF010_001385"
     CDS             complement(3811..4308)
                     /locus_tag="SF010_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230302.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(4299..5183)
                     /locus_tag="SF010_001386"
     CDS             complement(4299..5183)
                     /locus_tag="SF010_001386"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG8230303.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            5254..6123
                     /gene="miaA"
                     /locus_tag="SF010_001387"
     CDS             5254..6123
                     /gene="miaA"
                     /locus_tag="SF010_001387"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG8230304.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIQTRTKEMLDNGLLDEAKILFSKFD
                     YKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(6109..6672)
                     /locus_tag="SF010_001388"
     CDS             complement(6109..6672)
                     /locus_tag="SF010_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG8230305.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         2404 a         1010 c          833 g         2439 t
ORIGIN      
        1 ttcttgttaa atttgtgatt gtatagttgt aaagaaaatt atcttgtaaa tttctaagat
       61 ttagctccga attttccttt actcttctta cttttaaatg gttaaagttt tcaccttgaa
      121 gttgtataaa ctcttctcca gcttgcttgt tatacaaaaa ttgcatttta tagatatctt
      181 tctattaaaa aaggcaaaaa caataaaaaa atttcaaaag gtaaaatcaa acaactaatc
      241 catctaaaag tggcatattt tctaaatctt cttgcttttt taaaacaaac aaagtgaaaa
      301 attgctaagg caaaaattaa gatccaagaa aaaatcatta cccagatatt gacattcatt
      361 tgaaattgtt tcattgctga taacaaacaa cctgtaaaaa taatcaaagc taaaaataaa
      421 taataaattg gtaaaaataa tcgtattctg cgaataaaaa tgaattcggt tttaaaattt
      481 ccttgtgtta gtataagata aaaaagcatt aaaaaaccgc tcgcataaag actataaaga
      541 tgtaaagcta aaaagaattc gtaactttga tccattattt tcctttgttt ataaaatcag
      601 ctaaattttg aatttgttca tcacttaaaa aactatggtt tttatctttt atcgttttta
      661 ttttttgtat aaaaatttta ttgctcaagg ttttaatggc cgtgctgttt ttaggtttta
      721 attccccttt ttctccatga caagtggcgc atttttgttt atataaagag ttgataatac
      781 taggattgac ttcatgttca tcatctgaac tttgtgcttc atcatctaca ggtaaaggca
      841 ggttggagtc acttaattct gttttttcat cgttttgttc tatttggact acttcttgat
      901 ctgtattttg agtcttggaa atattttttt catcattaga acaggcagat aaaactaata
      961 aaaaaaaact taaggcaatt aaaattttag ctttttgcat taaatctcct ttggatttat
     1021 aaaaatttct tcatttttta atttgttata aaaatctata tcattccatt ctgctttaat
     1081 gccattggaa aattctatgt cttgaagtga aatttttggc attagctcac tataggcatc
     1141 ttctctaaaa ccttgtgcat agcctgttct tgtttcatga acaatgatgc tttgtaaagt
     1201 cactccttgt tctccattta ccattttcgt ttgttttaat aaagcatcta taagtatgaa
     1261 aaatacacga caaaaatttt cagcacttac attaacaggc aggcaaatcc aacgacttga
     1321 atattttttc atttcttcta aatattttgc gtcatcatat ttaaaaagag tgatagcatg
     1381 atcaaaacta tcaataattt ggcgtatata ggtttttaaa agtccaaaat catagaccat
     1441 tccagcatta tctaaatatt tgctttcaag taaaacttca actttgtaag aatgtccatg
     1501 aatgctactt ttgcaacgct tagaagaaca aaatctaaca atgtgtgcgt tttcaaattc
     1561 aaataatttt cttataatca tacaccctct ttatcgttcc aaagacgaat atgaattcta
     1621 tcagaataat tataaccatt cttaatacaa aattcagcaa ttttttgagc atttttttta
     1681 aggttttgct cattttcacc cataggcata caaaaaattt gatttggagc ttcttttaga
     1741 atttcattga tttctaaaaa tgaattatca agagtattgg catctaaaac aaatttataa
     1801 aaactatctt ttgcgtaatt tttaaatgct tttaaagctt taaaatttaa tcgtttatct
     1861 ttttttatcc cactattttg gagtttaacg cttaaagcaa aaatacattc tttgtaaaaa
     1921 ggatatctat caaaatcaat ttctatgctt ccattgcttt caaagtgtat ttcgaattta
     1981 ttttttaata acatttggat aaattctata aattcaggat tttcataatg gattaatggt
     2041 tctccacctg tgataacaac tataggatta aggtcttgtt ttaattttat cactcttttt
     2101 aaaagttcat tagcatttaa agtttcataa ctttctttaa aatcttttgt gaaaacagct
     2161 cttatcgtgt cacatccaat gagagtttta tcgttttttg atatttttac attaaaacct
     2221 aaacagttga aattacaacc agcaaaacgc ataaaaatag ctaattttcc attatattta
     2281 ccttctcctt gaatgcttaa gaaactttca acaagttgca aaattaacct ccagtttgat
     2341 aaaaagcacg agatgaggtt tcattatcaa caacactcca tttatttttt tctggtttat
     2401 ttcttaatac ttcttgtaat atttctacag cggctttaat atcacctttt cgaaccgctt
     2461 cttttatgct taatgcttca tcaaaataaa gacaaggtat taacaagcct tcagcactta
     2521 agcgtatgcg attgcaagaa tcgcaaaatt catggctatg aggatctata attccaaatt
     2581 cataatcatc tgccttgtaa atactcacag gtgctttttc atcttttttt ataagttgaa
     2641 tttgatattt ttgactcaaa atttgtataa tttcatctct ttttaatcct tgtaatttac
     2701 cataagcatg agtattttcc ataaattcta taaagcgaat ttgagctttt tttgattttg
     2761 caaattccaa aagagatatc agttcatcat cgtttaaatt tttaagagct acagtattaa
     2821 gttttacttt caaatctaga tttaaaactt catcaattcc agataaaaca ctatctaata
     2881 tatctttttg cgcaagagtt tttgcttttt tgtgatctag ggtatcaagt gaaatattaa
     2941 gtcgtttaag tccagcattt tttaggtctt tagcaaagtc ttttagtaaa aatccatttg
     3001 tagttatagc aaggtcaata tcgcttttat aatcgttaat catttttata aaaatactta
     3061 aatcttttct taataaaggt tccccacctg ttatacggat tttttcaatt ccttcgtcta
     3121 tagctgcttt aacaaataaa aaaagttctt cgaagcttaa taaattttct tttggctgat
     3181 aatcgaaagg aatttttggc atacaataaa ggcagcgaaa gttacatctt tgtgtaactg
     3241 aaattctaag ataatttatc tttctaccga attgatctat aagcatttat tttccattct
     3301 attttattaa tttcttaaat tttaagacaa gttctacatt tccagtgcca atgcgtaaat
     3361 ctttagcgat ttgttctatg ctttttcctt ctttgaaaag attttctatt ttttgttctt
     3421 ctgtatcgta atttggtgta agtttagcca tgctttgtgc tttttgttcc aaatttaaaa
     3481 gacgattttg ttgttcattt tgaaaatctt ctatgatatg ttccatagtt tttagtgttc
     3541 ttaaaacagg agtgattttt gaactgattt gtttatcaag ttcaatcata atttcttctt
     3601 ttaaaagaga ggttttatag tcttcatcct cttcgctatc atctttaact cctaattctt
     3661 tacgaaaata atgaagttct ttggtaatat cttctatcac attttgaagt tttgctattt
     3721 ttgcattatt ttctctttct ttgatattca tgtaggctag cattgcaatt aaaagcacaa
     3781 ttataaaaac taaataaagt acatcatcac tcattcttgg cctttcttat ttcttatcat
     3841 atttctttgg atttcaacaa caaaagcatc aaaagccatt ttgtcttcag gcttaatttt
     3901 gataattttt gccaatgttt gactttgagc tttgataaaa atagctattt tttgattatt
     3961 taaatcaaat cttaaataat attctttatc ttcttctaaa atagtatcca aaaaatttag
     4021 atactcaaaa tttaaagatt ctattacccc tttttgctta agtggtataa gttctttatt
     4081 tttatctaaa gaattttcaa gccttaaaat atcttctttt agacttaaaa gaagatcaaa
     4141 aataattttt tcaccctcgt caaaatcaat gcgtaaagca agttttttcc attttaaaat
     4201 ttgagaaatt gctccaagtt ttaggtattc tccaagaaaa cggttatttt ctatttcaca
     4261 acattctaaa tgagcttcaa atcctgcttt aaaaagtgct aattccataa taaatcaatc
     4321 caaataaaaa taaaaaagat aatacttaaa taaccattta gagtaaaaaa tgctctatca
     4381 atatgagcaa aattcttgtg aacaatttta tgttccaagg ctaaaataat accgcttata
     4441 attaccccaa taagtgctat ttttccaagt gctacacccc aaacttccca cacaaaaaga
     4501 agccaaaata ataccgctaa aatatggcaa aaagctgata taaataaagt agcctttgaa
     4561 ccaaatttag caggaataga gtgaagtcct atttttttat catactccat atcttgtaaa
     4621 gaataaagca gatcaaaccc agctgtccaa aaagttacac ctaaacataa aataacgcta
     4681 taaatgtgaa tttcacccat aattataaca cttcctgcaa taggcgcaag tcctaaacaa
     4741 aatcctaaaa ctaaatgtgc taaagaacta aagcgcttaa aagctgaata aatagccaat
     4801 accaaaagca caggaaaaga caaataaaag gccaaagtat taataaaata agaacatgat
     4861 ataaaaataa gtgcattaat aatgataaaa atccatacgc tttttctacc tatttttcca
     4921 ctgacattag ggcgatttgc acaacgagga ttatccttat ctatatcttc atccattaaa
     4981 cgatttgtag ccatggcaaa atttcttgca cttaccgcac aaataatgcc taaaatcaac
     5041 gccttaaaac caaaccaagc agtgtcattt gcaagttttg atgctacaat catagaggaa
     5101 aataaaaaag gcaaagcaaa aatagaatgc ttaaatacta caagttctaa aatatcttta
     5161 aattttatcc agaatgtgtt catttttcta ctttaaaata ttttttgcta tgattttact
     5221 aaaattttta taaattttag gataaatatt aaaatgtttt ttgaaatagc attaatagga
     5281 acaaccgcga gtggaaaaac atacatagcc aatactttag caagagaatt taatgctgtt
     5341 gttttaagtc ttgatagtct ttgtgtttat aaagagatta atatagcaag tgccaagcct
     5401 tcacaagatg atcttgcgag tataaaatac tttggggtaa atttattgag cgtgaatgaa
     5461 cattttaatg ttgagttatt cataagagaa tatcaaaaag caaaagaatt tgctttagct
     5521 agaaatttac ctctaattat agtaggtgga actggatttt atttaaaaac tatgatagat
     5581 ggtttaagtg aaaaaacctt agagtcaaag agttctttaa ataacgatga aatttatgct
     5641 cttttattaa atattgatcc aaactataaa atagaaaaaa atgatactta tagattaaaa
     5701 aaatggctgg gtatttatga acaaacaaga gaaattccta gtgaattttt aaaaagaaca
     5761 caaaaaactg gggtgcttaa agatatagaa atttatgagc ttgcgtggga taaagaaatt
     5821 ttaaaaaaac gtattcaaac tagaacaaaa gaaatgcttg ataatggact tttagatgaa
     5881 gcaaaaattc ttttttctaa atttgattat aaacttaaag cattaaattc tataggtttg
     5941 aaagagtgta aagaatattt agatggagaa atttccttta aagagcttga aaatttaatc
     6001 acgatacata ctacacaact tgccaaaaga caaagaactt ttaataaaaa atttcaaagt
     6061 aaagccttgg aatttgataa agctttagct actttaagaa tgaaattttc aatcgaaaaa
     6121 taaatgttct attagaattt ttactcctag tataattaaa accaatccgc ctaaaagttc
     6181 agctttattt ttaagataaa ttccaaattt attccctatt tttagagcaa tgatacataa
     6241 aatgaaggtg ataataccta ttaaaaatat agctaataat agatttatat ttaaaaatgc
     6301 aaaactcaca ccaactgcta gtgcatcgat actcgtagca attgctaaag ctagcatggt
     6361 tttaaagcca aattgattgg cattactatc gcaattttca ttttccaatg actctttgat
     6421 catttttaat cctattaaag aaagtaaaat aaaagctatc caatgatcaa tactcgcaat
     6481 aaaagatgca aaagttatgc ctataaaata accaatagtt ggcatcaaag cttgaaatcc
     6541 gccaaaataa attccaacaa taagataatg ttttaaatgt agttttttaa cactaaaacc
     6601 tttgcatagt gatacagcaa aagcatccat tcctaaagca caggataaaa aaataagact
     6661 ataaaaatcc ataataaatc ctaaaa
//
LOCUS       DARGEX010000081         6496 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.081, whole genome shotgun sequence.
ACCESSION   DARGEX010000081 DARGEX010000000
VERSION     DARGEX010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6496
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.081"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            5..583
                     /locus_tag="SF010_001389"
     CDS             5..583
                     /locus_tag="SF010_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8230306.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            616..1512
                     /locus_tag="SF010_001390"
     CDS             616..1512
                     /locus_tag="SF010_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8230307.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(1509..2474)
                     /locus_tag="SF010_001391"
     CDS             complement(1509..2474)
                     /locus_tag="SF010_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG8230308.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(2455..3195)
                     /gene="pxpB"
                     /locus_tag="SF010_001392"
     CDS             complement(2455..3195)
                     /gene="pxpB"
                     /locus_tag="SF010_001392"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG8230309.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFEIQEQVAKKVYQKEIYEYKNH"
     gene            complement(3205..3972)
                     /locus_tag="SF010_001393"
     CDS             complement(3205..3972)
                     /locus_tag="SF010_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG8230310.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(4114..4923)
                     /locus_tag="SF010_001394"
     CDS             complement(4114..4923)
                     /locus_tag="SF010_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8230311.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            5002..5688
                     /locus_tag="SF010_001395"
     CDS             5002..5688
                     /locus_tag="SF010_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8230312.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKCFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            5690..>6496
                     /locus_tag="SF010_001396"
     CDS             5690..>6496
                     /locus_tag="SF010_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8230313.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKLNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYD"
BASE COUNT         2110 a         1024 c          938 g         2424 t
ORIGIN      
        1 aaaaatgaaa aatatactct tacttaatgg cgctaaagaa tttggaaatt caaaaggaca
       61 acttaatttg acattgcata atcatgcttt agaaatttta aaaacactag gatacgaggt
      121 agatcaaact cacatagatc aaggatatga tcctaaagaa gagatacaaa aatttataaa
      181 agctgatgct gtgatctatc aaatgccagc ttggtggatg ggggagcctt ggatagttaa
      241 aaaatatatc gatgaagtgt ttggtttggg tgctggagtg ctttttaaaa atgatggaag
      301 aactcatgaa aatcctagta aaaactacgg aaaaggtggt ttagatcatg gtaaaaaata
      361 catgttttct ctcacttgga atgcacctct tgaagccttt aatgataaaa atgaattttt
      421 tgaaggaaag ggtgtagata tggtgtattg gcatttgcat aaggctcatg aatttatagg
      481 tatgaaagct ttaccaactt ttatgtgtaa tgatgtggta aaaaatcctc aagtggaaaa
      541 atatctaaac gagtatgaac tacacttgaa aaaaattttt taaaaaattt gacttaaaaa
      601 tttcaaggtg taacattgac tcgaacaaag tatttgtata tcttgcttgt tattgctatg
      661 tttttatggg gctcatcttg gccaacatct aagattttag caaattatac ggatacttct
      721 attattacct tttggcgttt tttctttgtt gtattgggtt cattttttgt tttaaacttc
      781 ttaaaaattc ctcttaaaat cgaaaaaact gccttaaaat gggtattgat agcaggagtt
      841 ttaaatgggc tttatgcctt tgtatttttt atcgctataa agcacggctt ggcaggcaaa
      901 ggaggagttt tagtaaccac tatgattcct attttttctt atttgatatt tatgatagcg
      961 atattttttc aaaaaaacaa aaaatcaact cacaagatca caaagagtga aattctaggc
     1021 ttatttttag gtttattatc tggattttgt ttgctaaatt tagggagttt agaagattta
     1081 tttggtaaat ttaatatttt atttttaact tgttctttta tttgggcttt gatggcagtg
     1141 tttaatcata aagccaaagg agctcaccct ttggcgatta acttttatat taatctcatt
     1201 tctattttaa tgttttcttg gatattgttt gatgtaaaaa gttatgaaat ttttcatttt
     1261 gaatttaaat tttggatcag tatgtttgtc gtggcttttt tatcaactat tataggaact
     1321 agtatttatt attatgggat tcacatttta ggaagcgtta aggcaaattc ttttgtttta
     1381 atcactcctg ctagtgcttt aatttgcagt tattttatac tagacgaggt gccaaatgca
     1441 cttaccttgt taggttgtgc cttggctata ggtgctatat attttatcaa tatttatggt
     1501 aaaaaagctt agattaaatt ttcaaaatca agattgattt tttgatccat agctttaaat
     1561 ttcatttctc tttgtttata aagttctaag gcttcttgca tgctaatgct ttgaaattta
     1621 aagctagaac ctaacttagc ttgtgcgagt aagcttagat cattttctat aaccgtggct
     1681 atttttgtat agcctcctgt gctttgtctt cctgccatta aaatgatagg aataccactt
     1741 tttggcactt gtatacttcc aaaaaccgca ggatctgaga tgatatctgc tgagttttta
     1801 tgctctatac tttcactaga ttctgcataa attgccattc tatcgctttt taaacctact
     1861 ttataagtag tatttaaaaa ggtttctatg cctttttggg taaaagcatc ttcatttgtt
     1921 cctaaaataa cgcgtataat aggttcttta gggcttttaa aaagaggatt ttcacattct
     1981 ctagcttcta aattaaaagg tataaaagta ttatgagtat ttaaaatatc atctttttgc
     2041 aaagctcttc cttcaaaaac tccagctccc attttagcat cactggattt agagtttaaa
     2101 aaacttttta cttcaaagcc acccgctacg cataaatacc cacgaaaacc tatttttgct
     2161 aaatcaagtt ctaaaatatc gcctttattt gcttgatata ctttgcaagt tttgattttt
     2221 tgattatcaa gctttgcctc aaattcagct ccacttaaaa caaaataatt ctcatctaaa
     2281 aattcgtatt ttccaccctt taaacaaagc tcaattcctg cttcatcttg tttgtttcca
     2341 agcaagatat ttgccattct taaagcatct tcatccatag ctccacttct tgctatgcca
     2401 aatttagcaa atttttttct accaaagtct tgcaaacttg aatttataga tgcttcaatg
     2461 atttttatac tcataaattt ccttttgata gactttttta gcaacttgct cttggatctc
     2521 aaaaaattca tcttttgaaa tggctttaaa ttttaaaaac atacccgctt ttaaaagagt
     2581 gggatttttt tcatcttctt tatcaaaaaa ttccaaaggt gttctagcaa tgatttgcca
     2641 accccctgga cttgatatgg gataaactcc tgtttgttta tcggctatac ctacacttcc
     2701 agcttctatt tttgctctag ggcttgaaag gcgtggggta aaaagtcttt catctaaacc
     2761 tccaagataa ggaaaacctg ccataaaacc tagcataaaa acaagataat aaggtttagt
     2821 gtgaagagat ataagctctt cttttgaaat ttgattgtgt ttgcacacaa attctaaatc
     2881 cagtccaaat tcttcatcat aacaaagtgg aacttctata caaagacttg agttttgttc
     2941 tgcaagttta atatcctttt taattttttc caaaaaatca agcaaggaat ttaaagaaag
     3001 cacgcaagga ttaaaatata taagcaagct tgcataagca cttaccaact catcaatccc
     3061 ataaatttca ccttctttta gggctttttg tatcctttgt tctgtgctta aaacataggc
     3121 attgatttga ggtgaaattt cttgctcaaa acgcaaaagc aaagctttac ttccactaaa
     3181 atgcacacta aacattgcta aaacttatat aaaattttcc aaagcacaaa tttgaatttg
     3241 ctcttttttt aaattttctt tgattttttt aacaaattct aaagcttttg cattatcccc
     3301 atgaacacaa atactatcgg cttttaaatc aatttctttg ccatttatgc ttgtaacttt
     3361 gctttctttt atcattttta tcacgcgttt gatagctaaa ttttcatcgt gtattaacgc
     3421 cccttctaat tttcttgaaa ctaaagtgcc atcatcatta taggcacgat ctgcaaaaac
     3481 ttcattagca tatcttaaac cctttttctt agctgcttca ttcatagcag aattactaag
     3541 ccctagaaaa ataatatttt catcaaaact cgccactgcc tcacaaagtg ctaaggctaa
     3601 attttcatca atagctgcca tattataaag cgccccatgg gctttaaaat gctgtatttt
     3661 catacctttt gccttagcaa agccaaataa agctcctagt tgatacaagg catagttttt
     3721 agcctcttca aagcttattt gcatattgcg tcttccaaaa cccaaaagat caggataaga
     3781 tggatgtgct cctatgcaaa caccattttg cttggctaaa tttaaggttt catccatcac
     3841 acaaggatca cccgcatgaa agccacaagc gacatttact gaacttacaa attttaaaat
     3901 ttcttcatcc attcccattt tataggcgcc aaaactttcc cctaaatcac tatttaaatc
     3961 cactttgaac attatttgac cttgtatatt taattattga ttttattata tctaaagaag
     4021 aattttaaat aagctaaaag ttttgaaaaa taaataaaaa agttacaata agtaaaaaat
     4081 gatattttaa gcaggttaaa acctgcttaa tttttagtct tttcttgttt ttgcatcaat
     4141 tacaaataaa ggtttattaa gaagtttaaa atcagcaatg aaatttaaag tcttatcact
     4201 tgttacccat ttgataaatt tactagcttc tgtataattt acatttttac aatgcttagg
     4261 atttgtcgct ataacagaat aaaaattttt aagactatca tcgccttcat ttacaatgac
     4321 taagtttggt ttgccttttt cattggcttc atatttgata taagtaccac gatcggttaa
     4381 aatcacacct tttttttctt cagcaatttt aatgcttgct aacatacctt gtccgctttg
     4441 ttgataccag ctttgctttt caggaacacc gccaagattt ttccaaaggc ttttttcttt
     4501 attgtcagtg cctgatttat cgcctcttga gatgaaagta agcttttcat ttttgataag
     4561 ttctaagctt tcttttaaat ttttaccttt aaatttagaa gctaaagatt tatctgcgat
     4621 gatgataaaa tcattataca tcacaggagt tctatctaca ccaaagcctt ttttcataaa
     4681 ttctttttca gcctttggag aatgcacaaa aagcacatca gcattgcaat cttcacccat
     4741 ttttaaagcc gcacctgttc ctacggcaac ccattttaag gtattgccac tttctttttc
     4801 ataaagaggt tttagagcat ctaaaagtcc tgtattgtca gtgcttgttg tagttgccat
     4861 tttaagttct gctgcacttg cacttaaagc taaagcaagg gctaaagaaa tgattttttt
     4921 catttttttt ccttataaat ttacataaaa aaatatttta gcataattat gctaaaatta
     4981 cttattttaa aaaggatatt tttggattat atttttgatg gttttaaaca ggctttattt
     5041 ttacttttca atgctgatga aagcgtaatt tcagctataa aaactacact tttaagctca
     5101 agtatttcta tagttttagc tttgcttata ggttttcctt tgggatttat cttaggtttt
     5161 tttgatttta aattcaaatg ctttataaaa cttatcatag atactagcct ttcttttcca
     5221 acagttgcag taggacttat actttatgca ctgatttcaa gtcgaggacc tttgggagaa
     5281 tttggactac tttttactat aaaggcttta attttagggc agtttatctt agcacttcct
     5341 atagtgatcg cacttttttc aaatttgata gaaaatatga ataaaaaaca ttttttactt
     5401 ataaaatctt ttcacctaag tcctttaaaa cttgttttaa cgatgattta tgaattacgc
     5461 tttgctttga ttagcgtcgt tgcactagct tatggacgca ttgtagcaga agtaggggta
     5521 gcgatgatag taggtggaaa tatcaaatac gacactagaa ccataaccac agctatttca
     5581 cttgaaacta acaaaggcga atttgctagc ggtatagctt tggctttggt tttaattctc
     5641 attgcctttt gtttaaattt catcacacac aaactcaaaa gaacataaaa tgatagaaat
     5701 ttctaatctt tttttcaact atcaaaacaa agaagtttta aaaatcaaaa atttaaaact
     5761 tgatacgagt aaaattagca tcttaatggg agcgaatgga agtggaaaat ctacattttt
     5821 aagaatatta aaatttttag aaggagattt ttcaaaaaat atttcttatt ttggaaattt
     5881 taaacttaat aataaacaaa agcgtgaaat ttatttgctt tttccagagc ctattttgtt
     5941 aaatcgtagt gtaagggcaa attttttatt taccttaaaa acttatggga ttaaagaaga
     6001 tattgaagaa cgcataaaag aaagtttgat gtttttaaat ttagatgaaa gtcttttaag
     6061 taaacatcct aatgaacttt catcaggaca aagtcaaaaa atagcttttg ctatagcttt
     6121 aagcgtaaga gcgaagtatt atttacttga tgaaccaagt gcttttttgg ataaaaatac
     6181 tacactttta tttaaaaaag ctattcttaa aatgcatgaa aatttcaata caggtttttt
     6241 aatcgcaagt catgataaac attttttaga ttctttggcg caaaaaaaac tttatttgca
     6301 cagtggagaa attttagaat ttgaaaatac taatgttttt gaactagaaa atcaaggtgt
     6361 gaaattttgt aattttatag attttagtaa ttgtaaaaaa tataaagatt ttaaaaaacc
     6421 tccaagtaaa attgctattg atccttataa aatttctttt tttaattcta aaaatattcc
     6481 aaaaaataat tatgat
//
LOCUS       DARGEX010000082         6426 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.082, whole genome shotgun sequence.
ACCESSION   DARGEX010000082 DARGEX010000000
VERSION     DARGEX010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6426
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.082"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..469
                     /locus_tag="SF010_001397"
     CDS             <1..469
                     /locus_tag="SF010_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG8230314.1"
                     /translation="LFSVLIFTLVVVFIQNYIAQNSSFEGKVVRIIDGDTIEVNHENK
                     LARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEIIYKNKDTYGRIVAIVKLNDVD
                     INRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKESNPIEPYKWRKHNKF"
     gene            478..651
                     /locus_tag="SF010_001398"
     CDS             478..651
                     /locus_tag="SF010_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230315.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(652..1230)
                     /locus_tag="SF010_001399"
     CDS             complement(652..1230)
                     /locus_tag="SF010_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230316.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1303..2193)
                     /gene="cmoB"
                     /locus_tag="SF010_001400"
     CDS             complement(1303..2193)
                     /gene="cmoB"
                     /locus_tag="SF010_001400"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG8230317.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(2276..4001)
                     /locus_tag="SF010_001401"
                     /pseudo
     CDS             complement(2276..4001)
                     /locus_tag="SF010_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(4059..4199)
                     /locus_tag="SF010_001402"
                     /pseudo
     CDS             complement(4059..4199)
                     /locus_tag="SF010_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4464..4788)
                     /locus_tag="SF010_001403"
                     /pseudo
     CDS             complement(4464..4788)
                     /locus_tag="SF010_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4790..5320)
                     /locus_tag="SF010_001404"
     CDS             complement(4790..5320)
                     /locus_tag="SF010_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="HEG8230318.1"
                     /translation="MVGKYVTEYDSNNNHGRYFFTSTIEKPAYLYVYSPNDFFTSLAV
                     NGPSMTGATKSLVGTGAIKNRENYKETSDLITKDNISNEVLNSIFNDLKFNSSVDISD
                     LSKFYKNGKILTADELTSINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGDLGK
                     ANQVIIKTKEILSQNS"
     gene            complement(5441..5780)
                     /locus_tag="SF010_001405"
                     /pseudo
     CDS             complement(5441..5780)
                     /locus_tag="SF010_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872973.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutination protein"
     gene            complement(6143..6426)
                     /locus_tag="SF010_001406"
                     /pseudo
     CDS             complement(6143..6426)
                     /locus_tag="SF010_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2045 a          998 c          928 g         2455 t
ORIGIN      
        1 acttttttct gtattaatct tcactcttgt agttgttttt atccagaact atattgccca
       61 aaattctagt tttgaaggaa aagtagttag aattattgat ggagatacta tagaagttaa
      121 tcatgaaaac aaactcgcta gaataagatt ttttggtata gatgcaccag aacttaaaca
      181 aagttttgga aagcagtcaa aagaagcttt aagtagaatt ttaagtggca aacaagttga
      241 aattatttat aaaaataaag atacttatgg tagaattgtt gctattgtaa agcttaatga
      301 tgttgatatt aatcgatttt tggtaagcaa aggctatgct tgggctgata cttactatag
      361 taacgcttat accaaagaac aagaaaatgc taagaaaaat catttaggtc tttggaaaga
      421 gagtaatcct atagagcctt ataaatggag aaaacacaat aaattctaag gaaaaacatg
      481 aaaaaatata ctttaatggt gctattagct ttaggaattt ctggatgttt tgtaaatgaa
      541 agagggattt caaatcgttt ttatgatgat tgtaaagagt attatgatgg aagtggaact
      601 tatcataagg attgcccaaa aaattgggta gatattaaaa tgactccttg attattttcc
      661 acccacagag gccattaatg cagctgctac agcttctgga ttgttgattt tggcaccttg
      721 ttcttgattt tctgtaggtt taacagtgtt aagtggcgga cgcttgagtt taaatatatg
      781 ctcatcggtg ctaacaactt gtatcgttcc ttcaaacatt ttaacttctt taacatgtcc
      841 aaccactttt acatctcttt ttttggaggt ttcgtcaaaa agtgcatgag cttcaagttc
      901 taaaacatcg cctaatttaa gcggagcata aaaaaaacat tttgatccaa taatcactga
      961 aaattcttta ttgatagagg cttgtgctac atagtttgcc gcagcgaaaa taaaggcatc
     1021 aaaaatcaat ccttgatcat ctgctaccat ttcgcttgtg gttattaaaa ttgatttggc
     1081 atagttttta tcaatttcta taatggttcc agcaagagag gtgtttaatt caggacaagt
     1141 gagtaattct gctctaacgc gagatatatc ttctgcagat gcgtattctt caagttgtgc
     1201 atattcttca aaattatctt tttttgccat atctaacctt taaattctac ttatctactt
     1261 caaaatatct aattttcaat atcggtaaaa aataaaaaga atttatattt taatgcgtat
     1321 ataaactctt ttgggtgctt catagccttc aatggtaaga tttttatcct ttggatctaa
     1381 gaaattttcc agcgaaaaag agtctatcca ttctgttttt ctttgttcgt tttcatcggt
     1441 tttttttgta gctaaaactt caaattcttt aaatcctgct ctttcacacc agttttttaa
     1501 tgcactaatg cttggtacaa aataaatatt tggaatttta gaataagttt tattaggcac
     1561 aagagcgatt tctctctcat cttctatata catggtatct aaaaaaacaa ctccattttt
     1621 attaagtcct gcttttaaat cttttagcat ttttatagga tcacttctat gataaatcac
     1681 cccaagacag aaaatcacat caaatttcaa gccatagctt ggaagatctt ctacgcctaa
     1741 aagttcgtat tttataggag ttttagctaa agcgttaatg agttcaaatt gcaaacggta
     1801 tttgatagaa ggatcaaaac ctatgagttt tgcaggatta aattcaagca ttttaaacat
     1861 ataataacca ttattacagc ctatatcagc aacgcatttt tgagaaattt cgttcatgaa
     1921 aggctttaga atgttgaatt taataaaact ttgccattct gtatcgatga aaagatcgtc
     1981 tattttaaaa ggaccttttc tccatggttt aagttctttt gctatagcta agatttcatc
     2041 tttggcttga gaatttgtag ataaatttac actatcatct aaagaaaaat tacaagcaag
     2101 attgagagct ttaagttctt gaattttagc gtataaaggg tgatttagaa attgtttttc
     2161 aagtaaattt tcttgcattt ttatccttga catttgcttt taatgctaaa ttataacatt
     2221 aaaagctttt atggcaatat aaattatatg cattaaatat ttgatcaaaa ataactcaaa
     2281 aatactttct aaagattaca taagctttag aactataatc atcatctagt ttatatttct
     2341 ttaaagctct agctaaatca agcttgacat aaaaattccc tgttttatta taaagcagtt
     2401 gtaaaccata agcatccata tagtttgttt cacttgctct atatagttta gaatcattct
     2461 cataccaaga ataacctata tcataaaaag gagtgatata aaaatctttt aaaggagtag
     2521 ccattctaag tccaaagcta gccactacag cattatctcc ttctccatct ccattattat
     2581 aagcccttac tccataagga tctcctaaag atatagtttc actactatct aatgtagctc
     2641 cattgacaac ttgttgataa tttaaactaa aaagatgagt aaaagtatca ttaaagaaat
     2701 aagcattgtt aagattgaca ttgagtttag caaattttcc aaagccatct ccatctgttt
     2761 tagaactcat tcctaatata gtagttcccc catctttaac attaccatag cttacattag
     2821 cactataaga aaaactatca ttactaatgc cattataaac tccttctata ccaaagctta
     2881 tcgtatcaga gcttttatct atagtcatga tatttaatct tgaattacta agctttttat
     2941 gataataact tgaagttaaa taaaaagaat tataagtcgt aatccccaaa ggatatttta
     3001 aatctatacc tagattttca gaagttccta taaagtttgc atttttataa gctcctccta
     3061 aagcatagtt tcttttagaa taacttggag tgatttttaa attccctaag aaagtagtat
     3121 agcttatacc atagttagtt tgtgcttcat cgcttctttg caaataagca ttaagactat
     3181 ctccttgatg agctatgtta ttaaaactca tactagcacc acccctatta tctgcctgat
     3241 tcttttatac cgtaattatc cccataaaac aatacagaaa cgaagctatc actaggggta
     3301 gtttctatca ctatatctgt gtcacctgga ttatctcctg cttttaaaga agcaagagtt
     3361 tgtatcccat acatttcatt gactttataa accgcatctt ctactaattt agtagtgatg
     3421 atttcacctt tatgattagg taatttgctt tctatagcat aatctcttac actagaattg
     3481 ttttgaacca catatttacc taaaacacct aaggtgatat tgatttgaat ttgatctttt
     3541 agttcttgtt gtgggatata agctgtagca gcaggataac cactagcttg aacataataa
     3601 gaaataatat tggctatatc ttgtaagtct tgaactgaaa tactttcttt tttgtaatcg
     3661 tttaaggctt cttgtaaaac ttgctcatct aaacctagat ctttaaagtt tatgttttta
     3721 ttggtaatat gaaagttaaa gctaacttta tgaattgatt cttctttaga agtatttttt
     3781 aaagaaggag tgtttgaatt tggggtttta gtttttaaag tattatcatt agacaagtta
     3841 ggttgatttt tttgagtgtt tttctttgtg ttagtggttt ttgaattatt attatcacta
     3901 gtattagaat gatctatgat aatcactcca tcttttactt ttaaagtgtt attgtagttt
     3961 tttaagttag catcttcttt ataaggagat tgttctaaca tttgtatggt tttttattat
     4021 ctttaatatc actagcataa aggcttaaga tagctaaact agatagtaag ataatgcgtt
     4081 tcatttaaat tttccttagt gtttgtttga tttttaatct ttaaactttg tttgttttat
     4141 taatttttaa caagatccaa aaggctttta accttttgga ttttaatcat cttgagcaag
     4201 ggtttcctgc tttaaaatta tccgatacta tacaacatta ccactttctt gagtgctggc
     4261 ttcatctata cttgcttgtt tatcatcttc attgatattt ggatcttcat ctgtagtttg
     4321 cataagcaaa gctgtagtaa tgtcaggttc ttgttgtcct atggtatcat ttgggttatt
     4381 attagaaccg ttgttgttac cattgttaat atcacctgaa tcggttccat cgtttccgtt
     4441 gttggagttg ttggatcctg aatttataat ggatactggc ttatagtttg cactatattt
     4501 tccattgact gtaagatgac tagttccatt tatgctcgca cttgctaaag ttttattaga
     4561 attttctaaa ctagaattag tactcgctgt agcgatttga agagctattg tagcttgtta
     4621 taaatcacta gaaactttat ctacagcttg ttttaaacct gcaataactt tatcgccatt
     4681 attacctgtt ataccactta gagctgtatt gtaagcttta actgcttcat tataagcatt
     4741 tacagcagta tcgtaagttt tttgagcgtt ttcttgccct tcggtcattt taggaatttt
     4801 gagaaagaat ttcctttgtt ttaataatga cttgattagc ttttcctaga tcaccataag
     4861 aatttcccaa tacttccttt aaagcgtttg caaatgttgc attattacta tcttgagttt
     4921 gtccatataa agcagtaata aaatccatac tttgattaat gcttgttaat tcatcagctg
     4981 ttaatatttt tccattttta taaaatttac ttaagtcgct aatatcaaca ctagaattaa
     5041 atttcaagtc attaaatata gaatttaaaa cttcatttga gatgttatct ttagtaataa
     5101 gatcgctagt ttctttatag ttttcacgat tttttatcgc tcctgttcca actaaagatt
     5161 ttgtagcacc tgtcatagat ggtccattta ctgctaaaga tgtaaaaaaa tcattagggc
     5221 tgtaaacata caaataagcc ggtttttcta ttgtgcttgt aaaaaaatat ctaccatgat
     5281 tattattaga atcatattcc gtaacatatt ttcccaccat agcaatccct tctcgtactg
     5341 tcatagtttc taaatttata acatttcctg cattggattt aattacaggt gatattgttt
     5401 taggatctcc ttcaaatgct gaaggttttc catcttttac aaactccttc atccccttat
     5461 cctctattga tgaagcagac agaataattt tttttgcatt aatacttcca ccattgagtg
     5521 ttccatctat aatgagagct tttagaacca taggcaatat ttaaataatt ttggttagtt
     5581 tttccttgtc caaaatttac agtttcacca cttgctatat taaaaccacc accccattgg
     5641 ataacagagt ttgttttact tcctgagata ttcatagtgc caccactaac acttatactt
     5701 ccacttgttc catgagtgaa cttaccccca cttggtaaag catagctttg tgtaaaaaga
     5761 aagaacctac aactaaagat aaagaaagtt tatttaactt tttcatgact tgctcctttt
     5821 tgtaagatta agatttaaga atcttttgtt tatatttata aaaatacaaa taaatcattc
     5881 ctatctttaa gataggaatg atttatttta tccttgcgta aatgcttttg ccatcttgag
     5941 atattcttgc ttcataagaa agcttttata aattcatatt ttttaatcta tctatagaac
     6001 ttagtttaaa atcttctttg tttttttgca ttttttcaat aaagctttga agttcttctt
     6061 gatttaaagt attagagttt tcatctataa aaccttgctc actttgtaag attaagattt
     6121 ctttattttt aaggtagggg tattactctt tgagggtata aagagccaat actccctcgc
     6181 tagaaatatt aataggagca tcgtatgact tcaaaaaggg gagttgtgtt gattttattg
     6241 gatacaataa gataataatg ctcaaagtta ttaataattc tagcttcaac tttagtattt
     6301 aaaatcagtc tattgttttt acttaaactg atatctgaag gagctatagc attagaagta
     6361 ctataattat cttcataatg tactaaggct cctgctaata tatctatgaa agtgttttta
     6421 aatata
//
LOCUS       DARGEX010000083         6324 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.083, whole genome shotgun sequence.
ACCESSION   DARGEX010000083 DARGEX010000000
VERSION     DARGEX010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6324
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.083"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(38..1716)
                     /locus_tag="SF010_001407"
                     /pseudo
     CDS             complement(38..1716)
                     /locus_tag="SF010_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(1726..2763)
                     /locus_tag="SF010_001408"
                     /pseudo
     CDS             complement(1726..2763)
                     /locus_tag="SF010_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2768..4363)
                     /locus_tag="SF010_001409"
                     /pseudo
     CDS             complement(2768..4363)
                     /locus_tag="SF010_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873680.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(4375..6303)
                     /locus_tag="SF010_001410"
     CDS             complement(4375..6303)
                     /locus_tag="SF010_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230319.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINTKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
BASE COUNT         1996 a         1121 c          740 g         2467 t
ORIGIN      
        1 aaaaatgggg gggggggaat ttccaatcac cccaaagtta aaagtatttt cctaggcttg
       61 cataaactct tgctcgatgt tctccatcgt gtttaagccg ataaacagct cttgcagcat
      121 ccatttttac ataaaaatta gcacttcttg tatagagtat ttgtataccc attgcatcca
      181 taagataatg attttcactt tgatattttt tattttcata ccaagaatac cctatatcat
      241 aaaaaggagt cgagtaaagc ccttctaaag gtgtttgaaa tcttattccc aaggtgccag
      301 aaacaacatt atccgcactt ccctcacctt ccaaacaaac acatacacca caaggtctac
      361 ctaaagatac ggattcacta ctatctaaaa cagtatcgct gataactttt tgataattga
      421 gttgaaaaat gtgagttaag cgttcttaga attgatattt gttgcttaaa tttaaattca
      481 tttttccaaa atttcctaaa tttactccat taaatccaga aaaatcacca tcattttcaa
      541 cattaccata tataaaattt aaagtataac ttaggacatt attctccaaa cctctataag
      601 ttctttctat gcccaaattt acactatttc tcgctttttc attgcttact aaaccatcaa
      661 gataataatc tttaatcttt ttatgagtaa aacccgaaac aagatataaa gaatactcag
      721 tatataaaaa cacaggataa gaaaaattta ctccaacatt catagagtcc ctataaaaac
      781 taagatttct ataaattctg ccaggaatat aatgtccttg agttgcaaat ggagtaattt
      841 ttaaattccc tataaaagta ctataattaa tcccataatc tgtttgattt ttatcactat
      901 cttgaagata aaaatttaag ttatcccctt atcttgctat attgtttaaa ctttgactca
      961 ttcctgctct aaaacgacct gtttctttag tcccatagtt gttagaatat aaagttaaag
     1021 ttgcactatc tcacctttct ttacttctat aataacatca ctttctccac aaccatcacc
     1081 tgattgtaaa ttagcattgg tttggattcc gtatatttca ttgattttat aaatttcatt
     1141 ttccacattt ttagttgtga taactttccc tttaagattt ttgttcaatt tactctctaa
     1201 agcataatct ctgacacctg agttgttttt aatgattact tttcctaaaa gttccaaaag
     1261 ctatgttaat ttgcactttg ttagaactta aatcttgcgg tggtatataa gcagttgccg
     1321 aaggatgact acttaattga caataataag ctataatgtt tgttatatct tttaaatttt
     1381 gtaagcttaa ttcttggttg cgatattcag ctattgcatc ttgaatttat ttttcgctaa
     1441 ttcttaattt tttaaatgtc aaatctttat tatcgatatg caaaacatac tctcttacaa
     1501 aaaccttagc ttcattttga tcagtttgta aatttgcaat atttgtagta ttttgctctt
     1561 taaaatttac agggcttttt tgatttttta atgtattttt taatttttat tttgtggtcc
     1621 atttgcttca gaagagcttt ctataagctc tcttatttta ttattattta gctcttcagc
     1681 atgtgaaaat acttgcaata agattaaatt tctcattttt atttcctatt ttacatttac
     1741 acaaatgttc attgtcttaa aattatcact tacaatacaa cgcaaaccac tacttctagc
     1801 atctgctttt cctatgtcca cttgatcatc atcttctttt tttgtgtcta ctttagtttg
     1861 aatttttata ggagcttcta caaccttttc aggaatttca ggcggcaata cagaaggttt
     1921 gtctggatct tcaccccctc cctctttttt tgtttatctg gctcatagat agatatattt
     1981 gatttttctg gcaatgaggc taattttcct tcaaaattat attttccagt gtacacttta
     2041 ccatctacat cgcttccatt tatagcaaaa ccttgagaat ttagaatctc attttcaagc
     2101 ttatagtgaa atccttcatt tccactaaga tccgcaaact gcttttcaag agcttctttt
     2161 tgttctaaaa gttttgcata cataactcta agcgtttcat cgctaactaa gcctgattct
     2221 ttgatttttt catagttttt attttctttg tcaagttgag ctaaggcttc ttggtatttt
     2281 tgtaattctt ctttaaaact agcgaaacaa cctttgccgg ttttgatttt atccatagca
     2341 gttttctttt gcgtccattt ttcataaaga ttggtataat ttttataact ttgttcttgc
     2401 gaaccttgcc ataactttaa aaattcttgt tctactccag tatctttaaa tgtatttaag
     2461 aaatttaaac tttgagtgat ctcactggct tcattttccc ctgccacacc cttgctatct
     2521 gcgtaaatcc aagttttggt atcaaaacca taagtgtatt ttccattcat caaatcatct
     2581 aaaattcttt gaagcaattt agggtcaaag tcgtctttgg ataatttcac agcatctgtt
     2641 accttggtaa aagaatcagc aaaagcataa gaattattat caagatattt tatatcgtta
     2701 aatttctttc ttacagcact atcaaaatct tttttttcct gttacttcac tattatattg
     2761 cacagactta aaaaaaattc tgtccttcat caatgtaacc attttctaaa ttatgataaa
     2821 cataaatatt actaaaatta ttatttacac taattccagg atcaccaata acttttccag
     2881 cttgtgtttt ataatttcca gcactcaaaa ttgctccatt tttataaaat aagtaagcat
     2941 tattaatctt taaatttcca acttttccag taaatcctcc tgttttacta tcattcccag
     3001 aagttataag tttttctatg tcattaacca caacattatt aaaattacca ccatcaattt
     3061 gtctgcctat gccacccaca taagaacctt cttttgttac tatacttata ttattaataa
     3121 caacatttgt aaaattgata gtgttattcc ctccactacc atttccccag cctattattc
     3181 cgccaacttt agtatttaca gctgtattaa taacgagatc attaacagtc acattttcaa
     3241 aacccgtata actgtttgca atattttgcc ctactatacc tccaacataa gcatcataac
     3301 cagttgaagc aattttcaat ccttgaatat taaggtttct tatatagcta ttttgaacaa
     3361 ctccaaaaat tcctacatat tgatttgatg aattaatatt aacatttttt aaagcataac
     3421 cagaaccatc gaaagattta gcaaaagcat tgcttgtatt atcacctact atgtatgttt
     3481 tcacgccact aaaatcaata tcatcaatca aacgaaaatg atcaaaagct gttctaaatt
     3541 tttctttatt tacattccaa aaatcagcaa atttattcca ttctgttgga tccgcaatac
     3601 ttccatattt agtccagttt ttaactttac tactatcatc aaaactaaat ttactactag
     3661 aattacccaa taaagctcca ttttcttcaa aacttgttat gctttgttga atgatagctt
     3721 cttgctctgc tttggctacg atattttttg tatcttttac cactccagca tcaacataaa
     3781 ctttgttacc ttcaagtttt aatacatcca aagtaatttt tcctttattg atttcaacct
     3841 tatttcctat taaaacaata ttatctgcat tgatctttcc aagatttata atatttcctt
     3901 gcttgcttac atcaaatact ggagaaaaat tcatcccttg agaaataaaa ttttggacat
     3961 ctgaatcttt taaaggtgtt gtgctagcta caaattttcc cgcagtgata gttcctgttt
     4021 tgccaatcaa aactcccatg ggattaacta aaaagatgtt attggtgccg ccatctagtt
     4081 ttccatctat cttagaagca tctttttgat aagcaatgtt taggtagttt tattgatttc
     4141 cgttaaattt tacagtttca ttttgtccta tattaaaacc accaccccat tgaataacag
     4201 agtttttatt gtttcctatg acattcatcg tgccattgct tgaacttata cttcctgttg
     4261 aaccatgagt gaatttacct ccttgtggca aagcataagc ttgagaaaag agcaaagaac
     4321 tcaccgcaaa tgataaaact atatgtttac tcatcttttt catgttactc tcctttaaag
     4381 tatgttgata taaattattt ttgcatcatc tgaaacttca aagctaaaat ttacattttt
     4441 caatgtactt ttagccaact tttctatctt gttgtaatta aatttatttt tattattttt
     4501 cattttttct aacaaatttt ctaattcttg ttgatttaac aatctattgt caccatcata
     4561 aattccaaca tcactttgta tgagaatata ttttcctttt gttggtttat ttttagtaag
     4621 aatttccata cttccatttg aaggaagatt tataagtttt tctatagtca agataggatt
     4681 ttttatttta tttggtaaaa taaaagtaaa attttcaaag ttatttacca cttctgattt
     4741 gacatcttga gtatctataa tcaaacgatt atttttagaa aaatcttctt gatgcggtag
     4801 aatttgagtg attattttgc cttttttatt tacttcatga aaaacagaac cagaaagcaa
     4861 atcgatattt acatctttaa agaaatttaa ctctccacct aaatataaag tattgttata
     4921 agatttaaaa tttgaaatat ccgaagttcc agatggagct aaaaatatag catcttgatt
     4981 tttatactca tctatattta aattaacaag ctccatgata ttatcatgag aatttgcaga
     5041 cactccagct atcaacccca cataaccttg tcttttatct gaggcagtac taaaaactgt
     5101 gttgttgatg atgattttat taaaagcact ttctttgtct gcttttatga tgcacgaact
     5161 ttccacggca gccgaagaac aatctttaag ctttataaga ttgttgtttg cattttgagt
     5221 tgcttttaaa ataatttttg agccctttcc taaagaactc gcttcggtta aactctgaat
     5281 gagattataa tttattttat tatttgaaac atttttagta ttgatcatca aacttaaatt
     5341 tttagatgat ttaatatttt caaaatttac ttcattattg tttgattcat cagcgatata
     5401 gtctatacca tctagcgtag tttcacttgt aataaaagca tataaaggca atgaaataac
     5461 agaatctttt atacttaagg tattattatt tgcttttcca cttaaagttc tagctgcata
     5521 tacagtaaat ttatcagaat aattttgtgg aactttttca taggttaaat cattttgtat
     5581 atcaataata ttaaaattcg caccctccgt agcaaaacct ccgtaaagat tgtaataatt
     5641 ttttccataa aaattatcac tgatttttaa aggtttttta agacgaaata caattttatt
     5701 tccattagct tcaccatcgt tagaataccc accatagagg tttaacgatg catgtgtttt
     5761 aatgttttta tcaagatgat ctaatgagtt aaaatgataa acttctatag aatttttctc
     5821 tgcattaccc tgtaatgttc ttccgccata aatttctcca aataaaacag catcataaaa
     5881 agttatttta ttttgcgaat ttaccattaa atctaaattt aaatttttaa ttattacgga
     5941 atttttactt acattgtatt ttttaagatt atttacatca gctaaagcac ctaaaatttc
     6001 aaaggtcgaa cgagctgtat actcaccatc tggcccatga aggacgatat tggctgaatc
     6061 gataagaact ttattgtttt gtaaattaga atttatgcca aaagctccca ttaaacgagt
     6121 aattctttca tcataaatat ccttaccttc ttcatctgaa aaatactggg aattatgaag
     6181 gtcaattttt gtatttgact ctaagattaa tttattgtct ttagcttcac catcaaaagc
     6241 tacagatcct gaaatataag gagctccatt taagggcaag gtgtagatat tttctacacc
     6301 cattattaat ataggagttt tctt
//
LOCUS       DARGEX010000084         6270 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.084, whole genome shotgun sequence.
ACCESSION   DARGEX010000084 DARGEX010000000
VERSION     DARGEX010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.084"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            91..561
                     /locus_tag="SF010_001411"
     CDS             91..561
                     /locus_tag="SF010_001411"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG8230320.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            563..1765
                     /locus_tag="SF010_001412"
     CDS             563..1765
                     /locus_tag="SF010_001412"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG8230321.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1766..2302
                     /locus_tag="SF010_001413"
     CDS             1766..2302
                     /locus_tag="SF010_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG8230322.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            2308..2907
                     /locus_tag="SF010_001414"
     CDS             2308..2907
                     /locus_tag="SF010_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8230323.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            2909..4051
                     /gene="folP"
                     /locus_tag="SF010_001415"
     CDS             2909..4051
                     /gene="folP"
                     /locus_tag="SF010_001415"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG8230324.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKQKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            4052..5995
                     /gene="ligA"
                     /locus_tag="SF010_001416"
     CDS             4052..5995
                     /gene="ligA"
                     /locus_tag="SF010_001416"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG8230325.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLVLREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            5976..>6270
                     /locus_tag="SF010_001417"
     CDS             5976..>6270
                     /locus_tag="SF010_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230326.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNL"
BASE COUNT         2240 a          712 c         1241 g         2077 t
ORIGIN      
        1 aaatatttta ttaaattttt aatgtatttt aataaaaatt tgatttgatt taggttaaaa
       61 ttatatcctt gagatttaag gaacaatatt gtggaaaacg agaaaaatta tagaccaaat
      121 gttgcagcta ttgttttatc aagttcttat ccttttgagt gtaagatttt tatagctaga
      181 agaagtgata tggataatat ttggcaattt ccacaaggag gtattgataa aggtgaaagt
      241 gtcaaaaacg ctttatttag agaactaaaa gaagaaatag gcactgatga ggttgaaatc
      301 attgccgagt atccagaatg gttgagttat gattttccga gtaaaattgt taaaaaaatg
      361 tatccttatg atgggcagat tcaaaaatat tttttagtgc gtttaaaaca cggtgttaca
      421 atcaatatta ataccaagca tcccgaattt gatgattatc aatttgtgag tgttaaacaa
      481 atttttgaaa tgattaatca tttcaaaaaa aatatttatg ttaaagtgat caaatatttt
      541 gaaaagaaag gttatatcta aaatgcttat agttcaaaaa tatggtggaa caagcgttgg
      601 aacacttgag cgtatcgaag cagtagccaa tagggttatc caaagtgcgc aacagggtaa
      661 tcaacttgtt gttgtagtat ctgcaatgag tggggtgaca aatactctta ttgagcaagc
      721 tgaatatttt agtaaaactc ctaatggtaa agatatggat atgcttttaa gcagcggaga
      781 gcgtgtaaca agcgctttac tttctatcgc cttaaatgaa aagggttgtc ctgctatatc
      841 attttctggg agaaaagcag gaattattac agatagtgtt tttacaaagg caagaattca
      901 tcatattgat acaaaagcga taaaatcaga acttcaaaat ggtaaaatag tcgttatagc
      961 aggttttcaa ggtgtagatg aggaaggtaa tgtaactacc ttagggcgtg gtggaagcga
     1021 tttaagtgct gtggcggtag caggtgcttt aaatgcggat ttgtgtgaaa tttatactga
     1081 tgttgatggg gtttatacaa cagatccaag aattgaacca aaggcaaaga aattggataa
     1141 aatttcttat gaagaaatgc ttgaacttgc aagtttaggt gcaaaagttt tgcaaaatcg
     1201 ctctgtagag cttgcaaaaa aattaaatgt taatttagta actagaagta gttttaacaa
     1261 taacgaagga acaatgataa caaaggaaga tggaatggaa caagctttag taagtggtat
     1321 tgctttggat aaaaatcaag caagagtgac tttaagaaat atagaagata agcctggaat
     1381 cgcagctgaa attttttctg ttttagcaaa tgaaaatatt aatgtagata tgattataca
     1441 aaatgttgga gttgatggtg ctacaaattt gggttttacg gttcctcaaa atgaacttga
     1501 attagccaaa aatgctatgc aaaaaatttt aagctcaaaa acaactatag aaagtgatag
     1561 tgctgtagta aaagtttcta tagtcggcgt aggtatgaaa tcacattcag gagtggcaag
     1621 taaagctttt aaagctttag ctgatgaggg gattaatatc ggtatgattt ctactagtga
     1681 aataaaaatt tcaatgatag ttcatgaaaa atacggagaa cttgcagtta gagcactaca
     1741 tgagtgctac ggacttgata aataaatgag tgatttttta agttttactc ttgaaaatat
     1801 tcgcaatggc ggagctttta tggcatggtt ggagtcgcgt cgtttagaat gggctccttt
     1861 gatggctgca agacttaaat atcttttaga aggacgcact tttgtattaa tgtgtgatga
     1921 acaaagatct tggtatgaag agtatttttt aaaaaatata aattcaaaag ccactcgtcc
     1981 catgctccct tttgtgtcgt taaattcttt atgtaagaag aaagtacaaa gttcagaaga
     2041 tatagcttta cttaatgact tgcttgacat ttcttttcct aatggttatg tatattttta
     2101 tataggaagt gcttctgata ataaatcttt aatcgctaaa tcaagagatg atagtttatt
     2161 gtggcttttt gatgagcagt tacaagatag tttttattta aattctaaag ataaagactt
     2221 ggatatcaag cttattagtt tatatcaact ttttgatgta agtttggatg caatattatt
     2281 ttccaaggtg caattaggat aaatattttg tttattagta agattattat cagtgaagat
     2341 tttttaggta ttaaggaaga aatgattaat aattttggta ttaaaaaatt aagatttttt
     2401 ataccacaaa atgaattttt acttgatgat gcaagagcgg ttgaaaaaga aagctatatc
     2461 gcagaaactg aagaaaaaat tattgtttta atggcggatt cttataggat agaagcacaa
     2521 aattttttac ttaaactcct tgaagaacct ccaaaaaata ttaaatttct tattgtgata
     2581 ccttctaaaa atttactttt acctactata aaatcacgtc ttatttgtga aaaaagaaaa
     2641 gttgaaaagg aagttaaaaa acttgattta gatcttaaaa gaatggattt aagaatgctt
     2701 tttgattttt tgcaaaaaaa tgaaaatttg gataaaaatg aacttatgga tcaaatcgca
     2761 ttgcttgcta aagaatgtgt gaaatataaa gattttaacg ctgaagaatt agagtttttt
     2821 tatgaaagtt atgagcttgc aaaattaaat tctaaaagcg gggtgctttt agctactctt
     2881 ttattaaatt actatacaaa gaaataaaat gaaatttttt aaaatcaatc caaacaccga
     2941 ttttaatttg ctttgttctt tcataaaccc tcataaaatg ggacaaaaga tcatgagtga
     3001 aaaaacaaaa attcatttta tttttatcaa agatatttct actcctgcgg caaatatttt
     3061 aaaacaagat gctttaagag taggagctga acttattact cataaagaag taattactgc
     3121 aaaaatcact cattcaaatg cgcttttaat ggcaagtaaa gagcaaattc aaaagcttgt
     3181 tgtcaaagaa aaacttcaag attttggact taaaaatttg gctctttttt tgcaaaaaga
     3241 ttttttaaaa cagaaaaaag ccgagcttat ggcagtgatt aatgtcaatg aagacagttt
     3301 taatgcaaaa agtcgtgtga gtgaagaaga ctttgaaaaa aggcttaatg actttcttgc
     3361 tttaaagcct gaatatatcg atataggtgc ggtaagttca agacctggga gtgagtattg
     3421 tggcaaggaa gaggaattta aaagactgaa aaaagtactt gacttaattt atgagaaaaa
     3481 ttattacgaa caagcaattt ttagtttaga tagttttgat gaatattgtc tagaatatgc
     3541 tttaaataag ggttttaaac tcattaatga tattacaagt ttaagaaatc ttaatctagc
     3601 caaacttgca agtaaatatg gggcaaaata ttgcttaatg cacatgcaaa acaatccaaa
     3661 taacatgcaa gataatcctt tttatgaaga tttgcttgat gagatgactt tgttttttaa
     3721 agaaaaactt gagcttttag aaagttttgg agtaaaagaa agtattttag atgtaggtat
     3781 tggttttgga aagagtgcgg ggcataatat gattttaatc aaacacttag aacatttttt
     3841 gcaatttaat aaacctttac ttataggtgc gagtcgtaaa agtgtgatta atgcgtattt
     3901 tcaaagcgag attaaagatc gtttagcggg aactttatat ttgcatttaa aggcttttga
     3961 aaatggtgct agtattataa gagtgcatga tttatatgag cataaacaac tttttgcttt
     4021 agcgcaggca atggataata taggagttta gatgaaaaaa gaagagtatt tagaaaaagt
     4081 tgctttagct aatttgtgga tgagggcata ttatgaaaaa gatgaaccct tggctagcga
     4141 tgaagaatac gatgctttaa tcagagaatt aagagttttt gaagaacaaa ataaagatga
     4201 aatttcaaaa gactctccaa cgcaaaaaat agctcctact atacaaagcg agtttaaaaa
     4261 aatagctcat ttaaagcgta tgtggtcgat ggaagatgtg tttgatgaga gtgagcttag
     4321 agcttgggca aaacgcgcaa aatgtgaaaa aaactttttt atagagccta aatttgatgg
     4381 agcgagttta aatttgcttt atgaaaatgg taaattagta agcggcgcca ctaggggcga
     4441 tggcgaagtg ggtgaggata taacgcttaa tgtttttgag atagaaaata tacctaaaaa
     4501 tatagcctat aaagaaagga tagaaattcg tggagaagtg gtgattttaa aagatgattt
     4561 tgagaaaatc aacgaaaaaa gagccctttt aaatcaaagt ttatttgcca atccacgcaa
     4621 tgctgcaagt gggagtttaa ggcagcttga tacaagcatc actaaagaaa gaaatttgaa
     4681 attttatcct tggggagtag gggaaaatac cttaaatttc accaaacaca gcgaggtgat
     4741 gcaatttatc agagagcttg gttttttaaa ggatgatttt gtaagacttt gcgctaattt
     4801 agacgaagtt ttaaaagctt atgatgagct tttagttcta agagaaaaaa aacctatgat
     4861 gatggatgga atggtggtaa gagttgatga tcttgcactt tgtgaagaat taggctatac
     4921 ggtaaaattt ccaaaattta tggcagcttt taaatttcct gcgcttgaaa aaaccacgcg
     4981 tttaataggg gtaaatttac aagtaggaag aagtggagtg atcactcctg tggcggtttt
     5041 agaacctgta aatttagatg gggttgtagt aaaatcagcc acccttcata attttgatga
     5101 aattgcaaga cttgatgtta aaatcaatga ttttgtaagc gtgataagaa gtggcgatgt
     5161 tatccctaaa atcactaagg tttttaaaga gcgtagagaa ggtttagaga tggaaatttc
     5221 acgccctaag ctttgtccta cttgccaaag tgagcttttg gatgaaggaa ctttaataaa
     5281 atgtcaaaat atagattgtg aagatagact tgtaaattct atcattcatt ttgtttctaa
     5341 aaaatgtctt aatatcgacg gactgggaga aaatatagta gaacttttat acaagcacaa
     5401 aaaaatcact acgcttgaga gtatttttca tttaaaattt aatgattttg aaggtttgga
     5461 aggctttaaa gaaaagaaaa ttaacaatct tttaaatgcc atagaacaag caagagaatg
     5521 tgagcttttt cgttttatca cagctttagg aatagagcat attggcgagg ttgcggctaa
     5581 aaaattaagt ttaagttttg gtaaagagtg gtacaagcaa agctttgaag cttatgccaa
     5641 tttagaaggt tttggagagc aaatggcttt aagtctttgc gaatttacgc gtgttaatcg
     5701 cacaagaatt gatgagtttt acaagctttt aaatttgaaa atagaaaaac ttgaaatcaa
     5761 aagcgatggt gtgatttttg gtaaaacttt tgtgattaca ggcactcttt cacgcccaag
     5821 agatgagttt aaggctttga tagaaaagct tgggggtaag gtaagcggct ctgtttctaa
     5881 aaagactgac tatgtgcttt ttggagaaga ggcaggttct aaacttagca aggctaaaga
     5941 gcttgaagta aaatgtataa atgaaagtgc ttttaatgag cttgttaaag aatagttctt
     6001 atattttaac gcttttaagc ctttttggct ttttgctaac ttggcaaagg agtgcttttt
     6061 ctttattttt tttaattcct atttttttaa cacttttttg ggaattcttt ttatttttaa
     6121 agcttagaaa aaatattata aaagaagcta ctttgattaa gggaagtttg ttttatcgta
     6181 ttagtatggg ggatttttat ctttatattt ttagcttttt tttggcgatt tttggacttg
     6241 tttctttatt tttaaatttt ttaaatcttg
//
LOCUS       DARGEX010000085         6218 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.085, whole genome shotgun sequence.
ACCESSION   DARGEX010000085 DARGEX010000000
VERSION     DARGEX010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.085"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            80..196
                     /locus_tag="SF010_001418"
     CDS             80..196
                     /locus_tag="SF010_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230327.1"
                     /translation="MPMKKIILFLLCFGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            207..1211
                     /locus_tag="SF010_001419"
     CDS             207..1211
                     /locus_tag="SF010_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8230328.1"
                     /translation="MKKIFLMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEIGFR
                     "
     gene            1211..2827
                     /locus_tag="SF010_001420"
     CDS             1211..2827
                     /locus_tag="SF010_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8230329.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2811..3719
                     /locus_tag="SF010_001421"
     CDS             2811..3719
                     /locus_tag="SF010_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8230330.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3755..4960
                     /locus_tag="SF010_001422"
     CDS             3755..4960
                     /locus_tag="SF010_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG8230331.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKKIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4988..5650)
                     /gene="sodB"
                     /locus_tag="SF010_001423"
     CDS             complement(4988..5650)
                     /gene="sodB"
                     /locus_tag="SF010_001423"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG8230332.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQVA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            5918..6100
                     /locus_tag="SF010_001424"
     CDS             5918..6100
                     /locus_tag="SF010_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230333.1"
                     /translation="MKKVVLISALLGAFAANVFAADTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
BASE COUNT         2183 a          783 c         1010 g         2242 t
ORIGIN      
        1 cagttataaa attattaagt tactttatat ttacttttta atattaatat ttcttatcaa
       61 aatatataaa aaggaattaa tgcctatgaa aaaaataatt ttatttttac tgtgctttgg
      121 ctttgctttt gcttgctctg aacattctca taccgatttt aaagatctta ataaaaccga
      181 gtataattct caataaagga taaaatatga aaaaaatctt tcttatgttt ttaacggctt
      241 tttcattttt aggtgctagt gagcttaata tttactcagc aagacattat gatgctgatt
      301 ttgaaatcat aaaaaaattc gaagaaaaaa caggtattaa ggtcaatcat actcaagcta
      361 aagcttcaga acttattaaa agactttctc ttgaaggaag taattcccct gctgatattt
      421 tcatcacagc tgatatttca aatcttacag aagctaaaaa tttaggactt ttatcccctg
      481 tttcatcaaa atatttagaa gaatttatac ctgctcattt aagagataaa gataaagagt
      541 ggtttgcgat tacaaaaaga gcaagaatta ttgcttacaa caaaaacgca aatatcgata
      601 ttagcaaaat gaaaaattat gaagatttag caaaagctga atttaaagga gaaattgtta
      661 tgagaagtgc tacagctcct tatagcaaaa ctcttttagc atctattata gctaatgatg
      721 gaaataaaga ggctaaagca tgggctaaag gtgtgcttga aaatcttgcg acaaatccaa
      781 agggtggaga tagagatcaa gccagacaag tatttgcagg cgaagctaaa tttgcagtta
      841 tgaatactta ttatataggg cttttaaaga attctaaaaa tccaaaagat gtagaagtgg
      901 gcaattcttt gggtattatt tttcctaatc aagacaatag aggaacgcat attaacatta
      961 gcggtattgc tatgacaaaa tcaagtaaaa atcaagatgc ggctaaaaaa tttatggaat
     1021 ttatgttaag tcctgaaatt caaaaaattc ttactgatag taattatgaa tttcctataa
     1081 gaaatgatgt agaattaagc caaacggtaa aagattttgg aactttcaaa gaagatcaaa
     1141 tccctgtgag taagatagca gaaaatatta aagaagcggt taaaatttac gatgaaatcg
     1201 gttttagata atgtataaaa ccttaaaata ctataaactc ggggcaattt tacttgccct
     1261 ttttcttgct ttgcctattt ttggtatttt tgctgaactt ttttatattt tatttcaaaa
     1321 ttttaataca agtaatttaa cccaattttc atctattaaa gaaaatttga gtcatttttt
     1381 tgattattta tttttaaaat tcatcaaaga tacttttata attagcgtgg gagtattgtg
     1441 tttaagcttg attttgggtg taagttctgc ttatttgatc gcaaattatg atttttattt
     1501 ctgtaaaatt ttagaaaaat tactcatttt acccttagcc atacctgctt atattttagc
     1561 ctttgtttat gtgggaatta tggattttca aggatttttt cacgaaaatt ttggctttag
     1621 gatggatttt ttcaatcatt atggtgttat ttttgttttg gctatttctt tatatcctta
     1681 tatttattta tttgctaaaa cagcttttaa aagtgaagct aaagaggctt atgaagtagc
     1741 taaaatcatg aaatattctg aatttagaat ttttacacgc gtggcacttt tgagtgcaag
     1801 acctgccatt ttttctggag ctttattggt tttaatggaa actttgagtg attatggtgc
     1861 aagtgcttat ttgggagtgg atactttttc ggctggaatt tttaaactct ggtatgattt
     1921 gaatgattct tattcttcta gtgttttatc gggtatttta atgctttttg tatttttgat
     1981 tatgtatgtg gattattatt ataaaaataa acatcattat agttttaatc aaaatttagc
     2041 tctttttatc aaaaaaagaa aattaaatcc tattaaacaa attctatcct gtatttattg
     2101 ttttatgatt gcttttgtag gttttatttt accttttatt tggctagttt attgggggct
     2161 aaaagatcat aagctttttg aatcgcaatt ttatattatc agttttcaaa ctataatctt
     2221 agctttaatc actgctttaa ttaccacttt tttagcttat tttttgatgt ttagctctag
     2281 gatagttaaa aatcattttt ttaatttatt tattttaaaa ataagttctt tgggttattc
     2341 tatacctgct gctgctttag ggattagcat tatagtgctt tttgtatttt tggataaatt
     2401 ttttcacatg agtttattgg gaaattcttt acttgttctt gtttttgctt atataattcg
     2461 ttttttagcg agtgcaattt attctttaga aggaggatat agtaaaattc atctaaatat
     2521 tgatgaggca agtttaaatt taagagcgag ttattttatt ttatttttta aaattcacac
     2581 acctttaatg aaacattttt tatttttggc ttttattatt gtttttattg atacgattaa
     2641 agaacttcct ttaagtagaa ttttagcgcc ttttggcttt gaaactttaa gtgttaaagc
     2701 tttctggttt gcaagtgatg aaagaattta tgatgcagct ttgccttcct tgtttatcgt
     2761 ttttctttct ttaatggttg ttgtttggat ggataaaatc acaaggaaag atgatgttag
     2821 aaattaaaaa tttatctaaa aattttgaaa aaatacaagc tttagaaaat atcaatcttc
     2881 atgtcaaaga aggagaattt ttaagcattt taggaggtag tggaagtgga aaaagcacgc
     2941 ttttaaggat tattgctaag cttgaacaag ctagttctta tgatttgttt tcttgcaaag
     3001 gtgaagtggc tttgatgttt caaaattatg ctttatttcc tcatttaaat gttgagaaaa
     3061 acatactttt tgcactttac gataaaaaag ataaaaatca aattttaaat catttgctta
     3121 aaacttttga aattgaagat ttaagatata aaaaaatcga tgaaatttca ggagggcaag
     3181 cgcaaagagt ggcttttgct agagctatag caagaggatg tcagcttttg cttttagatg
     3241 aacctttttc taatttggat caaaatttaa aacaggattt aagaagagaa ttgaaaaaaa
     3301 tgatagaaaa tcaaggcatt acggctatta tggtaactca tgatattgaa gatgcttatt
     3361 gtatgtctga tcaaatcgct tttttagaaa aaggaaaaat tttagctcat gcaaatccta
     3421 aagagcttta ttttaagccc gattttaaaa gtgcgcaaat tttacctgat ttaaatatca
     3481 tagaagaaaa acttgattta gaagatgaat tttttgcttg gatagcttca aaaaattata
     3541 tttttggtta tgcagaactt aaaataggaa atcgctttga ggctaaaatt ttacaaaaag
     3601 aatttttagg ggctttttat agacttaagt taagatataa aaatatagaa ttttttatgt
     3661 tattaagctc aaattataac ttagaagaaa aaataaattt tgatattatc aatttttagt
     3721 taaaattcct aaaaatcttt taaggacaaa tttcatgaaa aatcttttaa tcataggcgc
     3781 aggtggagta agtcgtgtgg ctactgtaaa atgcgcaatg aattctgata cttttagcaa
     3841 aatcacttta gctagtagaa caaaaagcaa atgtgatgaa atcgctactt ttatcaaaga
     3901 gcgtttaggg gttcaaattg aaacagcgca aattgatgct gatgatagca atgcggttgt
     3961 agaacttatc aagaaaacag gagcgcaaat tttactcaat gttgctttgc cttatcaaga
     4021 tttgagttta atggatgctt gtataaaagc agggattgat tatatagata cggcaaatta
     4081 tgaacatcct gatttagcta aatttgaata caaagagcaa tgggcgagaa atgataagtt
     4141 taaacaagca ggaattttag gacttttagg aagtggattt gatcctggtg taactaatgt
     4201 tttttgtgct tatgcacagc aaaatttatt tgatgaaatt tcttatatag atattttaga
     4261 ttgcaatgca ggtgatcatg gctatgcttt tgcgacgaat tttaaccctg aaatcaatct
     4321 gcgtgaggtt tctgctaaag ggcgttattg ggaaaatggc aagtggatag aaacgcagcc
     4381 tatggaaata aaaatggagt gggattatcc agaagtagga gtgaaagata gctatttgct
     4441 ttatcatgaa gaacttgaaa gcttggtaaa aaatatcaaa ggtttaaaaa aaatacgctt
     4501 ttttatgact tttggacaaa gttatttaac tcacatgaaa tgtcttgaaa atgttggaat
     4561 gctagggatt aaacctgtga tacaccaagg taaagaaatc attcctatag aatttttaaa
     4621 aaccttgctt cctgatcctg caagtttagg accacgcact aaaggttata ccaatatagg
     4681 ttgtgtgatt cgtggtaaaa aagatggaaa agacaaacaa gtttatattt ataatgtttg
     4741 caatcatgaa gaatgttaca aagaaactgg cgcgcaagct gtgagctata ctacaggtgt
     4801 tcctgctatg ataggtacga aattaatcgc taaaggaatt tggcaaggaa aaggcgtgtt
     4861 taatatggaa gaatttgacg ctaagccttt tatggaagag ctgaattctc aaggacttcc
     4921 ttggaagatt atcgaaatga ctccaagctt aggagagtaa aaaaggcatc gttttgatgc
     4981 ctttaaatta ttttacaggg tgaagttcat ttgcataaaa gctaactgat cccatgcctt
     5041 cttttaaagc ccattcgtaa gcttttgcaa caaattccca gttaatatga gcatagaatt
     5101 tttctaaata agcagggcgt gcattacgat gatctacata ataagcatgt tcccaaacat
     5161 ctacaacaag taaaggaact ttatcttcag taattggtgt agctgcgttt gaagtaccta
     5221 caaattctag tttttgattt ttagtattat aaactaacca aaaccatcct gaaccaaaaa
     5281 ctcctgtagc acctttgatg aattcagctt tgaaattttc taaagatcca aattcttttt
     5341 ctagtgccac ttgtaaatta gcatctatac tttgacatga accgccacag ccacagcctg
     5401 tacttggctt aatgcaatca aaataaaaat catgattata aacttgagct gcgttattaa
     5461 atacgccccc atttgaagtt ttgataatac ttacaagatc tttacctgca aattcagtat
     5521 ctttaataag attatttaga tttgtaacat aagtattgtg atgttttcca tgatgatagc
     5581 taaaagtttc agcactcaaa aaatcaccaa aagcattggt atcataaggt aattttctta
     5641 attcaaacat aatttctcct ttatttttag tttgatattg aaaatattac cataataata
     5701 ttaaaaagag taaaaatatc ttaaaagctt agtgggtaaa atttctattt atttaaccta
     5761 aataaaataa gatacattta taatatattt taataataat ttaaatatat ataaaaaatt
     5821 atattttttt gaaatatttt tacaaaaaat atctatttgt tgatttttaa taattacaat
     5881 taatttgcaa ctaaaaatta ttcataagga ggaaaatatg aaaaaagttg tactaatctc
     5941 agcattacta ggtgctttcg cagctaatgt ttttgcagct gatactccaa gcgatgtaaa
     6001 tcaaacacat acaaaagctc atcattcaaa agctaaagct gataaaaaac atgaagctaa
     6061 aactcacaaa aaaacaaaag agcaaacacc agctcaataa tgcccagcct tgatataagt
     6121 ctataataga cttatatcaa aagctattcg tattctacaa aataaattat taatatttat
     6181 taaatttcaa tagaaaaaat gaaaaaattg ttatttta
//
LOCUS       DARGEX010000086         6203 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.086, whole genome shotgun sequence.
ACCESSION   DARGEX010000086 DARGEX010000000
VERSION     DARGEX010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6203
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.086"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..176
                     /locus_tag="SF010_001425"
     CDS             <1..176
                     /locus_tag="SF010_001425"
                     /inference="COORDINATES: protein motif:HMM:NF021459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2172 domain-containing protein"
                     /protein_id="HEG8230334.1"
                     /translation="HSIKSGTKVFDWIVPDEWNVKEAYIITSEGEKICDFKKHNLHLL
                     NYSEAIDKEIELE"
     gene            207..1144
                     /locus_tag="SF010_001426"
                     /pseudo
     CDS             207..1144
                     /locus_tag="SF010_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            1141..1926
                     /locus_tag="SF010_001427"
     CDS             1141..1926
                     /locus_tag="SF010_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HEG8230335.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNKYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDLQQSYLCDINKINPIIQ
                     ETQNYKKINFAKNFIEIYNTREYVQAICQALTNDKLAIYKKDR"
     gene            1923..2147
                     /locus_tag="SF010_001428"
     CDS             1923..2147
                     /locus_tag="SF010_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8230336.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            2173..3049
                     /locus_tag="SF010_001429"
                     /pseudo
     CDS             2173..3049
                     /locus_tag="SF010_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            3049..4612
                     /locus_tag="SF010_001430"
                     /pseudo
     CDS             3049..4612
                     /locus_tag="SF010_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            4602..5663
                     /locus_tag="SF010_001431"
     CDS             4602..5663
                     /locus_tag="SF010_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG8230337.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPNFFMPSTACY
                     LHQLLNLSPKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLVCGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNETFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGTGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            5663..5884
                     /locus_tag="SF010_001432"
     CDS             5663..5884
                     /locus_tag="SF010_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8230338.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(5898..>6203)
                     /locus_tag="SF010_001433"
     CDS             complement(5898..>6203)
                     /locus_tag="SF010_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8230339.1"
                     /translation="KDPLTPANFKQQTMQILKILGYDVSLNLIDENKIDGKFIKNLDH
                     GCGIPDKALFRKELPLMLEKLQKRKSFMQENSISYPCGNKVFMFKDVGDKFELTIKD"
BASE COUNT         2368 a          862 c          969 g         2004 t
ORIGIN      
        1 ttcactctat aaaaagtggc acaaaggttt ttgactggat agtccctgat gaatggaatg
       61 ttaaagaagc ctatatcatc acctcagaag gagaaaaaat ttgtgatttt aaaaagcata
      121 atttacacct tctaaattat agcgaagcta tcgataaaga aatcgaactt gaataacttc
      181 aaaatcatct ttactccata gaagaaatgc ccgatgctat tccttatgta acgagttatt
      241 acaaaagacg ttggggattt tgtctcacgc ataatgaaag aaaaaaactc aaaaaaggca
      301 aatacaaagt ctatatcaat gcgaaacatg atgaaaatgg ggttttggat tatgctgatt
      361 ttatcctacc tagtacgcaa aattcaaaag atgaaatttt aatttcaacc tatctttgtc
      421 atccttccat ggcaaataat gagcttagtg gtcctgtggt ggctattttc ctagcaaaat
      481 ggcttttgag tttaaaagaa agaaggtata attaccgctt tgtcatcatt cctgaaacca
      541 taggctctat agtctatctt agcaaacatt tagagcattt aaaaaaacat gttaaagcag
      601 gctttgtgct ttcttgctta ggcgatgatc atgcttactc actcatacac acacccaaaa
      661 aaacactcta agtgataaag ttgccttgca tacgcttaaa aataaaaaaa atttcaaagc
      721 ttttagtttt ttagatcgtg gaagcgatga aagacaatac aatgctccgc ttgtaaatct
      781 tggcattgta ggagtatgtc gcacaagata cctagaatac gaacaatacc acaccagcaa
      841 agatgatctc aattttatct ctgaaaaagg tttaatgggt ggacttcaaa gcatacaaga
      901 aatgatttta aatctagaaa tcaacgctgt atatgaaaac accatagtat gcgaacccaa
      961 tcttggcaaa agaggactat atcataccct tagcactgcc aatgacattc ctttagcttg
     1021 taattttcta gcttactgtg atggagagaa tgatatcatc gatatagcca atatcttaaa
     1081 tatgcaagct tatgaattta aagaactttt gaaaaaaata aaattttatg gactagtaaa
     1141 atgaaatatt ttttagaaca caatgacaaa aaatactccg ataaggattt aatagatgct
     1201 ttttatcaac taggtataaa aagaggcgat attttatgtg tacatacaga actttttaaa
     1261 tttggcatac ctttgctttc tagaaatgaa tttttacaga ctatactcaa ttgttttttt
     1321 gaagttatag gtcaggaagg cactttgatc atgccaacct ttacttatag tttttgcaaa
     1381 aatgaagttt atgacaaaat aaattccaaa acaaaaatgg gagcattaaa taaatatttt
     1441 cgcaaacaaa caggagtaaa acgcacaaac gatcctatat tttcttttgc tataaaagga
     1501 gcaaaagaag aattattttt aaaagataca acaagttgtt ttggggaaaa ttgtgtttat
     1561 gaagttttag ccaaagagaa tggaaaatat ataatttttg gtttaaatga agggcacgct
     1621 ctagttcatt acgcagaaga aaaaaataca actttttgta gatattttaa aaattttaaa
     1681 ggtattttaa taaacgaaaa aaggaaagaa aaaacaataa ctattgacta ctacgttaga
     1741 gatttgcaac agtcttattt atgcgatatt aataaaatta atcctataat tcaagaaacg
     1801 caaaattata aaaaaataaa ttttgctaaa aattttatag aaatttataa tactagagaa
     1861 tatgttcaag caatatgtca agccttaacc aatgataaat tagccatata taagaaagat
     1921 cgataatgaa acaattttat gaaattttag aaaatatact tgaaaccaaa gtagatgaaa
     1981 atacaaattt aagcatggaa aactgcaaga actggacttc tttagctcat attgatatca
     2041 tcatgagttt agaagaagaa tttgaaatca aatttagcaa agatgaatta agtcagctaa
     2101 aatctcaaaa tgaactttta aaagctatta aggagaaatt atgttaaaaa aactaaaaaa
     2161 ctatttaaac tcatagaaga aaaaaatgct ttgcataaaa aatgtttaga tggattgcaa
     2221 ctttcagatg aagaatataa tgatttagaa aaacttatca tctattataa agatacatta
     2281 aacatcaatc tagaagaaca agctaaaagt tatatagttg tactcaatga cactctagaa
     2341 gaaactaaat attttataga atttggaaaa tatagatata gcactttagc agaagtaaaa
     2401 aatatggtat atttcaatga aaattatatg aagcaataca tggtgggact tgctatatct
     2461 tcttttattt ggaatgctca tattgaagtt agaagatatt ttgctaaata tatagataaa
     2521 aaacaagatc gaaaaagcac ttatcttgaa atcggtcctg gtcatggaga attttttgtt
     2581 aaagcactaa gaagtcaaaa aatttataga atattatgga atagatattt ctcctataag
     2641 ttgtcaaatg agcaaagata tggtagaaaa tcaatttgga gcaattaatc aaaataattt
     2701 taaatgtgat tttatatgta aagatttcac taaatgcaat ttcaacaata aagcagattt
     2761 agttgtaatg ggagaagtct tggagcacgt agaacaacct ttacagttta tgaaagatgt
     2821 aaaaacttta ctgaatgatg gtggagaaat ttttgcaacc atccctatca acgctcctgc
     2881 tattgaccat atttatttat tttcccatcc tgatgaagtt aaagatttgc ttaaaaatgc
     2941 aggtttaaaa atcaaagaat gcgaatattt tatggcaaat aattattctt tagaaaaagc
     3001 attaaaaaca aaaaatgcca ttgttatggc agtggttttg gaaaaataat gaatcttttt
     3061 tcacctcatt taaaacgcaa tgagcttata aaatttgcca aagaattaga ctttagtaaa
     3121 agtcaagatc ttcttattaa tatccataga aatcatactt ttgaaggagt gcaaagcatc
     3181 attgctcctt ttttacattt tgctaattta agagctgagt ttaatttcag ctcttatgat
     3241 gatagcttga gttttgataa ctttaaataa gctagtttag aacttttatg gctagattta
     3301 acccgctata aaaataatgt gcaaaatttt atagaagaaa gacttttaga actaagaaaa
     3361 atttcacaaa accctatttt agttcttagt ttaggagaat ttaaaacaga taaaaaaatt
     3421 ttaaattgtg aaatttttaa catagaaaaa ctcataaaag agtattttga tgaagaagat
     3481 attttagact tagctaaaga agaacttaca ggctctaagc ttaataataa agccttgatt
     3541 ttcttggcac aaattttagg acttagtctc atccctgcac ttgtaaaacc cgctcttaaa
     3601 gctcttgtac ttgatcttga taataccttg tatcaaggaa ttttaggtga agagggtata
     3661 gataatctta atttaagtcc tttgcacaaa accttacaag aaaaaattaa aacttttaaa
     3721 aaacaagggt ttttacttgc cctagcttca aaaaatgaag aaaaagacgc aaaaaaactt
     3781 tttgaaataa ggaaagattt catcttacaa tgggatgatt ttgatgctag aatgatcaat
     3841 tgggagccaa aaggtgaaaa tatcttaaaa attgctaaaa aatttaatat aaatactaac
     3901 gctatgcttt ttatagatga taatatcgcc gagcttgaaa ataccaaaat tacaggcgtt
     3961 aaaacacttt tatgcgatga aaatatactt tataaaatca aactttttcc taatctttta
     4021 aaactttcaa attaccaaag aagatcaaat tcgtgccaaa gatatagcag ccaatgcttt
     4081 aagagaagag cttaaaagct taagcgatga agaatatttt caaaatcttg aaatcagctt
     4141 aaattttagc aaaaatgatc tgcaaaatat ccctcgcatt agcgaacttt taggcaaaac
     4201 caatcaattt atcgctaatt acacacgctt aaatcaagaa aaagtcgcac aacacatgca
     4261 aaaagaactc attgtaagtg tgagcatgag tgataaatta agcgatagtg ggattatcgc
     4321 tatttttgtt ttttcttgca aagaaggaaa tttatttatc gatgatcttt gcatttcttg
     4381 tagggcttta ggtagaaaac ttgaaactag aatgtttttt aaagcctttg aactagcttt
     4441 acatttcttt gatcttaaaa acaataatgc aaggctttac tatcaaaaag gcgaaagaaa
     4501 tatgccattt ttaagctttt tagaacaaat ttctaaagaa attgaaaaaa actcagccct
     4561 tgtttcattt caaaatttaa actttaaagg acttataatc catgaaaact agatttgata
     4621 aagccaaaat ttcaggcatt tgcgtaagcg tacctgaaca taaaatttgc attgatgatg
     4681 agttagaaag cgttttttca aatgatatta aaacccttaa aagaatgaaa aaagtcatag
     4741 gcttaaacac gcgttatatt tgtgatgaaa acacttgtgt aagcgatctt ggcaaacacg
     4801 cagccaatac acttttacaa ggtttaaata tagataaaaa tagccttgac gcactcattg
     4861 tagtaactca aagtcctaat tttttcatgc cttctacggc ttgttattta caccaacttt
     4921 taaatttaag ccctaaaacc atagcttttg atttaggaca agcttgtgca gggtatttat
     4981 acggcttatt tgtcgctcat tctttaatac aaagtggctt aggtaaaatt ttgctcgttt
     5041 gtggggatac tttaagcaaa ttcatccatc ctaaaaatat gaatttagct ccaatttttg
     5101 gcgatggagt aagtgcaact ttgattgaaa aaacggattt taatgaaacc ttttttgaac
     5161 ttggaagcga tggaagacat tttgataaac tcatcattcc aaaaggtgcg atgagaatac
     5221 ctaaagcaga tatttttaac gatgattcgc tcatgcaaac tgaggagttt agacaattag
     5281 aaaatcttta tatggacgga gcaaatattt ttaatatggc tttagaatgc gaacctaaaa
     5341 gctttaaaga aattttagaa ttttctaaag tagatgaaaa agacattgct tttcatcttt
     5401 ttcatcaatc taatgcgtat ttggttgatt gtattaaaga agagttaaaa cttaatgatg
     5461 ataaagttcc taatttcatc atggaaaaat acgctaattt aagcgcttgt tcactacctg
     5521 ccctactttg tgaactagat actccaaaag aatttaaagc gagtttgagt gcttttggta
     5581 cagggcttag ctggggaagt gccgtgctaa atttcaagga tttatacaca aaagatattt
     5641 taatttacac aaaggagaaa taatgacaaa aactgaattt ttagaagagc ttaaagaagc
     5701 tatgcataga gatgaagact taaatgaaga tatgctactt gatgatatag acgagtggga
     5761 tagtttggct tttgtatctg tgatggtgct ttataaaaat ctttttgctt taaaaatcac
     5821 agccgaggac ttgaaaaatt gtcaaaaagt aagtgattta atcaatttag caaagcttga
     5881 ttaaaacctt taaggtttta atcttttatc gttaattcaa atttatctcc cacatcttta
     5941 aacataaaca ctttatttcc acaaggataa gagatggaat tttcttgcat gaaagatttt
     6001 cttttttgca atttttcaag cattaaagga agttcttttc taaataaggc tttatcaggt
     6061 ataccacaac catgatctaa atttttaata aattttccat caattttatt ttcatctatc
     6121 aaatttaagc ttacatcgta acctaaaatt tttaatattt gcatggtttg ttgtttaaaa
     6181 ttggcaggcg ttagaggatc ttt
//
LOCUS       DARGEX010000087         6054 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.087, whole genome shotgun sequence.
ACCESSION   DARGEX010000087 DARGEX010000000
VERSION     DARGEX010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6054
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.087"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            312..2402
                     /gene="cfrA"
                     /locus_tag="SF010_001434"
     CDS             312..2402
                     /gene="cfrA"
                     /locus_tag="SF010_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEG8230340.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQKYNKDNMIPGIGICGVDRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRIYISINGSF"
     gene            2703..3497
                     /locus_tag="SF010_001435"
     CDS             2703..3497
                     /locus_tag="SF010_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG8230341.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3494..4021
                     /gene="grpE"
                     /locus_tag="SF010_001436"
     CDS             3494..4021
                     /gene="grpE"
                     /locus_tag="SF010_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG8230342.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRIEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            4043..5914
                     /gene="dnaK"
                     /locus_tag="SF010_001437"
     CDS             4043..5914
                     /gene="dnaK"
                     /locus_tag="SF010_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG8230343.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2269 a          784 c         1151 g         1850 t
ORIGIN      
        1 atgattttat tttttgattt aaatatcttt atttcttaaa cacattctat gataaattgt
       61 ttaaaaagat aaattttgaa acaaatttca cagagaaaaa taacaatcaa ataatcaagc
      121 ttgtatctaa aagatattta atttttgcta tttacttctc taaaaaaact tatattttta
      181 agaattatag caagaaaaaa taaattttta attaatacta attatcacaa ttgatacaaa
      241 atttatctta aattaataat tattatcata atattttgat ttctaaatca atatttaaca
      301 aaaggagaaa aatgaaaaaa atatgtctat cagtttgcgc cattggtctc ttaagctcca
      361 atgccatatc gcaaaatgta gaactagata gctcaatcgt tagtgcttct ggctttactc
      421 aagatattaa agaagctcct gctactatca atgttatcag taaaaaagaa ttacaaagta
      481 agccttatag agatgttgca gaggctatcg cagatatccc aggcgttgat ttatatgcta
      541 gcaagggaaa aacaggttct tataatatta ctatgagagg tattacggga tatactttgg
      601 ttttgattga tggacgccgt cagggtattg gtggggaagt tggtcctaat ggctttaatg
      661 aaatttcaaa ttctttattg cctccaattt ctagcataga aagaatagaa gttataaaag
      721 gtcctatgag tactttatat ggctccgaag ctttaggcgg ggtggtaaat atcattacca
      781 aaaaagtaag tgataaatgg gaaacttctg taagcttgga cgctctttta aatgaaaata
      841 aagattgggg caatacttat ggaacaagta tttattctag tggtcctttg atgaatgaca
      901 aattgggtct aacacttcga tttagagaat tttacagaca gcaatctaat gttgaattta
      961 caaatggaag tggacaaaga gttcaaggag atcaagctca aagtcccaca aaagcaaata
     1021 attttaatat aggaacaaga gtcagttatt tggctaataa ttataatacc tttatatttg
     1081 atatagattt ttcaagaaat cattacgata acaaacaggg tcaattagga accatcacaa
     1141 gcccaggtag tgcgccaggt agcttaacgg gtggttatgc agatattatg gaagttgata
     1201 aatttgtgac ttatttaagc catgagggtg tttatgaaaa cttttctatc acttctggtt
     1261 tgcaatacaa tagggtaagc aatgatggcc gtgaagtcgt agggcaagct acacagccgt
     1321 ttttgggaga aaatagagat atagtcgcag aagatattat cttagatact aagtctgtca
     1381 ttcctttggg acaaagtcat attttaagcg caggtggtga atataggctt gaaaaaatgc
     1441 aagataaaat agctaatccg accaattttg atcagtattt attggcaata tttgcagagg
     1501 atgagtacag cataaaagat aacttaagat tgacttttgg agcaagatac aatcatcatg
     1561 aaatttttgg aaataatatt tcgccaagag cttatctagt ttataatcct actgatgaac
     1621 ttactttaaa aggcggtgta tctacgggtt ttaggactcc ttatgcaaat cgtttgataa
     1681 atggagctta taattatagt ggtcaaggta gatttcctat atatggaaat cctgatttaa
     1741 aagaagagac atctttaaat tatgaaatag cagctattta caataatgat ttgttttatg
     1801 tttctgcgac aggtttttta acaaatttta aagataaaat ttcaacccaa aaatataata
     1861 aagacaatat gattccagga attggtattt gtggtgttga tagatgtttt aaggcaatca
     1921 accatggcaa ggtcgaatat aaaggcatag agcttggagc agggataagc cctcttgata
     1981 atttaaatgt aaattttgct tatacttatc ttgatagtga ggttaaagaa gcacaagata
     2041 aaagtgtgat aggtaaacct gaacaggata gtttaaaaca caatatcatg ttaaaaactg
     2101 aatacagctt ctataataaa attacccctt ggataaaagg cgaatggcaa atagatcgct
     2161 atatgggtga tactaatata aatagggaat attataagga tatcttttta gcttctatgg
     2221 gtgtgcgtta tgatatcaat aagcaatgga gtatcaatgc agctatttat aatcttttta
     2281 acaaaagttt tacagatggt tgggaatctt atcaaaatag cggtgctcct acttgggtca
     2341 atacttacaa tcgtatagaa gaaggaagaa gaatatatat ttccattaat ggtagttttt
     2401 aagctttgat agaaaagcca aagagcttat aaaggcttct ttggtttttt gtttatagca
     2461 tcttgtgctt ttaaaaaagt taaattatcg aatctattta aaatttctta tctaattatc
     2521 accctgttta ccaatcttga aatatatcct atccttataa aaaagtaact aataaaactt
     2581 tagttatata gactaaataa aattaagtat atttttttat atttatactt gacaaaataa
     2641 cactcaatgt tgtataatat atctagcaat caaaaaatag agtgctagct ttaaaggaaa
     2701 acatgatgaa aagtcgagat aaaaaggatt tgattttaga gtctattatc caaacttatc
     2761 ttttggataa tgcacctatt ggttctaatg aattaaattc aaacctttgt atacctgctt
     2821 cgactatacg cgtttatctt aaaagactta gcgatgaggg tttgatcact cagcttcata
     2881 taagtagtgg tagaattcct actattttaa cgatgcaaaa ttattggcaa agtttttggg
     2941 aaaaagaaca agataaaaat atccatatca aaaacgaaag ctttttgaaa gagttaagta
     3001 aagaatttga aatttattgt cttgtttatg gaggtagaag tttagtactt aaagaagtac
     3061 tagatcttaa tactaaattt atagtgcttg attttgaaga tgaagagctg gttttaaaat
     3121 acgaaaaaga agcgtggaat tttttacaaa gtcttatagg gcttgatctt tctagtatag
     3181 aaaaaatagc tttgagagtt cattttatag atcttgtaga aaaaatagct agcttaagac
     3241 aaaatttgat ttgctataga agtaatgaag aaagagctta tcaaatttat caaaatgatg
     3301 aatttgttaa gctcttagat tgtcaaattc accgtcattt taaagaaagt cttgaatttg
     3361 aacctttatt taaagaaggt tttatggggc ttaaggtaga tgcgcagttt ttgggcgaag
     3421 atgtaaatat tatcttagca ggtagtgttt atacggatta taaaaagata ttacaataca
     3481 taaaggaggc ggcatgagcg aacaaaagca agaaattgaa aatgaaaatg cacaaaattc
     3541 tgaaaatttg caggatgatt tgcaagataa tgaaaaaaac gaaacaaatg aattacaaaa
     3601 agaattagag gaattaaaag ataaatatat gcgtgcaaac gctgaatttg aaaatattaa
     3661 aaaaagaata gaaaaagaaa agctaagtgc tatggcttat gcaaatgaaa gctttgcaaa
     3721 ggatttgctt gatgttttag atgctttaga agcagctgtt aatgtcgaat gccaagatga
     3781 aattagctta aaaatcaaag aaggagtgca aaatacttta gatttatttc ttaagaaact
     3841 tgaaaaacat ggggtggctc ttatcaaaga tgaaaaagag tttgatccta atttacacga
     3901 agcaatgttt catgtagata gtgaaaacca tcaaagtggt gaagtggttc aagtgcttca
     3961 aaaaggttat aaaatagccg atcgcgtgat ccgcccaacc aaagttagtg tagcaaaata
     4021 aattttaata aaaggataaa aaatgagtaa agttataggt atagatttag gaacaaccaa
     4081 ttcttgtgtt gctgtgtatg aacgcggcga gagcaaagta atcccaaaca aagaaggaaa
     4141 aaacacaact ccttcagtgg tagcttttac agataaaggc gaagttttag taggcgatag
     4201 tgcaaaacgc caagcggtaa ccaaccctga aaaaaccatt tattctatca aaagaattat
     4261 gggtttaatg atcaatgaag atgcggctaa agaagctaaa aatagacttc cttaccacat
     4321 caccgaaaga aatggtgcgt gcgcaataga aatcgcaggt aaaatttata ctccgcaaga
     4381 aatttcagcg aaagttttaa tgaaactaaa agaagatgct gaagcttttt tgggcgagag
     4441 tgttgtagat gcggttatta ctgtgcctgc gtattttaac gatgcacaaa gaaaagcaac
     4501 aaaagaagca ggaactatcg caggacttaa tgtattaaga attatcaatg agcctacttc
     4561 agcagctcta gcttacggac ttgataaaaa agatagtgaa aaaattgtgg tttatgatct
     4621 aggtggggga acttttgacg ttactgtgct tgaaactggc gataatgtag tagaagtttt
     4681 agcaacaggt ggtaacgctt tcttaggtgg tgatgatttt gataataaac ttatcgattt
     4741 tctagcaagt gaatttaaag atgaaacagg catagatctt aaaaatgatg ttatggcttt
     4801 gcaacgcttg aaagaagcag cagaaaatgc taaaaaagaa ttaagctcag ctaatgaaac
     4861 tgaaattaat ttaccattta tcacagctga tgcgagtggc ccaaaacact tggttaaaaa
     4921 acttactaga gctaaatttg aaggtatgat tgattcttta gtggctgaaa ccatcactaa
     4981 aatcaatgaa gtagtaagcg atgcagggct taaaaaagat gagatcaaag aaatcgttat
     5041 ggtagggggc tctactcgtg ttcctttagt gcaagaagaa gtgaaaaaag cctttaataa
     5101 agatcttaat aagtctgtaa atcctgatga agttgtggct atcggtgcgg cgattcaagg
     5161 tgcggttata aaaggtgatg taaaagatgt gcttttactt gatgttacac cgctctcttt
     5221 gggtatagaa actctaggcg gggtaatgac taagattatc gaaaaaggta caactattcc
     5281 aactaaaaaa gagcaagttt tctcaaccgc tgaagataat caaagtgctg taactatcaa
     5341 tgttttacaa ggggaaagag aatttagtcg tgataataaa tctttaggaa attttaatct
     5401 tgaaggaatt ccaccagcac cacgcggtat gccacaaatc gaagttactt ttgatatcga
     5461 tgcaaatggt attttaactg ttagtgcaaa agataaagca acaggtaagg ctcaagagat
     5521 caaaatcaca ggttcaagcg gacttagcga ggaagagatt aataacatgg taaaagatgc
     5581 tgaacttcac aaagaagaag acaaaaaacg caaagaagct gtagatgcta gaaatgcagc
     5641 tgatagcttg gcgcatcaag tagaaaaatc tttaagtgag ttgggtgaaa aagttgccgc
     5701 tgctgataaa gaaaatattc aaaaagctct tgatgatttg cgtgagactt tgaaaaatca
     5761 aaatgcaagc aaagaagaga ttgaaagcaa aatgaaagct ttaagtgaag tttctcacaa
     5821 actagctgaa aatatgtata aaaaagatga gccaaacaca gcaaatgata aaaagaaaaa
     5881 agatgacgat gtaatcgacg ctgaagttga gtaatcttaa aatctctatt caagcctttt
     5941 taaaaggctt gaaaattttt taaaatttta aaaaaatgac aaaatctgta aaatataatt
     6001 tttttattag cttgctacct aatttttcat tgatttttta accaattctt tttg
//
LOCUS       DARGEX010000088         5949 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.088, whole genome shotgun sequence.
ACCESSION   DARGEX010000088 DARGEX010000000
VERSION     DARGEX010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5949
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.088"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            26..442
                     /locus_tag="SF010_001438"
     CDS             26..442
                     /locus_tag="SF010_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8230344.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(451..2067)
                     /locus_tag="SF010_001439"
     CDS             complement(451..2067)
                     /locus_tag="SF010_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8230345.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2071..3321)
                     /gene="mtaB"
                     /locus_tag="SF010_001440"
     CDS             complement(2071..3321)
                     /gene="mtaB"
                     /locus_tag="SF010_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG8230346.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3318..4889)
                     /locus_tag="SF010_001441"
     CDS             complement(3318..4889)
                     /locus_tag="SF010_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG8230347.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            complement(4886..5941)
                     /locus_tag="SF010_001442"
     CDS             complement(4886..5941)
                     /locus_tag="SF010_001442"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG8230348.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCEGSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
BASE COUNT         2043 a         1072 c          640 g         2194 t
ORIGIN      
        1 actaaaaaat aatttaggaa aaatattgaa aattaaattt ttaaatatta ttactatttt
       61 aagtttatct ttaaatgctg atataataat ttctgctgat aatttaccaa atgtttctaa
      121 agaattttta caacataatt tcaaagcgcc tatagggatc gtgcaaaaag acaaaaattc
      181 ctatgaagtc tatcttagcg atggaacaga gcttgaattt gatatagatg gagcttggaa
      241 ggaaattgaa aataaagcct ttccttttga tctagatttt ttacctcaaa atttagccaa
      301 tatcatcaaa agcgaatttc caaatacaaa agctagagaa attgaaagaa aaatcaacca
      361 ttataagatt aaacttgata acgatataaa aattcttata gattttaatg gaactatctt
      421 atataaagaa tttgatgatt aaacatatca tcaaacctgc attatatctt taacatcgtc
      481 atattctatc ttttcttttt caagcaaaag ctctgataat tttaaaattt tatccttcat
      541 agaatttaaa aattcatcca tttctttttt ttgttcactt aaatttgact ctttcaacat
      601 atcaaaactc aacatataat caagcaattc tttaatcttt aaaaaatcat cttgcgagtt
      661 agtataactt tcattgtaaa tcaatctcat ggctctagaa ccagccaaat aaacttttat
      721 acgattgata agctctgatt ttgatcttat attatgctca tattctttaa aacgatcttc
      781 aatgagagtg attttttcaa atcctatgtc aaaataatac gcactcaaag cttttgcagc
      841 ttgataagtg gcttgaattt tcttctcttc atcattaaaa cttaaaatct ttttcttacc
      901 taaaagaact ttatttaata cagcataaaa atcgctttcc tcaactaaag cactatttct
      961 tcttaaagca ttaattgctg cttcattgac caaagtttca agccctgctc cactaaaacc
     1021 tacgcttgct ttagcgattt tatttaaatt gatattattg tttttatctt tcatataaat
     1081 ttctaaaatt ttaagtctat ccttaaaatc aggcaaagat aaaaaaattc tcctatcaaa
     1141 acgccccgaa cgcaataaag caggatccat aagttcgatt ttatttgtcg cagctataac
     1201 aataacccca ctattatcct caaaaccatc catttgagtt aaaagttgat ttaaagtgct
     1261 atctctttca acatttgaca tttctcctct tgccttacct acggcatcta tttcatcaat
     1321 aaaaactatg ctaggcgcca tcattttagc ttttgaaaaa agctctctaa ctctttttgc
     1381 acccatacct acataaattt caacaaaact tgaaccactt tgataaaaaa atggcacccc
     1441 tgcttctcct gcaactgctt ttgctatcaa tgtttttcct acaccaggtg ggcctaccat
     1501 taaaacacct tttggcattt ttacaccaaa ttctttatat tttttaggat tttgtaaaaa
     1561 atccacaagt tcgcttagct ccattttaac ttcatcaaca cctgctacat cattaaaagt
     1621 aatatttgaa atcacaggtt ttatatggga actttctaaa tttatatttg aattttgagc
     1681 ttgagtgtga ttttgattct tatttgatat tggatattta gccaactctt ttttacgagc
     1741 aaaataacca agacttataa aaagtgcgat aataaaaata agtaaaacaa aaaacaccca
     1801 aagcgtatta tcttttttaa cctctacggg aacttttgat aaaagtgttt ttatatctat
     1861 gccatctttt ataattacgt aattttcacc ttctgcctta agccaaattt cgtctttatc
     1921 aatcacagct ttttggatta aattttggct taatagactt tgataaagat tttcatctat
     1981 atatttaggt tcatttttaa aatataaaat tcccaaaagc atacataaaa ccataaaaga
     2041 tgctaaaatt atctttttat ttttcattat ctagcctttt aaatttgtaa agttagactt
     2101 ttcttgtact tcatattcag atataacgat ccattcttta gctatatctt tatcactttt
     2161 aattttgatc ttattaaaaa actgatcata accctcaaaa aaaccatctt tttgattttc
     2221 taccaaaact tcaagtgaaa cttgattttt tttcctaaat tcataattat ttttttctac
     2281 tatggatttt aaagtgttta gcctttcttt agctaaagtt ccatttatca catctttcat
     2341 ggtagcagaa tgcgtgttgt ttctagggct aaaaataaaa gcatggatat gagtgagtgg
     2401 aaattcttta aaatttctta aagcttcttg ccatagctct tcactctcgc ctggatgagc
     2461 tactataaaa tccgtcccta aagcatatcc tttgcttgct atagtattaa aaagctttaa
     2521 atcattatcc gtatgtgatc ttcttctcat tatacgaagc attttttcac ttgtatgttg
     2581 caatgcaata tgtaaatgcc tttcaagcca agcttcatct aagatttcta aaaaactttc
     2641 atcaagctgt gcaggttcta aactacctag ccttatgcgt tttataccta aaatttgtcc
     2701 cattttttgc aaaagcttgc ctagggttgt gccattttta agcccatatg aacctatatt
     2761 agtccctgtt aaaacaattt cactataacc attagctccc aaaatttcaa cctgttttaa
     2821 aagagctttt tcatccacac ttcttgattt tcccctcacg ctaggaataa tacaataaga
     2881 acaagcaaaa tcacaacctt cttgaatttt cacaaaagct ttggtatgat tttcatactc
     2941 acaaactata tctttatcaa taaaatttaa atttccaagt tcataaaaac ttgtctttgc
     3001 tcctaaaaat tcattgattt tatctttatt tgacgctcca agcactccaa aaacttgctt
     3061 tttatctaaa agctccttac ctttgcttac agcaccacaa cctgtaagta taactttaat
     3121 gccttttttt tgcatggtat ttacataaga ctttatcccg ctatcagctc catttgtaac
     3181 cgtgcaagaa tttacaacga taatttgtgc tttattctca tcatttataa tctcataatc
     3241 ttttacataa ctttttaaaa gctctgtatc ataaatattt gtgcgacacc caaaggtttt
     3301 aaaaaaaact ttttctttca atccttattc cttgcatgaa aatacatatt ttcatgatgt
     3361 tgttcaaaat gattttgatt taaatttcct aaatataaat tttgcgatgg ataagcaatt
     3421 tttatatctt tatgcttatt aaattctttt ataatctctt tgctaatcgt acttcttaat
     3481 accaaagccg cataagcatt agtcatatac catgcagaaa ttctcattcc ccaatgttca
     3541 aaaaacataa aaaaccttgg ctccacttta ggatttttaa tactatattc atgttgtaaa
     3601 cgagctatat tttttctagc aagctcagta taacctttgg catggcgtgt aacaatattt
     3661 tccacaattt cttgagcttt gtcaagattg ctatcaaaag taacacttat atcaatgcca
     3721 tcaagcacgg ttttcatacc atgatgggta taattagcaa gcaaatttgt aaaaacatag
     3781 ttattaggaa taaatataat acgcccacta cgacgatttt tattataagt ttcaagcgta
     3841 agctcttcat aaagagtaat gcgtaaaaaa gaaatgtcta taatatctcc tatataggta
     3901 gtatcatttt gaaaaacttt tacacgatcc cctactctaa aacttccgcc aaaaataatc
     3961 acacaccatc caagcataga cataaacata tctttcatag caatagctaa gcccgcagag
     4021 gcaaaaccaa gtatagttac aagataagta atattttcta tataagcaaa gagcaaaata
     4081 agaaaaataa tatttatatt aataaaatta ataatcttcg tagcagtata atatctttca
     4141 ctatctttaa tgtatttttt agcaataaat ttcaacataa aagctatagc tataacaata
     4201 acaatagcaa caagtatatt tacagccctt aagctttgaa ctttaatctc agcacttact
     4261 cgagaaagct cttcatcaat ttttttctca taaacagaat aagaaacact agcaaaattt
     4321 aaagcttgct caaattcttc caacttttta tccgaagctt ttaaagcttc tatattctca
     4381 acacttggtt taagctcaac taattcctta agttctgagt ttttttccct gattttatct
     4441 actaaatttt taaaatcatt aaatttaaat atatattctt ccttttctcc ttttaatttc
     4501 ttaatatgag aaaaagctcc tataatagcc aaaggattag taagcttaga taaagtttct
     4561 atattatcag gggcactaag actttgtgca aaatttaaat ctttatattc tttaagcagg
     4621 ctcaattgct cttctaaatt tgctatcttg cgtttaagtt cttcttgttg gtgaatatcg
     4681 gaagtctttt ttaaattaag atttaaaatg attaattcat catttatatc ttgatatttt
     4741 ataaaatttt cataacgtat attccaaata ctagcactga ttacagtatt taaagtatta
     4801 attttctcat ttatattatt aataatagtc cgatttacat caccaaaagc aaaaacaaca
     4861 aaaaaggtta aaataataat ttttttcatt ggaattctct taaagttgca attatatctt
     4921 ctttagaaat atcacctttt atcaaaccct tacccaaagg actagcaaga acaaaattga
     4981 tttttttatt agagcttttt ttatccatga aaaaagcttc ataaaattca tctacattgt
     5041 tgattttata tgatattggc aaaccgaatt taagtaaaat atcttttatt ctttgacttt
     5101 gcattttatc caaaaaccct aaatttaaag ccaattgatt tgccataacc atacctatag
     5161 ccaccgcttc tccgtgtaaa taaagcttat aatctgtaaa attttctata acatgagcaa
     5221 aagtatgccc ataatttaaa agcattctaa gccctgattc tttttcatct tgttcaacaa
     5281 cccttgattt aagttctatg cttcttgcta taatttgagt aaaaatttca ttctcacaag
     5341 tagcatttaa gaaacttttt tcatcaattt tttctataaa atcaagtata ctatcatcaa
     5401 acattgctgc cattttaata aattcagcca tgcctgcagc aagttctcta gagctcaaag
     5461 tctttaaaaa agaaccctca caatatacag ctttaggttg ataaaaagtg ccaataagat
     5521 ttttaccaaa attattatta acacctgttt ttccacctac tgctgcatca acgcaagcta
     5581 aaagtgtagt aggaatattt ataaaatcaa tacctctttg ataaatacta gcagcaaatc
     5641 cgcccatatc actaatcacg ccaccaccaa aacttataag cacgcttttt ctatccaatt
     5701 tagaattaaa catttggttt aaaatttctt ccatggtgct taaattttta tattcttcac
     5761 catcttttac agtggcaata aaaatttctt ttgccttaat tttagaaagt aatgttttca
     5821 aatgaagacc tgaaatctta ggatttgaaa gtataaaaac cttactatca aattctaatt
     5881 cttcaagttc atcaatataa accttataag cattttcttt taacttaact tctacttgca
     5941 ttgaactac
//
LOCUS       DARGEX010000089         5943 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.089, whole genome shotgun sequence.
ACCESSION   DARGEX010000089 DARGEX010000000
VERSION     DARGEX010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.089"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="SF010_001443"
     rRNA            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="SF010_001443"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(358..3264)
                     /locus_tag="SF010_001444"
     rRNA            complement(358..3264)
                     /locus_tag="SF010_001444"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(3792..3868)
                     /locus_tag="SF010_001445"
     tRNA            complement(3792..3868)
                     /locus_tag="SF010_001445"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3832..3834),aa:Ile,seq:gat)
     gene            complement(3877..3952)
                     /locus_tag="SF010_001446"
     tRNA            complement(3877..3952)
                     /locus_tag="SF010_001446"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3917..3919),aa:Ala,seq:tgc)
     gene            complement(4055..5567)
                     /locus_tag="SF010_001447"
     rRNA            complement(4055..5567)
                     /locus_tag="SF010_001447"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         1578 a         1451 c         1084 g         1830 t
ORIGIN      
        1 actttccccc tgccagtaag gcgtagtatc atcacccacg atgtgcttag cttcttggtt
       61 cgggatggag caaggcgttt ccacatctgt ataatcacgg acattgttat ttaaatattc
      121 tttgaaagat tgaatttaag aataaaactt aatcttttat ttctttactt ttttctttat
      181 tctctttctt cttttcttat cttttatctt tgataagttt ttatatagaa tacttaaaaa
      241 acaatgttaa gagcaagttc taatacaaac tctacttgaa agatttctat taaactctaa
      301 atattatcta tatttaaagt attcttaaaa accttaacaa ggaagtgatg ctttattaaa
      361 gataagccaa acgctctatt agtactggtc agctaaagga ctttcatcca ttacacaccc
      421 agcctatcaa actagtagtc ttctagagag cttagagaag attcatctta gagttggctt
      481 cacgcttaga tgctttcagc gtttatcctt tccaaactta gctacgctgc gatgctcttg
      541 gcagaacaac agctacacca gtggtttgtt caacccggtc ctctcgtact agggtcaaat
      601 ctcttcaatc ttcttacgcc cacggcagat agggaccgaa ctgtctcacg acgttctgaa
      661 cccagctcgc gtaccgcttt aaatggcgaa cagccatacc cttgggacct gctccagccc
      721 caggatgcga tgagccgaca tcgaggtgcc aaacctcccc gtcgatgtga gctcttgggg
      781 gagatcagcc tgttatcccc ggggtacctt ttatcctttg agcgatggcc cttccacaca
      841 gaaccaccgg atcactaaga ccgactttcg tctctgcttg acttgtatgt cttgcagtta
      901 agctggctta tacctttata ctctacgaac gatttccaac cgttctgagc caacctttgt
      961 aagcctccgt tattatttgg gaggcgaccg ccccagtcaa actacccacc agacattgtc
     1021 ccacttgagg ataactcaag ctggttagct acccaaataa gaaagagtgg tatctcaaca
     1081 atggctcata tacaactggc gtcatatact caaagcctcc cacctatcct gcacattctt
     1141 atccaagtag cagtgtcaag ctgtagtaaa ggtccacggg gtctttccgt cttgccgcgg
     1201 gtaggaggaa ttttcacctc cactacaatt tcactggatc cctctttgag acagctccca
     1261 tctcgttacg ccattcatgc aggtcggtat ttaaccgaca aggaatttcg ctaccttagg
     1321 accgttatag ttacggccgc cgtttactcg ggcttcgatc aagagcttcg ctaatgctaa
     1381 ccccatcaat taaccttcga gcaccgggca ggcgtcacac cctatacatc ctcttacgag
     1441 ttagcagagt gctgtgtttt tggtaaacag tcgggaggga ctctttgttg taagtttctt
     1501 cgctttcgga gtaaatccta gtacgaagct aaccacacct tataccgaag atacggtgct
     1561 attttgcaga gttccttaaa gagagttctt ccacgcgcct tagaatactc atcccaccca
     1621 cctgtgtcgg tttacggtac gggcaacatt agctaaactt agaaactttt cttggctcga
     1681 cggcatcagg ggttcttcta tccatccgaa gacttcaaaa agcctttcag ttctcggagt
     1741 attgttatac ggatttgcct gtacaacctc ctacgacctt agactagcac ttccatccgc
     1801 tagccccctt agccctaagc gtccttccat cgcacactaa tgttggtatt ggaatattaa
     1861 ccaatttgcc atcgtctacc cctttcggac tcgacttagg acccgactaa ccctacgatg
     1921 acgagcatcg cgtaggaaac cttgggttta cggcgttaat gattctcaca ttaattatcg
     1981 ctactcatgc ctgcatgctc acttctattc gctccagcac tccttaccgg tataccttcg
     2041 acgcaaatag aacgctctcc taccacttag taaactaagt ctacagcttc ggtacttact
     2101 ttagccccgt tatattttcc gcgcaaaatc actagaccag tgagctatta cgctttcttt
     2161 aaaggatggc tgcttctaag ccaacctcct ggttgtttaa gtaacttcac atcgttttcc
     2221 acttaagtaa gatttaggga ccttagctgg tagtctgggt tgtttccctc ttgacgacgg
     2281 attttatcac tcgccgcctg actgctgtga ttacatataa ggtattcgga gtttgatagg
     2341 gtttggtaca ttggtgtatg ccctagccca ttcagtgctc taccccctta tattacgaca
     2401 caacgctata cctaaatata tttcggagag aaccagctat cacgaagttt gattggcctt
     2461 tcacccctat ccacaagtca tcccggggct tttcaacgcc tatgggttca gtcctccact
     2521 agttcttaca ctagcttcaa cttgctcatg gatagatcac ttcgtttcgg gtctgcagca
     2581 tctgactaag cgccctattc agactcgctt tcgctacggc ttcgcgtttg cttaaccttg
     2641 ccagacacca caactcgcag gctcattatg caaaaggcag tccatcaccc tgtattccta
     2701 catagggctc tgaatgattg taagcaaatg gtttcaggtt ctatttcact ctgatcacct
     2761 cagttctttt cacctttccc tcacggtact tgtgcactat cgatctggta ttagtattta
     2821 gggttggatc gtggtcgacc cggattcaga caggattcct cgtgtcccgc cctactcagg
     2881 atactgctag ctaagctttg tttttcgcat acgggactat caccctctat ggctatactt
     2941 tccagaatgt tctgctaaac tcagctcttg cacattgcag tcctacaacc cccagtgcaa
     3001 gcactgggtt tgccctcttg cgctttcgct cgccgctact gacgcaatct ctattgattt
     3061 cttttcctga gggtactaag atgtttcaat tcccctcgtt cgctcctata taggtaatgt
     3121 atatctctat acattgggtt gccccattcg gaaatctacg gatcaaagct tcttgacagc
     3181 tccccgtagc ttatcgcagt ctagtacgtc cttcatcgcc tttaccagtc aaggcatcca
     3241 ccattcgctc ttagtagctt acctttttta ccttttatta ttgattctaa aacgcatcac
     3301 ttccttgtta aagtttttat gataagactt ctttatctta agacggaaag cattcaaaca
     3361 cttaatataa aactaaatga tttagtctca actaagcagt gagtttgaaa cttgtcttta
     3421 atttataatc cttaaatcta atattctctt tattcataga agagaagaca gctaaaagtt
     3481 aagttaaact aaagaaaaga taaataggtt ttatccttta acaagtcctg taaaattgtt
     3541 tttattaaaa cttgcttgtg actcttaaca atgataatta aaaagaacat ttaggtttaa
     3601 aacctaaagg aagtatatat attaacataa tcattataaa tataaatgca taatgtatat
     3661 gctacttata tctattaaag tatattcttt tatagttaaa gataaaaata aatctaagta
     3721 tagagtttat atttaatcta ttttatatac ttgctttaga ttttaaagct tctttattca
     3781 aatctttttt atggtgggcc taacaagact tgaacttgtg acctcaccct tatcaggggt
     3841 gcactctaac cagctgagct ataggccctt aataaatggt ggagaatagc gggatcgaac
     3901 cgctgacctc ctgcgtgcaa agcaggcgct ctcccagctg agctaattcc ccataaacaa
     3961 ttagctttat catcaatctt tgaaatctaa acaagaatca attgagttta tatattgaag
     4021 taatagttgt gagacttatt actttgtact ctagaaagga ggtgatccaa ccgcaggttc
     4081 tcctacggtt accttgttac gacttcaccc cagtcgctga ttccactgtg gacggtaact
     4141 agtttagtat tccggcttcg agtgaaatca actcccatgg tgtgacgggc ggtgagtaca
     4201 agacccggga acgtattcac cgtagcatgg ctgatctacg attactagcg attccggctt
     4261 catgctctcg agttgcagag aacaatccga actgggacat attttataga tttgctccac
     4321 ctcgcggtat tgcgtctcat tgtatatgcc attgtagcac gtgtgtcgcc ctgggcataa
     4381 gggccatgat gacttgacgt cgtccacacc ttcctcctcc ttacgaaggc agtctattta
     4441 gagtgctcgg ccgaaccgtt agcaactaaa tacgtgggtt gcgctcgttg cgggacttaa
     4501 cccaacatct cacgacacga gctgacgaca gccgtgcagc acctgtctct aagttctagc
     4561 aagctagcac cctcttatct ctaaaaggtt cttaggatat caagcccagg taaggttctt
     4621 cgcgtatctt cgaattaaac cacatgctcc accgcttgtg cgggtccccg tctattcctt
     4681 tgagttttaa tcttgcgacc gtactcccca ggcggtacac ttaatgcgtt agctgcatta
     4741 ctgagatgac tagcacccca acaactagtg tacatcgttt agggcgtgga ctaccagggt
     4801 atctaatcct gtttgctccc cacgctttcg cgccttagcg tcagttgagt tccagcagat
     4861 cgccttcgca atgggtattc ttggtgatat ctacggattt tacccctaca ccaccaattc
     4921 catctgcctc tccctcactc tagactatca gtttcccaag cagtttaatg gttaagccat
     4981 tagatttcac aagagacttg ataatccgcc tacgcgccct ttacgcccag tgattccgag
     5041 taacgcttgc accctccgta ttaccgcggc tgctggcacg gagttagccg gtgcttattc
     5101 cttaggtacc gtcagaattc ttccctaaga aaaggagttt acgctccgaa aagtgtcatc
     5161 ctccacgcgg cgttgctgcg tcagggtttc ccccattgcg caatattccc tactgctgcc
     5221 tcccgtagga gtctggaccg tgtctcagtt ccagtgtgac tgatcatcct ctcagaccag
     5281 ttaagcgtca tagccttggt aagccattac cttaccaact agctgatact atatagtctc
     5341 atcctacacc gaaaaacttt ccctactcaa cttgtgttaa gcaggagtat agagtattag
     5401 cagtcgtttc caactgttgt cctcttgtgt agggcagatt aactatacct tactcacccg
     5461 tgcgccacta atccacttct agcaagctag aagcttcatc gttcgacttg catgtattag
     5521 gcacgccgcc agcgttcact ctgagccagg atcaaactct ccataaaaat tatagatagt
     5581 ttaatctttt tcttcaaaga aaaagttatg aaagattaaa agaaaagctt ttaatctttt
     5641 tcattattag attgaataga ttttacataa ttacttatgc ctaaatcttt ctggctcaat
     5701 cgatcactta tttagatttc aaagattgac taataagatt tgaataacaa tactaagtta
     5761 aaagaacaaa acaaaaaatc atttttaaaa gaaaagtttt taaattaaaa aacaagattt
     5821 ataaaaaagc ttttagttta taagataaaa accaaaagag ttaatttata aaatctacta
     5881 agctagtgaa actttataat ttaaaagatt ttaagtcctt ttttcaaaaa aggaaatgaa
     5941 agt
//
LOCUS       DARGEX010000090         5790 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.090, whole genome shotgun sequence.
ACCESSION   DARGEX010000090 DARGEX010000000
VERSION     DARGEX010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5790
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.090"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            14..871
                     /gene="cheP"
                     /locus_tag="SF010_001448"
     CDS             14..871
                     /gene="cheP"
                     /locus_tag="SF010_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG8230349.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMMAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIVNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            899..1378
                     /gene="cheQ"
                     /locus_tag="SF010_001449"
     CDS             899..1378
                     /gene="cheQ"
                     /locus_tag="SF010_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG8230350.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1347..2657)
                     /locus_tag="SF010_001450"
     CDS             complement(1347..2657)
                     /locus_tag="SF010_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230351.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKISIIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2641..2817)
                     /locus_tag="SF010_001451"
     CDS             complement(2641..2817)
                     /locus_tag="SF010_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8230352.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            2910..3383
                     /gene="moaC"
                     /locus_tag="SF010_001452"
     CDS             2910..3383
                     /gene="moaC"
                     /locus_tag="SF010_001452"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG8230353.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRIMDIVLESKEGGKSGKFVRS"
     gene            3361..3624
                     /locus_tag="SF010_001453"
     CDS             3361..3624
                     /locus_tag="SF010_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG8230354.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            3614..4774
                     /locus_tag="SF010_001454"
     CDS             3614..4774
                     /locus_tag="SF010_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230355.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYGYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(4793..5551)
                     /gene="xth"
                     /locus_tag="SF010_001455"
     CDS             complement(4793..5551)
                     /gene="xth"
                     /locus_tag="SF010_001455"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG8230356.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
BASE COUNT         2160 a          789 c          846 g         1995 t
ORIGIN      
        1 ggataaatta aatatgattg gagatatgaa tgagctttta ttaaaaagcg ttgaagtatt
       61 gccaccttta cctgatactg taagtaagtt aagaaaatat gtgagcgagg ctaattcaaa
      121 tatagaaact atgaaagttg ctgaaatcat ttcaagcgat ccgttgatga tggctaagct
      181 tttgcaatta gcaaattctc cttattatgg ttttacaaga gaaattacaa ccataaatca
      241 agtgattact ttattaggcg ttggtaatat catcaatata gttatggctg actccattag
      301 agataatttt aaaatagacg tttcacctta tggtttaaat actcaaaatt ttttaaaaac
      361 gtgcaatgaa gaggcaactt ttatcgtaaa ttggcttaat gatgaagata aaaaactttc
      421 tcatctttta gttccttgtg caatgctttt aaggcttggt attgttattt tttcaaattt
      481 tcttatacaa aatcataagg ataaggattt tttagctttt ttaaataaaa atgaaaatct
      541 tgctttagcg gagaatgaat ttttaggcgt agatcatatt tctttcttgg gatttttgtt
      601 acatcgttgg aattttgatg atgttttgat tgaaagtata tgttttgttc gcactcctca
      661 tgctgctcgc gaaaaagtga aaaaatccgc ttatgcttta gcaataacag atcatctttt
      721 tgctccgcat gatggctctt ctccatttaa cgcaaaagct gcagttgctt tacttaaaga
      781 ggcaaaaact caaggaatta attttgattt aaacaatctt ttatctaagc ttcctaacaa
      841 agctaaggaa aatttaaaca aagaagatta aagagccttt ttaaggctct aaattgtagt
      901 gatgaaaagt ttaatcttac ctcctaatga atttttagat cactatattt taaacgctga
      961 atttcatcgt tttgctggaa tttcaaaaaa tgcttataaa ttttggaaaa atgtagaaat
     1021 aggtagatat caaggaacaa gaattatatt tttgcataga aattgcattt tagaaaaaca
     1081 tcagcaagct ttaaggcaat gtagtggttt aaatggtttt gtattggcaa gtgctttttg
     1141 ttcttttact ggattagctc cctctcattt agtggaaaaa aataattctt ctatttataa
     1201 acttttagag cttaaggaga tttgcgggat taaatttgtt aatttaaaaa aattttatga
     1261 ttttttaggg ctaaattatc atcagcatat ttatatagaa aaatgccatt tttttagccc
     1321 agctcctttt gaaaagcgta ttaaaatcac tgagagtatg tgcgttgggt attattaaga
     1381 taagaaaaaa taaatgcaca tagcaaagct ataatagcca aaaagaaaac ataaagtccc
     1441 aaagaaaaac gccaaaaatt acttaaatta tttaaggcaa aactatgcaa gaaaaaagca
     1501 agttgcggag ttaaacctcc agctatagca taagcaatat tatatgaaaa agaaagtcct
     1561 gaaaatttaa tttttgcatc aaatacttca ctcattatta aagggcaaaa attcatcact
     1621 ccgctaaaaa aacatacaag taaatataag caagctacta ggttaaaatc agcattttgt
     1681 ctatataaag tattaaaata aagcaagctt gcaattccaa aaaaaacact aaaaaataca
     1741 caagatttga taatgcttat tttatccgct aaaattccac ttataataca ccctaggcaa
     1801 ataagtaaaa ttccacctat ttgaagatag gtttgtatag aagtattaat ttgaagtatt
     1861 tttgccatat aactaggcat aagcaaaatc attacaacaa tacaacctgt caaaacccaa
     1921 gtaatcatca tagaaagaac aattcccatt ttagcttttt taaacacttc ttttaaagga
     1981 aatttttcta aagccttgtc ttttttcatt tgttcaaaaa caggagtttc tcttaaaaat
     2041 tttctcaaat aagcagaaat aatcccaaaa attccaccta aaaagaatgg aattctccaa
     2101 gcccattcat gaagttcttc ttgggtataa attttattca taattaaaaa aactaaacta
     2161 cctaataaaa ttccacctac aaccgaagcg gttaaaattc ccaaataagt tcttttttga
     2221 ccttgtggtg cgtgttcgta tacaaaaacc caagctccag ggagttcccc gcctatagct
     2281 ataccttgac aaatgcgtat aaaaactaaa aatacaatgc aaagaaaacc tatgctttca
     2341 taatttggaa taaaagctag agtaaaagtt ggaataacca ttaacaaaat actaatcata
     2401 aacattcttt tacgtccaaa tttatctcca aaatgtgcca gtatcacacc ccctaaggga
     2461 cgcgctaaat atccagctgc aaatattcca taagtattaa acatttgcca aaaactactt
     2521 aaatcttttg gaaaaaagtt tgttgaaata taatttgcaa aaaatacaaa aataataaaa
     2581 tcataaaatt ctaaagttcc acctaatgat gaaagtccta aaacttttat atctttttgg
     2641 ttaagggttt tgttcattct taatctccat ctcataaaaa tcatcatcat tgttatcatc
     2701 atcgtattca taatcatcat catcataatt ataattttta tggtgatttt gtgtatattc
     2761 ttcatcttca ttctcataat catcgtaatt taaatcttct tcatcttcat aagccattgt
     2821 tttctcctta aataaaaata caaagcttat tttatcttaa atttgtttgg ttttgctata
     2881 atttttataa ttttttaaaa ggtgaattta tgaaattaag tcatttagat gaaaaaaatc
     2941 atcctaaaat ggtagatgta agcgataaaa atattacttc aagaatagcc acagctagtg
     3001 gtatgatata tatgagtcaa gaagcttttg atgtaattaa aaacaatacc gcaaaaaaag
     3061 gtcctgttct tcaaacagct attattgcgg ctataatggg ggctaaaaaa acaagtgaaa
     3121 ttattcctat gtgccatcct ttgatgcttt ctaagattga aacagatatt gtggaatttg
     3181 ttaaagaatg tgcatttaag cttattgtaa cagttaagtg tgaaggtaaa acaggagttg
     3241 aaatggaagc tttaagtgga gttagtatag gacttttaac tatatatgat atgatcaagg
     3301 ctatagataa atcaatgaga attatggata tagtgcttga aagcaaagaa ggaggtaaaa
     3361 gtggtaaatt tgtgcgatct taaaaaagaa cctcagatca attatcctac tttttgggat
     3421 tataaggtga tttttgaggt gcatattaag gcaagtgaaa tttttgaaga aattttaggt
     3481 caaagagaat ataaatttga acattcgaat tcaagtgcga gtggaaaata tcaaagttat
     3541 ttgttaaatg tttatgttga tagcaaaaaa gatcgtttgg atatatttga taaattaaaa
     3601 gctaaagcaa aatttgtact ttaagaaaga aggaaaaatg aaaaatactt taattatttt
     3661 tgaaaattct ttatcaaatc tcggtaaaga tgaagcaagt gatttacttg aagacttgag
     3721 ttttaatctt gcgtataagc aaatttcaca taatcctcat gaaacaaaaa aagttttaaa
     3781 ttctcttttg gttgaatttt taactatttt gaaaaaactt gatttttttg atgatgaaaa
     3841 tgttacaaag gttatcaaag ctttggttaa ggcgagtatt gtagatgctc aaaattcact
     3901 ttatgggtat attagcgaag ctgaattatt aaacaaacag attgaaaatc aaaagaattt
     3961 gattaaaaat caaatcagcg ataatttttt tgaattcgag aatattttac aagaatgttc
     4021 tttttgtgat gaatttagtg gcggtttaaa tgatgctatt ttatttgata tagaaatgct
     4081 tggaatttta aaagaaaccg ctgaaagtgc ttttttaact acattagaaa aggctgaaga
     4141 tatagaactt acaagtagtg aaatagctaa aaatcttgta tataatgcca tttgtgaagc
     4201 tcattttgaa aaagaaagaa ttttaaaaat ttcaagtatt attttaaata ccgcttttga
     4261 aatagctaat gaatctatgg cttatgcaaa agatctttgt ttaggcgtga ttaaaggcac
     4321 aagggatggt attgttttgg caatggaaaa atttaaagct tcattaactt atgcaaattt
     4381 tgaagaagat gttagtttaa aaagcaaaga actaataggt atagaagatg attttattgc
     4441 tcttttaaaa aaagagattc aattacaaaa tgatccttgt aagagtatag ttgagaattt
     4501 gctagaacat gaacttgata atctttttgc taaatttaga cgtcttgcag gtgaaagcag
     4561 agagcaacta atattagttt taaatgatat taagaaaaat ccaaagatta atgattttaa
     4621 caaacttact caaagaaaat taaatcgttt taaacaagaa atttttgaat tagaaaaaat
     4681 tgctagtgaa aaatacaaag atttaaattc caaaaaagct aaaaagctcg gtgtaagact
     4741 ttgggaaaaa gcaaaaaaat tcgttaaaaa ataatatccc atttttggga tattaaatat
     4801 ctatttctat acctacaggt gcgtgatcag agccaaaaat atcatctctt atgaaagcgt
     4861 ttttaagttt atcttttaaa ccctttgaaa tgaaaaaata atcaatcctc cagcctacat
     4921 ttctttctct tgctttcatt ctatagctcc accacgagta tttttctttg atttcaccat
     4981 taatttctct aaaagtatct ataaaaccaa gctttagcaa atcatcaatc caagctcttt
     5041 ctataggtaa aaaacctgaa gtgttggcat tggcttttgg atgagtaaga tcgatttctt
     5101 tatgagcggt attgacatca ccgcaaatga taatttcaaa tccatccttt aaaagtttat
     5161 ccaaatacac taaaaaatct gcataaaatt tcatcttaaa atttaaacgc tcttcatctt
     5221 tttgaccatt tggaaaatag atattaaaaa gtgcaatatt tttaaagcgg tgttctaaaa
     5281 ccctaccttc ttcatcatca aaaaattcgc atttttttac ttcgctatta aaattacaaa
     5341 gactcattac cccagaatac cccgctcttt tagcagaatt aaaatacatg tgtttaaaag
     5401 gatattcata aattttttta ggaaatttat cttcatgtgc tttgatttct tgaaaaccta
     5461 taaaatcaat ttgttcttgt gctatccaat caagtgcatt tttatcacaa atagctctta
     5521 agccattgac attccatgaa agtagtttca ttattttcct taaaattttc attaaaagtg
     5581 taaatcataa cataaaaaga tttaaaacta caatccattt aaaaaaattc aataaaatta
     5641 aaagcttaaa tttggaggtg ggatttatat gcttagatta acttggcttc agtttacttt
     5701 ttttaattct ttgatgattg tattgttgaa ttttaattta ttttattttg tgtatgaaaa
     5761 aaatacacaa aactggttta taacttttgt
//
LOCUS       DARGEX010000091         5734 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.091, whole genome shotgun sequence.
ACCESSION   DARGEX010000091 DARGEX010000000
VERSION     DARGEX010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5734
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.091"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..2595
                     /locus_tag="SF010_001456"
     CDS             <1..2595
                     /locus_tag="SF010_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG8230357.1"
                     /translation="FSIILGRTGSGIFALLLLLFSLVLLFPKFAKEILKIELDFTYLL
                     KVEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLNILQDSIYGNLQINKKGETNNLEQI
                     IKDSNINASKNSITTAKENFEKLKNQILDETIEIDKQSLKESRSFVHEHSQQVRNFAQ
                     KASKMSISLDEDFNFISEEEVDMIPERFLKPKKLEDIKQIDTNKNLDEPSYKRKNIEI
                     PVSNQEVKPKIFTKELELRENLIKKEKLEQEYKAYQNEILENKVKQEIKKLEEYDAIN
                     SSDIIEGNKYSFNSPKTIKTETEESDKINENKNLDKADNIFEFAPIVEELNHPYIEPT
                     PIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQEIKLQKAVLAKEIAINQALLREIE
                     QGEVEKPKDFTLPPLDFLANPKEHKQEINESEIDKKIYNLLEKLRRFKIGGDVISTYV
                     GPVVTTFEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIPGKDVVGIEVPNDEIQ
                     TIYLREILQSEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGIN
                     SMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIPHLLTPVITDPKKAVNALSNMVAEM
                     ERRYRLMADAKTKNIENYNEKMKELGGEELPFIVVIIDELADLMMTAGKDVEFYIGRL
                     AQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYKVGQKIDSKVILDAMGAESLL
                     GRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDFLKDQQSVEYDESFLKDQQSVGVTT
                     NESFDGEVDELYEEAKRVILEDGKTSISYLQRRLKIGYNRSANIIEQLTQNGILSEPD
                     AKGQREIL"
     gene            complement(2681..2953)
                     /gene="rpsO"
                     /locus_tag="SF010_001457"
     CDS             complement(2681..2953)
                     /gene="rpsO"
                     /locus_tag="SF010_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG8230358.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            3128..3538
                     /locus_tag="SF010_001458"
     CDS             3128..3538
                     /locus_tag="SF010_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG8230359.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            3525..5699
                     /gene="flhA"
                     /locus_tag="SF010_001459"
     CDS             3525..5699
                     /gene="flhA"
                     /locus_tag="SF010_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG8230360.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTATPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
BASE COUNT         2114 a          791 c         1013 g         1816 t
ORIGIN      
        1 ttttctataa tcttagggcg tacagggagt ggaatttttg ctcttttact tctactattt
       61 tctttggttt tattgtttcc aaaatttgca aaagaaattt taaaaataga attagatttt
      121 acttatttat taaaagtaga gcaagctttt aaatctttac ttatgcgtgt atttggtgga
      181 gaaaacgaga aagaagatgt aggtaaatca gaacctatag ctccaaaatt aaatattttg
      241 caagatagta tttatggaaa tttacaaata aacaaaaaag gggaaaccaa taacttagaa
      301 cagataatta aagatagcaa tatcaatgca agtaaaaatt caattaccac ggccaaggaa
      361 aattttgaaa aactaaaaaa tcaaatttta gatgaaacca tagagattga taaacaaagt
      421 ttaaaagaat caagaagttt tgttcatgag cattctcaac aagtgcgaaa tttcgcacaa
      481 aaggctagta aaatgagcat tagtcttgat gaagatttta attttatttc agaagaagag
      541 gtagatatga ttcctgaacg ttttttaaaa cctaaaaaac ttgaagatat aaagcaaata
      601 gatacaaata aaaatttaga tgagccaagt tataaacgta aaaatattga aattccagtt
      661 tctaatcaag aagttaaacc aaaaattttt acaaaagagc ttgaacttag agagaatttg
      721 ataaaaaaag aaaaactaga acaagaatac aaagcctatc aaaatgaaat tttagaaaat
      781 aaagtaaaac aagaaattaa aaaattagaa gaatatgatg cgataaattc aagcgatatt
      841 atagaaggga ataaatatag ttttaatagc ccaaaaacaa ttaaaacaga aacagaagaa
      901 tcagacaaaa taaatgaaaa taaaaatcta gataaagcag acaatatctt tgaatttgct
      961 cccattgtag aagagttaaa tcatccttat atagaaccta ctcctataaa aaatataaat
     1021 gaaatagtta tagaagaaaa aaatacactc gattttatcc aaaatacaga aactaaaatc
     1081 gataatgaaa aaacaaatga tcaagaaatt aaacttcaaa aagcagtttt agccaaagaa
     1141 attgctatta accaagcttt attgcgtgaa atagagcagg gcgaagtaga aaaaccaaaa
     1201 gatttcacct tgccgccatt agatttttta gctaatccaa aagaacacaa acaagaaatc
     1261 aatgaaagtg aaatagataa aaaaatttat aatcttcttg aaaaattgcg tcgttttaaa
     1321 ataggcggcg atgttataag cacttatgtt ggtcctgtgg taactacttt tgaatttcgt
     1381 cctagtgcag atgtgaaagt aagtcgtatt ttaaatttac aagatgattt aactatggct
     1441 ttaatggcaa aatcaatccg tattcaagct ccaataccag gaaaagatgt tgtaggtata
     1501 gaagttccaa atgatgaaat tcaaaccatt tatttaagag aaattttaca aagtgaagtt
     1561 tttaaaaacg ctaaaagtcc tttaaccata gctttaggta aagatatagt aggcaatgct
     1621 tttgtaaccg atcttaaaaa acttccgcat ttactcatcg caggaacgac aggtagtggt
     1681 aaaagtgtgg ggataaattc tatgctttta agtcttttat atcgcaactc tccaaaaacc
     1741 ttgcgtttga tgatgataga tcctaagatg cttgaattta gcatttataa tgacattcct
     1801 catcttttaa ctcctgttat cacagatcca aaaaaagcag tcaatgcgct ttcaaatatg
     1861 gtagctgaaa tggaaagacg ctatcgctta atggctgatg caaaaaccaa aaatatagaa
     1921 aattacaatg aaaaaatgaa agaattaggc ggagaagaac ttccttttat tgtagtaatt
     1981 atcgatgaac ttgctgattt gatgatgact gcgggtaaag atgtagaatt ttatatagga
     2041 agacttgcgc aaatggcaag agcaagtgga atccacttga ttgtagctac acaacgacct
     2101 tctgttgatg ttgtaacagg actaattaaa gcgaatttac caagtagaat ttcttataaa
     2161 gtagggcaaa aaattgactc taaagttatt ttagatgcta tgggtgctga aagtttactt
     2221 ggaagagggg attgtttatt tactcctcct ggaacaagct ctatagtgcg tttgcatgcg
     2281 ccttttgcaa gcgaatttga aatagaaaaa atcgtggatt ttctaaagga tcaacaaagc
     2341 gtagaatatg atgaaagctt tttaaaggat caacaaagcg taggtgttac aacaaatgaa
     2401 agctttgatg gggaagtaga tgagctttac gaagaagcta aaagagtaat cttagaagat
     2461 ggaaaaacaa gcatttctta tttacaacgc cgtttaaaaa tcggctataa ccgctctgca
     2521 aatattattg aacaacttac gcaaaacggg attttaagcg aacctgatgc caaaggacaa
     2581 agggaaatct tgtaagattt ttcttgtgtt tttgatatat aaaactgatt acaaaagaag
     2641 aaatttaaaa ggcaaaagcc ccgtaaaaag ggcttaaaaa ttatttatct ctaagattta
     2701 attcagtaat taacttacta taagaattat aatcttttct tttaagataa gataaaagtc
     2761 tttttctttg acctacaagt tttagaagtc ctaatcttga tgaaaagtct tttttgtaga
     2821 tttttaaatg ttctgtaagt tctgcaattc ttgcagttaa aagagctact tgaacttctg
     2881 ttgaaccagt atcacctggt tttttagcga atttcgcaac tatttctgct tttttggccg
     2941 aatccaaagc catgatagac ctcctgattg gtaaaataat aaaattaaag aactgtaatt
     3001 ttatcttaaa aagcaaaaaa taaactgaat ttatcttttt tagaaggttt tgtcaaaatt
     3061 taagtctttt tctaagaatt atttattata attacagcta tttctgtagt tataacaagg
     3121 agaatctgtg ctatttacca aagctagcga atacgcttta ctttctttaa tttatatttc
     3181 tcaaaaagaa acacctcaag atgtagattc tttagcttta gagcttgata ttcctaaaag
     3241 ttttttagct aaaattttac aaactttagc taaagatggc ttgttaaaat cttttaaagg
     3301 ggcaaaaggt ggttttgttt taatcaaaga accaagtcaa tatactataa aagaaattgt
     3361 taatagtgct gaaaaaaagg atatcagtgt atttgaatgc agtggtggca cttgtccaaa
     3421 taataaagaa gaaaattgca ccttaatgcc tatgttagta aatttacaaa ataaagtaga
     3481 tgaattttta gattctatta ctttagaaga tattatgaaa aataatggca aaaaataaaa
     3541 tagtcgattt agtttttcct ttcttggggc ctttaatcgc tcctgtttta aaagctaaaa
     3601 gcttgactat tgttggtttt ttagtttgta ttttagctat tattatagtt cctttaccaa
     3661 gtcctatttt ggactttttc ttggctttaa gtatagcttt atcggtatta attattttaa
     3721 tttctattta tatacccaaa ccgacagatt taacaacttt tccaacttta atcttgatta
     3781 tcactttatt taggctttca ttaaatatag ctaccacaag gatgatttta agcgaagggc
     3841 aaaacggccc tgaagctgtg agtgagatta tagcagcatt tggagaattt gttgttggtg
     3901 gaaatatggt cattggcgtg attgtatttt gtattttagt attgattaat ttcatggttg
     3961 taacaaaagg tagtacaagg gtttctgaag tacaagcaag atttacactt gatgcgatgc
     4021 cgggtaaaca aatggctatt gatgcggatt taaatgcagg acttattgat gaacaaaccg
     4081 ctagagcaag acgtcaagaa gttattgctg aggcaaactt ctatggtgca atggatggtt
     4141 cttctaaatt tatcaaagga gatgctgttg caggaattat cataactatt ataaatatca
     4201 taggtggttt tttaatagga tcttttcagc acgatatggc tttaagcgat gctgcttcta
     4261 cctatactat tttaaccata ggtgatggac ttgtatctca aattccaggg cttattactt
     4321 ctactgcaac cgctataatt atcactcgtg caagcaaaga tgaggaaaat tttgcagaag
     4381 gaactttaac tcaactttta agcgaatatc gcacgctttt aatagtaggt tttgtacttt
     4441 ttatctttgc gttagtgcct ggtttgccaa ctttatcctt gggctttatg gctttagtat
     4501 ttttaagcct tggctatctt accaagcagg ttaaggaagg taaaattgat ataactacag
     4561 ttaaaaaaag caaaccaagt gccgcagctg catctcaaag tggagcaggt gggacaacgg
     4621 caacgcctgc taagaaaagc gaagaagaaa ttctcaaaga agaagagcac aagattaacg
     4681 atatactcaa agttgaaatt ttagaacttg aacttggata cggacttatt aagcttgctg
     4741 aaaacgaact tacagaaaga attcgctcaa tgagaagaag tattgctgaa agtttaggat
     4801 ttttaatgcc aaaaataaga ataagagata atttaagact taaaccaaat gagtatagtt
     4861 ttaaactcaa gggcgtgtct atagcaagtg ctgaaattta tccggataaa tatttagcca
     4921 tggatagtgg ttttatcaca gaagagatag aagggattgc tacaaaagaa cccgctttta
     4981 actctgatgc actttggatt gatgcgaatt taaaagatga agcaacatta aatggctata
     5041 tagtaataga tcctgcaagt gttatttcaa cacatatgag cgaacttatc aaagcgcacg
     5101 caagcgaact tctcacacgc caagaggtac aaaatcttct tgataaggtt aaaaatgatt
     5161 atccaatcat cgtagaaggt gctttaggtg tcgcacctgt aagtcttatt caaaaaattc
     5221 tcaaagactt gcttaagcat cacataccaa ttaaagatat gcttactatt ttagaatctg
     5281 taagtgatat agcagaagta agcaagagtt ttgatatgat tattgaacat gtaagggcgt
     5341 ccttagctag gatgattaca aatatgtatt tagatgataa aggaaatttg gatattttta
     5401 tcttagactc tgctagttct gcggttttaa tggaaaatgt acaatttaga gatggaagtt
     5461 atcacttgcc tttaagtgtg gctcaaacag gcactttagt agatactcta agggctgaag
     5521 ttgccgcggt agcaaatggt cgtatcaagc cttttatact ttgcgttgaa ccgcagctta
     5581 gaaaattcat tgctgatatt tgttataatt ttagcattaa tatagtagtg ttaagttttg
     5641 cagaaattgc agaaaataca aattttaata ccgagggtat tattaggata gaactttaag
     5701 gaatataatg aaaatttatc atctttcaca taca
//
LOCUS       DARGEX010000092         5726 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.092, whole genome shotgun sequence.
ACCESSION   DARGEX010000092 DARGEX010000000
VERSION     DARGEX010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5726
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.092"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1494)
                     /locus_tag="SF010_001460"
     CDS             complement(<1..1494)
                     /locus_tag="SF010_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8230361.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYSYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKNFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIIIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLES"
     gene            complement(1491..2378)
                     /gene="htrB"
                     /locus_tag="SF010_001461"
     CDS             complement(1491..2378)
                     /gene="htrB"
                     /locus_tag="SF010_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG8230362.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAIAIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(2368..3396)
                     /gene="waaC"
                     /locus_tag="SF010_001462"
     CDS             complement(2368..3396)
                     /gene="waaC"
                     /locus_tag="SF010_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG8230363.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNVVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFSLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3463..4257
                     /locus_tag="SF010_001463"
     CDS             3463..4257
                     /locus_tag="SF010_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8230364.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYEDELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLRSKKSDRSYTEVFAKACESEISKVRS"
     gene            4315..5301
                     /gene="galE"
                     /locus_tag="SF010_001464"
     CDS             4315..5301
                     /gene="galE"
                     /locus_tag="SF010_001464"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG8230365.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            5295..>5726
                     /gene="pglK"
                     /locus_tag="SF010_001465"
     CDS             5295..>5726
                     /gene="pglK"
                     /locus_tag="SF010_001465"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8230366.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLS"
BASE COUNT         1876 a          786 c          884 g         2180 t
ORIGIN      
        1 gctttcgagc atttttttgc tattttcttt gtgataaata tgataagcaa tagctttaaa
       61 ttttaagcgt ctaaaaatgc ctttattaaa taaaaatcta gcaacaaatt cactatcttc
      121 tctaccccaa ccaataaaat tttcattaaa accatcaagt ttatcaaaat cagttttaaa
      181 aaaactcata ttgcaacccc taataccttt aataagagtg gtttttttaa agattttttc
      241 atcttttttt gaaagactgt aaagcatttt agctaaaaaa gaatttttag aacttttaaa
      301 atctttttta ttaaaagcta tacgataatc atctttgttt aaaatttctt cgctttcttt
      361 ttcatttaaa attactcttg aaccttgtaa aaaaagtctt ctttgtgcaa attctaaatg
      421 ttcttttatg aaatcttttt ccaaaatcat atcaccatca ataattatta tatattcact
      481 atcagcgttt tttatagttt tgttgcgact tttactaagc ctaaaccctt catcttcttg
      541 ccaaatgtgt tttaaagggc aaggaaaatt tttttgatat tcttcaataa gccttgctgt
      601 atcttctttg ctaccatcat ctgcgattaa aacttcattg ggtaaaaagg ttagattttt
      661 aacactatca agcactaact taaggcgttc tttttgatta taggttgtta ttattaaagc
      721 acaagttttt ggcttttgct tttgaagttc atataatttc atatatttaa aaaaagtccc
      781 taaggcatta caaacgctaa ttataaaacc cttataacta tacaaaaagc cattttttaa
      841 aaaataattt ctaaaaaaag tccaaaaagc tcttaaattt gcttttaaaa caccactttt
      901 tttgtgtata ttttgttttg cccaaaggct tgagtagtgc tgcattttat taattaagtg
      961 agaaatatct ctaaaagcat gatgctttaa tccattttta agatgaattt ttttaacatt
     1021 acttggtaaa acaaggcttt cgtgtactaa attatcatta aaacgagtga aatttttatt
     1081 aaaaattctt aaaacataat caggccacca accacatgcc tttatccatt cgcctttata
     1141 gagattttta cgactaagtg cgatgatatt atcttcttga agttctaaat ttttaagctc
     1201 tttaatacac tcattttcaa gcacttcatc agcatcaatg cttaaaatcc aatcattttt
     1261 tgcataactt aaagcaaggt tttttaaagc tccaaaacct ataaaagcac tgtggtaaat
     1321 gtgcaaatta gcaaaatctt ttttaaattc attagctata tttagggtat tatcactact
     1381 ttcattgtta agtaaaataa tttcatcaaa atcttttaaa gaatttaaac attcaagcaa
     1441 ggtttgtttt gcatttttta caatgataat aacacttatt tgctttagat tcattttgca
     1501 tccttgtaaa tttccttatt ataacttgca aagcgtctat gaaaaaaaaa gtattcccaa
     1561 ggtctttttt taatcatttc ttcgcaactt tgcgcttgat aaagtgtcag ttcttctaag
     1621 cttgcatttt gagaatcttt tgctttaaaa aactctatgc aaaatttacc atcttcttta
     1681 taggcataaa cagggatgat caaagcattg cttctttgtg cgataaggct tgctcccatt
     1741 tgataattca cttctttgtt aaaaaatttt aatcttacgc tttcgttttc tgcgcagtct
     1801 tgatcggtta aaattcctaa agttctccct ttttttagag cgcttagcat ttgtcttatg
     1861 ccgccttttt tgtcgataag ttctatgtca aattgggtgc gactttggct taaaatttca
     1921 tacataattt cactttttaa ctttttccct actatagcaa tcgcaccata tttagccgca
     1981 taagcaaggc ttaaaatttc ccagtttcca tagtgtgcag ttgtgaagat aataggacga
     2041 tttaaagcta gagcgtctat aagtaaattt tcattgatga aatttacttt attgagaatt
     2101 ttttctttgg tggtgttttg attttgcaaa caatcaattc caaattgagc aaaattttca
     2161 taaattttca aagacaattt atcgcgttct ttttgagtgt attgagggaa gcagatttgc
     2221 aaatttgtat cgatgatttt gcgatgtttt ttgttaagat aaaaagtgat tcttgctaca
     2281 attaaagcta aaaaatgcaa gatacactca ggcataaaag taacaaaaaa tttcaaaata
     2341 taataaagac taagatatat tctatcacta tttttcatta agtaagcctt tggcaagttt
     2401 gaagatatct tcttcttcta tacgcgtgat acaaaaatca cttttatcga tatgcttggc
     2461 attttggatt tttttacctg catcaatgat tttattgata tgagtttgaa aagcattgcg
     2521 gtagcttggt gttgcaccaa aaatcgtaat agatgcttta tttaaagcaa aagccaaatg
     2581 tgttggacca ctatcatttc ctatgataag attcatcatt tttgtaaaag ccattagctc
     2641 ttcaaggctg aattttggtg ctaattctat atgtgtttca tcaataccac taagatttaa
     2701 aacctctttg gcaaattcgt attcttttac atttccccaa gcgagccaaa tttttgcttg
     2761 ttgaaattca ttgattaaaa gtttgcaaag tatagcaagt ttggttttag gatagatttt
     2821 attttctaca cttgaaccca cgtgtatgag tatgtttttt tcgtttttgt cgagcttgag
     2881 tttattgttt aagagttgtt ttaaattttc atctacgcta aaaatatctt gtttaaaggc
     2941 taaatttttg acattaaaat cagtatttaa cataaaggag gtaagactta agtatcttac
     3001 aaatacattt tcattgtaat ctaactcaag tttttggttg tagaaattat gagcaaaact
     3061 ttctttaaga ctatttttat caaaaccaaa attatttcta cttaaaattc gacttacaat
     3121 agcagatttt ataagccctt gtagatctat tactacatta tagttgtttt ttcttgcttt
     3181 aagaagaatt tttaggcttt ttaaaatttt tttgtctttt aagggcaggg catagagttt
     3241 gtctattaaa ggatggtttt taagtatgcc ttcaaatttt tcatctacaa accaatgaat
     3301 ttctatatct tttttaaaat ttttgataaa ttgcaaaacc acggcacttt ggataatatc
     3361 accaagtgct gacaaacgaa caattgctat tttcattaaa agcctaatat tttaaaattt
     3421 ttgctatgat tttagcgaaa ttatttaaaa aaaggttaaa aaatggcaaa aaatgaaggt
     3481 tatatttgtg tttttgattg tgagagtgtg ccagatgttg agcttatccg caaaacttta
     3541 ggttttgaag gaagtgattt ggaggtaagt ttaaaagcac ttcagtggca aaaagaacaa
     3601 agcgggagtg agtttttgcc tttgccttat cataaaatca tcagtatttg tgcggtttta
     3661 agcgataatt ttggaaaatt tatcaaagta aataaaattg atgggcaaaa tgaaaaagaa
     3721 atgattgaga attttttcaa ttttatagaa aattatgagc caaaattagt cagttttaat
     3781 ggtaaaaatt ttgatatgcc tgttcttgtt ttaagggctt taaaatacaa tttaaaagca
     3841 gcaacttatt tagatactca aagtgataaa tggaataatt ataaaacaag attttcagaa
     3901 ttaaaacatt gtgatttatt agaatcctta ggatctaatg ggcgtggaat aaagcttgat
     3961 acactttgct ctatggtggg tttgccagga aaatacgatg tgcatggtga tgaggtgatg
     4021 aaactttttt atgaagatga acttgaaaaa atccacgaat attgtgaaag tgatgtttta
     4081 aacacctata tgcttttttt aaaatatgaa cttattaaag ctaatgttag tgaagaagat
     4141 tatgttgatt ttctttctta tatgagagat tttttgcgtt caaaaaaatc agatcgttct
     4201 tatacagaag tttttgcaaa agcttgtgag agtgaaattt caaaagttcg atcttaagta
     4261 tttaagaaaa tatattaaaa tttatttttg acattttcaa aaaaaggaat gatgatgaaa
     4321 attcttatta gcggtggtgc aggttatata ggttctcata ctttaagaca atttttaaaa
     4381 acagatcatg aaatttgtgt tttagataat ctttctaagg gttctaaaat cgcaatagaa
     4441 gatttgcaaa aaataagagc ttttaaattt tttgaacaag atttaagtga ttttcaaggc
     4501 gtaaaagcat tgtttgagag agaaaaattt gacgctattg tgcattttgc agcgagcatt
     4561 gaagtttttg aaagtatgca aaatccttta aaatattata tgaacaacac tgttaataca
     4621 acaaatctca tcgaaacttg tttgcaaact ggagtgaata aatttatatt ttcttcaacg
     4681 gcggccactt atggcgaacc acaaactccc gttgtgagcg aaacaagtcc tttagcacct
     4741 attaatcctt atgggcgtag taagcttatg agtgaagaag ttttgcgtga tgcaagtatg
     4801 gcaaatcctg aatttaagca ttgtatttta agatatttta atgttgcagg tgcttgtatg
     4861 gattatactt taggacaacg ctatccaaaa gcgactttgc ttataaaagt tgcagctgaa
     4921 tgtgccgcag gaaaacgtga taaacttttc atatttggcg atgattatga tacgaaagat
     4981 ggcacttgca taagagattt tatccatgtg gatgatattt caagtgcgca tttagcggct
     5041 ttggattatt tacaagagaa tgaaagcaat gtttttaatg taggttatgg acatggtttt
     5101 agcgtaaaag aagtgattga agcgatgaaa aaagttagcg gagtggattt taaagtagaa
     5161 cttgccccac gccgtgcggg tgatcctagt gtattgattt ctgatgcaag taaaatcaga
     5221 aatcttactt cttggcagcc taaatatgat gatttagagc ttatttgtaa atctgctttt
     5281 gattgggaaa aacagtgtta aaaaaacttt tttttatttt aagtaaggaa gataaaaatt
     5341 ttttattttt cttgcttgtt ttttcagtat ttatttcttt tatagaaact tttgcaattt
     5401 ctttggtaat gccttttatc actttggcta gtgatttttc ttattttgat cgtaataaat
     5461 atttaatcag cctaaaagaa tatcttaata tccctgtttt tgaaatcatt gtttattttg
     5521 gagtggggct tattgttttt tatgtgttta gagctttgtt aaatgcgtat tattttcatc
     5581 ttttggcaag attttctaaa gggcgttatc atgcgatcgc ttataaggtt ttttctaaat
     5641 ttttaaatat taattatgaa aaatttactc aaaaaaatca atctgaaatt ttaaagtcca
     5701 ttacagggga agtttataat ctaagc
//
LOCUS       DARGEX010000093         5704 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.093, whole genome shotgun sequence.
ACCESSION   DARGEX010000093 DARGEX010000000
VERSION     DARGEX010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.093"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..823
                     /locus_tag="SF010_001466"
     CDS             <1..823
                     /locus_tag="SF010_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8230367.1"
                     /translation="GRRIEKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKT
                     KDKILKNTQKNKKQSDKITLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDK
                     KLKKELLEKISRQSVKLNALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERV
                     ALQGKSTKVKADEFLIEQVIINLLSNALKYSQKKVILTARDQKIIVQDFGKGIEEDKI
                     KLITKKFYKIDVKSDNSFGLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            827..2758
                     /locus_tag="SF010_001467"
     CDS             827..2758
                     /locus_tag="SF010_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8230368.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNREKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(2787..2861)
                     /locus_tag="SF010_001468"
     tRNA            complement(2787..2861)
                     /locus_tag="SF010_001468"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2827..2829),aa:Gly,seq:gcc)
     gene            complement(2872..2958)
                     /locus_tag="SF010_001469"
     tRNA            complement(2872..2958)
                     /locus_tag="SF010_001469"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2922..2924),aa:Leu,seq:caa)
     gene            3140..5392
                     /gene="flgL"
                     /locus_tag="SF010_001470"
     CDS             3140..5392
                     /gene="flgL"
                     /locus_tag="SF010_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG8230369.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNSQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            5502..>5704
                     /locus_tag="SF010_001471"
     CDS             5502..>5704
                     /locus_tag="SF010_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230370.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKKYKIE
                     NFKRRELFGFSLAFFSTLLLFSV"
BASE COUNT         2201 a          760 c          979 g         1764 t
ORIGIN      
        1 aggtagaaga atagagaaaa attttaataa aattttggat tttttggatt ctatagggga
       61 tcataaagtt gttatattag aaaaaggaat gtttaaagaa tttaatttac taaatgagaa
      121 acttttaaaa actaaggata aaattctaaa gaatacccaa aaaaataaaa aacaaagcga
      181 taaaatcact ttaaaaaata ctcagcttgc tagcgtgatt tctgctattt ctcatgagct
      241 taaaaatcca ttaagcgtga ttgatcttag cttagagatg ctaaaagatg agaaattgga
      301 agataaaaaa ttaaaaaagg aattactaga aaaaatttca cgtcaaagcg ttaaacttaa
      361 tgctttaacc cataagctta attttgtttt taatcttaat agtgaagcct tgcagatgca
      421 agaattcgat cttttttctc tatgtgaaaa aatcactaaa aacccaggct ttgaaagagt
      481 tgcattgcaa ggtaaaagca cgaaagttaa ggctgatgaa tttttaatcg agcaagtgat
      541 tataaatttg ctttctaatg ctttaaaata tagtcaaaaa aaagtcattt taacggcaag
      601 agatcaaaag ataatagtgc aagattttgg aaaaggcata gaagaagata aaataaaatt
      661 gattacaaaa aaattttata aaattgatgt aaaaagtgat aattcttttg gtttgggact
      721 ttttttagta aagaaaattt taaatataca taaaagttat cttgaaattt ctagcacttt
      781 aggttatggt tctagtttta gctttaaact cagtcaagga taaaaaatgg ctcttataga
      841 tttaattgaa gcttcaaaaa aatttggaga caaaatagtt ttaaatgaag taaattttag
      901 cgcaaacgag ggagaaaaga ttgctattat aggcaaaaat ggagaaggaa aatctacttt
      961 tttaaaaacg cttttaggca cacttccttt agatagcggt agaataataa gacaaaatgg
     1021 aaaaagcata gccatgcttt cacaaaccgt tgattttaat gcaaatttaa gcgtaaaaga
     1081 agccatcaag caagagcttg tagaaattta caatacctta gaagaatatg aaatactgca
     1141 taaaaaatta gaagaagatc ctagtaataa agattatctt caaaaaatag atacgcttat
     1201 gactttgatt gatagtaaag atgcttggag tatagaatct aaaataatac gcgttttaaa
     1261 agaatttagt ttacttgagt atgaaaatcg cattatatct actttaagtg gtggagaaat
     1321 acgccgcgtt gggctttgca tacttttact aaaaaatcct gatattttat tgcttgatga
     1381 accaactaat catttagatg tatatatgac aagctttttg gaagaattgc taaaaaattc
     1441 aaagatgtgt gtgattttta tttcccatga tagatatttt attgacgcta tagcacacaa
     1501 gtgtgtagaa gtagagcagg gtaagcttag tatttttaaa ggcggatatg caaactattt
     1561 agagaaaaaa acacaaattt tgcaaagcct tgctaagagc catgaaactc ttttaaagca
     1621 attaaaaagc gaagaagaat ggcttagaag aggggttaaa gcaagactta aaagaaatga
     1681 aggacgaaaa gaacgcattt ttaaaatgcg tgaagaagcg aaaaaaaatc ctggggcaat
     1741 caaacgctta aaacttgaaa tttcaagagc ggctttaaat tttaatagag aaaaaacgat
     1801 caatcgtaaa aaaatgcttt ttgagcttaa aaatataagc aaaaatataa acaataaaaa
     1861 tctttttaaa gatttttcaa cgcgtatttt acaaggtgaa cgcatagcta tcgtaggaag
     1921 aaatggttgt ggaaaatcaa cattgttaaa aattcttcta gggcaaataa aacaagatag
     1981 cggtgaaata aaacgcggag agcttaagat aggatatttt gatcaggcta gaagcttggt
     2041 aaattctgat aaaagcttgc ttgaaatttt ttgtcccaat ggtggagata gggttgaagt
     2101 tcgtggtaaa aatatgcatg tttatggata tttgaaaaat tttctatttc ctaaggaatt
     2161 tttagataaa agcgtggctc ttttaagtgg cggagagaaa aatcgcgttg ctttagcctt
     2221 gctttttact aaagaatatg atgttttgat tttagatgag ccaactaatg atcttgatat
     2281 agctacgatt aatatattag aagaatactt acttagtttt gaaggggcta ttttgctagt
     2341 atcacacgat agatattttg ttgataaaat cgcaacaaaa ctttatgctt ttgagggaaa
     2401 tggatatata aatattttac acactcttta tactgaatat cttgaaaatg aaaaagaaat
     2461 tgaagaattg gataattttg ctttagagct tcaaacccaa gagcaaaata ataaccaaaa
     2521 agaaaaaagc tccaaaaaat tgagctacaa agaaaatgag atattaaaaa accatcctga
     2581 aaaaatagat tttttagagc aaaagatagc taaattaaat caagatttat ccgatccaaa
     2641 tgtatatcaa gaaataggta ttaacaagct ttatcaagag cttgaagtaa tgcaaaaaga
     2701 acttgaaatt ctagaaaatg agtatttttt agtattagag aaaagcgaga atttataatt
     2761 aaagagattt tatatttttt attctatgga gcgggaaacg agattcgaac ccgcgacccc
     2821 aaccttggca aggttgtgct ctacccctga gctattcccg caaaaaataa gtggtgcccg
     2881 aggtcggact cgaaccgaca caaggttgcc cttaccagat tttgagtctg gcgcgtctac
     2941 cagtttcacc actcgggctc attttataag atttaaagct aaaattatac ttttttaggc
     3001 taaaaaatac tttaaaaata aaaagtattt tcaaaaagac aatataaaat tatataattt
     3061 aaatttttgg aacagttatt gcttttgttt attagcaatg tttgaaaaga ttttaacttt
     3121 aatactttag aggaaaaaaa tgagaattac aaataaactt aacttcacaa atagtgtgaa
     3181 taattctatg ggcggtcaaa gtgctttata tcagatatct caacaacttg cttcaggttt
     3241 gaaaatacaa aattcatatg aagatgcaag cacttatata gataatacgc gtcttgaata
     3301 tgaaattaaa acattagaac aagtaaaaga atcaacaagt agagctcaag aaatgactca
     3361 aaatagtatg aaagctttac aagatatggt taaacttctt gaagatttta aagttaaagt
     3421 aacccaagct gcaagcgata gcaattctca aacctcaaga gaagctatag caaaagaact
     3481 agaacgtata aaagaaagca tagttcagct tgcaaatacc agtgttaatg gtcagtatct
     3541 ttttgcaggt tctcaagttg caaacaaacc ttttgattct aatggaaatt attatggaga
     3601 taaaaataat attaatgtag taactggagc tggaactgaa agcccataca atataccagg
     3661 ttgggattta ttttttaaag cagatggaga ctataaaaaa caaataagca ctaatgttag
     3721 ttttacagat aatcgttggg atttaaataa agaccctgat aaaactaaat atctcacagg
     3781 agattctaaa tggcaacaac ttatcggaca aggttatgta aaagataata gcttagatgc
     3841 tgacaaagac tttgagtatg atgatagcaa actagatttt cctccaacaa ctctttatgt
     3901 tcaaggtaca agacccgatg gaacaagttt taaaagtgct gtactcgtca aacccgaaga
     3961 tactttagaa gatgtaatgg aaaatattgg agctctttat ggtaatactc caaataataa
     4021 agtagtagaa gtaagtatga atgatagtgg tcaaattcaa attacagatc taaagcaagg
     4081 taataataaa ctcgattttc atgctgtagc tttcacacca caagctgatg ataaaactga
     4141 attaaataat attatccaag cagcacagga tgaaggcatt acaatggaag atgttacaaa
     4201 cagggttatg actgctgcac taggaaatcc caataatgga gatattacaa atttaaataa
     4261 tcctgtaacc attcaaatta acggacaaaa ctttgaaatt gatttaaaac aaactgattt
     4321 tatcaaaagt aaaatgacag atacagatgg aaatgctgct aatggagctg attacgataa
     4381 tgtgtatttt gaaaaaaatg gcaatactgt ttatggtaat gtttctcaag ttatcaaagg
     4441 aagcaatgct tatgccactg attcaaccaa acttagcgag gtaatggcag gagatagcct
     4501 aaatggtact actttaaatt taaaagtcaa ttccaaaggt ggaaattctt acgatgttac
     4561 tataaattta caaacttcaa ctgtaagcta tcctgatcct aataatccag gtcaaaccat
     4621 aagctttcct attatgcata ctaatcctgc aactggaaat agtggggttg ttacaggatc
     4681 aaatgatatt acttatggtc aaattaatga tattataggt atgtttgctg cagataaaat
     4741 tcctacaaca accatacaag ccaataatag tcaaattaat aatgcagatt atacccaaat
     4801 acaacaactc atgaaagatt cacaagctac tgttgatgta agtatggatt ataaaggtcg
     4861 tattagtgtt actgataaac tttcatcagg aaccaatata gaaatttctc ttagtgattc
     4921 tcaaagtggc caatttccag cacctccttt taccacaact tctactgtac aaaatggtcc
     4981 aaattttagt tttagcgcga ataattcttt aactatagat gaaccaaatg tggatattat
     5041 taaagattta gattcaatga ttgatgctgt tttaaaaggc aatatgagag cagactccga
     5101 aagtgaaaac cctagaaata caggtatgca aggagcttta gaaagacttg atcatttagc
     5161 agatcatgtt agcaagctta atacaactat gggagcatat cataatacta tcgaaggtgt
     5221 taatacacgc acatcctttt taagcgttaa tgtccaaagt ataaaatcaa atgtgattga
     5281 tgtagattat ggtgaggcaa tgatgaattt aatgcaagtt caacttgcat atcaagcttc
     5341 ccttaaagct agtacaacaa tttctcaact tagcttatta aattatatgt aaaatttttt
     5401 atggtataat ttggctttga ttttattttc aaggaaagaa tattaaaaaa gaagccattt
     5461 ttaccagctc cacgcttgtt attttttatc tttgtctttg tatgctagca cctggcatgg
     5521 gagaatgggt ttacaaggct aatttatttt tatttggaga atttgggtat tattatccat
     5581 tttctttgct tatattaaat tatctctact ataaaaaaaa atataaaata gaaaatttta
     5641 agcgtaggga gctttttggt ttttctttgg cctttttttc taccttgctt ttattttctg
     5701 tctt
//
LOCUS       DARGEX010000094         5660 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.094, whole genome shotgun sequence.
ACCESSION   DARGEX010000094 DARGEX010000000
VERSION     DARGEX010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.094"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..446)
                     /locus_tag="SF010_001472"
     CDS             complement(<1..446)
                     /locus_tag="SF010_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8230371.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYE"
     gene            complement(446..1270)
                     /locus_tag="SF010_001473"
     CDS             complement(446..1270)
                     /locus_tag="SF010_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230372.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTKNQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(1281..1757)
                     /locus_tag="SF010_001474"
     CDS             complement(1281..1757)
                     /locus_tag="SF010_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230373.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1766..2257)
                     /locus_tag="SF010_001475"
     CDS             complement(1766..2257)
                     /locus_tag="SF010_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG8230374.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(2247..3182)
                     /locus_tag="SF010_001476"
     CDS             complement(2247..3182)
                     /locus_tag="SF010_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG8230375.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(3185..4354)
                     /locus_tag="SF010_001477"
     CDS             complement(3185..4354)
                     /locus_tag="SF010_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG8230376.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(4364..4969)
                     /locus_tag="SF010_001478"
     CDS             complement(4364..4969)
                     /locus_tag="SF010_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG8230377.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(5089..5301)
                     /locus_tag="SF010_001479"
     CDS             complement(5089..5301)
                     /locus_tag="SF010_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG8230378.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            5461..>5660
                     /locus_tag="SF010_001480"
     CDS             5461..>5660
                     /locus_tag="SF010_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8230379.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLI"
BASE COUNT         1917 a         1028 c          611 g         2104 t
ORIGIN      
        1 ctttcgtata attgaatacg cgcaaattca tcttttaaat attctaaata atctgcataa
       61 gcctcttgtt tctcaaaatt taaacgaggt tttgcttcta aaaattctaa aaaatattca
      121 cttagactaa gctcactttg caataaggca agagttaatg tttgagtttt attattttct
      181 aaacttttaa aaaaactcga attttgattt acaaaacctc tttcgataag tttttttaaa
      241 tcctccaaag catcaagata aagatactta tcatttccaa aaattgtcga taataaagta
      301 aaggcattga tagaagaaat agaaacgaca taatttctac aaagttctct aagaatcaaa
      361 gcctcatttt tagcacactt aagctcttta taaatttgag tatcttctat atttttcaaa
      421 cttaaaaaat tttttaattt ttccattatt ttttaaattc cttaagctca tcttcgttaa
      481 attctacgca aatattttca tctaaaaaat gaccttcaaa aggtagataa caaattttta
      541 gttttccatt attaagcaaa aaattattat taaattgtaa attttgcaga tcttcaaaac
      601 actcatcaca tgtattttta agcttctcat gtaaaagatt ttgaaatttt tgatttttag
      661 tattatacaa atcatttagt tttacaaatg cgtgagcatt aatatcataa acaaaattat
      721 ttaactctaa aatagcacgg ctcataccat cttcataaaa ataataccat tcttcaaaac
      781 taatttttcc atcttgtaaa aaaataggct tttggcgaat ttgttcaaaa ctaaatacac
      841 tcttatgaac aggatgaaat tctttaaaat catcattaaa acctataaaa tcaagactac
      901 gctttatacg aatgccatct tgcgtttcaa caagttctaa agtagttgtt cctaaatttt
      961 ctccttgaaa atttttatta tcatatgtaa gcattttaga agaattgatt ttatattttt
     1021 tacgctcatc ctgccaaaaa tcatttgtct taacgagcgg aatctctaaa tttccattta
     1081 tatcatcaat aattaaaaaa ctagaacttg tttgattttt atccctgtca aaaagtggag
     1141 tcataggcgc attatcataa actatggcaa aaatttcttt atcctgcaaa tgataaaaat
     1201 acaattcacc tttataaact tgcgctaaag ctagatttac aaagcaaaat accagtaaaa
     1261 aaaatttcaa actctatcct ttaattttga atatgcgtta agataatttt agtatgtgaa
     1321 attttatcaa aaaaacttac tttattatca caaacttgat aaaaaatttc ataatttttt
     1381 gcttttaaat tttgttcaaa accacaatca gttttttcta aatttttacc ctgccataaa
     1441 gcatttgcct ttaaaatatc acttaaaata tcatcataat atacattttt aaaaaatttt
     1501 tgattaaaca cttttttatc ataacacact gcattgatac aaattttatc tttgattttg
     1561 agttcaaaaa aagcttgccc tagtttataa acttctaaat ttaaagcatt attttctttt
     1621 tttaaaaaag ctgcgtcatt gatttttatc ataggagaag caatcaaaac catcaagctt
     1681 tgactcgaaa aattttgatt tttcacacta caagcacaaa gaaaaaaaat aaaacacaga
     1741 gctaaacaat gcttcaaatt tgaccttatt taagattttt aaaactgata tttaactcta
     1801 aatcaagctc ttttacaagc ttcatcacag cttgtaaatc atcaatttgt tttgctacaa
     1861 cacgaatttc ttcaccacga atcgaagaat taactttaag tttgctatct ttgatagctt
     1921 tattgatttt tttggcattt tcactatcaa tagcatcgtt tgctttcaaa tttaaacgaa
     1981 acattgctcc actttcacga gaaagctctt taatagcatt aggattaatt cctcttttga
     2041 taagtttaga aatcactata tcttttaaaa catcaagctt tccttcacta gaagaactga
     2101 gtttaaaaat actctctttt tcgcttaaat caatctcaca cttaattcct tttaagtcat
     2161 aacgactatc aagttctttt ttagcttgtt caaaagcatt ttttaactct tgtttatcta
     2221 aagctgctga aatatcaaaa ctatgttcac ttgccatttt ctatccattc ttttaaatta
     2281 ttataaacta tatccattaa agcatttaaa gcctccttgc tcgcccacgc aacatgagga
     2341 gtgataataa gattttcttt atttttaatg cttaaaagtg gatgattttt catcataggt
     2401 tcaatttcta aaacatcaag ccctacacga atattttttt catctatgat tttagctaaa
     2461 tcattttcat tgacaatccc acctcttcct acattaatca aaatcgcatt atcttttaaa
     2521 agctttaatt cttcaaaggc gagtaaattt ttggtttttt catttaaagg tgcgtggata
     2581 cttataatat cgcaagtttt taataaatct tttaattcca aatgtacaaa atctgcgttt
     2641 ttattagctc cactcgtaga ataataataa atttcggctc caaaagcctt tgaaattttt
     2701 gccacttctt tacctatggt tcctaaacct ataataccat gttttttgcc acttaaggtg
     2761 tttaaaattc tactataatc tgtaaaaata ggactttcac accatttacc ctctttgctc
     2821 catttgtcat aataaagcac ttgatttaaa aaagcaaaca taaacgcaaa agtatgttgc
     2881 accacactca tagtagaata cccagcagca ttttttacaa taataccttt ttctttagca
     2941 tactcaatat cgatattatt aacccctgta gcagtttcca aaatgagttt taaattttta
     3001 caagcatcaa tcacatcttt atcaattaca accttgtttg tcatggcgac attagcatct
     3061 tttaaacgct ctatggtttg ctctttattt gttgtggtat aaatttgcaa agaaccaaat
     3121 ttttcaaaaa cacttaaatc ataatcccct aaagttgccg catctaaaca aacaattttc
     3181 atttctaatc ctttataata tgtcctacaa atttagaata attatcaagc acaagtcctc
     3241 cttttctaaa tcctaagcca cacccttcat aagcaaagaa aacacctgct tgatagtatt
     3301 cgttttcaca tgaattaaac tctacatatt cttgataaat agccttatta ttcccataag
     3361 gacctacatt ctcatgcaaa gtttttccat ctttaattat actgatattt gcaccttctc
     3421 taccaaaaac aggtttttta acatagtttt taccttccaa aggagtatct tttgtttcta
     3481 aaagtaatgg atgatttgga taaagttccc atagaatttt taaaattccc ttagattgaa
     3541 ataaaagcgt ataagcagga tttaaaataa ttgctctttg attacgcatg atttgagtta
     3601 aaagcatagc aagttcaccc tcttctatgg ctatatcttc ccaaggaata agcttaaacc
     3661 aatactcata attttcaccc tctttaaaaa ttccttcttc actaaattct acctcatcta
     3721 caaaggaaaa attagtttga aaacctgctt cattggctat atgtgcaagc aattttgtag
     3781 tgatttcctc ttctttactt cctgcaacac ttgaaaaaag aattttccat ccttgataat
     3841 gctcttcaaa cccttcaaca ctttcatcaa gggtaataag tcttttaaaa ttatccatca
     3901 aactttcata aatgctgtta aattgtgcgc tttcatccat tccattttgt tttaaaagtg
     3961 cccattgtaa aatcgcactt tcaaaaagag cagtaggggt atcagcatta aattctataa
     4021 gttttatagg cttgccatca agtccacccg ctaaatcaaa acgcccatat aaatgccaat
     4081 gaacctcatt ttcccaactc atcttaatcg catcaataag attaaaagga attccaagct
     4141 catcaaaacg atcattatta atcacttctt gcgctgcagc aataaacata tcataaagct
     4201 catttaccgc ttcataataa gcattagctt cactttcctt aacacaaact aacttattgc
     4261 taatataatc acttccatct tcatctgtat gccaagaaaa acctatattt tctaaataat
     4321 ctttttgaag tttgtctact tgtaataatt gcattattta tccttaagag ccaaaagaag
     4381 aactagaact tgtggcttta gagcctccac caaaaaaacc tgatttttta gcacttgaag
     4441 cagagcttgt tgtgcctgct ttattaaaac tattaacact cctttgataa gcactttgat
     4501 ttgaaaaagc accgcgttgt tggttggcaa aattttgatt attgaaaagt tttgaaccta
     4561 tccaacttcc taaaatagca cctgcagcac ttgcgagtaa agtttcccct aaactcaatc
     4621 ccccactact gatttgtcca ttgtctttag ttaaatttga agttccatta tcaattttag
     4681 ctgcttcttc tttaatcaaa gcatccattt cttctttgga taaaattctt tctgtaccat
     4741 taagatcttt taaaactacc cttgtttcat cacttggata ttgatctttg attttatact
     4801 gccctggagc tgtttcttcg ataattacaa aagctccttg agcattagct gcttgattta
     4861 aagtatctgc attgtcatta ttacttccac aacctgctaa agcacctcca gcaacagctg
     4921 ctaaaccacc tatcatacca atttgaatga tttttttgat ttttttcata agtttatcct
     4981 aaaaacagaa aatttaaatt agaaatttta acaaaaaata ataaatactt tttaatttaa
     5041 taccaaatga agtttgtaga tataaaaaag ccctttcggg cttttgggtt agagtcttga
     5101 ctcgtagcgt ctaagcatat aaagtctttt aagcattttt ttgcgtgctg aaattttttg
     5161 ttttttgcga atttcagtca taggctcaaa aaatcttctt gctcttactt cagtcacaac
     5221 tagatttcta tctacttgtt ttttgaattt acgatacgct tcatcaaaag actcgttagg
     5281 atgcaccttg attcctggca cagtcctcac cacctttctg tgtaaatttt tgttgtgaaa
     5341 tataattata aaacacttct tattaattct aacttagaaa gcatttaaaa attgttttag
     5401 tttttatcgg ttataatcct taattacaaa gtgctaaaaa attataatta aggtctaaaa
     5461 atgcaaggac acattacaaa ctatacaaaa aaacgatatt ttgtatattt aattgcaagt
     5521 attatcatat tttccctacc tttcataaga attaatgaga atcatttttt tcttttaagt
     5581 tttgatcatt ctaaattaaa cctatttttt atttcttttt caacacaaga attttatctc
     5641 atgccttttg ttcttatatt
//
LOCUS       DARGEX010000095         5605 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.095, whole genome shotgun sequence.
ACCESSION   DARGEX010000095 DARGEX010000000
VERSION     DARGEX010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5605
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.095"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            39..1058
                     /locus_tag="SF010_001481"
     CDS             39..1058
                     /locus_tag="SF010_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230380.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNNTFNTSISE
                     NNQSLNNNTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1081..3693
                     /locus_tag="SF010_001482"
     CDS             1081..3693
                     /locus_tag="SF010_001482"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG8230381.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3698..4708
                     /locus_tag="SF010_001483"
     CDS             3698..4708
                     /locus_tag="SF010_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG8230382.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNVKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4705..>5605
                     /locus_tag="SF010_001484"
     CDS             4705..>5605
                     /locus_tag="SF010_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8230383.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKG"
BASE COUNT         2185 a          766 c          942 g         1712 t
ORIGIN      
        1 ctaaaattat ttaactttct gtttttaagg gatagcaaat gaatttgaaa attttttcta
       61 ttattgttgg catattaatt gctgttattg tgatattagg tggaacatat tattatcttt
      121 ttgaatattc aaaaccaaag aattacacct taaataccaa cacttacacc gaacaaaaat
      181 cgtataccaa taactacgat aattcctatt caccctcgat ccaaaccaac aatagttcat
      241 cagatataaa tattaataac aataccatcc aaaagcaaga aacaaaccta ttagatgaaa
      301 atcaaagctt aaataacaat acatttaata catcaataag cgaaaacaat caaagcttaa
      361 ataataacac caatacaagt aataatatta atacaaatga aaataagcaa attttagata
      421 cggataaaga aaaattaaaa caagaaaata aacaagccaa aatagaagct cttaaaaaag
      481 aaatcagcaa acaacaaaag atcttagaaa gagaaagagc tgtaaaaaaa gaacttcaat
      541 caaacaaatc aaacaaaaat aaatatctaa ataccgctag agagtatcta agcataggaa
      601 aaaacagtcg tttagaacct gagcttagca cagaaaatat gaaagtttac attttagatg
      661 gaaaattttt aagccaatac agaatcaatc tgttaaaaga tatgctaagc gttatacaag
      721 ataatgcaaa agattattat ctaagtattt ttgttaaaat gctaccaaaa ggggaaatga
      781 aattaactat ctataacaaa gaaattatct tttcagatat gaaaaaagct tataaatata
      841 ttagtttaga tagattaagc ccatatttaa acaatccaaa agaattaaat gaacatgtag
      901 cacgtgaaga aattttagaa agacttaaac ttcaaattaa aaaagacggc aaaggaagtg
      961 atttttctaa acatatcaaa agtttgaaaa ctggacttaa tacagcacaa tatttcttcc
     1021 cgttttgtga aattatagaa attagctcta ttaaataagc taaaacaata aaggcaaata
     1081 atgtatgata aaaatttaga aaaagagtat tatcaaattt gcgaagaacg cggatatttt
     1141 gaaatcgatg gcaataaaac catacaagaa aaagataaaa atttctgcat tatgatgcct
     1201 cctcctaatg tcactggagt tttacacata ggacatgctt taacttttac tctgcaagat
     1261 attatgacgc gttacaaaag aatggatggc tataaggttc tttatcaacc agggcttgat
     1321 cacgcaggta ttgccactca aaatgttgta gaaaaacaac tccttgctca aggcattaaa
     1381 aaagaagaac taggtagaga gaaatttata gaaaaagtct gggagtggaa agagcaaagc
     1441 ggtggaaaaa ttttagacca aatgagaaca ctaggcatca ctcctgcatg gagtcgcttg
     1501 cgttttacta tggatgaagg tttggttaat gccgtaaaaa aagcctttgt agaactttat
     1561 gataaaagac ttattgtacg tggaaactac atgataaatt ggtgtaccca tgatggcgct
     1621 ttaagtgata tagaagttga atacaaagaa aacaaaggaa aactttatca tattaaatac
     1681 tttttaaaag atagcgatga atttttagta gtagccacaa cgcgtcctga aacttttttt
     1741 ggcgatactg cagttatggt gcatcctgat gatgaacgct atactaaatt tgtggacaaa
     1801 gaagtgattt tgcctataag caaaaaagcc attaaaatca tagccgataa acatgtagaa
     1861 aaagattttg gaacaggagt tgtaaaagtt actcccgctc atgacatgaa cgattatgaa
     1921 gtaggactta gacataattt agattttata agtgtttttg atgaaaaagg aattttaaac
     1981 gagcattgtt tagagtttca aggtttagaa cgcttagaag caagagaaag aatcgtagcc
     2041 aaacttaaaa gtcttggttt tatagaaaaa atagaagagc ataacaatca aataggatat
     2101 tgttatcgtt gcaacaatat agttgaacct tatatctcca aacaatggtt tgtaaaaaaa
     2161 gaaatcgccc aagaaagtat agaaaaagtt gcgcttggag aaagcaaatt ttacccaaat
     2221 cactggataa atagctttaa tgcttggatg aaagatttaa gagattggtg tatttcaaga
     2281 caactttggt gggggcatca aattcctgtg tattattgcg aatgctctca tgaatgggca
     2341 agccaacata cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa acaagatgaa
     2401 gatgtacttg atacttggtt ttcttcagga ctttgggcta tgagtactct aggctgggga
     2461 aatgaaaatt ggggtaaaga taaaatttgg tctgaaaagg atttaaaaga tttttaccct
     2521 aattctttac tcattacagg ttttgatatt ttatttttct gggtggctag aatgatgttt
     2581 caaagcacta atgccttaca tcaacttcct tttaaagata tttatttaca tgctcttgtg
     2641 aaagatgagc aaggtagaaa aatgagtaaa agccttggaa atgtcatcga tccaaatgaa
     2701 agcattaaag aatatagtgc tgatatttta cgctttactt tagcacttct tgctatacaa
     2761 ggacgcgata ttaaacttag caatgataaa cttttacaag ttagaaattt tacaaataaa
     2821 atttataatg ctacaaatta tctgctttta aatgaaagta aatttgaaga tttggaaaat
     2881 atcacacttc attcagaatt agcaaaatat atttatgcca aatttcaaac ttgtgttaag
     2941 gatgtaagag aaaatttaga caattatcgc tttaatgatg cagccaatac tctatataaa
     3001 ttcttttggg atgatttttg cgattggggt atagagctta gcaaagccga aaaatcgagc
     3061 gttaaagaac ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc tttcatgcct
     3121 tttatcagcg agtatttata ccacaaacta agcgatacag aacttaaaac aagcccttct
     3181 attatgataa gcaaatatcc aaaatttaaa gaacaagata aaaatataga aaaaatcttt
     3241 tctttgctca tagaaagcat agttagtatc cgccgtgcta aaagtttaat cgatcttgga
     3301 aattctaaaa tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa agatgaaatc
     3361 aaagcttata tgaattttat cataatgctc gcaaagtgcg agcaaataga atttagtgaa
     3421 gaaaaattac caaaggcaat atgtgatgtt agcgagaatt tagaaatttt tattacgctt
     3481 gaaaatgttg atttaagtgg tattttaaca agacttgaaa atcaaaaaaa taagcttgaa
     3541 aaagaaagtt tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc taacgcacct
     3601 aaagaggtgg tggagcaaaa taaagaagct ctagaaaatt taaaaattca acttgaaaaa
     3661 atatcagttg aacttcaaaa tctaagaggt taaaaatttg ataaaaataa aaaatttaaa
     3721 aaaatattat ggcaaggaac tcgtgataaa cgatgtttct ttggagatta aaaagggtga
     3781 aatttacgcc atagtaggtc atagtggagc tggaaaatcc actcttttaa gatgtattaa
     3841 tggacttgag aattatcaag aaggaagttt aaaagtcttt gatcaagaaa ttaaagattt
     3901 aagtcaaaaa aaatcaaaag agttaagaat gcttagaaaa gatataggga tgatttttca
     3961 aaattttgcc ctaatggagc gcaaaaatgt atttgaaaat gttgctatgc ctttaagaac
     4021 acactatact cagtgtaaat ttcatgccaa gctttttaat aaagaataca tgagcgaaaa
     4081 agaaattgcc caaaaagtca attccttact tgaaatcgta gggcttgatc ataaaaacaa
     4141 atcctaccca agagaactga gcggagggca aaaacaacgc gttgctattg ctagagcctt
     4201 agctttaaac ccaaaaattt tacttagtga cgaagctact tcggctcttg atccaaacac
     4261 tacaaaaaat attttagagc ttatatctaa aatcaatgct gaatttggga ttactgttgt
     4321 tttagtaact cacgaaatgg atgtggtaaa agacatagct caaaaagctt tattacttga
     4381 acatggacaa atcataggaa gtggagcaat tgatgagctt tttttaaggc ctaatgtcaa
     4441 aatgaaagaa tttttaggag aaagcgactt cttgcctgag cacggactta atatcaaact
     4501 ttactttcca aaagaagttg cccaaaatag cgtcatcact catatggcaa gaactctaaa
     4561 tatagacttt aacatagttt ggggtaaaat agaaaaactg aatggaaaag ccttgggaaa
     4621 tttagttata aatataaatg aaaaggataa agacaaggtt cttgattaca tagaaaaaag
     4681 tggagtatta tgggaggtgg catcatgaat gaagaaaaca tctctattgt cagtgctttt
     4741 tttagtagaa tttctcaatt ttttaatgaa ttttcttggc aggatattaa agaagtgagt
     4801 ttaagttcta tcacgagttt caatgaaaat tatgaaaaca ttttaaaacc tgcacttaat
     4861 gaaacaattt atatgagttt aatggctgta ctatttggat ttttattggc tatcattcct
     4921 ggaattttac ttgctatttg ggataaaaat ggaattaaag aaaataaaat cgcttatagt
     4981 attttagatt ttattaccaa tatattacgc gcctttccat ttttaattct tatagttgtt
     5041 cttttaccac tttctaaaat catagtaggc acaagcatag gtacaaatgc tgccatagtt
     5101 cctttagcta tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc ttttaaagaa
     5161 atagacaaag gaatcataga agcagcaaaa agttatggtg ctagcaatat tcaaattatc
     5221 ttcaaggtta tctttagtga ggcccttcct gctataatta gcggaattac cctaactttg
     5281 atctttacca ttggtttttc tgctcttgct ggaactgtcg gtggtggagg tttgggagat
     5341 gtcgctattc gctatggtta tgaaagattt aacaaagaag ttatgattca aactgtagtt
     5401 attttactta tattagttca gttagttcaa attctaggta atttatttta tacttgggct
     5461 aaaaatagta aaactacata tatcattgcc actctattga ttttacttgg agttagtata
     5521 gttatcaata taaacaatga tgaaaatttc ttttggcaag taattgtttt tatcttattt
     5581 ttaggaagtt tgctttataa aggtt
//
LOCUS       DARGEX010000096         5549 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.096, whole genome shotgun sequence.
ACCESSION   DARGEX010000096 DARGEX010000000
VERSION     DARGEX010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5549
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.096"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1109
                     /locus_tag="SF010_001485"
     CDS             <1..1109
                     /locus_tag="SF010_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8230384.1"
                     /translation="LNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVS
                     EDSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLS
                     QSSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQL
                     DVLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQES
                     RFIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYL
                     ESRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVL
                     ANYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(1006..1491)
                     /locus_tag="SF010_001486"
     CDS             complement(1006..1491)
                     /locus_tag="SF010_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230385.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            1587..2078
                     /gene="mobB"
                     /locus_tag="SF010_001487"
     CDS             1587..2078
                     /gene="mobB"
                     /locus_tag="SF010_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG8230386.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            2080..2922
                     /locus_tag="SF010_001488"
     CDS             2080..2922
                     /locus_tag="SF010_001488"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG8230387.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            2915..3112
                     /locus_tag="SF010_001489"
     CDS             2915..3112
                     /locus_tag="SF010_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230388.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            3122..5008
                     /gene="metG"
                     /locus_tag="SF010_001490"
     CDS             3122..5008
                     /gene="metG"
                     /locus_tag="SF010_001490"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG8230389.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            5012..>5549
                     /locus_tag="SF010_001491"
     CDS             5012..>5549
                     /locus_tag="SF010_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230390.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLY"
BASE COUNT         2074 a          797 c          862 g         1816 t
ORIGIN      
        1 atttaaatac aagtttagtc aataaactac caaaccacat tggttttaaa gattttgcac
       61 aaaatattat tattaaaaaa gaaaatccaa aatttagata ttctatgcta gaaataaatc
      121 ctgaaaatgt aagtgaagat tctgctttct atttaggagt caatgcctta acttatgata
      181 aaacagagct tgcttatgac ttttttaaaa aggcggcaca aagttttaaa tcgcaaagta
      241 ataaagacaa tgctatattt tggatgtggt tgattaaaaa caatgaagaa gatttaaaaa
      301 ctttatcgca aagttcttct ttaaatattt atagtcttta cgcaaaagaa cttaccaaca
      361 caccttttcc aaagatagaa agccttaatc caagcaagaa aaaaaataat tttaatatgc
      421 aagatccttt tgcttggcaa aaaataaaca aacaaattcg cgatgctaac gcaagtcaac
      481 tagatgtctt ggcaaaagaa tttgacacac aagaaacctt gcctatttat gcttacatat
      541 tagaacgcaa aaataatttt aaaaaacatt attttataat gccttattat gacaatataa
      601 aagactataa caaaacaaga caagctttaa ttttggctat tgccagacaa gaaagtcgtt
      661 ttattccaac tgctatttca gtttcttatg ctttaggcat gatgcaattt atgccatttt
      721 tggccaatca cataggggaa aaagaattaa aaattccaaa tttcgatcaa gattttatgt
      781 ttaaacctga aatagcatat tactttggaa actatcatct aaattacctt gaatcacgtt
      841 taaaatctcc actttttgtc gcttatgctt ataatggcgg tataggattt actaaccgta
      901 tgcttgcaag aaatgatatg tttaagacag gcaaatttga acctttcttg tctatggaac
      961 tagttcctta tcaagaaagc cgaatttacg gaaaaaaagt tctagctaat tatattgtgt
     1021 atcgacatct tctgaacgat agtataaaga tttcggatat ttttgaaaat ttaattcaaa
     1081 acaaggcaaa tgatctaagc aaatcttagc tacaagccta atctcttcct tgacactagg
     1141 aagagatgct ttaaaataat cagtatagtt gttttgtatt atatatttta aatactcatc
     1201 atccaatttt tcaatattgg cttttttatt attgataaaa acttctaaat tttgaatttt
     1261 taatgtattt ggagtaaaag ataaagctaa tacatcatct ttacttgtct tgtctagaat
     1321 tgggtttaaa taagacatag ttataatggc attaatctta tcttgtgtga ttttgtattt
     1381 ttgagtaaac attaaagttt gagattttaa atttgtatcc acaatcgcct gatcttttaa
     1441 agaacaagct ccaagcaaaa aagcacctaa aattacacta taaattttca ttctttttcc
     1501 atatttttta gtattattgt agccttttaa ccctattttt tggtttaaaa agatataatt
     1561 ttgcaaaaaa attaagagta tattttatga aacaacttat tatagctttt agcgggcctt
     1621 caaattcagg aaaaactaca ctcataacca aaatagctga taattttttg caacaaaatt
     1681 taaaagtttt aatcattaaa catgatcctg ccgataaagc tcaatttgat tttaacggta
     1741 aagatagttt taaatttttt caaagtggag ctgaagtcat ggttttaagc cctacaagaa
     1801 caactttttt ttctcatgaa aatagagata ttttaaaagc tttaaaatta agccctgatt
     1861 ttgacatttg tttggttgaa ggattaaaaa ctcttgattt accacgcatt agcgtatttt
     1921 gcaaagaaat tgatgaaagt tattttattt tttcaaacgc cattgcaagc tatgaaaaaa
     1981 tttctcaccc ttatcttact tggcttgatt taaacgatat acaagctatt tgccaataca
     2041 tacttaaaaa tgctaaaaat ttacaaggag aattataaaa tgcaagaagt gatttcttat
     2101 atacaaaaag cggttttaga aatttctaac gctttaaaat ttcccgatac aagctacagt
     2161 caaaatcaaa attttacagg cgatacccaa ctcaaatttg atgttttaag cgatgaaatc
     2221 atcacaaaaa ctctaagtca atgttcaagt attaaagcca tcataagtga agaaaaagac
     2281 gaaattttaa cgcttaacga gagggcaaat tttatcgtag cttatgatcc tttagacggt
     2341 tctagcttaa tggatgttaa ttttgccata ggttctattt ttgctatcta tgaagaaaaa
     2401 gcaagtgcta aaaatttaag agctgcgctt tatagtatgt atggagcgcg attagaactt
     2461 gtgatttgca aagatcagcc aaaactttat cgcttaaatg caaataatga atttattttt
     2521 ataaaagatc ttaaaatgaa tgaaaaaggc aagattaatg ctacaggcgg aacgcaaaaa
     2581 ttttgggaag aaaaacacgc taaatttatc aaaagtcttt ttgatgaagg ctatcgctta
     2641 agatattctg gagccatggt aagcgatatc aatcaaattt tattaaaagg gggtggcatt
     2701 tttagctatc ctgcaacaca agatgcgcct aatggcaaac ttcgtgcctt ttttgaagtc
     2761 tttcctctag cctttatcat agaaaaagca ggcggaaaaa ctacaaatgg aaaaaaccgc
     2821 tctttgcttg aacttgaatt tgataaaatc catgcgacaa ctccttgttt ttttggctca
     2881 gaatatgaaa tttcaaaact tttaaaggct tacaatgaat gaagttagag atgaatttga
     2941 gcaagatatg gataaaaaaa aagaaatttt actttcatgt caaaactcaa aaaacctaaa
     3001 ctcttgttat aattgcgatg aaatttttaa ctgccaaact agaaaaaatt atgttgatgc
     3061 agtctataac agtatgtcta agggtaaaac cgaaggcgga tttgactttt aaaggaaaaa
     3121 aatgcgttat attacaacac caatttatta tgtaaatgat gtgcctcatt taggtcatgc
     3181 ttatactacc atcatagccg atactttagc aagattttat cgtttgcaag gacatgaaac
     3241 aagatttcta acaggaacag atgagcatgg acaaaaaatc gaagaagctg ccaaactaag
     3301 aaattccact cctcaagaat acgctgataa aatcagtttt gaatttaaaa aattatggga
     3361 tgaatttgaa atcacctatg atatttacgc aagaacaact gatacaaggc atattgaatt
     3421 tgttaaagct atgtttttaa aaatgtggca aaaaggtgat atttataaag atgaatacga
     3481 aggacactat tgtatttctt gtgaaagctt ttttactcaa agtcagctta ttaacgattg
     3541 ttcttgccca gattgtggca aacaaactag aattttaaaa gaagaaagct attttttcaa
     3601 actttcaaaa tatcaagata aaattttaca atggtatgaa gaaaaagatc ccatcttgcc
     3661 aaaaaacaaa aaaaacgaac ttataaattt tgtccaaaac ggccttaaag atctttccat
     3721 tacaagaaca agttttgatt gggggattaa actgcctcaa gaaattaatg atgataaaca
     3781 tattatttat gtatggcttg atgcactttt tatctatgta agctcacttg actttcaaaa
     3841 caagggggaa aatgctaaat tttggcctgc gcatgtgcat ttagtaggaa aagatatctt
     3901 gcgttttcat gccatttatt ggccagcttt tttaatgagc gtggatttgc ctttgccaaa
     3961 atttataggt gcacatggct ggtggactaa agaaggtgaa aaaatgagca aatctaaagg
     4021 caatgttgta aaacctaaag aagtggttga tatctatgga agcgaagctt ttagatattt
     4081 tttacttaga gaagtgcctt ttggtaacga tggggatttt agcgaaaata tgctgataaa
     4141 tcgtatcaat gcagagctta gcaatgaatt tggaaattta cttaatcgca ttataggtat
     4201 gagtacaaaa tattctcaag gaaatatttc aaaagaaggt gttttaaaat ttcacaatgt
     4261 tgaattaaat caagcaaaag aacacttaaa tttagcggta gaatttttag aaaacttaca
     4321 gtgtaatcgt tatttagaag aactttttaa agccttaagt gtagcaaatt tagctattag
     4381 taaatacgaa ccttggaatt taatcaaaga aaacaaacac gaacaagcta acgctttagt
     4441 tgcactttgt gcaaatattt tagccaaaac aagcctttta ttaagcccta ctctaccaaa
     4501 gtcttgtcaa aaggtggcct tagctttaaa ttttgaaatt tcatctacaa attatgcaaa
     4561 aatgatactt gataataaac ttttagattt taaagcaaat ccttgcgaag ctttatttcc
     4621 aaaagtagaa aaagctcttt taaaacaaga aattaaagaa gaacctaaaa aagaagaaag
     4681 tcctaaaata aaaatcgatg attttgcaaa aattgaaatc aaagtcgcta aagtgcttga
     4741 ttgtcaaaat atagaaggga gtgaaaaact tttgaaattt caactcgaac ttgacgataa
     4801 agaaatccgt caagtactct caggcatagc aaaatactat aaagccagtg atttaatcgg
     4861 taaacaagtt tgcattataa gcaatcttaa aaaagctaaa atttttggac atgaaagcga
     4921 tggtatgata ctttctgcaa aaagcggaga taaacttgtt ttaatcaccc ctgaacaact
     4981 tgtacaaaac ggttctttag tgggttaaaa tatgcaaatt agcaatttag gcgaactttt
     5041 aaacgcgaca ctcattcatg aaggtagcgt tttaagcgtg gaaggttttg ccataaattt
     5101 aaatgaactt aaagcaggct ttgccttctt taataacgat aaaaaagaaa ttacccaagc
     5161 tgtaaaaaaa ggcgcttatg ctataattac agaaaatgac attactattg aagataaaga
     5221 cattttttac tttagagtag aaaatctaga acaagctctt gtaagatttt tacgcttttt
     5281 ttgcgaagat aaagaatgtg aatttttgct ttttaaatct tacgaactaa gtctttgtaa
     5341 ggctttttat tttaacattt taaaaggaaa tatttttgct gattttgaaa aactaatcaa
     5401 agcaaaaaag ggtgaaattt tttgctactg tgaagaaaat tacttaaata aactttgtgc
     5461 ctattctcat agtctaaaag atgctaattt taccttatta tcgcgatcta gcttcttttt
     5521 tacaactttg atttgtgaaa atttatatt
//
LOCUS       DARGEX010000097         5443 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.097, whole genome shotgun sequence.
ACCESSION   DARGEX010000097 DARGEX010000000
VERSION     DARGEX010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.097"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..630)
                     /locus_tag="SF010_001492"
     CDS             complement(<1..630)
                     /locus_tag="SF010_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8230391.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAI"
     gene            complement(695..1144)
                     /locus_tag="SF010_001493"
     CDS             complement(695..1144)
                     /locus_tag="SF010_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG8230392.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(1271..2491)
                     /locus_tag="SF010_001494"
     CDS             complement(1271..2491)
                     /locus_tag="SF010_001494"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG8230393.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2485..3309)
                     /gene="galU"
                     /locus_tag="SF010_001495"
     CDS             complement(2485..3309)
                     /gene="galU"
                     /locus_tag="SF010_001495"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG8230394.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(3391..5364)
                     /gene="acs"
                     /locus_tag="SF010_001496"
     CDS             complement(3391..5364)
                     /gene="acs"
                     /locus_tag="SF010_001496"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG8230395.1"
                     /translation="MLNQNNQELFKPSKEFSCNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYISPTAIRMLHADAPDEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDVIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1766 a         1030 c          694 g         1953 t
ORIGIN      
        1 gatagcttga taaacactat cttttgaagt ttttaatctt tttttgagtt ctataaatat
       61 cttagaaata ctgatttgct gacccaaatt taaagctaaa tactttaaaa tttctaattc
      121 taaaagagta aagctttgtc ttagaagtat gtttttttct ccaaatttac tgcgtccact
      181 ttgcaaaaaa agacctacta aattatttat aggtaaattt ttcttactta cactaataaa
      241 ttcttcaaaa tcaaaataat caagttcaag ctcttcaaac ccatttacat ttaaatcttt
      301 tatatttgta cttaagatga tgggaatgtt aattttttct aaattaggga taaaatccaa
      361 attataaagg caaagaattt taatttgtaa attttcattc agaaaatcag caagtctttc
      421 taaactttgt ttttcaaagc gtgtatcata taaatctaaa aacaaaattt cacttgcttt
      481 aaattgagat aaaaaattaa aaataagtgt ttttttacca caaaatcgtg ggccttttat
      541 gataatattt ggttttgaaa tttgattttt tctttcataa cttacttcaa atttagggtg
      601 gttttcataa aaaaaattaa gtactttcaa ttttatcctt taaaaaagga tattataacc
      661 tagtttgtat aattggggca taaagcccct taaattacat tttgcaagca ccttgtaaag
      721 tagcgcctat catccaaaga cttttttcat attttgcgat attttcttgt gcaaaagcag
      781 ctgttgtagt atcactttct ttttctgctg cttcattgag ttttttaaat tctgctaaaa
      841 gatattcata atcttgtttg atcagttcta tgacttcaag cggagtaaag caatcttttg
      901 caacttttgg actttttgca ttttccatta aaactttttg gcaagtgata gctttttcgc
      961 caagttgtaa aactctttca gcacaactat caaaaagttc tgccatttct tcataagctt
     1021 tttctgtgta ctcgtgtata gaaaaaaatt gcaaaccttt tacattccag tgataattat
     1081 gaaatttaac ccatagatga tgagcatctg cttgcatttg taataattgt tttgtaactg
     1141 acatgattga ctcctttttt taatttttaa aattataaca taaaattctt aaataataat
     1201 tattattaat taaaaatttt tattataatt ttaacttaaa attattatac tcttttttaa
     1261 tgaattttga ttaagaattt aatatatttt ttaagatcaa ctttccaact tccacaccag
     1321 gttgatcata ggtgttaatc cctagcataa caccgcaagt tgaagtaaaa agttcataat
     1381 aatacatcaa atatcccgca tgccaagcat caagtttttc aagttctatc acatcaacgc
     1441 tcaaattttc agcgattaaa gcgtgcatag ttgcattaca ttgagcgttt aaaagttcgt
     1501 gaagattgac tttattactt aaagaatcta aaaatttaaa atgaatatca gggataatag
     1561 gtgctttttg agcgtctttg atttttaaaa aagttacagt tttattttta ggtccatcca
     1621 taatgagttg taaaaaacta tgctgatctc ttgctccaat gagtgcaata ggagttaaac
     1681 ctatacgttt atagccttgc tttttaccta aactttcagc aataagctgg atataccatt
     1741 cattaaagcc tttaaaagca tcactatatg aaaaaagtac attgatattg gcatttttgt
     1801 gtgtgcaata atgataggct ttttgtaaaa tttcatcttt tttatgagta aaaaaatctt
     1861 caaaacaagc tttagctcct tctaaaagag ctttggcatt atagccacaa aaacaaagcg
     1921 gaactatacc tacggctgaa agtatgctaa aacgacctcc tacatttgca gggataaaaa
     1981 agcatttaat acctaaattt tcaccttctt gatgaagttt tgaatcctta tcggtaataa
     2041 aaacaaagta tttttttaat tcttgcatat caagtttaaa atgttcaata agaagtttaa
     2101 aaagcgatac aacttctata gtactacctg ttttgctgat gattaaaaac aaactttcct
     2161 caagcttgat tttttctaaa gtcttattaa aagaatgtga acttgtgtta tcgagtataa
     2221 aaagttctct ttggttgctt ttttcattaa aaagcatatc acgcaaggct tttacaccac
     2281 aacttgaacc acccattccc actaaaacga tattttttat gtgttctttg tctttgataa
     2341 aagccaaact ctcatcgatt aaattcaaac ttgtatcaat aagatgataa taccctatat
     2401 ctccactttt tacctcatca ttaatacgat ttgcataaga acttatagtg tgaatttcac
     2461 tttgcttaaa aaaaagtgta ttgtttaaca tttacttttc tcgtaaaaat aatttgtcgc
     2521 ttctacaaag ccttctacac ttccacaatc aaagcgtttt ccttgaaatt tataagctaa
     2581 aaccatacca ttggttgctt gagttaaaag cgcgtcggta agttggactt caccattttt
     2641 tcccgcttta gtattttcta aaattccaaa aatatcagga gttaaaatat atcttcctat
     2701 gatagcaaga ttacttggag cttcatcagg acttggtttt tctatcatag aattaaccat
     2761 gataagattt tcttctacaa aatttccaga aattactcca tagtttgaaa cttgctcttt
     2821 tggtacttcc atcacagcta tgatggtgca gcgatatttt tcataaattt ttaccatttg
     2881 agccataaca tttaagcctt cttcattgac acacaaatca tcagctaaaa ttacgccaaa
     2941 agcttcatcg ccaaccaaag gtctaccttt taaaaccgca tcacctaaac ctttcatttg
     3001 attttgtctt gtaaaagtaa aggtgcaacg attgatcaaa gagcgaattt catcaagtaa
     3061 gtattctttt tttgtacctg aaatttgatg ctcaagttca taagaaatat caaaataatc
     3121 ctccaaagct ctttttccac gccctgtgac aaagcccata ttttccattc ctgcttccaa
     3181 agcttcatca acaccataat ggatcaaagg tttggttaag ataggtaaca tctctttagg
     3241 taaagttttt gttgcaggta aaaatctcgt cccataacct gccgcaggga aaatacaagt
     3301 ttgaagcata aaaatttcct tttatttttt tatcattata gcttattttt atgaattttc
     3361 atgcaactag gcaaagttct ttttgccttg ttattcaaac tctgccttag ctaatttaac
     3421 aatggtttct actactttag aatcttcaag tgttgaaata tcctgtttga tttcttcgcc
     3481 tcttgctata gttcttaaaa ttcttctcat tattttaccg cttctagttt ttggcaaacc
     3541 tggagtataa agaatttttt ctattttagc tataggtcct atttctactc ttaaaatgtc
     3601 attaagttct tttaaagttt ctatagctcc gccaagatca caactggatg caggacttaa
     3661 aaccacaaaa gcaaacaatg actcgccctt aatcacatcc aaaatactca ctacagctga
     3721 ttctgctaca cttggatgtt tagcaatagc gctttcaatt tcagccgttc ctatacgatg
     3781 tcctgcaaca ttaaccacat catctgttct tcctgtgatg gtaatataac catttttatc
     3841 ataaaaagca ccatcgccac taaaatatac agcttttcca tcttttttag cttgagaaaa
     3901 ataactttct atatagcgtt catcattacc ccaaattcca cgaatcatcg aaggccaagg
     3961 tttggttata caaagcaatc catcttcacc ttcatctttt ttattgcctt cttcatcaat
     4021 aacttctgca aaaattcctg gcaaaggcaa ggtagcacaa cctggtttta aaggagtagc
     4081 gcctggtaaa ggcgtgatca tatgcccacc tgtttctgtt tgccaccaag tatcgactat
     4141 aggactttta gttcccccta tttcatcata aaaccacttc caagcactag gattgatagg
     4201 ctctccaacc gttccaagca cttcaagcgt acttaaatca tattttcttg gctcatcagg
     4261 tgcatcagca tgaagcattc ttatggcagt tggcgaaatg tagaatttgc ttatttgata
     4321 ctcttctatc attctccacc aacgcccaga atttggataa gtaggagttc cttcatgcat
     4381 tatagtcgtt gctccacatg ctaaaggccc ataaactaca taagtatgtc ctgtaatcca
     4441 acccacatca gcactacacc aataattatc ataatcttta atatcaaaaa cccattccat
     4501 agtcatttgt gcccaaagta tatatcctgc acttgcatgc ataactcctt ttggcttacc
     4561 tgttgatcct gaagtgtaaa gcaaaaacaa caaatcctca ctatccataa tttcgggttc
     4621 acacttataa gactcatttt tcacaagttc gttataaaca tagtcccttc ctttaatata
     4681 ttctataggc tcattattgc gtataactat aagtactttt tctacacttt cacacccttc
     4741 acttaaagcc ttatctactg caggttttaa catataaggt ttgccacgac gaaaagcacc
     4801 atcagctgtt actacaagtt tagctcctgc atctataatc ctatctcgca aagcttctgg
     4861 agaaaatcct ccaaatacca cactatgaat agccccaatc cttgcacaag ctaacattac
     4921 tatagctgtt tctggaatca taggcatata aattacaacc ctatcgcctt tttttactcc
     4981 gaatttttta agcaaattgg ctgccttgca agtttcatgc aataatcttc tataagtata
     5041 aacttcataa tcccccattt caccttcaaa aatcaaagca gctttattgc gtcttgtttt
     5101 catatgacga tcaagacatt gataacttac atttaaagtt ccaccttcaa accatttata
     5161 aaatggagct ttatcctcat ttagcactct tgaaaaaggc gaaaaccact caatcttctc
     5221 aaatgcttgt cttttccaaa aaccttcaaa atcttccttg gcttcatcgc ataaatcata
     5281 gtattcgcat aaatttttta tacgagcatt acaagaaaat tctttacttg gcttaaaaag
     5341 ctcttgatta ttttgattaa gcataaaaac tccttatata gttattttta aacattatat
     5401 aagagtttat ttgtattaaa tacaaattta aaaaataatt aag
//
LOCUS       DARGEX010000098         5411 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.098, whole genome shotgun sequence.
ACCESSION   DARGEX010000098 DARGEX010000000
VERSION     DARGEX010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5411
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.098"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..205
                     /locus_tag="SF010_001497"
     CDS             <1..205
                     /locus_tag="SF010_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8230396.1"
                     /translation="NAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGK
                     IKVKNGKDGACFEIFLKLKERVE"
     gene            208..888
                     /locus_tag="SF010_001498"
     CDS             208..888
                     /locus_tag="SF010_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8230397.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            1014..2480
                     /gene="ccoN"
                     /locus_tag="SF010_001499"
     CDS             1014..2480
                     /gene="ccoN"
                     /locus_tag="SF010_001499"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG8230398.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            2493..3158
                     /gene="ccoO"
                     /locus_tag="SF010_001500"
     CDS             2493..3158
                     /gene="ccoO"
                     /locus_tag="SF010_001500"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG8230399.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            3163..3426
                     /locus_tag="SF010_001501"
     CDS             3163..3426
                     /locus_tag="SF010_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG8230400.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            3426..4289
                     /locus_tag="SF010_001502"
     CDS             3426..4289
                     /locus_tag="SF010_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8230401.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            4286..4507
                     /locus_tag="SF010_001503"
     CDS             4286..4507
                     /locus_tag="SF010_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG8230402.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWSLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            4504..4605
                     /locus_tag="SF010_001504"
     CDS             4504..4605
                     /locus_tag="SF010_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230403.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            4602..5204
                     /locus_tag="SF010_001505"
     CDS             4602..5204
                     /locus_tag="SF010_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230404.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            5191..>5411
                     /locus_tag="SF010_001506"
     CDS             5191..>5411
                     /locus_tag="SF010_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230405.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQN"
BASE COUNT         1772 a          647 c         1090 g         1902 t
ORIGIN      
        1 taatgctggt gggattgata aagaaaattt agataaaatt tttcaacctt attttacaac
       61 aaaacatcct agtcaaggta taggagtagg actttatata agtagacaaa ttatcgaaag
      121 tttccaagga aaaataaaag ttaaaaatgg aaaagacggg gcttgttttg agatattttt
      181 aaaactaaaa gagagggtag agtagaaatg tcacaagaat gtaaagaatt gataatatta
      241 gtagttgaag atgaggttaa ggctagagaa tcaatgatta atatattaag cgaacgcttt
      301 agtaaagtaa tcggagctca aaatggagat gaggggctta aaaaatttaa aaaatttaag
      361 ccagatttag ttatcacaga tattgctatg cctattatgg atggactgga tatggcaaga
      421 gagattaaag aaatttcaga tgatgtccca attgttgttc ttagtgcgta ttcagagaaa
      481 gagagacttt tgcgttctat tgatattggt atagataaat atttgattaa acctgttgat
      541 atagaagagt tgtttaaagt tttagattat ctgataggtg aaaaaattga agcaaatatg
      601 cttgtaaaaa tttctgaaga atatcaattt aacaaaacta aacgaacttt aatttacagt
      661 ggtggagaaa ttgttttaac taaaaaagaa ttggctttta tttctttgct tttaaagcaa
      721 cctggagctt tggttttgca tgaagatatt aagaaaaatg tttggatagg tgaacatgtg
      781 agcgatactg ctgttagaac ttttataaaa agagtaagag ataaagtggg tgaagatttt
      841 ataaaaaatg tgccaagttt aggttataag ataaatatca ataaataaga ctgatttagc
      901 cttaaaatat aaaacataac aaatgattaa caaaattatc atttttaaga aaaaatgtat
      961 aattaatatt ctataatatt ctcttgttat caaaaatttt aaggagaaag tcgatgcatc
     1021 caggtaatgt attaaattac gactatacgg ttgcaagata ttttatgttt gcgaccatat
     1081 tgtttggcat tgttggtatg gctataggaa ctcttatagc ttttcaaatg gcatatccta
     1141 atttaaatta tttagcagga gaatatgcca ctttttcaag acttagacca cttcatactt
     1201 caggtgtgat ttttggtttt atgctttcag ggatttgggc aacttggtat tatataggtc
     1261 agcgtgttct taaagtgagt atggctgagt caagattttt aatggctgtt ggtaagcttc
     1321 atttttggct ttatatgctt actatggttt tagctgttat atctttgttt atgggtgtga
     1381 ctacatctaa agaatatgca gagcttgagt ggcctttaga tattcttgtt gttcttgttt
     1441 gggttttatg gggtgtaagt atttttggac ttattggaat tcgccgtgaa aaaacccttt
     1501 atatttctct atggtattat atagctacat ttttaggtat agctatgctt tatcttttta
     1561 acaacatgga agtaccaact tattttgtta ctggaatggg taaatggtgg catagtgtat
     1621 caatgtatgc aggaacaaat gatgctttag tacaatggtg gtatggacat aatgctgtgg
     1681 catttgtatt tactgtgggt attattgctc aaatttatta cttcttgcca aaagaaagtg
     1741 gtcagccgat tttctcttat aaactctctt tatttgcatt ttggggctta atgtttgttt
     1801 atctttgggc aggtggtcac catttgattt attcaactgt acctgattgg atgcaaacta
     1861 tgggttcggt tttctctgta gtattgattt taccttcttg gggttcagcg attaatatct
     1921 tgcttactat gaaaggtgag tggagtcagc ttcgcgagag tccgttgatt aaatttatga
     1981 ttttggcatc aactttctat atgttctcaa cacttgaagg gccaattctt tcaattaaat
     2041 ctgttaatgc tttagcacac tttacagatt ggattccagg acatgttcat gatggaacat
     2101 taggttgggt aggatttatg actatggctg cgctttatca tatgactcct agagttttca
     2161 aaagagagct ttatagcaaa tctttaatgg aagctcaatt ttggatccaa accacaggta
     2221 tagttcttta ttttgcttca atgtggattg cgggtattac tcaaggtatg atgtggagag
     2281 cgacagatga gtatggtaac ttgctttata gctttattga tactgtggtg gctattgttc
     2341 cttattattg gattagagcg attggtggat tgttgtatct tatcggtttc tttatgttta
     2401 cttataatat ttacaaaaca attgcttgtg gaagagtgct tgataaagaa ccaaaaagcg
     2461 cttcgcctat ggcagcataa aaaggagaaa atatgtttag ttggttagaa aaaaatccat
     2521 tcttttttgc tgtagctgtt tttgtagtga ttgcttatgc aggcatagtt gaagttttac
     2581 caaattttgc agaaaatgca agaccaattg aaggtaaaaa accttatacg gttttacaac
     2641 ttgcagggcg tgcagtatat attaaagata gttgtaatgc ttgtcattca cagcttattc
     2701 gtccatttaa atcagaaaca gatcgttatg gtatgtattc tgtaagtggt gaatttgctt
     2761 atgatagacc ttttctttgg ggctcaaaaa gaacaggacc tgatcttgct cgtgtaggaa
     2821 attatagaac ggctgattgg catgaaaatc atatgtggga tcctacttct gttgttccag
     2881 attctattat gccttcatat aagcatatgt ttaaaaataa tgcagatatt gaaactgctt
     2941 atgctgaggc tttaactgtg aaaaaagttt tcaatgttcc ttatgatgca gaaaatggaa
     3001 caaaacttgg ttcttgggag gatgcacaag ctgaagtaaa agctgaagct caggctatag
     3061 ttgatcaaat gaaaaatcaa gaagtaaaag atgcttttgc taaaggtgaa atcaaagaaa
     3121 tagttgcttt gatcgcttat ttaaatagct taaagtaaga tgatggaaca tttatcaata
     3181 gtttttgatg tgattaaaaa tttaatcaca tttgatttag caacagttca aaaacatgag
     3241 tgggagattt tccaaggtta tggttttttt gcactcgtga tgtttttgtc aatagtatta
     3301 tatgcgtatt tgtatcattt atatagaaca gaaaaaaaag gcgagagaaa ttatgaaaat
     3361 tatgcaaacc ttgccttaaa agatgatatt gatgatagtg tattagaaag taaaaggagt
     3421 gcttaatgca atggttaaat ttagaagata atgttaatct cttatcttta attggagcta
     3481 ttcttatcat tttaatcaca ctagttattg tgggtagaat gtttaagcaa atgaaagaaa
     3541 agaaaggcga gtcagagctt agtgaacata gttgggatgg aataggagag tataaaaatg
     3601 ctgttcctac tggttgggct gtggtatttt tcctgactat tgtttgggct atttggtatt
     3661 ttctatgggg atatccttta aattcttttt caagtatagg tcaatataat gaagaagtag
     3721 caactcataa tacaaaattt gaagaaaaat ttaaaaattt atctcctgaa gataaaatag
     3781 caatgggtca aaatatcttt ttagttcagt gttcggcttg tcatggaatt acaggagatg
     3841 gtatcaatgg taaagctcaa aatttaaata tttggggtag tgaagaaggt ataatcaatg
     3901 taattaaaca tggttcaaaa ggtatgaatt ttccaggtgg agaaatgctt ggtgctgctg
     3961 atttaggtgt agcagaagaa gatatccctg ctattgctgc ttatgtagca aaagatcttt
     4021 cagctattaa gaaaactgca aatgaaaatt tagtagcaaa aggtaaagaa gcttatgcaa
     4081 cttgtgcagc atgccatgga gaagatggaa aaggtcaaga tggaatgttc ccagatctta
     4141 caaaatacgg ttctgcagct tttgtagtag atgttttaca tagtggtaag gctggtttta
     4201 taggaacaat gccgagtttt ccaacactta atgatattca aaaagaagct gttggcgagt
     4261 atgtaatttc tctttcaagg ggtgaatgat ggaaaataat aatagatgcg tgttttctct
     4321 ttcaggtgtt acaggtatgt taattgctac ggttttgttg cttgctatct tagcagtttt
     4381 aactatttgg agtcttaaag ctcagcaaga agtgatgcaa aagccatata gtcttaaaga
     4441 tgtacaaagt gtaaagatgt ttggttcaaa agaacaagat catagaagta taaaggaagc
     4501 acaatgagta aggctttgga atatttaatt gttattggtt tagttgttgc tgctgcaatc
     4561 accgcttggt cggttttgac cgtaaatcat cttcatatag gatgaaaaaa atattacaag
     4621 atggcttttt tttagctatc ttcttctttg ttttattgcc ttctagggtt tttgctcttg
     4681 atgctgtact ttttaatgaa aatattttaa gtcaaaaagt aagtaacgag attaatctta
     4741 taggaaaaga gctttaccaa aaaagtaata tttttatcgg cgttatggtt ggtgataaaa
     4801 ctgaaattga aactttatta aataaacaaa aagaacttcc tcaatcttat atattgcttc
     4861 ttttgtcaaa aaattctcac aaagttgata tagtgggctc aaaaggtgct ttagctttga
     4921 ttgataaaga agctgtgctt agtccttatc ctggaacagg atctattttg ccgatattag
     4981 ctacaaataa aggtgatatt tataatgctg ctatacttaa tggttatgca gatattgtag
     5041 atcgtgtggc aaaatccttg ggattacaat tagaacattc tataggtaat gcaaatcgtg
     5101 atactatcaa tattttaaga atacttattt atggatttat ttgctttgca ttgttatact
     5161 atgcacaaag aagaataaag aggaaaaaaa atgttagaaa ctaaaaaaag tttttggcct
     5221 tatggtattt tgctttcact tttggctata attattgctt gtattgtaac gatttttata
     5281 gcaagtcacc atcctgtgta tgaggatgat ttttattttg actcttatca aaatgttgaa
     5341 aataattaca atcaaataca aaaacaacaa gtaaattttg ataaattttt taaagtaaat
     5401 tttcaaaatg a
//
LOCUS       DARGEX010000099         5291 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.099, whole genome shotgun sequence.
ACCESSION   DARGEX010000099 DARGEX010000000
VERSION     DARGEX010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5291
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.099"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            11..526
                     /locus_tag="SF010_001507"
     CDS             11..526
                     /locus_tag="SF010_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230406.1"
                     /translation="MLKKLVNCLILGSLFTSSAFAGDFLAKVSNGALSDNSQGVKALN
                     LDEMKQVKGGYQVLTSKLGNSEYIALAIPDNTTTYKQLVAIYTVTGDNTFSNTFLGYT
                     VKRNIAISSSGKPYVLFNYGVALLDRQTGLHRVNSSEILNNNQVIKELTMKYKTQFES
                     NLGGWTARARR"
     gene            596..1744
                     /locus_tag="SF010_001508"
     CDS             596..1744
                     /locus_tag="SF010_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230407.1"
                     /translation="MINGINSYSSYNYTNTFSNNTSNIKSSNVANDNSSLVSDKSRAV
                     SKMLGYGVDKDGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSCINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLVKIPQGFEFNQNTLEINKKYNLNDKEYKDFM
                     SNYQNYSPTSHNIKIMTFFSLDDKSDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGF
                     QAKNYFIEGQTSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDM
                     SIDDFKQKILEQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQSSSETYKDDNKMNEL
                     LKKLLENKFGTSDELELLFGMKFSDDNTGEFNKIISQNTAQKSIDIKA"
     gene            1865..2470
                     /locus_tag="SF010_001509"
     CDS             1865..2470
                     /locus_tag="SF010_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG8230408.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2470..3486
                     /gene="mnmA"
                     /locus_tag="SF010_001510"
     CDS             2470..3486
                     /gene="mnmA"
                     /locus_tag="SF010_001510"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG8230409.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEIKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3538..3759)
                     /locus_tag="SF010_001511"
     CDS             complement(3538..3759)
                     /locus_tag="SF010_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8230410.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSTGFVISIVDIVVMIAVGLV"
     gene            complement(3882..4121)
                     /locus_tag="SF010_001512"
     CDS             complement(3882..4121)
                     /locus_tag="SF010_001512"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8230411.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(4060..4275)
                     /locus_tag="SF010_001513"
     CDS             complement(4060..4275)
                     /locus_tag="SF010_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8230412.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFAKDKLKELVKMKNS
                     EKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4218..4562)
                     /locus_tag="SF010_001514"
     CDS             complement(4218..4562)
                     /locus_tag="SF010_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8230413.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(4785..4934)
                     /locus_tag="SF010_001515"
     CDS             complement(4785..4934)
                     /locus_tag="SF010_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HEG8230414.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            complement(5161..5258)
                     /gene="ffs"
                     /locus_tag="SF010_001516"
     ncRNA           complement(5161..5258)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SF010_001516"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         2073 a          754 c          840 g         1624 t
ORIGIN      
        1 ggagaattat atgttaaaaa aattagtaaa ttgtttaatt ttgggttctt tatttacaag
       61 ttctgctttt gctggggatt ttttagctaa ggttagtaat ggtgctttaa gtgataattc
      121 tcaaggagtt aaggctctta atttagatga gatgaaacaa gttaagggtg gatatcaagt
      181 tcttacaagc aaacttggaa attctgaata tatagcatta gctattccag ataatacaac
      241 aacatataaa cagttggtag ccatttatac cgtaactggc gataacactt tttcaaatac
      301 atttttaggt tatacagtaa aaagaaatat cgcaatatca agctcgggaa aaccttatgt
      361 tctttttaac tatggtgttg cactacttga tagacaaacg gggttgcata gagttaattc
      421 gagtgagatt ttaaataata atcaggttat taaagaatta actatgaaat ataaaactca
      481 atttgaaagt aatcttggtg gctggactgc tagagctaga agataaaaaa cttatgaaaa
      541 aatcattttt gccgatttat cttataaata aaactttact tacaggaagg taaaaatgat
      601 taatggtata aattcttatt caagctacaa ttacacaaat acttttagta ataatacttc
      661 aaatataaaa tcatctaatg ttgcaaatga taactcaagc cttgtaagcg ataaatctag
      721 ggcagtaagt aaaatgctag gatatggcgt agataaagat ggctttttta caagcgattt
      781 taacgaagct gcaggcttac caaaagatta taagatttat gctaaagata tagaaaattt
      841 tgttaatatt caaacaaaaa gtctattatc aagttgtatt aatattgata tagcaaaaag
      901 tataggaaat gcttataaag tattttcaca acttttaaat gatgagttaa acaataaaat
      961 caattttaca aaagaagact tagtaaaaat accacaaggt ttcgaattta atcaaaatac
     1021 tttggagata aataaaaaat ataatttaaa tgataaagag tataaagatt ttatgtctaa
     1081 ttatcaaaat tactctccga cttcccataa tataaaaata atgacttttt tctcacttga
     1141 tgataaaagt gatattttta aatattcttt aatagatcct actccttata gtaataatga
     1201 taaaactata acaaaaagtg gtatttttat gactttcttt actggatttc aagcaaaaaa
     1261 ctattttatc gaaggacaaa caagtatttt aggcaaaatg caaggatttg ataaaactat
     1321 gagtcaaagt gaaattgata atttaaacaa attcataagt gaaaatagta tgaattttaa
     1381 aggagatatt tttaagcttt ttgatttatt aaattcagat atgagcattg atgattttaa
     1441 acaaaaaata ctagaacaaa aagaaaattt aaacaatcct acaaaaaata caaataacaa
     1501 agaaacttca gaagaagaca aaaaaaagcc atttaaacct atacaagcgc aaagttcaag
     1561 cgaaacctat aaagatgata ataaaatgaa tgagctttta aaaaagctac tggaaaataa
     1621 atttggcaca agcgatgagt tagaacttct ttttggtatg aaatttagtg atgataacac
     1681 aggagaattt aacaaaatta tttctcaaaa tactgcacaa aaaagtatag atattaaagc
     1741 ttaaggattt aaaagtcttt aaattcctaa tcttaataaa ataaacctat taaaacttat
     1801 ataataaaga acttattata aatttttagc tagaatggaa tttattttaa ctaaaggttg
     1861 aaaaatgaat gaaaaaataa gccaagattt agaaaaattt gctaacatac caaacctaaa
     1921 aaatgccgta actttttttg gttcagcaag gcttaaagaa gataattttt attatcagca
     1981 ggctaaaatt ttggcacaaa aatgtgttca aaatggtttt tgtgtgataa gtggtggagg
     2041 tggtggtatt atgcgtgcag ccaacgaagg tgctttttca caaaaaaata atacaaattc
     2101 aatgagttct gtagggttta atatattttt acctcacgag caaaaactta atgattttgt
     2161 agaatataat attacttttg agagcttagc catacgcaaa atggctctta ttgaaaagag
     2221 tctagctttt gtgatcttcc caggcggctt tggaacactt gatgaattgt gtgaaattct
     2281 tacattaaaa caattagaat ttaaaaaaga tgttcctatt attttgtttg ggagtgaatt
     2341 ttggcgaggt tttgatgagt tcgtcagaaa ttctttactc aaacttgaag tgatttctaa
     2401 aggagatgag ttaaagtata aaatcactga cgacttggat tttataatta atactttaaa
     2461 ggaaatttaa tgaaaattct agtcgctatg agcggtggag ttgatagtac agtcactgct
     2521 tacaaactta aaaatttagg tcatgaagtt ataggttgtt atatgaaact tcatggcaaa
     2581 ccaaattatc acgaagaaaa tatcaaaaaa gtagaaaaag ttgcaaactt tttgcaaatt
     2641 ccttatcata ttttagactt acaagaagat tttaaaaaca aagtttacat gccttttgtg
     2701 gatacttata aagagggtaa aacaccaaat ccttgcgctt tatgtaaccg ttttatcaaa
     2761 cttggaaaac ttttagaatt tgctaaaagt ttaggttgtg aaaaacttgc cacagggcat
     2821 tatgcaagac ttgaaaacaa cttaataaaa accgcagtag atgaaagcaa ggatcaaagc
     2881 tattttttgg ccagtgcaga taaagaagct ttaaaatatc ttatttttcc gctaggcgaa
     2941 ataaaaaaag aagatgtgaa aaaatttgct tccactatag aggttttaaa atcttttgcc
     3001 acccaaaagg aaagttctga aatttgcttt gttgaagata cttatgtgca agttttagat
     3061 cagtttatgg atacaaaaat tcctggagaa gtattagata gtagcggaaa agtagtaggc
     3121 aaacatgagg gctatatgca ctataccata ggcaaaagaa gaggttttga agtgcgtgga
     3181 gcacatgagc cacattttgt tttaaaaatc aatcctaagc aaaatcaaat catcgtagga
     3241 acaaaagaag agcttaaaat cagtgaattt aacctaaaaa atatcaatct ttttatagac
     3301 gctaaagagc ttgattgcga agtaaaaatc cgctatcgtt caaaatccac accttgcaag
     3361 gtagaaattt atgaagataa aagtgcaaaa atcatcctaa aagatcctgt ttatgggctt
     3421 gctagcggac aaatggcagt cttttatgat catgataaag tcatagcaag tggttttata
     3481 gaataatttc taggaattaa ttcctagaaa ttattaataa aatcctaaaa ttttccacta
     3541 aacaagccca acagctatca tcactactat atcaactatg gaaatcacaa aacctgtact
     3601 ccaccatttt ttaagagtta cacagcctgt tccaaaaata acaggagctg ttcctattgc
     3661 atagtgagtt aatgccatca taacattacc tgaagctatc ataataaaag cataaaaaag
     3721 tggtggtgct cctaaggcaa gctgcactat aaaaaacaaa aaacattgct gatatatgag
     3781 ctgtaatgga agcaaagaaa tagtgtgtat ataaaaaaag caaggcttaa aaatatcata
     3841 atagaaattt ccccaagtcc catagcagaa gcaaattcac cttaagcttc agctaaaaac
     3901 tgtgtaacgc caagtttgcc aagtaaagtt gccatcatta caagagctga aaaccatact
     3961 aaagtattcc aagcagcttt ttcagccaaa acttccccaa aagttaaaac tccactaatc
     4021 aacaccaaag acaacccaag caaagccaca ctagtcgcat caagagaaat tccaaaaaaa
     4081 caagcccaaa gctccagccc ataaaagtaa aagcgagaca aaaacactga gaatgatttt
     4141 ttcactattt ttcattttta caagttcttt taatttatct ttagcaaaag tagaagcatt
     4201 aggcgtggat ttaatttcta gcggagagag aaaataaagc accaaaggat ttggagctgt
     4261 agctgtaata aacatagctg atgaaatagg attggctctt gataatttac caaagaaaga
     4321 taagtgccta ttttattttg tgttccatct tcaggagtgg atttaaaact tcttgcaata
     4381 acttgaacta taggatttat gatagcccct gctcttgcag tatttgaagg agtaactgga
     4441 gctaaaatag tttcacaaaa agctatagaa taagcaatac ctaaggtttt tttaccaaga
     4501 atactgataa aatgataagc caaatgctct ccaagtcctg ttttaataac tccacgagcc
     4561 acaataatag aataactata agctaaataa gagaatttga aaaaccactt aaagcgtctt
     4621 ttatacccgt tttagatttt aaatttgata tagcagtatt taccttttca tcttatactc
     4681 ttttgatata aaaaatcaag tactgaagta tttaaaggaa attttagtct catcaataag
     4741 ttgttgcgta gaagttttcg aagtagcttt ggtgtaaatt ttacttagat tttcaattgg
     4801 gtagtggtaa tgccactaag agctactatg gcaatagcta tcatacaaac aggccccaaa
     4861 ggcattactt gtaaaatcac tgccataatc acagcaataa aaagcccaag aaaatgccaa
     4921 gaattatctt ccaaacctac aaggagtagg tataggccaa aacacagctg caataaaata
     4981 cgcagcacca acaagggaat tttctttcta tccattgttt atcttttgat attggtaatg
     5041 aaattctagt taactaatat tttaataaat cttaaaatta taatttttaa ataaattttt
     5101 aatttataaa aaagctagcc tgattgaaaa ataaataggg aattttaaaa tgaataaaac
     5161 ccttccccag ataactgcgg cacacactaa aatcaagtgc tctgctgtgt tcccaccctg
     5221 aagcggtgct taaaaatagc attgcacagg tctaagaaaa ggctctaaaa ttatatcaca
     5281 atatacttaa a
//
LOCUS       DARGEX010000100         5149 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.100, whole genome shotgun sequence.
ACCESSION   DARGEX010000100 DARGEX010000000
VERSION     DARGEX010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.100"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..563
                     /locus_tag="SF010_001517"
     CDS             <1..563
                     /locus_tag="SF010_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230415.1"
                     /translation="EWFFYLLCYIIGIYIFYLAFIFISKFKFINFILKLCIYLAFLSI
                     WILSSNFINPFTGVFSSDKLYESQFEKSLNDLNTSAIINLASILQNDFNLHLKDQNIS
                     FTELNSAKASIIANKENLLKLNDVNSNIAKEVLGEKYTELLKTINQDKIIENIIKSTS
                     VLYGIILLLCIFSLQKTARKNSIVPS"
     gene            complement(593..1294)
                     /locus_tag="SF010_001518"
     CDS             complement(593..1294)
                     /locus_tag="SF010_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG8230416.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYGNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1291..2493)
                     /locus_tag="SF010_001519"
     CDS             complement(1291..2493)
                     /locus_tag="SF010_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG8230417.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCMIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKDKK"
     gene            2596..3945
                     /locus_tag="SF010_001520"
     CDS             2596..3945
                     /locus_tag="SF010_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG8230418.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISAALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKNTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3969..5012)
                     /locus_tag="SF010_001521"
     CDS             complement(3969..5012)
                     /locus_tag="SF010_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8230419.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPKLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1866 a          828 c          832 g         1623 t
ORIGIN      
        1 gagaatggtt tttttattta ttgtgctata ttattggtat atatatattc tatcttgcat
       61 ttatattcat ttcaaaattt aagttcatta attttatact taaattatgc atatatcttg
      121 catttttgtc tatttggatt ttaagttcga attttataaa tccttttaca ggtgtatttt
      181 catcagataa gctttatgaa agtcaatttg aaaaaagttt aaatgattta aatacgagtg
      241 ctattataaa tctagcaagc atattgcaga atgattttaa tctccattta aaagatcaaa
      301 atatttcttt tacagagtta aattcagcta aggcatcgat aatagcaaat aaagaaaatc
      361 ttttaaaatt aaacgatgta aattcaaata tagctaagga agttttagga gaaaaatata
      421 cagaactttt aaagactata aatcaagaca agattataga aaacatcata aaatccacta
      481 gtgttttata tggcattata cttttgcttt gtattttctc gctccaaaaa accgcacgaa
      541 aaaattccat agtgccaagc taagccttaa agcttagctt gaaattttat cattagtctt
      601 ttaagtagta ttctatagta gaaaccactc ttatggtttt gatgtaaggt gtgtttttat
      661 ctctgttgct gatgctaaat tgtccttgag aagccttttt tatcttgcct agatggctgt
      721 ttgaatcttg tgcgaatttt atcgctgcat ttctagcatt gagcgttgct tcttctatca
      781 tttgcggttt tatctcattt agcttggtgt aaaggtattc tatgtcataa ttatcgattt
      841 tcgttactat gccaaatttt gcaagacttg aaatgttttc tagtatgctt tttccaagtt
      901 ttacgttttg cgtatagatg agtaaattcg cagtgcctat gtatcggtat gtagcttgag
      961 tgtcgttgcc ataaggatcg cttaaacgat ctatgatgtt tggcgagttg tagctgatct
     1021 catcttcttt tacgccttgt tcttttaaaa atttgatgat attttcttta tcttgttcta
     1081 gttcttcgta taaatttgta agattgttgt ttgatcttgt gaattttata ggaagtatca
     1141 aagtatctgc ttcgacttct ttttggctta aaccctttac acttacactt ctttcaagag
     1201 ttttaaaatc acttaaagcc ttgttaaatc caaaagctag aatcaaactc gccaaaacta
     1261 tggctaaagc cataaagata ttatttgttt tcatttttta tcctttattt tgattagaaa
     1321 atatatcata tttgcaacca atacgcaagc acacattaca aaagcaagga ttatcggcgt
     1381 atttgcgtta atagccccaa ccacaaaaga aataagtcct gcaaaaccaa attgcaccgt
     1441 tccaagcacc gcagaagcag ttccgctatg ttctttaaac cttgccatag ccaaagtcgt
     1501 ggtattgggt gcgatgaaac caagcatagc gatacttgta aaaatactaa gctcaaaaag
     1561 caagaaattt gggtgaaaaa aggcatttgc aagtaaaatc acagtcgata taaacattat
     1621 catcaaagct tttgccaaaa ttttttcgct ttcgtatttt aaaaccaatc tcgcattgat
     1681 atttgcacag atgacaaaac ctaaagcatt tgccccaaaa agcaaggcaa atttttgctc
     1741 acttaagcta aaaaactgcg taaaaacaaa gcttgatcct gtgatataag caaacatcgc
     1801 cgccaaagca aaagaagcac atagtatata aactaaaaag cgtttatcgc ttaaaacaaa
     1861 tttgtagctt ttcatcgctt catgatggga aaattttttg tttttaagat gaggtgcgga
     1921 ttcttttaaa ccaaaaagta tcatcaaaaa aagcaaaatt cccaaagcaa acaaagtcgc
     1981 aaaaatacta tgccatgaaa aatactctag caaaattccc ccaaaagttg gcgaaagcat
     2041 aggagcaaga gaactaaaaa ccatcatcaa agcaaaaatc cctgcagctt ctttgatctc
     2101 aaacaagtca ttgacaatag cccttgcgat aaccacacct gcacaacccc caagtgcttc
     2161 aaaaaatctc aaagcgataa aagcataaat atcatcgata atcatacaaa acaaactcga
     2221 aacgatgaag aaaaatatcc ccaccaaagc tggaatttta cgcccaaaaa tatcacttaa
     2281 aggcccatat ataagctgtc ctaaagcaaa agcgataaaa aaacttgcga tactaagttg
     2341 ggttaaaaaa gaattagttt gaaaactttg ctccacatga gaaagtgcag gcaaatacat
     2401 atctgtagaa agtggtgcta tgcttgacat caaagcaagg ataacgatga gtttaaattt
     2461 agcaaagccg tgaattttgg tgtgtttttg catttgtaat cctaattatt ctaaaagaat
     2521 gattttaaca agtcaatctt agaataatct ttgtttttct atgttaaatt tagggaaaaa
     2581 ttctaaggaa attttatgca aaatttaaac caaaatgaac aaatcaaatg cccaagttgt
     2641 ggaagtttta tcgatatcag cgctgcttta tatgctcaaa ttttagataa agctaagcaa
     2701 gaaatgctaa aacaaaaaaa agaatttgat gatgaggtaa atgctaaaag agctgaatat
     2761 accaaagctt taaatgattt aaaaactcaa aagatagaac aagaaaaact cataaacgag
     2821 caagtaagcc aaaagcttct tttagaaaag caaaaatttg aacaagaact tcttatacaa
     2881 aagcaaaatt tccaaaaaga attcagcgag aaatttaaca aagagcatga aaatgaaatg
     2941 aaaatcatgc aagaagaact cgagaaaaaa agcaaagagc ttagcgagtt tttaagcata
     3001 aaggctgaaa atgaaaggct aaaaagagag caaaaagaaa atgaagaaag attgaaattt
     3061 caagccaaag aagaggcttt taaagaattt aaagaacaag aaagcaaaaa tttggaattt
     3121 gaaagagaaa aaatgcgtct tgaatttcaa aaaaatactc aagaacaaga tcttaagtac
     3181 aaagaactag aaacgaattt taaaagtgta gctcaaaagc tagaagacgc acaacgcagg
     3241 atagaacaag gctcacagca actccaaggc gaagcagccg aactactcat agaagaatac
     3301 atacaaagtg agtatttaag cgatgaagta aaagaagtgc caaaaggcgt aaatggagcc
     3361 gattgtctgc atatagtaaa ggataatttt ggaaatattt gcggaagtat tttatatgag
     3421 agcaaacgca ctaaagaatt taacaaagaa tggcttgata aacttaaact agacagcata
     3481 gctgcaaaaa gtgatatagc ggttttgatt acaaaaacta tgccaaaaga taaagaaaaa
     3541 acgcatttta aagaaggaat tttgatctgt acttttaatg aattcaaagg tgttttagca
     3601 gtgcttagag aaagcattat aaacgcttat aaactcaaaa atgccctgca aaacaaagat
     3661 gaaaaaaatc acattttata cgaatactta aattccaagg aatttaacac gcaaatcact
     3721 tttatactca aaacttacca aaatatgaaa gaagagttag aagctgaaaa aagggctttg
     3781 caaaatatat ggaaaaaaag agaaagagct atagaaaatc taagttttaa ttccactgcc
     3841 atagtgagtt ctttaaacgc gatatttagc gacttacaag gtggaaattt gataggcgaa
     3901 gaagggatta aaagtcttga aaatttagca aaagatgagg attaattttg ggctaagccc
     3961 aaaattaatc attctcctgg gaagtgattt ggatttttcc aaggtccgta ttttactttt
     4021 atgtattctt tagggtctaa attttgttgt ggtgaagcaa aatactcagg ttttaatgat
     4081 ggggatttgc tataagctgt atcaagtcct gcacgatttt ctgtagtggt tataggcatt
     4141 cttacaaaac ctgtattgac ataagctgct atatccagtg catcttcatc gcttaatata
     4201 ggattatccg cactcgcacc aaaaggcatg gctgatttta aaaatcttgc taaaaatggt
     4261 atcatagcca tgtgtccacc atcaggatag ataagtaaag atggatataa atgtccgcta
     4321 ccttgttcgt aattatcatt ttttacccca agtcctcttt cgccatggca agcaacgcaa
     4381 ttttcttcaa agagtttttt tccacgcaca gggtcagctg ggcgatttgg aaaattcatc
     4441 ttagcgaaaa aatctccttc aagctttacg ccgtctttga tgccataagc ttcttttagc
     4501 catttaaaat aagctaaaat tgctttcatt tctttagaat cattaggaaa tctatgagag
     4561 tcagttccac ccattccgcg aattctatct tcaacagaga tgattttcat cgtttctata
     4621 tcaagttttg gataattgtt taggacattt aaaaatggaa taacatattt ttttgtccct
     4681 ggtaaaccat tgccgtcatt gtccatgtga caggaaatac agtttacttc gttgcttgtc
     4741 ttttttagct tgctataggg tcctagagta ctttctgtct tgcttaaaag ctctatgcca
     4801 taacggatta aatccccttg cttacctttt ggaacatcat tgatgcttaa atttttattt
     4861 ggccattctt gcacaggtct tttggaaagt tccttaaaat actctactcc ttccttgtcg
     4921 cttaattctt ctcctacttt gtaatcactc acgcttttag cactaagact caaactaaga
     4981 cataaaccaa gcaataaaat gtgttttttc atgattttcc tcctttttat ttgcagttca
     5041 aattgatttt agtgtatttt ttcttaaata ttaagcataa taagaataat ttaaataaaa
     5101 ttaaatttta aagtgttact aaaagtaata tatatttaaa gtatataat
//
LOCUS       DARGEX010000101         5054 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.101, whole genome shotgun sequence.
ACCESSION   DARGEX010000101 DARGEX010000000
VERSION     DARGEX010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5054
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.101"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(49..1197)
                     /gene="nspC"
                     /locus_tag="SF010_001522"
     CDS             complement(49..1197)
                     /gene="nspC"
                     /locus_tag="SF010_001522"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG8230420.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
     gene            1321..2862
                     /gene="cueO"
                     /locus_tag="SF010_001523"
     CDS             1321..2862
                     /gene="cueO"
                     /locus_tag="SF010_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG8230421.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2864..3085
                     /locus_tag="SF010_001524"
     CDS             2864..3085
                     /locus_tag="SF010_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG8230422.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKTGDKIALLPPVCGG"
     gene            3086..3532
                     /locus_tag="SF010_001525"
     CDS             3086..3532
                     /locus_tag="SF010_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG8230423.1"
                     /translation="MEHFTLYQDSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFNEWQKRVDFDGITLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3536..4726
                     /locus_tag="SF010_001526"
     CDS             3536..4726
                     /locus_tag="SF010_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8230424.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
BASE COUNT         1820 a          805 c          813 g         1616 t
ORIGIN      
        1 aattctcttc cgagtaaaat taacatttta tgcaaattat aaataatact aatttcttaa
       61 agaataatcc ttataagaaa attctcttat catttgaagt tcatttttac ggtctaaaag
      121 catgagattt ggaagtctta taccattaaa agttgtgttt ttcacaatgg tgtaatgaat
      181 ttgatctaaa aaaacaattt tatcgccgat tttaagcttt ttatcaaagg cgtattctcc
      241 cattacatca cctgctaaac aagtatttcc agtaagcaaa taggaaaatt cgctttcttt
      301 taagtctgaa attttttcat tttctcttgt ggccaaaatt ctagcattta aaacttcact
      361 tgtataaggc atgatgatag tatctggcat atgtgcttcg cttgaagtat ctaaaatagc
      421 aatttgtttt tcattttcta tgatatctac tacactagcc accaaatttc ctgtttgcca
      481 acccaccgct tcgcctggtt caagataaac ttgcacgcca tatttatcac tgaaattttt
      541 acacaaagca ataagttttt caacatcata gcctttttta gtgatgtgat gtcctcctcc
      601 aaaattcacc catttcattt gccctatcca tttgccaaat ttctcttcaa aagcctttaa
      661 aactgcttct aaagcatcag cactttcttc acaaagtgcg tgaaaatgaa gtccttctat
      721 agcatttaaa tccacatttt caaaatcttt agcacgaatt ccaagtcttg agtatcttcc
      781 acaaggattg taaagttctt ttggggctag agaaaattca acattacaac gaagacctaa
      841 ggaatttttt tgtgttttag cttgaaattt atgaaattgg gctaaagagt taaatactat
      901 atgatgagat aaactggcta tttcacctat ttcatcttct ttaaaagcag gtgaataagt
      961 atgaatttct ttatccatgt attctttagc aaattttgct tcccaaagtc cgctacaagt
     1021 acaacctttt aggtattctc caacaatttt catcgctcct gaaaaagcaa aaccttttaa
     1081 agctaaaagc actttagcac cacttttttc accaacactt gctaaaagct cacaattttt
     1141 tcttaattta tcttcttcta aaatataagc tggagtttga attttttcat aaaacattat
     1201 ttttccttga ttaaattgct aaaatcataa caaaattaaa ccaaattttc aaaataaata
     1261 tttactaaag ttaaaaaaat aatgactata atacaaaaaa tcaagcaaaa ggaaaaacta
     1321 atgaatagaa gaaatttttt aaaatttaat gcacttactc tagcaagtat gggtgtagcc
     1381 tatgcaaatc ctatgcacga tatgcactcc atgcataaaa atcattctat aaatcatgac
     1441 ttagatactt cttttataaa ctttgctcca aaaaatttaa agcttttaga tccaaaacaa
     1501 ttcccccaag gagaaatttt aaaagccttg cctttactca aaaatgaaag taaagaaaaa
     1561 aatatttttc gtgctaccct agaaatcaaa gaaaatcata tagagcttat caaaggtaaa
     1621 aaaaccttat tttatactta caatggcctc gtgcctgctc caaaaataga agtttttgaa
     1681 ggagataaac ttgaaatttt agtcaaaaac aaactcaaag aagctacaac tatacattgg
     1741 catggcgttc ctgtgccacc tgatcaagat ggaagcccac atgatcctat cttagcagga
     1801 gaagaaagaa tatatcgttt tgaaattcct caagatagcg caggaactta ctggtatcat
     1861 ccacatcctc attatacggc ttctaaacaa gtttttatgg gtttagcagg ggcttttgtg
     1921 atcaaagcaa aaaaagatgc tttaagtcat ttaaaagaaa aagatttgat gattagcgat
     1981 ttgcgtcttg atgaaaacgc tcaaattcca aacaacaacc taaatgattg gctaaatggt
     2041 agagaaggag aatttgtact catcaatgga caatttaaac ctaaaatcaa actcgccaca
     2101 aacgaacgca tacgcattta taatgctact gcagcaagat atttaaattt acgcatacaa
     2161 ggagctaagt ttatacttgt tggtactgat ggtggactta tagaaaaagc tatttataaa
     2221 gaagaacttt tcttaagtcc tgcttctcgt gtagaagttt taatcgacgc tccaaaagat
     2281 gggaatttta agctagaaag tgcttattat gatagggaca aaatgatggt aaaagaagaa
     2341 tctaataccc tatttttagc tagtattagc ctaaaaaaag aaaaattaga acttccaaaa
     2401 aatttaaaaa ttttcaaacc tttagaagaa cctaaggaat ttaaagaaat aatcatgagt
     2461 gaagatcata tgcaaatgca tggaatgatg ggaaaaagtg aaaatgaatt aaaaatcgct
     2521 cttgcgtcta tgtttttaat caatggcaaa agctatgatt taaaacgcat tgatttaagc
     2581 tccaagcttg gagtagttga agactggata gtgataaaca aatctcacat ggatcatcct
     2641 ttccacatac acggcacgca atttgaactc atctcatcaa aactcaatgg caaagttcaa
     2701 aaagccgaat ttagagcctt cagagatact ataaatgtgc gtcctaatga agagttaaga
     2761 cttagaatga aacaagattt taaaggactt agaatgtatc attgccatat tttagaacat
     2821 gaagatttag gaatgatggg aaatttagaa gtaaaggaat aaaatggtaa aagtggaatt
     2881 tttaggccct ataaataaag aaaatttaga acttgaagta aaaaatttaa aagaattaaa
     2941 agaaattttg caaaaagatg agagtttaaa agaatggcta gaactttgtg cggtatcttt
     3001 aaatgatgaa atcatttttg atgaaaacac taagttaaaa actggtgata aaatagcact
     3061 tttaccgcca gtttgcgggg gttaaatgga acattttaca ctctatcaag attctttaga
     3121 tattcctaaa atttatagcc aatggtatga atttgccaag gataaaaact gcggtgcttt
     3181 gctgactttt tgtggtattg tgcgtgaaga aggaggcatt gaggcactta gttttgatat
     3241 ttatgaaccg cttttaaaaa aatggtttaa tgagtggcaa aaaagagtag attttgatgg
     3301 tattaccttg ctttttgctc actctatagg tgatgtagcg gttcatgaaa gctcttattt
     3361 tgcaggaatt ttaagcaaac aaagaaaatt aggacttaaa cttcttaatg aatttgttga
     3421 agattttaaa gcaagtgcac ccatttggaa gtatgatgta ataaacaaag aaagaattta
     3481 tgccaaagaa agatcaacca aactttgcgg tgcaggactt ttaaaaggat aaaaaatgtt
     3541 aatgtcttat gaagaaagtt taaaaatttt acattctcat atcaaaacct atgaaaagat
     3601 tgaaaaaata gctcttacag agtgtttagg acgcatttta gctcaagaca taaaagcccc
     3661 taaaaaccaa cctgaatttc caacttcggc tatggatggt tatgcgatca aatttgaaga
     3721 tcaagataag cctttaaaaa ttttaggcct cacacctgcg ggcactatgc cacaatttag
     3781 cgtgcaaaat ggtacttgtg taaaaacctt tacaggctca ctcatgagcg aaggaagcga
     3841 tactttagtc cctgttgaaa atatacgcgt agaaaatgat actcttttta tagaaaaaaa
     3901 agttcctcaa gcttttgccg tgcgtgcggt aggagaaaac tataaaaaag atgaaatttt
     3961 actcaaaaaa ggcacaaggt taaattatag cgagatagct cttttagctg aacttggatt
     4021 ttttcacatt agtgtgttta taaagcctat tgtaggggtt ttaagtagtg gaagtgagat
     4081 caaagatcta ggagaagcct tggaaaatcc tgctcaaatc cgctcttcaa atcatatcgc
     4141 catagctaat ttagctaaaa atttaaattg cgatacaagg gtttttcctc ttttaaaaga
     4201 tgatgagaaa gccacttttt ccacccttga aagtgctttg caaagttgtg atattttggt
     4261 tacaacgggc ggggtttcta tgggagattt tgacttttta aaaaaagcca tcaaagaata
     4321 cgaaatcatc atcgataaag ccgacataaa accaggtaga catatcaaaa tagctaaggc
     4381 taatgaaaaa ttcatcatcg ccttaccagg ttttccttac tcggctatgg taatgtttaa
     4441 tctttacaca agagagattt taaactcttg gttacttcaa cctaaagact atatttgcaa
     4501 agccttttta caaggaagtt acaagaaaaa aacaccttat ttggaatttg tcgcttgcaa
     4561 tatagagttt aaaaatggac gcattttagc caatcttgaa ggcaaaaaag aaggctctag
     4621 tgcgattata aacaatctta acaataaagc tgcccttatg gtggtgccaa aagaatgtga
     4681 aatgttagaa aatgaaagtt tagtagatat tatctttatg ccttaaaatt atttaaataa
     4741 ttttatttcg attttaatca accctaaatt tcaataagtt tcaaattcgc aacctccttt
     4801 tagtggagta attagcccta gtggagtttc aatccactag ggtttatttt agtccctttt
     4861 taaatttctt tatggtaaaa taaactaatg tgtggatttt tgtttaatgc tgttttagtc
     4921 cctttttaaa tttctttatg gtaaaatatt gaaattaaca ttcataccag caagtaagtt
     4981 ttagtccctt tttaaatttc tttatggtaa aataaatcgt agagctaaaa ctatagcaag
     5041 agagttttag tccc
//
LOCUS       DARGEX010000102         4927 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.102, whole genome shotgun sequence.
ACCESSION   DARGEX010000102 DARGEX010000000
VERSION     DARGEX010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4927
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.102"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            100..1086
                     /locus_tag="SF010_001527"
     CDS             100..1086
                     /locus_tag="SF010_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8230425.1"
                     /translation="MNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLPK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDAPEMK
                     AMLTYMQWLSQGVPVGAKIEGQGLKKIDFISRAADPKKGKAIYMDKCAVCHQENGLGL
                     KNEDSAGAYYLYPPLWGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAA
                     YMNSQARPIKANRDKDFPDRKVKPLDMDVEPYDDSFSTTQHRYGPYTNMIKK"
     gene            complement(1120..1761)
                     /locus_tag="SF010_001528"
     CDS             complement(1120..1761)
                     /locus_tag="SF010_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8230426.1"
                     /translation="MRKFFCKFVLALVFYSSFALANNSFITLNPSLPNSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1847..3285)
                     /locus_tag="SF010_001529"
                     /pseudo
     CDS             complement(1847..3285)
                     /locus_tag="SF010_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3321..4121)
                     /gene="dsbI"
                     /locus_tag="SF010_001530"
     CDS             complement(3321..4121)
                     /gene="dsbI"
                     /locus_tag="SF010_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG8230427.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKSNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4118..4780)
                     /locus_tag="SF010_001531"
     CDS             complement(4118..4780)
                     /locus_tag="SF010_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8230428.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPETAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1720 a          831 c          706 g         1670 t
ORIGIN      
        1 tttaaagctt ttttcttaaa atgtaattag gttttattga ctttttctaa ataaagtctt
       61 atactgaatt taaattacgc aaaataagga ggaaaattga tgaataaatt ttctatagtt
      121 ttaactttgt tgttatgtgg aagttgtgct ttagccttag atccaaattt ggaaaaaacc
      181 aagagtgcaa caggtattga cctgcctact gctaaatgga atttgcctaa ggctttaaat
      241 gaagatggca ccatagatga aactaaaatg ccaaaaaatt cagaatatag caaaatggtt
      301 attttaggaa ataaaattct taatgaaaca agcaaatatg tgggtccaca ggccaaagat
      361 cctaaaaaaa gatttgcggg aaataatctt tcttgttcaa gctgtcatgc taatggtgga
      421 agtgtgcaaa atcaatcggg ttttgtagga atttgggcaa gatttccaca atataatgcc
      481 agaggagata aagtaattac cttagcagat aggatcaatg gctgttttga acgctctatg
      541 aatggtaaaa gaatgcctag tgatgcgcct gaaatgaaag ccatgctaac ttatatgcaa
      601 tggttatctc aaggggttcc agtaggagct aagatagaag gacagggact taagaagata
      661 gatttcatct caagagcagc tgatcctaaa aaaggtaagg caatttatat ggataaatgt
      721 gccgtttgtc atcaagaaaa tggcttaggg cttaaaaatg aggatagcgc aggggcgtat
      781 tatctttatc caccactttg gggtgatgat agttataata caggagctgg aatgtatcgt
      841 cttatcaaag ctgcttctta tattaaagaa aatatgcctc aaggtgcgcc tgacttaagt
      901 cttgaagatg cttatgatgt agcagcttac atgaattcac aagctcgccc tattaaagca
      961 aatagagata aagactttcc agatagaaaa gttaagcctt tagatatgga tgtagaacct
     1021 tatgatgata gcttttctac aacccaacat cgctatggac cttatacaaa tatgatcaaa
     1081 aaataatttt aaggcaattt ttattgcctt aaaaatttat tatttcatat tgcttaattt
     1141 tttaactaga tcttctaaat cttgcattga attgattgcg cttgggttaa tttgatattt
     1201 tccattaaca acaaaagcag gggtgccata ggttttagct atatcattag ctctttgaaa
     1261 ctcgcttaaa atttctttag cttttggggt atttaaaaaa tttaatactt catttttatt
     1321 tacattcata gcctttaaac ctatgtcgta aaattcatct aaatttgaaa aatttctttg
     1381 cttgtttaaa aaataagaaa caaaataaac atcagcaagt ttatgagata aactatcaga
     1441 ataactcgca tctttaccat tttgctcatc tttgtattga gcaaaggcaa aaagctcatt
     1501 catttctttg gaaaattccc cattcattaa acttacagga tagagtttaa aatgtaaatt
     1561 tggaaaagct tctctcagtt tttcaagagt tccaaattta tgatgattat aacaatgtat
     1621 acatttataa gaaaatgctt ctattacact attttcagag ttgggtaaac ttggattaag
     1681 agtaataaaa ctattatttg ctaatgcaaa acttgaataa aatacaagag ctaaaacaaa
     1741 tttgcaaaaa aatttacgca tattatatcc ttggttaaat aaaattttca aagataattt
     1801 tatttaaaaa aaataaataa gcccaaattt atttttgggc ttattgttat tttttaggat
     1861 tgaatgcttg atcaacacta aaaggcattg cttgataacc cgtgcctgaa ccgctaaatt
     1921 gaatttgaac cgaaggctcc ttagcacccc agttaaattc atcaatttca ggttttggtt
     1981 ccccaagact tacacctttg ctaagatcaa aagccattcc cagctgttgc gctataaacc
     2041 ataatagaat ctttatctgg ttcatattga gttaaagaag ttacaggata aaaccattca
     2101 ttgccatttt tatctacagg ttgcaataaa tatttttgaa attctttatt ccacccttta
     2161 tatgcgccca attcctacct atacctgcta tatctccaaa tttgtcgctt tcatccattt
     2221 tggcaagctc ttcatcgctt aaagttttac ccactttact tgcatctata tttaaacaca
     2281 ctgcactttg atctaaagtt ttgataatag tacttctata aggatctaaa atcttataca
     2341 atctccaatc atcaacaaca ttaccatcct catctacttc tataatagta tcacacactg
     2401 tgcgtacatg cttactatct tggacgcaaa gtatttgttg aagaaataat gcccattttt
     2461 tgcatattgt ccatagcatg agaaaaaatc tatatagaca gcaggtaatt tgcgattgaa
     2521 aatttctctt cccagacatc gtattttaca tatctttgac caaatcccca agttaaagct
     2581 ccatctttgt tttgacgaaa acttatcata attccacgat tgtaaatatt accccagttc
     2641 attagtttat tgttatcata ataccatctg atttcaccct tggtatctta taataaagac
     2701 atttgaattt tcatcccatt ccatagcacc acctacaaga ttattccata cagattatga
     2761 gtctttgcca gattattttc caggagcatt atttactaaa tatagcctat ctgaaaattt
     2821 tggatccatt tttaatactt tcacattttc aaaaagagtt cctctttgat cagtgccttc
     2881 cgcttggttc tatgctagcc catggagttg taattttata aatctcatca atgacttttt
     2941 gacttttacc atttgcggtt ttagtataac ttacctttac tataagaagg ataaagtcca
     3001 aaaataggaa ttccaccata cgtcttagcc attttagaat tcacattatt aagaaatagt
     3061 ttgaccattt gattttttta tatcgcttaa gacataacca ttattcatga taatagcggt
     3121 caaaggagac aatccataag gattcatttt aatcataccc atttgtcctt gaatttgcca
     3181 atctattttc actccactag gaccacccat ggccattaaa gcattaggtg caagtagggt
     3241 agaacccgcc aaaattgcca tgcaaagagt tttgctaagt ctcatgatca atcctttaaa
     3301 attatttaag acatcctatt ttaagagtat cttaaaacga cttgatttaa actagctata
     3361 ttttgattcg gattttttga ttcgcctata aatttaagca ccaaaaccaa agcaacaatc
     3421 accaatgcaa aaattttagc attagattta tttttatcta aaacataggc tataaacatt
     3481 gcaaaaagca cgacaaaaca acataaaaat gctataagac agcaaattgc catattcata
     3541 aactttaaac taggaatcaa ataccaacca ttactataaa gcccattttc aaaatcaggt
     3601 ggagttccta taaaaaattt ttgaaaagca ttaagatgat tataagcatt ttctggaact
     3661 acaggggtat ccatcccgca ttctcctgtt ggcaaaaacc aactaggagc ccatttatac
     3721 aaaggtaaat taaatggata aataggaatt tcacgacatc catctacgcc tgcaaaagga
     3781 ttttcagaat gaaccacttc atggatatga tttaaagtta gacaatgctc caagccaagc
     3841 caaattccat aaaaagctaa gctataagaa aaaattttta taatattatt tgcagggttg
     3901 attaatgcaa tcataccacc tatagccata acaagcatat caaatcttat atacacacat
     3961 tgttcacaag gtttcataaa aagatattct tgaaataaaa aatgtgctat acaagtaagt
     4021 cctatagtaa ctataatcaa aatcaaccaa ggtttgcgcg tatcttgcca tttggaaagt
     4081 gaaaaatttc tgcaattatc tttcattttt atataactca tttttgcttg ctaagttctt
     4141 tagtaatttc aatcaaagcc tctggagagt tgattgcact tggaacgatt tgatattttc
     4201 cattaacaac aaaagcaggg gtgccataat tttgcgaaat aggattggca atttcataac
     4261 tttttaaaag ctctgcagtc tctggagttt ttaagaaatt ttcaaaatca gctttactta
     4321 cattcattgc ttttaaaccg acactataaa aagcttcagg atttttacca ttttcccatc
     4381 tttgtttttt cttaaaatat gcattaaaat aagcttcagc aactttatga gttaagctat
     4441 ttttatccgt aggatcaatt ttatttacac catccttaaa tgtcgcaaaa gcaaaaattt
     4501 cattagcttg ccttccataa tctcccatag aacttacagg ataaaattta taagttaaat
     4561 taggtaattt ttctttaact ttacccatgg tattaaattt gtgatgatca taacaatgag
     4621 tacagtgata agaaaaaatt tcaatcaatg aattatcagc gttagcaata ggatttttaa
     4681 gaattacata ttctttacct tcacttaatg cgctagcact tatacctgct aaaaaagcac
     4741 atacaacaat agatcttgct aattttactg gaaatttcat taccctctcc ttgaaatttg
     4801 gttttgataa aactttttat taagttttta tgtaataaat attataaaac tattaaaata
     4861 aaaatattct taaaaaattt tataactaag aatatttact ttaactaaaa atcaagaata
     4921 ggggatt
//
LOCUS       DARGEX010000103         4763 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.103, whole genome shotgun sequence.
ACCESSION   DARGEX010000103 DARGEX010000000
VERSION     DARGEX010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4763
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.103"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..428)
                     /locus_tag="SF010_001532"
     CDS             complement(<1..428)
                     /locus_tag="SF010_001532"
                     /inference="COORDINATES: protein motif:HMM:NF015210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG8230429.1"
                     /translation="MSNSFLNTETLTLNDLFGKDRTYSVPKYQRNYSWSEDQWEDLWC
                     DIEDLEKSNYPHFMGSIVLQETKDAKNIDIIDGQQRLTTLSIFMSAIIFYIDNLVKKD
                     KDKTDNEKRKEIFNKKYLGYESSTTLKIVPKLTLNNTNNN"
     gene            complement(440..2749)
                     /locus_tag="SF010_001533"
     CDS             complement(440..2749)
                     /locus_tag="SF010_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG8230430.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANIFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCVNQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFAILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGSLEILKQSFDDLQREIYLN"
     gene            2879..3955
                     /locus_tag="SF010_001534"
     CDS             2879..3955
                     /locus_tag="SF010_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG8230431.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(3957..4406)
                     /locus_tag="SF010_001535"
     CDS             complement(3957..4406)
                     /locus_tag="SF010_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEG8230432.1"
                     /translation="MLELIGELSLQNYMGEWLEMARKPAFFQKSCLNSKAKYELKYKN
                     GVPYVEIENFCSKENENSSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFIDSEYK
                     VAIVGSPDKKYLWILARNIIDEKSIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(4399..4740)
                     /locus_tag="SF010_001536"
     CDS             complement(4399..4740)
                     /locus_tag="SF010_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002921808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8230433.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYNLSKRGQSLIPILQAMCK
                     WGEKDKKEKNA"
BASE COUNT         1464 a          834 c          656 g         1809 t
ORIGIN      
        1 aaattattat tagtattatt taaagtaagt tttggaacta tttttaatgt agtagaactt
       61 tcataaccta aatatttttt attaaaaatt tctttccttt tttcattatc tgttttatct
      121 ttatcttttt tgaccaaatt atctatataa aatattatcg cggacataaa aatacttaag
      181 gtagttaatc tttgttgccc atcaattata tctatatttt tggcatcttt agtctcttgc
      241 aatactatag aacccataaa atgtggatag tttgattttt ctaaatcttc aatatcacac
      301 cataaatctt cccattgatc ttcactccaa gaataatttc tttgatattt tggaacacta
      361 taagttctat ctttaccaaa taaatcatta agagttaaag tctctgtatt taaaaaacta
      421 ttactcattt tctctccttt cagtttaaat aaatctccct ttgtaaatca tcaaaacttt
      481 gttttagaat ttctaagcta ccaaattcat cagccaattc tcttacatta cctaaagaac
      541 taagctctat aagtggtttt aaaccatcat caaaatcttt tatgccgtat tcttgatatc
      601 tatttagtaa aaattctata aattttatag ctttttcttt ttgaaagcgt ttcaaaaact
      661 caccattttc tacttgtaaa acacgctctt gccttgtttt tatctcggca ttaaagctta
      721 aatgcgctaa aacatcgtat atatcacaat ctttttgaaa aatttctctt agatctttta
      781 aagcatcttc atcaactcca tcatttgcaa gggcttttaa aaatctttct ctattttttt
      841 gatcactcca aatttcacgc aattttgctt catcatcata atactcacca agctttccta
      901 tcaaaaattc taaaaattct ttagtgctaa gtggcttacc ttgtgctcct acataagtag
      961 ttgtgatatc taaaacctta agttttgtgc cttttaagtg tatggttacg ctcttttttt
     1021 ctttgctttc ttcttttgtt tgttttatat gctctttagt gattttttct ttttcatctt
     1081 gctcttttaa ttcttctatt ttttcaccat cccattttgg atcataaaaa agtttagtcg
     1141 caccgacaaa atcaagtata gcaaaaaagt ctttaccttc ataaacccta gtgccacgcc
     1201 cgatgatttg cttaaattcc accatagaac ctatatttgc tagcaatact atatttcgca
     1261 cattttttgc atccactcca gttgtgagca ttttagagct agtaagtatg acaggatagc
     1321 ttttatcatt atcttgaaac aattttagat aatcaagccc tattttacct tcatcactcg
     1381 taactcttac acaataatca tctcttttaa cgcttttata tttatctata gctcttttta
     1441 cttcatttgc atgagcttga tttacacaaa aaattatggt tttatccata ggatttataa
     1501 gctctaaaat tttcttagcg ataaagtcat tatagtttgg taaaaaaata tttctttcaa
     1561 attcactttg tttataaaag cctttttcaa gctcaccttg tattaaatca tcaggattat
     1621 aggtataacc atcactcaaa gttgttttta tgagtttgac tttataaggg gttaaaaatc
     1681 catcttcaat accactttta agactataat cataaacact ctcaccaaaa tactcataag
     1741 tgtctatatt ttcttctttt tttggagtag cggttaaacc aagctgagtc gcataagaaa
     1801 aatactcaag tacagctctc cagcttcctt cttcgtttgc tccacctctg tggcactcat
     1861 ctatgatgat aagatcaaaa aaatcttttg ggtattgaag ataaaatttg ctctcttgtt
     1921 cttcttgggt gttttcttgt tcttttgaat ttgcagctaa gctttgataa attccaaaga
     1981 aaatatttgc atttgttatg atttttccat catttttctt tatttcttca gcactaattg
     2041 ccttacaatc actttctata ggattaaatt ctcctaaggc ttgatctctt aagctcactc
     2101 tatcacataa aaatagtatt ttaggctttt gatctttgtt ttctttattc catcttgcct
     2161 ctaacaaacg atagcacaaa ttaaaagcta tggttgtttt tcctgtgcct gtagcaagag
     2221 tgagtaaaat tctatttttg ttatttataa tggcttctat gactttatct attgctattt
     2281 tttgataata tcttaattct ttttgcggta tatacataac attttgggtt aaaagcctgt
     2341 attgccattc tttgacattg ccataaatcc tatcaaaaag ctctttagga cttggaaatt
     2401 tatctatgta tttaccacta tgacttctta tatcgtattc ataaattttt tctccattgc
     2461 tactatatac aaaaggcaca tttaaaattt ttgcatattc tatgccttga gataaaccat
     2521 ctaaaggatc tttactaaat tttttagctt ctattatagc aaggttgttt ccttcatatc
     2581 taagcaaata atctgcaaat tttctttgtg ctcttttacc acctaaaagc tttctaccat
     2641 ctgtaaaata ataatttctt tttatatttt cttcattcca agaactatca taaagctttg
     2701 catctataaa ttttactcta gtatcatctt ctgaatacaa attttgcatt tttaccccaa
     2761 agtgaaatta aattttataa ttatagcatt tatactaatt tttaaaaaat tattttcact
     2821 cttgacttat agctactcta atgttttata attataaaaa atcaaaaaag gagcaaaaat
     2881 gcaatacaaa attttagaaa acaatcgcat cgcaagtaaa ggctatgcaa tgcttagcaa
     2941 ggatgcgaaa tttacaccct ttgaatttag ccgccatgct attggcgata atgatatttt
     3001 gattaaaatc ctatatgcag gcatttgtca tagcgatatt cacaccgcaa gaagcgagtg
     3061 gggagaagct acttatcctt gcgtgcctgg gcatgagata gcaggagaag ttatcgctgt
     3121 gggtaaaaat gtgagtaaat ttaaagtagg agattacgca ggggttggtt gtatggtaaa
     3181 ttcatgcggt gagtgcgatg cttgcaaacg ctcacaagag cagttttgcg aaaatggcaa
     3241 aaccatcttt acttacaata gttgtgatgt atttcatggc aatgaaaaca cttatggggg
     3301 ctactcaaac aacatagttg taagtgaaaa atttgccgtt tgtgtgccaa aagatgcacc
     3361 gatggaaaaa gtcgcgcctt tgctttgtgc aggaattacc acttactcgc ctttaaaatt
     3421 ttctaagata aaagaaggct caagcgttgc tatagcagga tttggcggac ttggtatgat
     3481 ggctgtaaaa tacgctgtga aaatgggtgc aaaggttagc gtttttgcta gaaatgaaaa
     3541 caaaaaagcc gatgctttgg ctatgggtgt aagctcattt tacacaagct gcgataaaaa
     3601 cgctgtaaaa gaacgttttg atttaatcat ctcaaccatt ccaacgcctt ataatcctgc
     3661 tatttatttg gatttgctta aatttggcgg tgaaatggcg atagtgggtt tgccacccca
     3721 cgaagttgct ccaagtatca gcgtgataac ctttgtacat aaggcaggta aaaaggttta
     3781 tggttcgcta attggtggta ttgctgaaac tcaagaaatg cttgattttt ctttaaaaca
     3841 cggaatttat ccagaaaccg agcttatcac accgcaagaa attgataaag cttatgaaaa
     3901 tctaacctca ggtaaggcta aatttcgcta tgttattgat atgacaaaag aataatttaa
     3961 tacttatcaa aaactacatc gctaatgtca aatccccttt gcttagcgat gtttaaaagc
     4021 tcttttatgc ttttttcatc aattatattt cttgctaaaa tccaaaggta ttttttatca
     4081 ggactaccca caatggcaac tttatactcg ctatcaataa aaataatttc ataatttacc
     4141 ttattaaaca ggttcataaa gatgttaaat ctcactgcta attgcctatt tgaaacgatt
     4201 tttgccttgc cttttatact tgaattttca ttttctttac tgcaaaaatt ctcaatctct
     4261 acataaggaa cgccattttt gtatttaagc tcgtattttg cctttgaatt taggcaagat
     4321 ttttgaaaaa aggctggttt tctagccatt tcaagccatt ctcccatata attttgcaaa
     4381 gaaagttcgc caattaattc aagcattttt ttcctttttg tctttctcgc cccatttgca
     4441 catagcttgt aaaataggaa ttaaactttg tccgcgtttg gataagttat attctacctt
     4501 gggtggaatt tgagcgtatt cttttctgat aattaaacca tcgttttcta gttctcttaa
     4561 ggtattggtt aaagttttaa aagatatgga gcttaaaaag cgtttgagtt cattataacg
     4621 cacgatttca tagcgaaata agcagtataa aatactcatt ttatattttc cattaattaa
     4681 tgctagagta tagttaaatc cacattcttc gaaattgcac ggagaattct ctttagtcat
     4741 ttaacattcc tttagtatag tat
//
LOCUS       DARGEX010000104         4661 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.104, whole genome shotgun sequence.
ACCESSION   DARGEX010000104 DARGEX010000000
VERSION     DARGEX010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.104"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(145..741)
                     /locus_tag="SF010_001537"
     CDS             complement(145..741)
                     /locus_tag="SF010_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8230434.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            815..1555
                     /locus_tag="SF010_001538"
     CDS             815..1555
                     /locus_tag="SF010_001538"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG8230435.1"
                     /translation="MDWQKITEKMCDFIQEKVKNFQSQGVVLGLSGGIDSALVATLCK
                     RTLKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLKT
                     LDSSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            1559..2485
                     /locus_tag="SF010_001539"
     CDS             1559..2485
                     /locus_tag="SF010_001539"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG8230436.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFNLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKSFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            2482..3894
                     /locus_tag="SF010_001540"
     CDS             2482..3894
                     /locus_tag="SF010_001540"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG8230437.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEEFFKKALKSYESFDDKNTPISLQKIAEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKSIKKEILDWMQK"
     gene            3891..4610
                     /gene="kdsB"
                     /locus_tag="SF010_001541"
     CDS             3891..4610
                     /gene="kdsB"
                     /locus_tag="SF010_001541"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG8230438.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMVSCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
BASE COUNT         1681 a          566 c          826 g         1588 t
ORIGIN      
        1 ttttacatgg gcagatttta taaaattttt tatcattaaa ttgatttttc tttttatttc
       61 ccaaaaataa accaaaaagg gcaaaaagat ttaaaaaaat aaaagcatat aataaaattt
      121 gatctaattc cattttaata taccttaaaa atatctaagc caagagggta gatggacttg
      181 ctcttctttt aaagtagttt cttgtccatg tcctggcaaa agtttaaaat cttctttgta
      241 agtcataact ttttctaagc tttgtttcat taaatttgca tctgaataag gaaaatccca
      301 tcttcctatg cttctataaa ataaaaaatc tccactaaac atgatatttt tacctacaat
      361 ttctatcata gtgcaacctg gtgtatgtcc tggtaaaaag tgaaatttaa agtcaagtcc
      421 gcctatagaa atgatatttt catcatcaat caaataatcc gctttgctag gcataaaacc
      481 ttgattaaaa ggatcttcaa gcataaaagt atcattttta tgaatataaa tggggatttg
      541 ataggcttgt tttacttttt cattatccca aacatgatcg taatgtccgt gagtgtttaa
      601 aatcgctaaa ggatttttta catgtttttt gataaaattt agcgcatcaa aaccaggatc
      661 aattataatt tctccatgct caccaaataa aatataacaa tttgtctcat aagctccaca
      721 agcttgtttg ataatttgca ttttttacct ctttaataaa aaatttgcct taaataaata
      781 taattataca ttaaattttt aaaaggcaag ctttatggat tggcaaaaga ttacggaaaa
      841 aatgtgtgat tttatacaag aaaaagtgaa aaattttcaa agtcaaggtg tggttttggg
      901 gcttagtggt gggattgatt ctgctttagt agcaacgctt tgcaaaagaa ctttaaaaga
      961 gaatgttttt gctcttttaa tgccaactca aatttcaaat aaagccaatc ttgaagatgc
     1021 tttaaggctt tgtgcggatt taaatcttga atataaaatc atagaaattc aaagcatttt
     1081 agatgctttt ataaagcaaa gtgaaaatac tactctagta tctttgggaa attttgcagc
     1141 gcgtattaga atgagtttgc tttatgatta ttctgccttg aaaaattctt tagtcatagg
     1201 cacttctaat aaaagcgaat tacttttggg ttatggtacg atttatggag atttagcttg
     1261 tgcttttaat cctataggat cgctttataa aagtgaaatt tatgccttag caaaatacct
     1321 taacttgcat gaaaatttta tcaaaaaagc tccaagtgcg gatctttggg aaaatcaaag
     1381 cgatgaagcg gatttgggtt tttcttatgc aaaaatcgat gaaggtttaa aagccttaga
     1441 aactaatgat gaaaagcttt taaaaacact ggattcttct ttgattgcca tgctaaaaaa
     1501 tcgcatgcaa aaaaatgctt ttaagggaaa aatgcctgaa attttggaaa tttaaacaat
     1561 gagtgaagaa aaaaattatg aactttggct tgataattat ttttttaagc ccaatttttg
     1621 gcaaaaatgc cttgctttta tacttttacc tttaagtgtg ctttatgctt tttttgcgat
     1681 tttaaatact ttttttcgta aaaaaatagt ttttaaaaaa cctgttatta gcgttggtaa
     1741 tttaagtttt ggaggtaatg gaaaaacccc gctttgcaaa gctatagcaa gggaatttga
     1801 tggcgttttt atagtgctta ggggctataa aagaaaatct aaaggtttgt ttgttgttaa
     1861 aaatcaaaat gaaattttat gcaccttagc acaaagtggc gatgaagcta tggagtatgc
     1921 ttttgaagaa aatatcaaag gtgtgattgt gagcgaagat agagtaaaag gtattgaaaa
     1981 agcttttgag ttgggagcta aaatcgttgt acttgatgat gctttttcta aatttcatat
     2041 taaaaaattt gatattttac ttgaaagtaa aatcaaacct tattttaatt ttaatttgcc
     2101 aagtggggct tatcgtttgc caaaatttta tgaaaaaagg gctgatttta ttgcattaga
     2161 aggcagggat tttgtgcgtt attcttttgt aaaagaaaat ccaaaggctg ttttggtaac
     2221 tgctattgct aaatctttta gattgtatga gcattttatc aaagcaaggg cttgttattt
     2281 ttttaaagat cattatgagt ttaaaaaaga agaactagaa aatttgctaa aaaaacataa
     2341 ttgcgataca ctaatgctta cttttaagga ttttgttaaa gttaaagatt ttggttttaa
     2401 atgtcaaatt atagaattaa atatagaatt aaaagattcg ttaagagaaa aaataaaaac
     2461 ttatatcaag gagtttgaac agtgaaattg gtcgagagta gaaatgtaaa taatgtatca
     2521 agttttaagg aagctttgat taacccaaac gctccagaag gagggcttta ctcaccttta
     2581 aatttaccta tttttgaagg agaaaaatat gccaatttgt cttataaaga ttttgcttta
     2641 aagcttatag aaagttttgg ttttggcgaa gaagagtttt ttaaaaaggc tttgaaaagt
     2701 tacgaaagct ttgatgataa aaatacgcct atttctttgc aaaaaatcgc tgaaaaaacc
     2761 tatattaacg agctttggca tgggcctaca agagctttta aagatatggc tttacagcct
     2821 tttggcgtgc ttttaagcga attttcaaag gataaaaata ttttaattat ctgtgctaca
     2881 agtggcgata caggacctgc aaccctaaaa agctttgaaa atgcaaaaaa tgttaaagta
     2941 gcttgtatgt atccaaaagg tggcacaagt ggagttcaag agttgcaaat gcgagcttta
     3001 gataaggata atttgaaagt ttttgccata gatgaggatt ttgacgcagc gcaacgcact
     3061 ttaaaagaat tgcttttttc aaaagatttt caaaacgaaa ttaaagcttt aaattatgag
     3121 ctttgcgcag ctaattctgt aaattttggg cgtattttat ttcagattat ttatcattat
     3181 tatgcgagtt taaaactttt taatgagttt ttagaagaag tgcaaattat cgttccaagt
     3241 ggaaattttg gcaatgcttt aggggctttt tatgctaaaa aaatgggagc taaaatttca
     3301 aaaatcaaaa tcgcttcaaa tgcgaataat attttgagtg aattttttaa tcatggcgtt
     3361 tatgatttgc gtgaaaaaag tcttaagaag actatttctc cagctatgga tatacttatt
     3421 tcatctaata tcgaaagact tttgtttgcg aaatttaaag ataaaagaac caaagaactg
     3481 atgaatttgt tgaaaaatga gagatatttt aaacttgaaa aagaagaatt gcaaagttta
     3541 caagaagatt ttgaggcgga tttttgcacc gatgaagaat gtatgcaatt tatcaaacaa
     3601 agcaagattt taatcgatcc gcacaccgca acttgtttta aaatgcttga tcctttaaaa
     3661 cctagtatta ttacctctac agcagaatgg acaaaattta ctccaagtat gataaaagct
     3721 ttatacgata gggattctaa gaatgaaaaa gaagatttaa aatttatagc taaagagttt
     3781 aatgtccaag ttaaagatga aattttggct ttatttgact tgaaaaatag cgatgaaaag
     3841 gtatttgaag ccaaaagtat aaaaaaagaa attttagatt ggatgcaaaa atgattatta
     3901 ttcctgcaag attaaaatca agtcgttttc atgagaaaat tttatgtgat gtaggtggag
     3961 tgcctatgtt tgtggctact gcaagaaggg taagtagtgt ggatgaagtt tgtatagctt
     4021 tagatgatga aaaggtttta agtatcgcta aagaatatgg tttaaatgca gttttaacaa
     4081 gcaaaaatca tgaaagcggt acggatagga ttaatgaagc ttgtaagaaa ctatctttaa
     4141 aagatgatga gattattatc aatgtccaag ctgatgagcc ttttatagaa tgtgaaaatt
     4201 tattaaaatt taaagaattt gcaagttctt gcttggataa aaaagctttt atggtgagtt
     4261 gttataaaaa aatcacccaa gaagaagcta tggatcctaa tctggttaaa gtgctttgcg
     4321 ataaagaagg gtatgccttg tatttttcaa gagctaaaat cccttatgaa agagaaaatt
     4381 acgaggaaag ttttaaaggg catttaggta tttacgctta tagtgtcaaa gctttaaggg
     4441 agttttgttc tttatcaagt tctgcacttg aaagagcgga aaaattagag cagttaagag
     4501 ctatagaaaa tggtaaaaaa atcaaaatgc ttgaaatatc aacaacaagc atggggattg
     4561 atactaaaga agactatgaa agggctttaa aaatttattt agaaaaataa ctccacccca
     4621 aaacgaaaca gattttgctt atattatttt aatatattta g
//
LOCUS       DARGEX010000105         4618 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.105, whole genome shotgun sequence.
ACCESSION   DARGEX010000105 DARGEX010000000
VERSION     DARGEX010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.105"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..3036
                     /gene="cas9"
                     /locus_tag="SF010_001542"
     CDS             82..3036
                     /gene="cas9"
                     /locus_tag="SF010_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEG8230439.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNLPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCVYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKKKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            3033..3923
                     /gene="cas1"
                     /locus_tag="SF010_001543"
     CDS             3033..3923
                     /gene="cas1"
                     /locus_tag="SF010_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG8230440.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3916..4347
                     /gene="cas2"
                     /locus_tag="SF010_001544"
     CDS             3916..4347
                     /gene="cas2"
                     /locus_tag="SF010_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG8230441.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
BASE COUNT         1870 a          542 c          782 g         1424 t
ORIGIN      
        1 actgaaaagt ttatgtttgt ttaaaaaatg atttttgtat tataattata cacaaatcat
       61 aaatattaaa aaggatctag tgtggcaaga attttggcat ttgatatagg aataagctct
      121 attggctggg catttagtga aaatgatgag ttaaaagatt gtggagttag gatttttaca
      181 aaggctgaaa atcccaaaac aggagaatcc ttagccttgc caagacgcct tgcaagaagt
      241 gctagaaaac gccttgctag acgcaaagca aggctaaatc acttaaaaca tttaatcgca
      301 aatgaattta agttaaatta cgaagattat caaagctttg atgaaagttt agccaaggct
      361 tataaaggat ctttaattag cccttatgag ttaagattta gagctttaaa cgagctttta
      421 agtaagcaag attttgcaag agtgatttta catattgcaa aaaggcgtgg ctatgatgat
      481 attaaaaata gtgatgataa agaaaaaggt gcgattttaa aagctatcaa gcaaaatgaa
      541 gaaaaactag caaattatca aagtgtgggc gagtatcttt ataaagagta ttttcaaaaa
      601 ttcaaagaaa attccaaaga atttacaaat gttagaaata aaaaagaaag ttatgaacgc
      661 tgcatagcgc aaagtttttt aaaagatgaa ttaaagctta tttttaaaaa acaaagagaa
      721 tttggctttt ctttttcaaa aaaatttgaa gaagaggtgc ttagtgtagc attttataaa
      781 agggctttaa aagatttttc tcatttggtg ggaaattgta gtttttttac cgatgaaaaa
      841 agagcgccaa aaaatttgcc cttagccttt atgtttgtag cgcttacaag aattatcaat
      901 cttttaaaca atcttaaaaa tactgaagga attttatata caaaagatga tttaaacacg
      961 cttttgaatg aagttttaaa aaacggcact ctaacttata aacaaacaaa aaagcttttg
     1021 ggtttaagtg atgattatga atttaaagga gaaaaaggaa cttattttat tgagtttaaa
     1081 aaatataaag aatttataaa agccctaggt gatcatagtt taagccaaga tgatttaaat
     1141 gaaatagcaa aagatattac ccttataaaa gatgagatta agcttaaaaa ggctttagca
     1201 aaatacgatt taaatcaaaa tcaaattgat agtttaagca aattggaatt taaagaccat
     1261 ttaaatataa gttttaaagc cttaaaactt atcactcctt taatgcttga aggtaaaaaa
     1321 tacgatgaag cttgtaatga gcttaattta aaagtagcaa tcaatgaaga taaaaaagat
     1381 tttttacccg catttaatga aacttattat aaagatgagg taactaatcc tgtggtttta
     1441 agggcgatta aagaatacag aaaggtctta aatgctttac ttaaaaaata cggcaaagtg
     1501 cataaaataa acattgaatt agcaagagaa gtaggtaaaa attacagcca aagagctaaa
     1561 atagaaaaag agcaaaatga aaactacaag gccaaaaaag acgccgaact tgaatgtgaa
     1621 aaactaggct taaaaataaa tagtaaaaat attttaaaat taagattatt taaagaacaa
     1681 aaagaatttt gtgtttatag tggggaaaag attaaaatta gtgatttgca agatgaaaaa
     1741 atgcttgaaa ttgaccatat ttacccttat tctagaagtt ttgatgattc ttatatgaat
     1801 aaggttttag tttttaccaa gcaaaatcaa gaaaaactta ataaaacccc ctttgaagcc
     1861 tttggcaatg atagtgcaaa atggcagaaa attgaagttt tagcaaaaaa tttacctact
     1921 aaaaagcaaa aaagaatttt agataaaaat tacaaagaca aagagcaaaa agactttaaa
     1981 gatagaaatc taaacgatac tcgctacatc gcaaggcttg ttttaaacta cactaaagat
     2041 tatttagatt ttttaccttt aagcgatgat gaaaatacaa agttaaacga cacacaaaaa
     2101 ggctcaaaag tgcatgtaga agcaaaaagc ggtatgctta catcggcttt aagacacact
     2161 tggggcttta gcactaagga tagaaataac catcttcatc acgccatcga tgcagtaatt
     2221 attgcttatg caaacaactc tatcgtaaag gctttttcag attttaaaaa agagcaagaa
     2281 agcaacagtg cagaacttta tgcaaaaaaa attagtgaat tagattataa aaacaaaaag
     2341 aagttttttg agccttttag tggttttagg caaaaggttt tagataaaat tgatgaaatt
     2401 tttgtctcaa aacctgagag aaaaaagcca agtggagctt tacatgaaga aacatttaga
     2461 aaagaagaag aattctatca atcatacggc ggaaaagaag gagttttaaa agccctagag
     2521 cttggtaaaa tccgcaaagt aaatggtaaa atagttaaaa atggcgatat gtttagagtg
     2581 gatattttta aacacaaaaa gacaaataaa ttttatgctg tgccaattta tactatggat
     2641 tttgctttaa aagtattacc aaataaagct gtagcacgaa gtaaaaaagg tgagataaaa
     2701 gactggattt taatggatga aaattatgag ttttgctttt ctttatacaa agatagtttg
     2761 attttaattc aaactaaaga tatgcaagag ccagaatttg tttattataa tgcttttaca
     2821 agctctactg ttagtttgat tgtttcaaaa cacgataata aatttgaaac gctaagcaaa
     2881 aatcaaaaaa tattgtttaa aaatgcaaat gaaaaagaag taatcgcaaa aagcatagga
     2941 attcaaaatc taaaagtatt tgaaaaatac atagtttcag cacttgggga agttacaaag
     3001 gctgagttta gacaaagaga agattttaaa aaatgagtta cgatgaagct tttaaaacac
     3061 tgcttattag ctctaatgcc aagctaaatt tagagctaaa tcatcttgtg attaagcaag
     3121 atgaaaatat agccaaattg tttttaaaag atataaatat catcgtttta gaaagcttac
     3181 aaataagcat tagttccgca ctttttaatg cctttgcaaa gtataaaatt atcttattaa
     3241 cctgcgatga aactcatagt ataaatggcg tttttactcc ttttttaggg cattttcaaa
     3301 gtgcaaaaat cgcaaaagag caaatgaatg taagtgctca aaaaaaggct attttatggc
     3361 aaaaaatcat taaaaataaa atcctaaatc aagcctttat cttaaaaaaa cacaataaaa
     3421 tagagcaaag caatgagctt ataaatttgg ctaaaaaagt aagcttaaat gatagtaaaa
     3481 atattgaagc tgttgcggcg gcgctttatt ttaaaacttt gtttggtact tctttttcaa
     3541 gagatgagct ttgctttgaa aattctgctt taaattatgg ctatgcaatc attagggctt
     3601 gtattattag agcagtttgc ataagtgggc ttttgccttg gcttggcata aagcacgata
     3661 atatttataa ttcttttgcg ctttgtgatg atttgataga agtgtttagg gctagtgttg
     3721 atgattgtgt tttaaagctt aagggtgaaa gtgagttttt aagcaaagat gacaaaagag
     3781 cgttgattgg caatttacaa agtaaaatca attttgatgg gcaaaattat cctttaaaca
     3841 gagcgataaa tcattatgtg gcaaatttta aaaatgcttt attgtatgaa gatgaactaa
     3901 agatagtgaa atttgatgat tgaagataaa tttatgcgtg tgcttttgat gtttgatgtg
     3961 ccaactaaaa gtaaaaaaga gcaaaaacta gcaagtaaat ttagaaataa tcttataaaa
     4021 ttaggttatt ttatgctgca atttagtgtt tatatgcgta tttgcaaggg tttaagttct
     4081 gcaaaaagtt ctattgaaaa tgtaaaaaag attttgccac cttatggaaa tgtaagggct
     4141 ttaatcatca ctgaaaagca atttgataaa atggagcttt tgcttggtgg catagttttt
     4201 aacgaaaaag ttaataacga aaccaattta acgctttttg atatagatag tcatggagaa
     4261 tttaaatata aaaattcaaa taatgaagaa attcaaataa acaaaaaaca agaaaaatat
     4321 catcagcaaa atttatttga attttaaaag cggttttagg ggattgtaac cccgcagagt
     4381 cccgcaaact ctttatttta gtcccttttt aaatttctta tgagattata gcataatttt
     4441 tgctattttt catgaaaaaa ccccgaaatt ttcattatct ggtaaatatc tattttacca
     4501 taaagaaatt taaaaaggga ctaaaacaat acatttaaat gggatagatg gaaatcaatt
     4561 ttaccataaa gaaatttaaa aagggactaa aactattcca aataatttcc tctttaaa
//
LOCUS       DARGEX010000106         4610 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.106, whole genome shotgun sequence.
ACCESSION   DARGEX010000106 DARGEX010000000
VERSION     DARGEX010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4610
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.106"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..676
                     /locus_tag="SF010_001545"
     CDS             <1..676
                     /locus_tag="SF010_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230442.1"
                     /translation="YISTDTVSNPLKLGASDYIQKPFMIEELIRKIKHYQDFRKLSIL
                     NKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFNYANECDITLSFID
                     LTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNVILHTNSNTDDLKI
                     NCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLGISRKSLWEKRKKY
                     EISKKK"
     gene            654..1814
                     /locus_tag="SF010_001546"
     CDS             654..1814
                     /locus_tag="SF010_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8230443.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1819..2319
                     /locus_tag="SF010_001547"
     CDS             1819..2319
                     /locus_tag="SF010_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG8230444.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGIFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            2398..2661
                     /gene="rpsT"
                     /locus_tag="SF010_001548"
     CDS             2398..2661
                     /gene="rpsT"
                     /locus_tag="SF010_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG8230445.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2680..3747
                     /gene="prfA"
                     /locus_tag="SF010_001549"
     CDS             2680..3747
                     /gene="prfA"
                     /locus_tag="SF010_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG8230446.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3761..4516)
                     /locus_tag="SF010_001550"
     CDS             complement(3761..4516)
                     /locus_tag="SF010_001550"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG8230447.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVIHVGASGNPHKFLHKH"
BASE COUNT         1719 a          682 c          688 g         1521 t
ORIGIN      
        1 ttatataagt acagatacag tttcaaatcc tttgaaatta ggtgctagtg attatattca
       61 aaaacccttt atgatagaag agctgattag aaaaataaag cattatcagg attttagaaa
      121 actttcaatt cttaataaag cttatcaaag ctatatcaaa tcaagattag aaacaatcaa
      181 aattccagag tataattata aaaaattaaa acttccattg atattaaaat ccaacaagca
      241 aagcagtgct gatgcttttg tttttaatta tgcaaatgaa tgtgacatta ctctttcttt
      301 tattgattta acatctacaa attcagttga aaaagttatg aaacttccca cagaaaacaa
      361 tctcttattt ttgagtaatt ttcaagcatt aaaagcaaca gaaaaggaaa aactcctaga
      421 ttttatacaa aacaaaaatg ttattttgca taccaattca aatacagatg atttaaaaat
      481 aaactgcatt aatttaaatg ataatgaaaa aaatatcaat agcaatgaaa ttttaactat
      541 agatgagtat gtaaaatatg ttattataaa ttaccaaaat atatttcctg atactgatct
      601 ttcaaaaaaa ttaggcattt cacgtaaatc tttatgggaa aaaaggaaga aatatgaaat
      661 cagcaagaaa aaataaaaac attaccatag atcaaaatga atttggcatc ttgtcactta
      721 ttaaagaagg tttgctaggt acttgcactc atttaatgaa tgaaaaagaa gtcaatgaaa
      781 tcattaaatc aggaaaattt aaaggagaaa gttttcccta tcccttaagc tttgcaccaa
      841 aaaatgctga agaagcacta aatgatataa aatctggcga tagaatcgat ctcatactag
      901 atgaaaaagt agtaggacat atagatttta aaagccaatt taaaaataat aaaaattttt
      961 ctgatatttt cagtcctaac acttgctctt tagaagacat gggaacaact tgcataagtg
     1021 gaaaaataga aatttataat tctcaaattg aaaaaataaa agaaaatttt caacaaatca
     1081 aaaacaatct taatgcacaa aaaattactg ctatagtttc aagttttgat cctttgcatc
     1141 gtgcccatga aagaatgttt cgttggacta ttgataaagc agatttagtt gtaatttttc
     1201 ttgtagaatc ttttgatgta aatgggtttg aattcgaact taaagaagca tatttgaaaa
     1261 aatttattca aaactatctt ccaccggata gaattttcat ttttccatta aaaaatatta
     1321 atatttttca cgctcattta aatcctggct tagaaagtat tatcgcaaaa agtctaggtt
     1381 gtaccaaact agtagtagga caaaatcata caggacttgg aatgttttat gacgataacc
     1441 aaccaaaaac catacttgat gatttttcca aggactatgg catagaagtg atcgttttgc
     1501 ctgaatttgt attttgcgat caatgtcgca tgattgttag cacaagatct tgccctcatg
     1561 gttgtcatca ccatttgcac tataattctc agtctttaaa agatttacta agagcgggta
     1621 tcattcctcc agcaattttc atgcgcaagg aagtatctag tgttatttta acttctcttt
     1681 ttccaaatag attaaaaaat atgcaaaaaa tttataatga gctttttcca actgatggaa
     1741 ttttagaata caaaaatgat gaagaatttt atcaaaaact tttagaaatt catcaaatgt
     1801 cttatatggt gtaataaaat gcaaaaatta tttttaactt ttttttattc aggttctgta
     1861 aaaaaggcaa gtgggacttt tggtactatc gctgctttaa tacctgcttt ttttatactt
     1921 aaatatctcg ggattaatac tttgttttta ctaagcattt taatttttgt tgcaagtatt
     1981 cgtgttatag atgattatga aaaaaaaaca ggaattcacg atgacaaaca catagttatc
     2041 gatgaggttg ctggaatttt tcttgcttgt gctattgcag caagtgttga aaactcgata
     2101 gtcaatttta ttttggcttt tgttttattc agactctttg acattacaaa accttctatt
     2161 attggtaaga tagataaaaa agtcaaaggc ggactaggtg taatgcttga tgatatgtta
     2221 gcaggattgt ttgctggact tttaagtgcg gtaatttatg gatttttact taaatttaat
     2281 ttagtttttt gggatataaa tttaaaagac ttattttgaa attttgctta aattaattaa
     2341 attttaaatt ttattcttat ataatttagt ctttaatttc aaaaaaggaa aatataaatg
     2401 gcaaaccata aatctgctga aaaaagagca agacaaacta ttaaaaaaac agaaagaaat
     2461 agattctata gaacaagact taaaaatata actaaagccg taagagaagc tgcagcaaat
     2521 ggagataaaa atgctgctaa tgaagcttta aaagtagcta ataaaagcat tcatgctatg
     2581 gtaagtcgcg gtttcattaa aaaacaaact gcttctcgcc gtgtaagccg cttagccctt
     2641 ttagtaaata aaatcgcata attttctata tagtttttaa tgttagctag caaactagat
     2701 ccttttttaa aacgctttga agagttaaat tctcttctta gcagttctga tataatcaac
     2761 gatatcagta aaatgactac actctctaaa gaacaaaaaa atttagaacc tatcgtttta
     2821 aaagctaaag agtatttaaa aactttagac aatatagaag aaaataaagc tttgctaaac
     2881 gatccagaac ttggggaact tgcgaaagaa gaactaaaaa ctttagaaga attaaaacca
     2941 aagcttgaag aagagattaa aattttactt cttcctaagg atcccaatga tgaaagaaat
     3001 atttttcttg aaattcgcgc aggcgcaggt ggcgatgagg catctttatt tgtaggagat
     3061 cttgtaaaag cttatgcaag atatgctgaa aatcgtggct ataaacttga gattgtaagt
     3121 tctagtgaag gaagtgtagg tggatttaaa gaaatcatca tgcttgttaa aggaacagga
     3181 gcttattcaa gacttaaata tgaaggtgga acgcaccgtg ttcaaagagt tcctcaaaca
     3241 gaatcccaag gacgcgtgca tacttctgct atcaccgtgg cagtaatgcc agaagttgat
     3301 gatatagaaa tcgaaatcaa tccaaacgat cttaaagttg atgttatgcg atcttcagga
     3361 catggtggac aaagtgtaaa tactactgat tcagctgttc gtatcactca tatccctaca
     3421 ggtatagttg tagtcaatca agatggaaaa agccaacaca aaaataaaga aagtgcgatg
     3481 aaagtcctaa aagcaaggct ttatgaaatg caagagagtg aaagactggc aaaagaaagt
     3541 gaagcaagaa aatcacaagt aggaagcgga gatagaagtg aacgcattcg cacttacaat
     3601 tttccacaaa atcgtatcag cgatcataga ataaatctta ctttatatcg cttagatgcc
     3661 attatgcaag atgggctttt tgatgaaatc atagaacctt taatcactca tcatcaagcc
     3721 caagctttac aagaacaaaa tttataagat tttatataaa ttaatgctta tgtaggaatt
     3781 tatgtggatt tccactagca cctacatgta taacatttcc attttctata tcataagctt
     3841 ggccaaaacc ttttacaaag cgtccttttt taaattcaag ctttactaga tgaaaatcaa
     3901 gcatcttgcg tatagtttta atgcctcctt ctcctccggt ttgtttttca aactcatcat
     3961 aaatttgatc aaatctttca cctctctcta aaaagcttgc atttactcta tagcgcaatc
     4021 ttttgcgaag tatcacagaa gcggctttac tctcatcctc taaaaacatt atttctatat
     4081 tgtttggatt tactttgatg ttgttaaaat gttcgcttac ttcacttata taaatataat
     4141 ttccccattg tgtgcttaca aaaggtgcat acgagcaaac aacttctcca tttgcattta
     4201 aagttgccaa agctacagaa ttaaaactta gcataaattc atttaattct ttttctacgc
     4261 cactaaaatt ttgctcgctc tttgcactca tgcaaaggga tattatagca tctttaatcg
     4321 tgttttcatc ggctttttta ggaaattcca ctcgtaaatt ttctttatca ttgtaaacaa
     4381 gatctaagcc attaaaatca acacttttta gaaaaacatc ttgtacttgc tcaataccac
     4441 caaatttttt acaaagatcg actaaatttg atttatgatg atcattcata tgagaaataa
     4501 tgctttcaaa attcattttt atcctttctt gattttaaaa taaaatatta aaaaaaatgg
     4561 tatcaattat caaattaaaa agcacttaaa atatataaat tatctatttt
//
LOCUS       DARGEX010000107         4508 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.107, whole genome shotgun sequence.
ACCESSION   DARGEX010000107 DARGEX010000000
VERSION     DARGEX010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4508
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.107"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..501)
                     /locus_tag="SF010_001551"
     CDS             complement(<1..501)
                     /locus_tag="SF010_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8230448.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLK"
     gene            complement(501..1031)
                     /locus_tag="SF010_001552"
     CDS             complement(501..1031)
                     /locus_tag="SF010_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG8230449.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1043..2131)
                     /locus_tag="SF010_001553"
     CDS             complement(1043..2131)
                     /locus_tag="SF010_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG8230450.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2143..3057)
                     /gene="ilvE"
                     /locus_tag="SF010_001554"
     CDS             complement(2143..3057)
                     /gene="ilvE"
                     /locus_tag="SF010_001554"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG8230451.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQNTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     PVTKKLQDAYFNVVYGRNEKYASMLTYI"
     gene            3232..3438
                     /locus_tag="SF010_001555"
     CDS             3232..3438
                     /locus_tag="SF010_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG8230452.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            3435..3890
                     /gene="bcp"
                     /locus_tag="SF010_001556"
     CDS             3435..3890
                     /gene="bcp"
                     /locus_tag="SF010_001556"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG8230453.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIVQIYSNVRVKDHALKVLESL"
     gene            3890..>4508
                     /locus_tag="SF010_001557"
     CDS             3890..>4508
                     /locus_tag="SF010_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG8230454.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECELYRVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIA"
BASE COUNT         1498 a          640 c          750 g         1620 t
ORIGIN      
        1 ttttaaggtg tgataaaatt caggattatt aaaagttgga ggaaaaggaa cgctagctct
       61 aaattcttta taggtattac ccgggagtgt gtctatgatt tctatagtat aagaaacact
      121 tgtattttgc attttagcgt tacggatatt tttatcattg aaaatttcac ctcctacttg
      181 ttgttggttt aatatgctaa gtatcaaata gcattttttg atttcaaatt tagtaagatt
      241 ttgaactttt ccacttacta taacgctttc atgtcttaga tctcttgtgt aggttagttt
      301 gctaagatcg gcttgagtgg tgaattgatt gattgtcaga aaaatagaat atatcaaaag
      361 tgcggtaaaa atagtagcta tggtataaga aatcaaagcc atttcttttt gtttgacttt
      421 tagaaagatt aaaatacaaa tcaaggcaaa gcaaataagt aaaatgataa aagctataat
      481 atgaaaaatc gtaaaatgca ttaaaaacac tccgaaacta agcgtatggt atagttattt
      541 tcatagttaa aattttcaaa agcaattctt tgaaattggg ttgcgttttt ctttagatct
      601 ttaatttctc tacttttttg tctaaaaggg ataaatttct ttttatattc ttctatgata
      661 ttatcattag gtattttatc tgcaaaaatt ttagctgtaa ttttacattc tttaaaatta
      721 ttttttgaat tatttgtaat gttaaaatca acaattaaat catttgagct ttgtatcatt
      781 ttttgatctg taatagcgat ttttcgagtt cttacttcat tgtctattag tttataccca
      841 tagatataaa ctaaaaaaca aataataata tcaaatgcaa taataaaaag tgctgctata
      901 ggtctatggc gtaaaaatac gcaaagaagt aaaacacaag tgaagagaaa aaaaactaat
      961 aaaatcagca tataatctac taaatataaa tgagtagtgt aaaaaagcac gatttctctt
     1021 agtttctcca cttgcgtatc ctttagttca tgttggcagc actttgcttt ttagcatctt
     1081 tagtatcaac ccaaatgttt ggcactgctc cacctggagt taagaaaatt ttagcatctt
     1141 gattgacttt taaggcttca ttaaattctt tttgagtttc aatttgtttt aaatttagca
     1201 aaggggtgtt taagctgttt gcgatttctt tattagaata agcttgtgca tctgcttcta
     1261 tcttaacagc catagcttta cctttggcgc tgattatggt tgcatttgct tccccttcag
     1321 ctaaagcagc tttttttaag gcttcttgat tagctctttc tacttcatat ttagttcttt
     1381 cagcctcttg ttttgcaatt tgcacgcgtt cgatttgttc ttttactttt gaaggtaaaa
     1441 taatttctct aagttgtaca gcgcgaagtt ctacaggttc atttggttgg gcttctatgg
     1501 tttttcttat accttcttct atttgagcgg ctattgtatt acgattagta ggaagttctt
     1561 cggctgtata ttttcctaca acacttcgca ctacatcacg aacaactgga tcgataattt
     1621 tattttccca atttaagctc caagtagcta tagtttgagg aacttgcaga ggatttaagc
     1681 ggtattgtac tgtaacatca atagatacag gcaatccacg agagtcaagt acagaaatgc
     1741 tatttttatt aataacacct gaacctgaag ataaattttc attacttccc tctatagaag
     1801 catagttgat ttgtcttact ctagtatcga ttatggttat tttttgtaca aaaggtaaga
     1861 aaaagtgaag tcctggttct aatggatttg ggtcatattt acctgttgtt gatttaatcc
     1921 ccatttcccc agaatttatc accataaaag gttttgcaac gattaaaaat aagataataa
     1981 taatcacccc ataaacaaat ggagagaatt tcccaaaacc tttaaaatta aattctggtg
     2041 ctttgaaatt gaaattttga cggttgttgt ttccgttatt gttagaattt ctattttttt
     2101 tattgaaata atcatttaaa tcagctggca tttatttcct ttttaaatat aagttagcat
     2161 agatgcgtat ttttcattgc gtccataaac tacattaaaa taagcatctt gaagtttttt
     2221 ggttacaggt cctcttaaac catttcctat tattcttgca tcaatattgt taataggtgt
     2281 gatttcagcg gctgttccgg taaaaaatgc ttcatcagca gtataaactt catctcttga
     2341 aattctttgg cgaagcacag tgataccaag atcatgagct attttaagca ctgtattttg
     2401 agtaatgctt tttaaagaaa aatcatttgg aggtgtgatt aaaaccccgt cttttacaat
     2461 aaagaaacat tctcctgttc cttctgcgat aaaaccttct tcatcaagca ttaaagcttc
     2521 ttcatagcct gcttcaatag cttcaaattt tgcaatttga gagttaagat aatttgcact
     2581 tgctttagct tttcccatgc atgatttaac actatttctt gcaaaagacg aaatttttac
     2641 ttttatgcct ttttctaaac cttcttctcc aaggtaagca ccccattccc aagctgcaat
     2701 tccaactctt acaggagctt ttatatgata aagtcccata actccatcgc ctaagaaaat
     2761 caaagggcgg atatagacat tgcttttaaa gttgtttgct tttaagagtt caatttgtgc
     2821 attttcaagc tctttttgag aaaaaggaca atttaaaaga gtaatttttg cagactctaa
     2881 aagtcttttg gtgtgatctt caagtctgaa aattgctaag cctttatctg ttttataggc
     2941 tctagttcct tcaaaaacag cattgccata atgcaaagaa tgggttaaaa agtgcaaagt
     3001 tgcatcttta aaatcaacta attttccatc catccaaatt ttatctgctg agatcatttt
     3061 ttacctttta tagttgttta tttcttaaaa aatattattt taagaataaa tcgggatttt
     3121 atcaaaaata tactaacaat aagcttttat taaattaagg ttttttatta aaaaaaatat
     3181 taggtatttt ttgaaataat tatgaaaaat tatcgttaaa aaggagaaat tatgccatta
     3241 gtaaatatta aattagcaaa gccgtcttta agcaaggaac aaaaagcgga gcttatagct
     3301 gatattacca aacttttaag cacgaaatat aataaaagta aagaaagagt tgtggtggtt
     3361 ttagaagatg tagaaaatta tgatataggc tttggcggag aaagcgttga agctatcaaa
     3421 gcaaaggcaa ttaaatgagt ttaaacatag gagataaagc acctcagttt gagcttttaa
     3481 atcaagatgg ggtaaaaata gcattaaaag attttattgg caaaaaggtg attttgtatt
     3541 tttatccaaa agataatacc ccaggttgca ctacagaagc ttgtgatttt agcgcaaatt
     3601 atgataaatt tggtggtaaa aatgcggtga ttattggtat cagtcctgat agcgtggcaa
     3661 gtcatgaaaa atttatctct aaatttgatt taaaacatat tttacttagc gatagtgaaa
     3721 aagaagttgc taaagcttat ggagcttggg ggcttaagaa aaattacgga aaagaatacg
     3781 aaggtcttat tcgttctact tttgttatcg atgaaacagg taagattgtt caaatttata
     3841 gtaatgttcg tgtaaaagat catgctttaa aagtgcttga aagtctttaa tgttagtgca
     3901 tatttgttgc agtgtggata gtcattattt tattgaagaa cttagaaaga cttatcctga
     3961 tgaaaaaatt ataggatact tttatgatcc aaatatccat cctttaagcg aatacgaact
     4021 aagattttta gatgtaaaaa gatcttgtga taaacttggt attaagcttt ataaaggtga
     4081 gtatgagtat gaaaaatggc ttaatgctgt gcgtggttat gaagatgagc ctgaaaaggg
     4141 tgcaaggtgt gaaatttgct ttgatgtaag aatgggatct agtgttaaat ttgctgctaa
     4201 aataggagaa aaaaagctta ctactacgct tttaaccagc cctaaaaaag atttagaaca
     4261 gttaaaaaat gctttacaaa aagaatgtga gctttataga gtagagtttt tagctcctga
     4321 ttttcgtaaa aatggcggta ctcaaagaca gtttgcttta gcaaaaaagg aaatgcttta
     4381 tcatcaaaac tattgcggct gcatttatgg gcttaaaaaa caaaaacaag ataagaattt
     4441 tattgatgaa ttaatgtctc ctgtaaataa gcaaatttta cctgcaagta tagaagcaag
     4501 aatagctc
//
LOCUS       DARGEX010000108         4496 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.108, whole genome shotgun sequence.
ACCESSION   DARGEX010000108 DARGEX010000000
VERSION     DARGEX010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.108"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..200
                     /locus_tag="SF010_001558"
     CDS             <1..200
                     /locus_tag="SF010_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8230455.1"
                     /translation="SKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSED
                     SFFEQGVKFEVISFDKFSLGF"
     gene            complement(197..928)
                     /locus_tag="SF010_001559"
     CDS             complement(197..928)
                     /locus_tag="SF010_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG8230456.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLIMIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(903..1652)
                     /locus_tag="SF010_001560"
     CDS             complement(903..1652)
                     /locus_tag="SF010_001560"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG8230457.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1649..2254)
                     /locus_tag="SF010_001561"
     CDS             complement(1649..2254)
                     /locus_tag="SF010_001561"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG8230458.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            2315..3304
                     /locus_tag="SF010_001562"
     CDS             2315..3304
                     /locus_tag="SF010_001562"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG8230459.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            3875..4276
                     /locus_tag="SF010_001563"
     CDS             3875..4276
                     /locus_tag="SF010_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230460.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDFRFYYTKKLYFIQP"
BASE COUNT         1396 a          614 c          723 g         1763 t
ORIGIN      
        1 tatctaaaat tgcttatatt tcaagtccaa ctttagatat tgatttgatt aaattacgtg
       61 ctaagaaaat tttaccaaag gctttagaac ttggaatttt tcatgtgatt tttatcactc
      121 tttcaagcga ggatagtttt tttgagcaag gggttaaatt tgaagtcata tcttttgata
      181 aattttcact tggattttag gtgttgtttg agtttgtatc gtatttttca aggttgtatc
      241 gtttgatgat ttttgtaata agattgatat aatatccctt gcgttcagaa taagaatcta
      301 aagttttaat agcctctagt cctgttatct ctttgccttc gcttgcaaat ttagctcttg
      361 catcgcgaaa cttttcataa gcaaaatgac gatttaaatt taaaacataa gagtaaacac
      421 tatcttgcag actatcaaaa atcttaattt tatgtttttt atctggatgt cttaaatcag
      481 gaattaaacc tttctcaccc caagtccatt ctccaaaaag attgtttgct tctcttgcga
      541 agcgactggt acctgtagca ctttcaacta aagcttgggc tatacccatg gattttggaa
      601 ttttttgaat acgtttttta tattctgcaa aatcataaag attttcaata cgatatttgt
      661 tttttatcat gataagtttt tcaagattta tttggtttga agtcctaaag cctgttttgt
      721 aagcatcttt aaaaaaggct tcgataaaag ctctttcttg ttcaattttt ttaaagcttt
      781 gatcaaacat ttcattcatt tttataaaaa aaatttgtct tttttgatct atatcaagtt
      841 tgtaatattc ctctccaaag ccatttttta gatcatcagc aaaaagtggg attagaaaaa
      901 gactaagaaa aattataatt ggcttcaaaa caatacttta cctttccttc aaaaaacaat
      961 tcttcatttt tatatgcaaa ccctacctct tcaccacttt taggagttat tttaacttta
     1021 ttttgtactt ttttatttaa aaatgccaga taaaaacaag cccccattcc tgtgccgcaa
     1081 gctaaggttt catcttcaac tccgcgttca taggtgcgaa cttttaaatg attttcatct
     1141 aaaattttta caaaattaac attggcatta tatttttgtc tcattttttg acaaagcatt
     1201 gtatcaaatt catctaaatt ttgacaaaaa tgtactagat gtggaactcc agtgttgcaa
     1261 agttgccaag tttttcctaa ttcttcaaaa gtattttgca cgctttttat tttgcctaaa
     1321 gatacttcaa ctttatcttg atttaccttt gcttttatta ctcctgcacc ggttaaaaaa
     1381 ctcatgttag gatttatttt gttaatatga tgtgcaaaat gtgccgcagc ccttgagcca
     1441 tttccacaca tagcagccct tgagccatcg ttattataaa attcccattc aaagtcgtat
     1501 ttttcatgag gcaatatcac gataaagcca tccgcaccta taccctcata acgattacaa
     1561 agttctttag ctaaagcact tctatcttct tttctatcag catttgttat gacaaaatca
     1621 ttcccacttg cacaatattt ataaaatttc acatttttcc tttagaaatt tcttgtatta
     1681 ctttaacaca ttcttgccta aaatcggcat aagaattagt atttttaatg ataaaatctg
     1741 cttttttaag tttttcttca atatctattt gagaatcaag tcttgctttt gcagcttcta
     1801 agctgagctt atctctttgc atgattcttt taaggcttaa ttctttaggt gtgtaaatta
     1861 caatgacttt gcctaaattt tcataagcac cgctttcaaa aaaaagagga atttctacaa
     1921 aaaaagcttt attttcctta tctagaattt gcatttgttc taaaatttta gctcgaattt
     1981 taggatgagt gaaattttct aaggtttttt tagcttcttt gttgttaaaa acaatttttc
     2041 caaggatttt tctatcgatt ttcttttctt ttgtgagtaa attttttaag ctaaagggag
     2101 aaaaaatctt ttcaagttct aaagcatttt catctaaaat ttcatgagcg attttatctg
     2161 cactaatgct tttaaagcct aaagaattcg ctatttctat aaaggtgctt ttaccacaag
     2221 caattgaagc ggttacaaaa aaagcatttt tcatcttatg ccttattaaa acttttttcg
     2281 ttaaaataac tttttagttc ttaaaggaaa ataaatgaaa atttcatatg aagatgcagg
     2341 cgtaagtata gataatggaa atgcctttgt agaggctata aaacctttgg ttaaagaaac
     2401 ttttaatgat aatgttgtag gtggaattgg ttcttttgct ggtgctttta gaatgccaag
     2461 tggttttaaa aagcctgtga ttttaggtgc aacagatggg gttggtacca agcttcgctt
     2521 ggcaattgat gctaaaaaat atgatactat agggcaagat ttagtagcaa tgtgtgtgaa
     2581 tgatttgatt tgtaattttg ctacgccttt gtttttctta gattattatg ctacagctaa
     2641 gcttgaagta gaagtagcaa aggctgttgt atcaggcatt gccaagggat gtaagatggc
     2701 aaattgtgca ttaattggcg gagaaactgc tgaaatgcct ggaatgtatg caaaagatga
     2761 ttttgatctt gcgggttttg ctgtgggtat ggctgaagaa gatgagattg atagaagtaa
     2821 atttgttaaa aatggtgata ttttattggc acttcctagt tcaggacttc attcaaatgg
     2881 ttattcttta gctagaaaag tactttttga aagtttaaaa ttaaaatttg atgacaagat
     2941 agagggtaaa aatttaattg atattttgtt agaacctaca aggatttatg tgcgtgattt
     3001 tcttacacta aagccttata tcagtgctct agcacatatt acagggggtg gtttagtaga
     3061 aaatttacca cgcgttttac ctcgtggtat gggtgcaact atacgcaaac atcatcttaa
     3121 aactcctgaa attttttata ctataggaca ggctgtagaa gaaagcgaaa tgtatagaag
     3181 ctttaacatg ggagtgggtt tagtaatggt tgtagatcct tctaatgtaa gtaaggtttt
     3241 agaaaattca gatgccttta ttattggcga aatttgcatt aatgaaggta ttgttttaga
     3301 gtgaaaacaa attattatga ttatttatgt gctaaaatgt atgtaatttt gcccataaaa
     3361 gcccataaag acaaactaaa attttatctt tcttatgtaa ataagaaaga taaaattttt
     3421 agagttaatg tgtggaagtg ggcggttttg ataaaaattg ccaaagatga taaaacgaaa
     3481 tatttttgtt cgaatgtatt aaataaaggg taaaatgcac aatttaaatg aagctttgtt
     3541 tcaaaaaaag ataaaagaaa ttcgcttaaa agcaatagcg agtattattt gtgggttttt
     3601 aggtatcatt ccttatcttg gagttttatt tgttcttgcg agttggattt tattttttat
     3661 tgtgctttat gatttaaaaa tctatggtgg tgctaaaaat ttgtttaaga atttccttat
     3721 tagtgtaggg attggatttt ttggtattct tgttaataca agtattttat ttgcaatgct
     3781 aaagcctaga actggcattt ttggtgggct ttattttaat caagataata tttttatggc
     3841 tattgctata tttttagtat tacattttgc tattttggct ttaatttttc cttttttgaa
     3901 agctttttac tatgaaattg ctagaacaac aaagcaaaag tatttcactt atgcttttaa
     3961 taccttttat ttagggcttc ttactttgat tatcggcata ggcttggtgt ttttgctagc
     4021 aagtttggtt ttttggattt tagcgtgggt caaatttaaa gaatttgatg agcaagaact
     4081 ttcaaattta gaagaaagat tggcaaaagc acaaaaaaag gtttttgatt ttgatttaaa
     4141 atggattaaa atcacaatgg cttcatttat aattttaaac ttgctcgttt taacattttc
     4201 gtttatatta gaagttatta gctttgaaga ttttaggttt tactacacaa aaaaacttta
     4261 ttttatacag ccataatcct agctttgctt agtgtgtttt tgttttgtaa aaagataaaa
     4321 aattacaaac tttttattta ttttttcata tggcaaggtt taagtgtttt tggtagtcat
     4381 cttcttttta ttcctgattt tatggtagat caaccaccag aaattatata tggaagttta
     4441 aacataatat taagtctatg ctatattatt tttgcttttt tattttttaa aatttt
//
LOCUS       DARGEX010000109         4487 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.109, whole genome shotgun sequence.
ACCESSION   DARGEX010000109 DARGEX010000000
VERSION     DARGEX010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.109"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            20..337
                     /locus_tag="SF010_001564"
     CDS             20..337
                     /locus_tag="SF010_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8230461.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            416..1087
                     /gene="hsrA"
                     /locus_tag="SF010_001565"
     CDS             416..1087
                     /gene="hsrA"
                     /locus_tag="SF010_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG8230462.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1200..1445
                     /locus_tag="SF010_001566"
     CDS             1200..1445
                     /locus_tag="SF010_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG8230463.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1445..2905
                     /locus_tag="SF010_001567"
     CDS             1445..2905
                     /locus_tag="SF010_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8230464.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDSYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2902..3699)
                     /locus_tag="SF010_001568"
     CDS             complement(2902..3699)
                     /locus_tag="SF010_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230465.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3700..4008)
                     /gene="fliN"
                     /locus_tag="SF010_001569"
     CDS             complement(3700..4008)
                     /gene="fliN"
                     /locus_tag="SF010_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG8230466.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4008..4430)
                     /locus_tag="SF010_001570"
     CDS             complement(4008..4430)
                     /locus_tag="SF010_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG8230467.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT         1673 a          668 c          592 g         1554 t
ORIGIN      
        1 gattgatttt taaagaagaa tgcaaagtca tataaaaata aaatttcact ttaagtgtat
       61 cattggtata ttagatttcg aaagaagaaa aaaacaaaaa attattatca agcttaaagc
      121 taaagcaaat gaatttttaa attatgcaga ggtaattacc aaaattaaaa catggtataa
      181 aaaagaagaa ttttacaccc ttgaagagtc tttagacttt gtaagcttaa atttaaaaaa
      241 agattttcct aatttaacca atcttaacat aaaaattttc aaaccccata taataaaaaa
      301 tgctacagtt ggggttaaat tgaaaaaaaa atattaattt ttttttaaag atatctaaac
      361 atttacttaa gctatgatat aattctttaa atttttctta ataaggatag aacaaatgag
      421 aattttagtt atagaagatg agattagcct aaataaaaca attatagaca atcttaatga
      481 atttggttat caaactgatt cttctgaaaa ttttaaagat ggagaatact ttatcggcat
      541 tagacattat gatttagttt tagcaaactg gactttacct gatggagatg gagcggaact
      601 tgttaacact attaagcata aatctccaag aacttcggtt atgattatgt cttcaaaaac
      661 agacaaagaa acagaaatca aagctttgaa agctggagct gatgattttg ttaaaaaacc
      721 tttagatttt gatattctac tcgcaagaat tgaagcaaga ctaagacttg gcggaaccaa
      781 tgttattaaa attgaagact tagttattga tccagatgag gaaaaaatta cttataaagg
      841 tcaagatata gaacttaaag gaaaaccttt tgaagtttta acgcacttag caagacattc
      901 ggatcaaatt gtatccaaag aacaactttt agatgccatc tgggaagaac ctgagctagt
      961 aactccaaat gttatcgaag tagctatcaa tcaaattcgt caaaaaatgg ataaaccatt
     1021 aaatatatct accatagaaa cagttcgtcg tagaggatac cgtttctgct tccctaaaaa
     1081 atcttaacaa ttttgcacct tcggtgcaaa aaatttatct ttatttctat ttttatattt
     1141 tatttaagtt tggttattgt ataaactaaa attatttttt aaatttttga aaggttatga
     1201 tgtctctttt aattacaaaa gactgcgtat gttgtgatgc ttgcagagaa gaatgtcctg
     1261 atgaagctat ttatgaaaat agtccaattt atgtaataga ccctgatctt tgttcagagt
     1321 gcgttaatga tttttcagag cctgcctgta ttgttgcttg cccatatgaa tgtatcattc
     1381 ctgatcctga taatgtagaa actatagaag aattaaaact caaacataga gatagagaat
     1441 tttaatggca aaaaaaacag ccgttgttga tcttggctca aactccatta gaatggtgat
     1501 ttttgaaaaa acttctagat atggttttta tacaacttgc gaatacaaac gcaaagtaag
     1561 acttggagaa aatgcttata ataatggcaa aattctccaa gaagaagcca tgcaaagagc
     1621 cgaagatgcc ttagcttttt tcaaacaatg cgctttaaag cataagtgca aaaaaatatt
     1681 tatagtaggc acatcagcct taagagatgc cccaaattca aaaaatttca ttaaaagaat
     1741 caaagataat ctgtctttaa atatacgctg tatagatgga aaaagcgaaa gttacttagg
     1801 tggtcttgca gctctaaatt tattaagtcc ttttaaagat ggaaccactt tagacatagg
     1861 tggtggttct agtgaattgt gtttaataaa aaataataga attatttctt gcatatctct
     1921 tgatattggc actgttaggc taaaagaatt gttctatgat actggaaaaa tggattcttt
     1981 agaagaattt ataaaaccaa ttttagaaca aattcctaaa gaattttgca atcaaaacct
     2041 tattgcaata ggtggaagct taagagcaat atctaattcc atcatgcaaa aaaattccta
     2101 tccactgaaa aatttacatg attttcgcta tatgctagat gaagaaaaag gacatatttt
     2161 aaaaattttt aattcaaact tagactcttt aatcaatttt ggcataaaaa aggatcgttt
     2221 tgataccatt aaagagggta tatttatttt tttaaagatt gcggaaaaaa taaaagccaa
     2281 acaagttatc acgagtgggg ttggaatcag agaaggagtt tatttgcaag atttgcttcg
     2341 tcctaaaatc acttttccac caaattttaa tcctagctta aaatgtttac aagataaatt
     2401 tttacaatca aaacaaaaaa ataaaactcc acattttgct ctgcaaattt ttacaaccct
     2461 taaaaatctt cataaactta acgatagcta taagcatact ttactaaatg ctgccaaatt
     2521 atgccatatt ggagaatatt taaatttcta ttttgctaat gaacactctg ctcattttgt
     2581 actaggtgga ttaaattatg gattttcaca taaagaaaaa gctttaattg ctagcattat
     2641 taagcttaat ggaaaaaaag ttaaccctta taatcttgaa ccctataagc aacttttacc
     2701 caatattcat accatttcat ggcttaattt tattttgtgc ctagctaaaa ctttaagcac
     2761 aaatgaagat aagattgatt ttgcttttgc aaacaatact ctttatatat atcaagaaaa
     2821 caaaattctt aatttaccca aagatgagct caaaaaaatt gcaaaaccag ctaccatagc
     2881 attagcaatc aatcaaaaaa tttaagattt tttacctttt tgacgctgct ctataagatt
     2941 ttgaattctt tttttattct cttcaaaaaa agaatcaaaa tttttctctg ttttttctgt
     3001 atgttttatt gtttgttcct ctggaatttc aacactttct aaaagcacat tggaattacc
     3061 tattatcatt gtataacgtt tattagcgtg atcaaaaata acaagttgat tatttttatc
     3121 taaaaatctt tggaaaatca tagtaaaatc tctagaaaca ttgttatttt tataaaccat
     3181 agtcttttta aaccaccaaa gcactattaa caaaataact aaaattagca ttactaagat
     3241 ataatttgta taatcatacc cttctaaact tgtacttttt ggtttaggca ttaattcttg
     3301 agaattattc acagtagttg taggtacaga ttcgatattt gcttttcctt gctctatagc
     3361 tcgtatcctt actccaaatt tatcattgat agagctaagt tctaaattaa tattttgttt
     3421 gttttgtagc ataatatagg tattattatt tttagaacta atactaattt tatctacaag
     3481 ttgagagtta agttctttta attcatcttt agaatacgtt aaatcactaa aagttaaaag
     3541 agttaaattt ttttcttttt tttgagaaat cttgccatta taggcattat caaaagaaag
     3601 cattaaatct actcgatcat ttctatcgta gatattaaaa ctaatcagct caacactata
     3661 taaaggtaaa attaaaaaaa ataatactag caatctcatt taaatttctt ttttaaagta
     3721 ttgaagcaca gtcttagaat ccaaaatttc attaattctt atagcgagat ttttttcata
     3781 aaccataacc tcgcctttgc caaaaattct tttattgata taaagctcaa cgctttctcc
     3841 agcaggcttt tcaagatcaa taaccgaacc tacttcaagt tttaaaagct ccgctacact
     3901 catatttgta gttccaagct cgcttacaaa atctactgta atatctaaga tatcttcata
     3961 agattgtaaa agcccatgat gaatgttaaa ctctatatca tcgctcatta tttgcaatat
     4021 cctattctaa aataacaatt ttcaaattta taagttaaag cttcatctaa aactatttca
     4081 gaaaaatcaa cttttcctaa atattccgga attccgagtt tatactcgtc atcacccttg
     4141 gcatcattta acaaattttt agcataacct ataatctgat tggcacattc tttagttaaa
     4201 tcgcaccagt catcttcttt aaatttttca tcattaatta aaatttctgc aatttttttt
     4261 aaaaattctt ttggaaaaaa taaataaaaa ttacattctc cttcgctttt gcccatgata
     4321 ggaatactcg ctccataaag ttcaccgctt atatcttgag ctgcttcaat gcgaagtctt
     4381 aagatatgct cgcaaaaatg agtgatggaa tactcaagaa tctttaacat aactaccacc
     4441 tttataaaaa acttaattta aaattatagt aaatataaaa taaaaat
//
LOCUS       DARGEX010000110         4462 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.110, whole genome shotgun sequence.
ACCESSION   DARGEX010000110 DARGEX010000000
VERSION     DARGEX010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.110"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..382)
                     /locus_tag="SF010_001571"
     CDS             complement(<1..382)
                     /locus_tag="SF010_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8230468.1"
                     /translation="MADAHENEQRKGFWEFLQALKKGKISTPQLILMGDIFDLLIGEI
                     SATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKKVKIFNLQKQPIKLNLHTS
                     KGNNLVLNSAFIKLAHGDIFLPPLL"
     gene            complement(419..904)
                     /gene="greA"
                     /locus_tag="SF010_001572"
     CDS             complement(419..904)
                     /gene="greA"
                     /locus_tag="SF010_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG8230469.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIARAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(916..2010)
                     /locus_tag="SF010_001573"
     CDS             complement(916..2010)
                     /locus_tag="SF010_001573"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG8230470.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDAVLCIDSPAFNI
                     PFAKALKKAGNKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            complement(2107..2859)
                     /gene="peb3"
                     /locus_tag="SF010_001574"
     CDS             complement(2107..2859)
                     /gene="peb3"
                     /locus_tag="SF010_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG8230471.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3564..3746)
                     /locus_tag="SF010_001575"
                     /pseudo
     CDS             complement(3564..3746)
                     /locus_tag="SF010_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778094.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3783..4295)
                     /locus_tag="SF010_001576"
     CDS             complement(3783..4295)
                     /locus_tag="SF010_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8230472.1"
                     /translation="MRTWSLSGVFIGYMGYYLVRNNITLSTPFIQNQLNLSKSDIGTI
                     TGSMLIAYGISKGAMSVISDKAGPKKYMALGLILCALVNVLLGFSNSFYAYVGFVIAL
                     GVFQGMGVGPSFITLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAAFLG
                     VSLADFNETH"
BASE COUNT         1515 a          807 c          621 g         1519 t
ORIGIN      
        1 gcaaaagagg tggtaaaaaa atatctccgt gagctaattt tataaaagca ctatttaaaa
       61 caagattatt acctttactt gtatgcaaat taagctttat gggctgcttt tgtaagttaa
      121 aaatttttac ctttttaaaa aaacaagaaa gattaaaatc atgattgcct tctaagtata
      181 taatttcaat ctttaaggct aattcttcta aaagttctat gtaaggttta gcaaattcat
      241 gtgtagcaga gatttcgcct ataagtaaat cgaaaatatc acccataagt atgagttgag
      301 gggtggaaat tttacctttt tttaaggctt gtaaaaattc ccaaaatccc tttctttgtt
      361 cattttcatg agcatccgcg attaaaatcg ctccattttg tagtaaaatt ttttatcctt
      421 aaaattttaa aggctcataa tttatagaaa ggatttcaaa ttcactctca ccttttggca
      481 aacgcacttt aaaatcatcc ccttcttttt tcccaagcat agctcttgct attggagatg
      541 cgatggaaat ataaccctta tctaaatttc cttcgcaaat tcctactaga gtatatttgc
      601 tttctttttc tgtatccaaa tccatgatca caacacttga accaaatttc acactatcgt
      661 gttcatagct cgaaggatcg attacttgag ctcttgctag caagtcacta agctctgcaa
      721 tacgactttc tatcaaagct tgcttttctc ttgcagcatg gtattcagca ttttctttca
      781 aatccccatg acttcttgct gtatcgattt ctattacaac ggcagggcgt tgattgtctt
      841 ttaaatcttt taattctgcg gctaacttat catagccaaa ttgactcatt ggttcttttt
      901 gcatgattta cccttttata tttcgtttag gatttttgct aaatttttag cacttccaaa
      961 ttgtaaatat tcttttaaaa aatcaacttt agcaaaaaat gccttataat catatttatt
     1021 gtaagcttca tataaattta aaacattgac tttatcttgt aaaaattcag gatttaaagc
     1081 ttcttttcca gcgaaatcac aaaaaatatt tgcaagtcct atatgtttta attttacaaa
     1141 aagttttgcg ataaaaatat cgatagcctt tgccttgtaa gcaagaacaa aaggagttcc
     1201 cactaaagct gcttctaaag tagctgttcc actacaaata aaggcaaaat cagctttttt
     1261 aagcactttt ggagtgttac tttctatctt aaattcgcta atatcaccat aaacttctaa
     1321 tttttcaaga ttaaatgagg gaacgcaaag aattttttca cccttaaatt tttgagaaag
     1381 ttctttaaaa ataggcatta aacgcctaat ttcactacgc cttgaacctg gtaaaaaggc
     1441 tatagttttt tcatcatctt tttttgaaaa tgtatgatta atgtcttctt gatttttaaa
     1501 ttcttttatc tcatctaaaa gcggatggcc tatataggtg cttttgttaa aaaattgatt
     1561 atcaaagggc aaaatagaag ctaaaatatc aaaatgactt tctatgatag gtatgcgacc
     1621 ttttttccac gcccaaactt gaggcaagat ataataaatg cgtggaattt tattgcctgc
     1681 tttttttaaa gccttggcaa aagggatatt aaaagcggga gaatcgatac ataaaactgc
     1741 gtccattgtt tggcttaaag ttagattcac taattctttg atcgcttttt ttgctttgaa
     1801 aatcaaaggt aaaacttcta taaaacccat agcactaaat tcatgtgagc tataaagtgg
     1861 tttagaattt aaatcaaatt ctttgcataa actctcatca taaatcccat gaagttcaaa
     1921 ttcaccaaaa tcttttttat aagcttttaa aacttctttt aaatgcaaat ttgctgaagg
     1981 ctctaaagca caaactaaaa aggttttcaa aaaatttcct tatcaatatt ttaaacattt
     2041 tatcttattt tggcttaatt aaaagaagtt atgcaagaat acacgctaaa aagcgtgtat
     2101 gaaggtttat tctctccagc cgtatttttt aaaaatttct ttagcttcct tagaacttaa
     2161 ataagcaata aaatcttgtg tttctttgct cgcaccttct ttagctacca cattaaaagt
     2221 tctataaaca accaaatctt tttctatagc tacggcagtt cctatgtcag gattgctttt
     2281 tgaccagtca atccaagtga tccaagcatc ggcttgatct tgtgcgaaaa gctttcttgc
     2341 acttccacta tttggaacaa aggccacgat attgtttcta aaattttgta tggtttttat
     2401 atcttgagtt ctacctatca tatcttccca aactccagtt ccagaagtat tgctctttcc
     2461 agcaccttca ggcacaacga ttcttacttt tttattagcc aaatctttta aacctttgat
     2521 ttttaaagga ttgccttttt gagtaagtat gatggcttct ctaaaatata aaggcttgat
     2581 tttactcaca ttaaaatctt ttccaaaatc actcgctata gctaaagccg attgatctga
     2641 agcgccaaat aaaatatctg catctttttt agccttttca aaccaagtcg cttgagggcc
     2701 aaaatttaca tttactttaa cgcctgtttt ttcgctatat ttgtttgcta tatcttttaa
     2761 ggccgtgtgt gggccacctg gtccgtaaag gtttacatct gcatttgcca tactaaaagc
     2821 taaggcacat gcaccaaata aagtaataat ttttttcata gtatttcctt ttatgataaa
     2881 tttttattga ttgaaggtaa gattttagaa attgtatgtt aataaatagt tataatgtaa
     2941 caaaaatatt attaaatcta acttttgctt ggtatttttg caagcaaaag ttaaaattgt
     3001 tattgatgct tctttttagc gctaaaatga cataaagtag aacaaagtat acaaagaata
     3061 caagcactaa ggagcatgat aagaccagca ttccaactac catagtaatc cacagcccaa
     3121 cctatagctt ttgttccaag tgaagcgccg actacataac tcataaagcc acgaaatcct
     3181 acacaagatc ctactgcaaa agcaggaacg acttccatag tttgcacact tgctaaaaat
     3241 tgtggtatat agactaaaca ccccgccata gctgcaaaga aaataaccat ataaagatta
     3301 tttgaagtaa aatatccaat aatcataaag aaaataatca ccatggcgcc tatagcagga
     3361 ggcattctat agcctttaaa aattttatct gaaatatatc ctgcaagtaa agtagaaggt
     3421 atagcagccc attcaaaaag ccaaaaggca atacctattt gttctttatt aaagcctttt
     3481 gtttctagca agtaaatagg aagccaagaa ataagcccaa aacgcaccat ataaacaaaa
     3541 gtatccatcc aagctacata ccaagcattt ttatttttaa ggacataatg ataaaaaatt
     3601 tcaagaccgc ttaaatttgg actttctaca gctttaattt cttcggtttt aatacctctc
     3661 atttcgttga tttcgctaat atcaaccaaa ccttcatttt taggacttcc tttgactgca
     3721 taaagcatat aaaggctaat aagcacagca caaaaagcag gaacataaaa atgattgata
     3781 tgctaatgtg tttcattaaa atctgctaag cttacgccta aaaatgctgc taaagcaaat
     3841 ccagaaagcg acactatagg agcaactatc ccgcctccta tattatgtga gatattccaa
     3901 acggccgtgt aaattcccct ctctttttta ggataccagt ttgcaagagt gataaaagaa
     3961 ggacctaccc ccataccttg aaaaacccca agcgcgataa caaaacctac ataagcgtaa
     4021 aaagaatttg aaaaaccaag taaaacattt acaagagcac ataaaataag acctaaagcc
     4081 atgtattttt taggaccagc tttgtcgctt ataacgctca ttgcaccctt gctaatcccg
     4141 taagctataa gcattgagcc tgtgattgtt ccgatgtctg atttactgag attaagttga
     4201 ttttgtataa atggagttga aagagtgata ttatttcgca caagataata tcccatatat
     4261 cctataaaaa ccccacttaa actccaagtt ctcattttgt aatatctagg taaaatttcc
     4321 taaagaggaa atttaatagc ttttgcctta ggtttgaaaa aatcaaacat atttaaacca
     4381 tccttactaa ctttatattt ttatagttta aataatgtta atcgatataa aataaaaaaa
     4441 taattaaaaa taatacgaaa tt
//
LOCUS       DARGEX010000111         4443 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.111, whole genome shotgun sequence.
ACCESSION   DARGEX010000111 DARGEX010000000
VERSION     DARGEX010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.111"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..493)
                     /locus_tag="SF010_001577"
     CDS             complement(<1..493)
                     /locus_tag="SF010_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEG8230473.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKF"
     gene            624..1270
                     /locus_tag="SF010_001578"
                     /pseudo
     CDS             624..1270
                     /locus_tag="SF010_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
     gene            1421..2821
                     /locus_tag="SF010_001579"
                     /pseudo
     CDS             1421..2821
                     /locus_tag="SF010_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2975..3106
                     /locus_tag="SF010_001580"
                     /pseudo
     CDS             2975..3106
                     /locus_tag="SF010_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087681.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
     gene            3433..4053
                     /locus_tag="SF010_001581"
     CDS             3433..4053
                     /locus_tag="SF010_001581"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230474.1"
                     /translation="MGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLS
                     NTLNVGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYV
                     LQTNQSIKFYSKQDLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTA
                     QKQIVSRVGNTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            4119..>4443
                     /locus_tag="SF010_001582"
     CDS             4119..>4443
                     /locus_tag="SF010_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8230475.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVKLKDILKDYPVK
                     ISCYELNIKDEDGDFPLFDPFNLIIRAAHACEENNNDFSILDYLFDEYGLSLKDPKYN
                     FAEIYQ"
BASE COUNT         1761 a          613 c          554 g         1515 t
ORIGIN      
        1 taaatttata atcattattt tctaaaatct cttttaactc tttgtttttg tcaaaattta
       61 tacttgtttt tcctctaggt ttaatttcaa tttcatcaaa atgattgcgt ttttcaatat
      121 cttctaagta ttttttattt tctttaatgc ttgcttcaat gctttttgca tccacaaatc
      181 taaattctaa attaccgatt ttaaaaatat cgcctatgct gattattatt tcatagccac
      241 ttggcattct agaaaaggac ttattataat aaatgtcaga atcttcaaaa gccgcaattg
      301 taaaagatcc ttcttcataa gatactatgg catgggtatt tttgatttgt tctagtttat
      361 cttgaatacg aaaagtgcaa tcatcaccgc ttcctatagt tccacccttt gtgttaaata
      421 caaatgtttt agaaccacta atacattcgt cataattctc aatagcaatt cctatctctt
      481 ctttttctat cattgtttat ttacccctgt aatattttct actattttaa gattatttaa
      541 aatataaact atattattta attcactagc accgttaata atttcaaagt caaaatataa
      601 gtttttatta ttgttaaata taatctctat tctttgattt ctttaatcat tatttgcttt
      661 ggatattttt tgatgtaata agcttaaaaa attatccacg atcttttaat gaaaatttta
      721 aagattctat ttcaaaaatt ttatttagca tgttgggaat taaagaatac gatattgcaa
      781 aaaaatattt accatttgca cctttactac taagtttaag acgacctaaa acacacattg
      841 aaagagtttt acaagtcaat tttaaactta aggataaatt atcaattatt gaaaatttac
      901 cccatcaaat tttaatttca aattcgcaaa aaaataactt aggaataaag aacaatattt
      961 taggaaataa ttttatattg ggcgataaat ttatctctta tcaaaacaaa atagcgatct
     1021 atataaagga tatttcatat caagaagcgg ttaaatttat gccaatggaa ccaaacacga
     1081 tgatttaaaa aatagcataa tgtttttaac aaataatgaa ttttgtgttg atttatatct
     1141 taaaatcaac tattcttcag aaatgaagtt tgtgttagga gaagaaaata ctgccaaact
     1201 tggttgggca aaaattttag gtaatacgca aaaaaaatat acaatagtat atatgaaact
     1261 atgtgaataa gctgacacaa aaatatgttt aaaaaaatca caacctctct tcacccataa
     1321 accataccct aaaataaact ttattttacc cactttatgc taaaataaat cacataagct
     1381 tataggctat taatcatcaa caaacccaaa aggatcatca atgtccctta attcttacat
     1441 gagtcttaat atatcaaatt ctacttcaaa tcccctaccc tttaaaatca ctaaagccct
     1501 catcaaagaa agtcttgaag agcttttttc tatagaatgt gaaggctttt ttgaaagttt
     1561 agaacaagat ttattttctt taaatacttt aaccaatgct tcatctcatc caagcacccc
     1621 tacaactttt aattttcatc ctaatgtttt aatcgatcaa gaagctattt taagtatcca
     1681 taatccttat gagaataata ccttaaactt tgataacaat gaagtaaaaa actataaggg
     1741 aattatcact tatataaaat atctaggtat taatcatgaa agtgctttaa atattaatga
     1801 tagcacttca aatactaagc aaatacaata caagcatttt ttttctttta agcttcaatc
     1861 agtcttgata agactttctt taaataaagc caatcgtatt tatactcata ctaatattat
     1921 agaagtgatt aaacaaaccc ttggttttta tcaagatatc ttacataaag aaattgatta
     1981 ttctaatata cattttaatt atgaagaaca agaactcatc tctcaataca atgaaagtga
     2041 tttagacttt attacaagat taagccataa taatggaatc tttttttatg aagatgagaa
     2101 cactatttat ttttgtgatg tgtataaaaa tgtaaaaaat aaagaaattg agtataatcc
     2161 taatgttaat aatattttaa atcaagcttg tatttcttct atttataaag agcaaagctt
     2221 aagaactaat tcttttacac attctagtat taatgccaat actcctttaa atcttttatc
     2281 tttacactct agtaaagttc cttatgaaca agaacttaat aacaaagctt gttataatga
     2341 acatttttat gagagtgaat attcttttac aaaaagcatt gatttaaaga ctaagccttc
     2401 tcttaaagaa aaaagagcct tagtattaaa tgaaagctta ctagcaaaaa gtaatattta
     2461 tcatcttaac ttaggagatt ttatcacttt aaattataag gagtttaatc atcaagaaga
     2521 aataaaaaat caagatgaag aaaaacaaga taaagcttct ttgcttaaag actttattat
     2581 tatcgctaat actcaaatct taattgatga tgccatctta gctaattcta ttaatactaa
     2641 tgatcattta aatttaaata aatcttattc taatacttta actttactaa aaaagaatat
     2701 tatctttact ccaagtttta aagctaaacc taaagctcct aatagcactc aaggtattgt
     2761 tataggagag agtaaggata tagaaagtga gaggaatact atttatactg atgagcatgg
     2821 aagggttaag gtaaggatta atctttatgc caatcaagaa gaattagata atgatacttt
     2881 tattgcaaat gatatagata taaattcttc taatttatca agcaatactt ataaatctta
     2941 tcatcacact ccttttttaa gagtagcttc tcatatagca agtaatcatt caggtttttt
     3001 tcatactcca agaataggag atgaagtgat tatttctttt ttagatgatg atatagataa
     3061 accttatgta agtggaagtt tgtataatgg ggctacaaca atgccccaat ataattatcc
     3121 aagatataaa agagaaatcg ctacaaatgc attgagttat ttaagcgtag ttcctgctat
     3181 gattgataaa ggtttagata cattaaaact tcaagaaaat actgattatg aattaagctc
     3241 tataaacaat cattatctta ctttggctaa ttccacagta ggagtggata acaccaatgc
     3301 aagagtaagg aatgaaatta ccctaaaaac gacaaagaca aagaagaaat ttatatccta
     3361 gcacaaaaag attataaaga agaaataggt aataattatg agcaaaccat aaaaaataat
     3421 aaaacttcag aagtgggagc cttatatacc gaatttatta ctttaggaca tatgcaaaat
     3481 atcataggtt ttaaaaatgt caatgtagga gctgaatatt tagaaaatac cctactttct
     3541 aaagatacta atgtgggctt aagtaatact ttaaatgtag gaatcagcaa tgaagtcaat
     3601 atcggacaaa accacgaaga aaagatagga aacgacaaaa gagtaataat caataacaat
     3661 ctagagcaag atatcaaaaa tgattttatc caaagaatag gacataacaa aaatgaaacc
     3721 ataaaaggtt cttatgtgct tcaaaccaat caaagtataa aattttattc caaacaagat
     3781 ctaagcatag aaacaaatga gtatttcaaa gctgaagctg atgattctat tagttttaaa
     3841 gccaagaaaa attgctcttt tacagctgat aatgtaaata ctatggcaaa tcaagaaagt
     3901 gttttaacag cacaaaaaca aatcgtttct agggtaggaa atacaactat tacacaaaca
     3961 aaagataaaa ttatactcca agtaggaaca acacaagtga ttatagatag caaaggttta
     4021 agagtaaaag gaggtgattt aagagcggat taaaagcaat tttcttaaaa ttaaaactaa
     4081 aatcataaaa aacccaattt acaaagaaag gaaaaacaat gaaaacctta gaagatatca
     4141 aagctatgag ctatcaagaa aaagatgaat tagaagattt agttcttgaa attatagata
     4201 ataatgattt agttaagcta aaagatattt taaaggatta tcctgtaaaa atatcttgtt
     4261 atgagcttaa tattaaagat gaggatggag actttccttt atttgatcct tttaatctaa
     4321 taataagagc tgcacatgct tgtgaagaaa acaataatga tttttctatt ttagattatt
     4381 tatttgatga gtatggatta agtttaaaag atcctaaata taactttgct gaaatatatc
     4441 aaa
//
LOCUS       DARGEX010000112         4231 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.113, whole genome shotgun sequence.
ACCESSION   DARGEX010000112 DARGEX010000000
VERSION     DARGEX010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.113"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..2478)
                     /locus_tag="SF010_001583"
     CDS             complement(<1..2478)
                     /locus_tag="SF010_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG8230476.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRI"
     gene            complement(2475..>4231)
                     /locus_tag="SF010_001584"
     CDS             complement(2475..>4231)
                     /locus_tag="SF010_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8230477.1"
                     /translation="IFDLKINTHYEINLSKQEILKEEIFKTKNSKMKLKSFELRALQC
                     AFVMDEISHFVRKGLKPENIAVITPDESFCEFLRLFDKDNMLNFASGISIKESLFYQK
                     FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFKY
                     FEKLLALFLENEKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSLSDVG
                     GGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRREN
                     LQRFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDFFYETHIHQKAYLNALKLDY
                     EGIKPNLTPIKAPILKHNPFEFPLSCSRFNLLENQKRTYYYRYILNLAEPRVLSEESK
                     AKNQGNFIHKMLEIYYKNYSNNDFDIKVFANLLNKEYQKYNISELDLEVFKLKFIQFA
                     KNEKEHFSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNLIIDYKSGKVP
                     SNSYQLAFYQALYDENASVGFYDLNSMQILHQKAKSLDELRERLKDLVLMSKEEIEFE
                     NEQDEYCPYKLIYKKELK"
BASE COUNT         1479 a          704 c          426 g         1622 t
ORIGIN      
        1 aattctttta aaaagctttt caaaatcact ctcatctaaa aaatgtctaa atttactctt
       61 gcatctttga gtaagtattt gaaaattttc acccttagga agttttaaat tttgcataaa
      121 aaagtgaaaa gcatttccaa aatatagttc tttactatca agcctttctt cgctttgaat
      181 ttcttgcaag gtaatttttt caaatttttg caaagtttga atgctttctt ttttaacgct
      241 taaaatttgt tctttgcttt ctaaaaaacc tctctcttga gaatgtatat ttaaaaatcc
      301 ccccttaaaa taacttggat aatttccatt tacactttct tcatttcttt ttatgatgat
      361 caaactttcc ttagctcttg taaaagccac ataaagttta ttaatatcat cttcataatt
      421 tgctcttgta atattttctt taaaaagagt ataaataggc tctttagtaa gctctcgaat
      481 tttatcttta atatggagtt gccaaccttg attgatatca tattcaagca tgatatcttc
      541 attgtttgaa ttgtttttag ataaactatc aagtaaaatc acatgatcaa attccaaacc
      601 cttagattta tgcacactca taatactaat tcccatattt tgttcgctta ctattttcaa
      661 agcacaaggc tcaaataaaa gctttaaaaa attctcctta gttttagcat attcgataaa
      721 ttgtattaaa gcgatatcat ttaaatcaag ttttaattct tttattaaaa aaagtacatt
      781 ttccatagca ttttttgaaa aatcaagggt aatttttctc ggctcaaaac ctaaaagttc
      841 ctttaaaaat accaagtaaa actcatcacc aaaaatacaa tatttagcat attctaaaac
      901 aagtcttaca cttgctttat tttcaagcaa aacattactt tgagtaaaag caggaatatt
      961 ttgctctctt aaaaaatcca aaaccatatc cgcatcgcta tttttccaac acaaaataca
     1021 aatatcatca taagaaatat ttttagatct taaaaaatta atttgctcaa ataaagtttc
     1081 taaagtcttt tccttaattt cttgggcttg gtttttaacc ttttgttcct tagactccac
     1141 aatacgcaca aaaccgcctt ttttactttc taaggcaaat tgttctttat aatctttgat
     1201 tttttcttta aaagtttcat taacaaaatc aaccaaaagc tctttagaac gataattagt
     1261 atttaaatta tcacttttaa tttgactaaa ttcttgtttt aacaaatcaa ataattcttt
     1321 ttttccttta cgaaagcgat aaatactttg ttttttatct cctacataaa aaaaagtgcg
     1381 atttttctta accccttctc ctgaaacaag ctcagcgatc aaagggcgta aaatttgata
     1441 ttggatcacg cttgtatctt gaaattcatc aataagcaaa tgcgaaataa aaccatctaa
     1501 acgaaaataa atcatatcct taaattcact ggttattaac tcataaactt ttttactcac
     1561 atcttggaaa tttaaggtat ttttatcttt atgaaatata tttttagctt cactataatg
     1621 atttaaaaga ttcattaaat tagcaatttt ataattttca agctctatgg cataggtatt
     1681 taaagcattt ataagctcca ttctttttgc actaaaatgc aagttagtac tttctaaatc
     1741 ttgtaaatat tttgtacttt caaattttgt cataaaactt gattgcataa acacggataa
     1801 atctaaaact tcacttttaa aattgtcaca caaattttta taatttttta catgagtaag
     1861 acccaaacaa taacttctta actcactata agctttattg atataagctt tagttggatt
     1921 tagaatttta ggacgatttt gaaaataagc attctcataa aatttttcaa gctcgttaaa
     1981 aaaattttct ttctcatcaa ctaaattaat ataataagcc aaatctttta attcatcttt
     2041 tttaagaagt tttaaaaaaa tctctcttac atcaagcctc tcttcactca ttgtaaaatc
     2101 actacttaag cccaaattta aagcaaaaac acgcaaaatt tttccgaaaa aagcatcaaa
     2161 agtactgatt tttaactctg ttcttaaaaa ttcttctttt ttagcatctc ttaaagaaat
     2221 aagctcttct ttatctttac ctaaaagctt gcaaagttca ttgcattcac tggttttatt
     2281 ttctttttct aagtttaaaa aagtctcaat aattcttttt tgcatttcat tagcagcttt
     2341 tttggtaaaa gtcaaagcta aaatttcatt aatcctagct ccttttaaaa taagtgctac
     2401 aaaacgcaca ctcagggcaa aggtttttcc gcttcctgca ctcgcttcta atgccaaaaa
     2461 aggctcaaat tgactcattt taattccttt ttataaatga gtttataagg acaatactca
     2521 tcttgttcat tttcaaactc tatttcttcc ttactcataa gaactaaatc tttaagtctt
     2581 tctcttagct catctaaact tttggctttt tgatgcaata tttgcatact atttaaatca
     2641 taaaaaccca cgcttgcatt ttcatcatat aaagcttggt aaaaagcaag ttgataagaa
     2701 ttacttggca cttttccact tttataatca ataatcaaat taccttcttt tgaactatcg
     2761 atacgatcta tagtaccctt aagttttata ctatctgttc cgagctttaa aatattgttt
     2821 aactcaagct ctgtatgtgc gacataaaag ccttttgaaa aatgctcttt ttcattttta
     2881 gcaaattgta taaattttaa tttaaatact tcaagatcaa gttcactgat attgtatttt
     2941 tgatattctt tattcaataa atttgcaaaa acttttatat caaaatcatt atttgaataa
     3001 tttttataat aaatttcaag cattttatgg ataaaatttc cttgattttt cgctttgctt
     3061 tcctcgctta aaaccctagg ttctgctaaa tttaaaatat aacgataata ataagttctt
     3121 ttttgatttt ccaataaatt aaaacgacta caagaaagcg gaaactcgaa aggattatgc
     3181 tttaaaatag gagcttttat aggagttaga ttaggtttta tgccttcata gtctaatttt
     3241 aaagcattaa gataagcttt ttggtggata tgagtttcat aaaaaaagtc aaaatcaagt
     3301 tcatctaaaa aacgtgattt gcttttttct tcattttcca caaagcaaat acttacttct
     3361 aaagcatttt tcatcaagct ttcataataa aatctttgta aattttctct tctatcatag
     3421 ctaatcaatc ctgctttttt acgcacttca ttgtttaaaa aaagctcatt aacacttctt
     3481 ttaggaataa attcttcatt aaaatcaacc aaaatcactc catcaaaaca aagcccacga
     3541 ctttctaaaa gtcccattac cgtaacctta cctccaccta catcactaag ggaaagttgt
     3601 gaaatttgca tgaaaaaaag atggatcaac tctttaagag ttaaagactg atttttcaat
     3661 aaatctttaa taaaataaag ttcttttcgt atcaaataaa taagctcttg cttttcattt
     3721 tctaaaaaca aagcaagtaa tttttcaaaa tatttaaaat cacatttctc atcaaaatac
     3781 tttttaaact ctataaaatc aagttttaaa gaatgtaaaa gcgtattgtg ataatcaaaa
     3841 atcatctgcg tgtcttcaaa ataatcctct tgatttttat agacaaaaga agcactacta
     3901 gcactttcat aaagtgcttg aaatttttga taaaacaaac tctctttaat actaattcca
     3961 cttgcaaagt taagcatatt gtctttatca aaaagtctta aaaactcaca aaaactttca
     4021 tctggagtta taactgcaat attttcaggc tttaaacctt tgcgtacaaa atgtgaaatt
     4081 tcatccataa caaaagcaca ttgcaaagcc cttaattcaa aagatttgag tttcattttt
     4141 gaattttttg ttttaaaaat ttcttctttt aagatctctt gttttgaaag attgatttca
     4201 taatgagtgt ttatttttaa atcaaatatt t
//
LOCUS       DARGEX010000113         4187 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.114, whole genome shotgun sequence.
ACCESSION   DARGEX010000113 DARGEX010000000
VERSION     DARGEX010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.114"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..315)
                     /locus_tag="SF010_001585"
     CDS             complement(<1..315)
                     /locus_tag="SF010_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230478.1"
                     /translation="MGFRINTNVAALNAKANSDLNSRALDQSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQS"
     gene            complement(410..2260)
                     /locus_tag="SF010_001586"
     CDS             complement(410..2260)
                     /locus_tag="SF010_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230479.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLKFIQNKTCFRFSIDENLNIY
                     DKTHNVFMYENLEEELNFFYQGILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDVCEPKMELQLSILFDQKDMFEWLNLYEMFI
                     SCNFYKMYYQDVILKTDQTCMDNIFVVIRNFDPNDQLTTICYKQFLQNIPHLLQNIPF
                     QRLLSERKAKFDTAVVVSAGPSLHKQLALLRQYQENVVIFCADGALNMLENEGIVADY
                     VLNLDIEDLAVKFFNCSKSLDYSKTIAVLAVNTHPNVIDCLINKFLYCIALRDEYLYK
                     QFHLDDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDKDGNSHSKGFAFGENS
                     NAEKNFQLLQVPSYYKDGNKVTTHVSWNDYRIKLEYLIARNSEINFYNATEGGAYINF
                     AKNTSFKECCEKFFTQKKPCFDIPKTFTYNRSLKFLSKVFLHLKNDLQNAQDILRDAH
                     LLNNVLIGVVNIKNPLPLDFLQNIYKSIGDFNSVLDDDKFIQDGILKGVLYYRGSFLS
                     EAIKKDLKDEAYYLLNFISAYQKWLEKFIERLEIKNAIIKDTVLKYGNLI"
     gene            complement(2270..3520)
                     /locus_tag="SF010_001587"
     CDS             complement(2270..3520)
                     /locus_tag="SF010_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8230480.1"
                     /translation="MIVSKTYEIDSCDDVELDIKRESKLEFKLCFDDEKEIKALVFII
                     PGLGGDVDENYREHLAEFVAGEFNVAVASVNYHCIGNRPQTGSTFYLDDIDKLILKVS
                     CEAADIKLPYDVDKIQDYKQMSEIFHFVNNQIVEGKQKGNFTPNYFLNLHVSLQPAKN
                     EYQNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLI
                     DGVIDNSSYAKFLWRLIGFGKEMDFVQYSEFSTFDFFHHIKTHCSTKTFWTSNSSSNN
                     FFSIPRRMIRYILEPKHLEIQTNYPKPCYTSYHSFYDKEIAPPDEKLELYKYLEQFGF
                     DAELYMIKNPDQVDGRFIKSLEHGMGMSIKTLISKELPLMLEKIKQNPKKDCKEKYIS
                     YPCEDLLYKFSEKDDKISLKIDKI"
     gene            complement(3520..4035)
                     /locus_tag="SF010_001588"
     CDS             complement(3520..4035)
                     /locus_tag="SF010_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8230481.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLLF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(4036..>4187)
                     /locus_tag="SF010_001589"
     CDS             complement(4036..>4187)
                     /locus_tag="SF010_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8230482.1"
                     /translation="TNLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNK
                     NFSRI"
BASE COUNT         1430 a          716 c          517 g         1524 t
ORIGIN      
        1 gctttgacca tcttgagcag cttgagtcgc tttagtcttg atggtatcta agattttaag
       61 ttgctcatcc atagccttat ctgcagtttg caagatacct aaagcatcat taccattaga
      121 tatagcctga cccaaagtat ttgcctgaga tcttaaacta tctgctatcg ccatccctga
      181 agcatcatct gctgcggagt tgattctaag acctgaactg agtcttgaaa gtgattgatc
      241 taatgctctg ctgtttagat ccgaatttgc tttagcattt aatgctgcaa catttgtgtt
      301 aatacgaaat cccattttaa atccttttaa ataaattcaa gtccatccat gaacttgtta
      361 taaactatat cgtttaaaag gaaaaatagt ttagagtttt tataaaattt tatatcaaat
      421 ttccatattt taacactgta tcttttatga tggcattttt tatttctagc ctctcaataa
      481 acttttcaag ccatttttga taagcgctaa taaaatttaa aagataatac gcctcatctt
      541 tcaaatcttt ttttatagct tcagataaaa aactcccacg ataatacaat acccctttta
      601 aaataccatc ctgtataaac ttatcatcat ctaaaacaga attaaaatca ccgatacttt
      661 tgtaaatatt ttgcaaaaaa tctaaaggca gaggattttt tatatttact acgccaatta
      721 agacattatt tagcaaatga gcatctcgca aaatatcttg agcgttttga aggtcatttt
      781 ttaaatgcaa aaaaacttta gataaaaatt taagtgaacg attataagta aaagtttttg
      841 gaatatcaaa gcaaggtttt ttctgagtaa aaaatttttc acaacattcc ttgaaacttg
      901 tattctttgc aaaattaata taagcacccc cctctgtagc attgtaaaaa tttatctcgc
      961 tatttcttgc aataagatat tccagcttta tgcgataatc attccagcta acatgagtgg
     1021 taactttatt accatcctta taataagatg ggacttgaag aagttgaaaa tttttttcag
     1081 catttgaatt ttcaccaaat gcaaaacctt tagagtgaga atttccatct ttatcaaaag
     1141 ctaaatcttg tcctatcata atgatatttt taaatcctaa agccaaagct aaagtataag
     1201 aaaaatggct tacatgggta cctgtatcta tataaccaaa atcatccaaa tgaaactgct
     1261 tatataaata ctcatctctt agcgcgatac aataaagaaa tttatttatt aaacaatcta
     1321 tcacattagg gtgcgtattg accgctaaaa ccgctatggt tttagaataa tctaaggatt
     1381 ttgaacaatt aaaaaatttc actgccaaat cttctatatc caaattcaat acatagtctg
     1441 caacaatacc ctcattttca agcatattta aagcaccatc tgcacaaaaa ataactacat
     1501 tttcttgata ttgtcttaac aaagcaagtt gtttatgaag actaggacca gctgaaacta
     1561 caacggctgt atcaaatttg gccttacgct cgcttaaaag tctttgaaaa ggtatatttt
     1621 gtaataaatg gggtatattt tgcaaaaact gcttatagca aatagttgtt aattgatcat
     1681 tgggatcaaa atttctaata accacaaaaa tattatccat acatgtttga tcagttttca
     1741 atataacatc ttgataatac attttataaa aattacaact tataaacatt tcataaagat
     1801 ttaaccattc gaacatatct ttttgatcaa ataatatact aagctgaagc tccatttttg
     1861 gctcacaaac atccacaaga taaatttttc cactacaaag ctcttcactc aaatctatcg
     1921 tgcttaaagc taggataaaa agttctattt cactttcaaa tacaaaaaga tgtttatagt
     1981 gtttagctaa atttttaatc agtaaagcat tgcctatacc ataaatacat ataaaaggat
     2041 atctaggagt tttttctaaa ataccttgat agaaaaaatt taattcttct tctaagtttt
     2101 catacatgaa aacattatga gttttatcat agatattcaa attttcatct atactaaaac
     2161 gaaaacaagt tttattttgt atgaatttta aaagtttatt tcctaagggt tcatttaccc
     2221 cacttaataa agcttgtatg tttttttcta gtatggtcat tagatttcct taaattttat
     2281 ctatttttag tgatattttg tcatcttttt cgctaaattt atacaacaaa tcctcacaag
     2341 gataagagat gtatttttct ttacaatctt tttttggatt ttgttttatt ttttctagca
     2401 ttaaaggaag ttctttggaa attaaagttt ttatagacat tcccatgcca tgttctaaac
     2461 ttttgataaa tctaccatca acttgatctg gattttttat catataaagc tctgcatcaa
     2521 acccaaattg ttctaaatat ttgtaaagtt ctaatttttc atcaggtgga gctatttctt
     2581 tatcataaaa agaatgataa cttgtatagc atggttttgg ataatttgtt tgaatttcaa
     2641 gatgctttgg ttctaagata tatcttatca ttctccttgg tattgaaaaa aaattatttg
     2701 aacttgaatt acttgtccaa aaagtttttg tcgagcaatg tgttttaata tgatgaaaaa
     2761 aatcaaaagt agaaaattcg ctatattgca caaaatccat ttcctttcca aaacctataa
     2821 gacgccaaag aaatttagca taacttgagt tatctataac tccatctatt agccaaggtg
     2881 caatcttagc cgccaaatgc gctaaatatc ccccgtgaga actacctatc atgataactg
     2941 gtataccccc ccccatagta tcaaaaggag catgtttttt aagataaagt gcaacattta
     3001 aaagatcttg agcttgcatg attccaaaat tttgatattc gttttttgca ggttgcaaac
     3061 tcacatgtaa atttagaaaa taatttggtg taaaattacc tttttgctta ccttcaacta
     3121 tttgattatt tacaaaatga aaaatttcac tcatttgttt ataatcttga attttatcaa
     3181 catcataagg aagcttgata tccgcagctt cacaacttac ttttaaaata agcttgtcta
     3241 tgtcatctaa ataaaaagtt gatccagttt gaggacgatt acctatacaa tgataattca
     3301 cacttgctac agccacatta aattcgcctg ctacaaattc agctaagtgt tcacggtaat
     3361 tttcatccac atctccacca agcccaggga tgataaacac taaagctttt atttcttttt
     3421 catcatcaaa acaaagctta aattcaagct ttgattctct ttttatatca agttctacat
     3481 catcacaaga gtcaatctca taagttttac tcactatcat tacattcccc ctattaaaag
     3541 ataagtttta ctcgctaggt ttttaaaatt ttcattctta cttaagatca cacaagcttt
     3601 attactagaa gagcttgtaa agtctatatt ttctaaatct tcatggcttt gattggctgc
     3661 gttaatgata gcatttttac ttgcttcatt gcttgaaatt cccatgagta taaaatcagc
     3721 tttatttata aaaagaagtt ttaagcattc tttatcatcg cctacgcgaa aatttacttc
     3781 ttttgtgcca ttaaaattgc caagatcgac attttcaacc ccacttacat tactcatcgt
     3841 ttttatagag cttaaatgat ccttttttaa agtataaatg cttatatcgt tgatcaaagt
     3901 tttaaggtta tttaaagact tactaacttc agcttcatcc ttacttgaac tcatttttgg
     3961 taaagcaata gcggctaaaa ttcctaaaat aacaatcaca aaaacaagtt ctaatatggt
     4021 aaaagctttt ttcatttata tccttgaaaa atttttattt ttagggctta aaatatcttc
     4081 ttctatgctt acaaattcct ttttttcata agcatcaacc gcagctcttg ctatcatcaa
     4141 agcattatca gagcagaatt ttaaaggagc tagttttaaa tttgtat
//
LOCUS       DARGEX010000114         4170 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.115, whole genome shotgun sequence.
ACCESSION   DARGEX010000114 DARGEX010000000
VERSION     DARGEX010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.115"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            65..445
                     /locus_tag="SF010_001590"
     CDS             65..445
                     /locus_tag="SF010_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230483.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            490..4002
                     /locus_tag="SF010_001591"
     CDS             490..4002
                     /locus_tag="SF010_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEG8230484.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4010..>4170)
                     /locus_tag="SF010_001592"
     CDS             complement(4010..>4170)
                     /locus_tag="SF010_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8230485.1"
                     /translation="IVAIIESAAPTMTLAGAMVMKAKLDSNLAVSAVAFGVLFAFVSM
                     PILIWTLL"
BASE COUNT         1434 a          522 c          697 g         1517 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagtagg gttttaatga ttgttgataa
      361 attagagaat tttaaaaaat tttataaatt aaaaatcgat ggaattattt taaaagataa
      421 tatagataat tttcctaaaa actgataaat tcttttgtaa aataagcgct aattgacgag
      481 gtttaaataa tgcaaaaaaa atcttttttg aaaatttacg gattaattcc ttttttactt
      541 atagcattca tcaatgcttt tgtggatttg ggacataaaa ttattattca aaatactatt
      601 tataaggcct atgaaggaag tgagcagtta tttttaaatg ctatagttaa tgctttgatt
      661 ttacttcctt ttattcttat gctttctcct tcgggttttt tagcggataa atatccaaaa
      721 aatattgtaa tgaaaatttc agcaattttc aatgttatac tcactttaat aatttgcatt
      781 tgttactata gcggtgcttt ttggatggct tttattttta cttttataat gggagcacaa
      841 gcagcgattt attcaccaag taaatacggt tttattaaag aactcgtggg aaaagacttt
      901 cttgctatgg gtaatggtgt aattaatgcg gtaagcattg tggcaatctt agcgggaatg
      961 gctttatttt ctttaagctt tgaaagtctt tatagttcta tgtataatca aacagatgaa
     1021 attttaaaag aagtagcgcc tttaggaatt gtgctaattt tattttcttg tatcgaagta
     1081 ttttttgcgt ggcgtttacc taagctcaaa caaacaaata aagatttagt ttttaataaa
     1141 aaagactata ttcgtggaaa acttctaata aataatctta agcttgtttt taaaaataaa
     1201 actatttggc tttgtataat tggaatttca tttttttggg ctatatctca actttatctt
     1261 gtcagctttc ctgtctttgc taaaaatgaa cttttcatag aaaatacttt ttatgtgcaa
     1321 atttcactcg ctttttctgg tataggagtg attttaggct ctttagtagc tggtaaattt
     1381 tcaaaaaatt atatagaact tggatttatt ccacttggtg cattgggtat gtttttaatg
     1441 gcttttttaa tgccttattt tataagttta ttaagttata gttttttatt tttctttttt
     1501 ggattttgcg gagccctttt tatcattcct ttaaatactt taatccaatt tcatgctaaa
     1561 gaaaatgaat taggacaaat tcttgcagga aataattttt ttcaaaatat tgccatgttg
     1621 ggatttttgc tcttggcaac tttatttgta aaatttgaaa tcaatgtgat ttatttgttt
     1681 tattttattg ctttggtaac ctttatagga agtttttaca tacttttaaa actccccttt
     1741 tctttagtgc gtatactttt aagcatagct tttttacaac gataccgttt acttgtggaa
     1801 ggttttgaaa atataccaga aaaaggtgga gctttacttt tgggtaatca tatttctttt
     1861 attgattggg ctgttgtaca aatggcaatt ccaagaaaaa tttattttgt tatggaaaga
     1921 agtatttatt ctaaatggta tattaaaatt tttcttgata aatttggtat tattcctgta
     1981 tcaagtacag gaagtaagac gagtttagaa ctgatagcaa agcatattaa agaaggtaat
     2041 ttagtttgct tatttcctga aggtacactt tcgcgacatg ggcaattaaa tgaatttaaa
     2101 gcaggatttg aattagcttg tgaatgttta agtgaagatg atggaaaaat tattcctttt
     2161 tatataagag ggctttgggg tagcgctttt tcaagaagtg atgaagaatt ttcagcaaga
     2221 aaccgcactt taaataaaag aaaaattgct atagcttttg gtaaagctat gcctttgcat
     2281 tctaaaaaag atgaagttaa agctaaagtt tttgaacttt cttttatggc ttggaaatca
     2341 caatgcgaag ctatgcatac tatagcaaga gcttggatag atacagctaa aaaaaatcta
     2401 aatcaaatag ctattatcga tacactagct ggagatattt cttatagaaa aatgttgact
     2461 cttagtttat ttcttaattt ttttattaaa agaaaatcca aagagttaaa cattaacctt
     2521 cagcgtggaa gttacgctcc taaagaggaa gctataggaa ttttactacc tgcttctttt
     2581 gcaagttctt taaccaatct atctgtttta atcgcagaaa aaattgcagt aaatcttaat
     2641 ttcactgctg gagaaaaagc tctaaaagca gctataaaaa atgcgcaaat ttcacaaatt
     2701 tatacttcta aaactttttt agaaaaatta gcaaataaag gtataaacct aaatttcgat
     2761 acaaatatac atttaattta ttttgaagat attgtagaag attttaaaat gcaaaaaact
     2821 aaaattttta gcatgatgct agcagttagt attataccta gttttatact caaaagcatc
     2881 ttcactcctt caaaaaacaa tcttgccatc gcagctattt tatttagtag tggaagtgaa
     2941 ggttctccaa aaggtgttat gctcaataac cgtaatattt taagcaatat agcacaaatt
     3001 tctgatgtgc tttgcacaag aaataatgat gtcattctct catctttacc accttttcat
     3061 gcttttggac ttaccgtaac tacatttttg cctttgcttg aaggtattaa aagcatcact
     3121 ttttcagatc caaccgatgc cttaggggtt gccaaagctg ttgctaaaaa taatgtcact
     3181 attatgtgtg gaacttcaac ctttttagga atttatgcaa gaaataaaaa gcttgatgct
     3241 ttaatgtttg aaagtttaag aatagttgta tcgggcgctg aaaaactaaa aaatgaagta
     3301 agaactactt ttgaaatgaa gtttaaaaaa agcatttttg aaggttacgg ggctacggaa
     3361 accacgcctg tggcgagtgt aaatttacca aatcattttg atgtggatta ttggcttata
     3421 catcgtgcca ataaagaagg aagcgtagga atgcctctac ctggaactgc ggtacgtatt
     3481 gttgatccaa ataattatga aaatttaaaa acaaatgaag atggactcat acttataggc
     3541 ggtcatcaag ttatggtagg ctatcttaat gacaaagaaa aaaccgatga agtggttaaa
     3601 gaaattgatg gcataagatg gtacaacacg ggagataagg gacatttgga tgaagatggt
     3661 tttttatata ttgtcgatcg ttattctcgc tttgcaaaaa ttggcggaga gatgatttct
     3721 ttgggtgcaa tagaagaaga aattgccaaa tttatagaca ctgaagtggt taaattttgt
     3781 gccacatctt tagaagatga gaaaaaaggg gaacaaattg ttttactcat agaatgcaat
     3841 aatgaaattt ttgaaggagt atgtgaggct ataaaaaatt ctaatatacc tacacttttt
     3901 aaacctagat attattttca aatagaaaaa attcccctcc taggttcagg aaaagttgat
     3961 cttaaaaaag ttaaagaatt agctaaaaat ttagccatat aatttgagct tataacaaag
     4021 tccaaattaa aattggcata gaaacaaaag caaaaagaac tccaaaggct acagcactta
     4081 cggctaaatt actatctagt ttagctttca ttaccatagc tcctgctaaa gtcatagtag
     4141 gagctgcact ttctataata gcaacgatgg
//
LOCUS       DARGEX010000115         4163 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.116, whole genome shotgun sequence.
ACCESSION   DARGEX010000115 DARGEX010000000
VERSION     DARGEX010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4163
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.116"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            102..830
                     /locus_tag="SF010_001593"
     CDS             102..830
                     /locus_tag="SF010_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8230486.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            852..1631
                     /gene="peb1A"
                     /locus_tag="SF010_001594"
     CDS             852..1631
                     /gene="peb1A"
                     /locus_tag="SF010_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG8230487.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1633..2385
                     /locus_tag="SF010_001595"
     CDS             1633..2385
                     /locus_tag="SF010_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8230488.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2396..3055
                     /locus_tag="SF010_001596"
     CDS             2396..3055
                     /locus_tag="SF010_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8230489.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3163..4092
                     /locus_tag="SF010_001597"
     CDS             3163..4092
                     /locus_tag="SF010_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG8230490.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
BASE COUNT         1411 a          509 c          779 g         1464 t
ORIGIN      
        1 tttattagta aaaataagtt acattttgaa gtagttttct ttatttaatg ataaaataat
       61 ttcaattaat tttatattta gttaaaaata aaggaaaaaa cttgattgaa ttaaaaaatg
      121 taaacaaata ctacggaact catcatgttc taaagaatat taatctttct gttaaagaag
      181 gtgagaagct tgttattata ggtccaagtg gaagtggaaa aagtacaact atccgttgca
      241 tgaatgggct tgaagaagtt agttcaggag aggtcgtagt taacaatctt gttttaaatc
      301 ataaaaataa aattgaaatt tgccgaaaat attgtgcaat ggtttttcag cattttaatt
      361 tatatccaca tatgacggtt ttgcaaaatt tgaccttagc tccaatgaaa cttcaaaaaa
      421 aatctaaaaa agaagctgaa gaaacagctt ttaagtattt aaaagttgta ggtttgctgg
      481 ataaagcaaa tgtttatcca gcaacccttt caggtggaca acaacaacgc gttgctatag
      541 caagatcact ttgtactaaa aaaccctata ttttatttga tgaacctact tcagcccttg
      601 atccagaaac catacaagag gttttagatg taatgaaaga aatttcacat caaagcaata
      661 ctaccatggt ggttgttaca cacgaaatgg gttttgcaaa agaagtagca gataggatta
      721 tttttatgga agatggtgct attgtggaag aaaatattcc tagtgaattt ttctcaaatc
      781 caaaaactga aagagcgcga ctctttttag ggaaaattct taaaaattaa ccaaaattga
      841 aaggagaaaa aatggttttt agaaaatctt tgttaaagtt ggcagttttt gctctaggtg
      901 cttgtgttgc atttagcaat gctaatgcag cagaaggtaa gcttgagtct attaaatcta
      961 aaggacaatt aatagttggt gttaaaaatg atgttccgca ttatgcttta cttgatcaag
     1021 caacaggtga aattaaaggt ttcgaagtag atgttgccaa attgctagct aaaagtatat
     1081 tgggtgatga taaaaaaata aaactagttg cagttaatgc taaaacaaga ggccctttgc
     1141 ttgataatgg tagtgtagat gcagtgatag caacttttac tattactcca gagagaaaaa
     1201 gaatttataa tttctcagaa ccttattatc aagatgctat agggcttttg gttttaaaag
     1261 aaaaaaaata taaatcttta gctgatatga aaggtgcaaa tattggagtg gctcaagctg
     1321 caactacaaa aaaagctata ggtgaagctg ctaaaaaaat tggcattgat gttaaattta
     1381 gtgaatttcc tgattatcca agtataaaag ctgctttaga tgctaaaaga gttgatgcgt
     1441 tttctgtaga caaatcaata ttgttaggtt atgtggatga taaaagtgaa attttgccag
     1501 atagttttga accacaaagt tatggtattg taaccaaaaa agatgatcca gcttttgcaa
     1561 aatatgttga tgattttgta aaagaacata aaaatgaaat tgatgcttta gcgaaaaaat
     1621 ggggtttata atatgaatga aagtgtaggt tttgttgaac atttaagaca aattcttact
     1681 tcttggggtt tatatgatga aaatagtata agcccttttg cggtatggaa atttttagat
     1741 gctttggata ataaagatgc ttttattaat ggttttattt atactttaga agtaagcatt
     1801 cttgctttgc ttatagctac aatttttgga actataggcg gagttatggc tacaagtaga
     1861 tttaaaatta tcagagccta cactagaatt tacgtagagc tttttcaaaa tgttcctttg
     1921 gtaatacaaa ttttcttttt gttttatgcc ttacctgttt taggtataag gcttgatata
     1981 tttactattg gtgtattggg tgttggggcg tatcacggag cttatgtaag cgaggtggtt
     2041 agaagtggaa ttttggctgt gccaagaggt cagtttgaag cttctgcgtc tcaagggttt
     2101 acttatattc aacaaatgcg ttatattata gtacctcaaa ccattagaat tattttaccg
     2161 ccgatgacaa atcaaatggt aaatttaatt aaaaatacct ctgtattgct tattgtaggt
     2221 ggagctgagt taatgcattc tgctgatagt tatgcagctg attatggaaa ttatgcgccg
     2281 gcttatatat ttgcagcggt tttatatttt ataatttgct atcctttggc ttattttgca
     2341 aaagcttatg aaaataaatt aaaaaaagca catttaacga gataaagggt tgttaatgga
     2401 aaatgttttt aatgcacaaa atattgaatt tttaatgcaa ggtttatttc tgacattaaa
     2461 aatagcctta gcaacttgta ttatttcgat tgtttttgga acttttttag ctataactaa
     2521 aaattatggg gatagattaa gtaaattttt agcagcttgc tatatagata tttttagaaa
     2581 tactccttta ttattatgga tgcttgcagc ttgttttgtt ctacctgtat tttttggaca
     2641 atttcctcaa gctttttggg gtactatagg attttcactt tatacgagtt cggttatggc
     2701 tgaaattatt agaggtggat taaattctat accaaaaggt cagtttgaag cagcttattc
     2761 tcaaggtttt ggtaaatttt ttactctttt ttatattatt ttaccacaaa cttttagaaa
     2821 aataatacct gctttattat ctcaaattgt aaccactgta aaggatacag cttatttagc
     2881 gggtttaggt atagctgaac ttacttataa ttcaaaaact atattggcaa aactaacaag
     2941 ttttgaagaa attttagcga tgataggtgt tgttgcggga atttatttta taatatgttt
     3001 ttcactttct atgttggtaa gatattatgc caaaaagaca gcttacattt cttaaaaaag
     3061 cttatatttt tatataagct ttttaaattt acagcagttt ttaacatttt ttttattaaa
     3121 atcttttgta ttaattcata attttattga ttaaggtttt ttatgcgagg ttataaaatt
     3181 ttttcaggct cagctaatgt cgaatttgca agacaagttt ctaaatatct ctccctgcct
     3241 ttaagtgatg ctggagtaaa gcggtttagt gatggagaga ttagtgttca aattgatgag
     3301 agtgtacgcg gaaaggatgt ttttattatt caaagtactt gcgctcctac aaacgataat
     3361 ttaatggaac ttttaattct tacagatgct ttgcgtcgct caagtgcaaa ttcaattacg
     3421 gctattatcc catattttgg ctatgcgaga caagatagaa aagcaaatcc tagagtgcca
     3481 attactgcta aacttgtggc taatttgatt caagcagctg ggattgatcg cgtagctacg
     3541 atagatttgc atgcaggaca aattcagggt ttttttgata ttccagtaga taatctttat
     3601 ggaagtatag tttttaatga ttacattaaa gccaaacatt ttaaaaatgc tattatagga
     3661 agtccagata tagggggtgt tgcaagagct aggagtgttg caaagcattt aggacttgat
     3721 atagttatag ttgataagcg tcgtgaaaaa gccaatgaaa gtgaagtaat gaatattatt
     3781 ggagatgtaa aagataaaga agttatctta gtggatgata ttattgatac tgctggcact
     3841 atagttaaag ccgcggaagc tttaaaagaa aaaggtgcaa aatctgttat ggcttgctgt
     3901 actcatgcag ttttaagtgg aaaagcctat gagagaatag caagtggagt tttagatgag
     3961 cttgtggtaa cagatactat acctttaaaa gagcaattac caaatattaa agtattaagc
     4021 gttacacctg tttttgctga agtaatacgt cgtgtttatc ataacgaaag tgtaaattct
     4081 ctctttattt agattaaaaa agcttaaaga ttatttttaa gcttttcatt tttatgctac
     4141 ttaaagaaac aaaaaacata tat
//
LOCUS       DARGEX010000116         4061 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.117, whole genome shotgun sequence.
ACCESSION   DARGEX010000116 DARGEX010000000
VERSION     DARGEX010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.117"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            79..795
                     /locus_tag="SF010_001598"
     CDS             79..795
                     /locus_tag="SF010_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8230491.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKTHTISNLKTLNLDFESFYKNNN
                     AKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKGF
                     YKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSFV
                     ENDIIETIESKIKLLIINNL"
     gene            851..1072
                     /locus_tag="SF010_001599"
     CDS             851..1072
                     /locus_tag="SF010_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230492.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(1097..2104)
                     /gene="pyrC"
                     /locus_tag="SF010_001600"
     CDS             complement(1097..2104)
                     /gene="pyrC"
                     /locus_tag="SF010_001600"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG8230493.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRIIKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFRQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2113..2340)
                     /locus_tag="SF010_001601"
     CDS             complement(2113..2340)
                     /locus_tag="SF010_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8230494.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            complement(2337..2693)
                     /locus_tag="SF010_001602"
     CDS             complement(2337..2693)
                     /locus_tag="SF010_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG8230495.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            complement(2690..>4061)
                     /locus_tag="SF010_001603"
     CDS             complement(2690..>4061)
                     /locus_tag="SF010_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HEG8230496.1"
                     /translation="LFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTD
                     IKEVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAV
                     LIPLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNH
                     TKKLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMF
                     SISKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDEN
                     LLAPFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEAL
                     INTYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAP
                     SYQTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNP
                     KLKANP"
BASE COUNT         1509 a          628 c          502 g         1422 t
ORIGIN      
        1 aatcattcaa gccctttctt tgggcttgaa ttttaaaaat ttatgctatg attttgtata
       61 ttttataaag gaaaatatat gaatttatgg gataaaaagg ccaaaactta cgcaagatat
      121 caaaacactt taaacaccat acaaaagcaa acttttgaat atttacaaaa tttaaagatt
      181 tcctttcaag ataaaagtat tatagatata ggatgtggaa ctggggtttg gactttacac
      241 ttagctaaag aagctaaaga aattttagcc ctagatagtg caaatactat gcttgaaatt
      301 ttacaagaag atgcaaaaac tcataccata tcaaatttaa aaaccctgaa tttagacttt
      361 gaaagctttt ataaaaataa taacgcaaaa tttgacttag cctttttaag tatgtctcct
      421 gctttacaaa atgaaaaaga ttatacaaat ttcttaaatc tagccaaaat aaaaatttat
      481 cttggttggg ctgattatag aaaaagtgat tttttagatc cgatttttaa atattttaat
      541 actgaattta aaggttttta taaaaaagat ttagaaaatt atttactaga aaaaaatata
      601 ttttttcata agattgtttt tgatgaaaca cgcaaagtcc aaagaacaaa agaagaggct
      661 atagaaaatg ctctatggca tttaagcatg aacaaaatca caacttctaa agaagctgta
      721 agttcttttg ttgaaaatga tattattgaa actatagaat ctaaaataaa acttttaatt
      781 ataaataact tataaaaata ttaagctgat atttattaca atttcactca ttatttcaaa
      841 ggagttttta atggttaaaa atttaatcat caaatttgga cgcttgattc ttgatgcaat
      901 tgcagcgata agttttgttg tagctttgct ttattctctt tttatgatgt ttagcattgg
      961 atttttagct ggtttattat cgctgatagt cagttttatt gctttatttt taagtttttt
     1021 tgtaatctat cttgttatag atatcagaga tgctcttgta aataaagctt aaattttcca
     1081 cctttaaggt gggaaatcaa tgttttaatt gaaattttaa aatttctcca gccatataag
     1141 gcacgacttg attgtattta tcttcataaa catttggcac ttgccattct ttttcttcta
     1201 aagttaaaat tttatcttct ttaaatttta aatcataaat tttacaagca ttatcgctta
     1261 aaaatttttg caaattttct tcagaactat tttgcctaaa taattcagcc aacacaggta
     1321 aaatcactgg ggcgctaaat acacctgcgg cacaaccaca acactcttta gtatctcttg
     1381 ggtgaggcgc actatcactt ccaaacataa ctttttcata accactaaaa gcaagttcgc
     1441 aaagggcttc tttatcttcg taacgcttgg ctataggctt acaaaaaaga tgaggattca
     1501 ttttacctcc gataacatca tctaaagtga tgattaaatg atgtaaagtg attgtcgcgt
     1561 ataaattttc ataatctttt aaaagttcac ataaagtttt agtggtaata tgctccataa
     1621 caatcttaag tcgtggaaaa tgtttggcta atttttcata aattttagca aaattacttt
     1681 ccctgtccat tacaaaatca ttggtttctc catgcactag caaaggaata tttaaatcac
     1741 tcatagcctc taaagtaggt tttaaatact ctatatcaaa acttgaaact ccgccatttg
     1801 aatttgttgt aattcctgct ggataaagct taatgccaaa aatttcatct ttagcactgt
     1861 aaagaaattt ctcatcataa ttttcaaaaa aaagtgtcat taaaggagtg aaattttcat
     1921 ctttacaagc cttaatgata cgcattttat aagcttttag atcttctaaa ttgcaaagtg
     1981 gagggattaa atttggcata atcacagctg cacaaaaatc tcttgcactc aaaggtgcaa
     2041 taagttctaa catttgatta tctcttaaat gcaaatgcat atctaaagga tttttaagtt
     2101 tcattttatc tcctatattt ttagctgata aaatccattt ttaagacgct taaaaagctt
     2161 tttttcttct aaaaatttaa aagtagcgat gatagtgggc ttgctttggt ttaatttttc
     2221 ttcaagctca ctgattttaa tcataataaa accattttca tcggcatttt cgcataaaaa
     2281 ttttaacaat tcaaaacgct tttttcccaa aatttcttgt attaattttt caaatttcat
     2341 aagtaaatgc tatataaaat aaaactccaa acaaaaagag ctaaaagcac actaaaaaac
     2401 actgccgtac tcgcacaatc tttagcaatt tttgcctttt catgccattc atttgtaatc
     2461 aaatcaacac aagcttcaat agccgaattt aaagcctcta taattaaaat aagcattaaa
     2521 acacttacca ataataaatg ctccaaaaaa ctaactttta agaaaaaact aaaaactatc
     2581 gcagggataa taatacaaag ttcaattcta aacgccattt catttttaaa taaagcaaaa
     2641 atcccttcta aagcatatct tgcattattt aaaaaatgat atttaggctt catggatttg
     2701 ccttaagttt aggatttaat aaatcatatt ctggctcata aacacttgtt tttacatcaa
     2761 aatatcctaa aagagtacta aaaagattat cttgagaaag ttttaaacct ttatgctctt
     2821 tagctaaatt cattaatttt tcatcattgc tccaaaaaat agcaggaata cgggtttgat
     2881 aacttggcgc tatagcataa ggcataccat gaagataaat atcattttca cccaaacttt
     2941 caccatgatc tgaaagataa aacaaagaac tttcatagct tttttgctct tttaatagtt
     3001 ttataatctc acttaaaaga taatctgtat aaagtaaagt attgtcataa gtattgatca
     3061 aagcctcgct atcacatttt gaaagctcat tagtatcaca agttggagtg aattttttaa
     3121 attcacttgg atagcgttta taataagttg gcccatgaga accttgcaaa tgaagaacta
     3181 ttatattttg atcacttaaa tgatttaatt tttctttaaa aggagcgagt aaattttcat
     3241 ccaaatcact agaaagcttt tgcttataag ctaatctatc acaaacccct ttacaaccac
     3301 cagaattatt atcaaaccat gcagtatcta cacctgtttt ataaagcaca tccatcgcat
     3361 tttcttgaaa ttctgaactt gaataatttt cacgcttaga aatagaaaac atacaaggta
     3421 aacttaccgc tgttgctgtt ccacatgatg aaaaattatc aaaaaacact acattatctt
     3481 ttttggtata aaaattggta tcatttttag catatccacc caaagagtaa tttgccgctc
     3541 tagcggtttc acccactacc aaaactaaaa gttttttagt gtgattgttt tctctataag
     3601 catcattagc tatagtttta aattctggct tagcttttac aaaacgaaca taatagcgat
     3661 atacggcata aatttgataa aaaggggtat tatacattct tatttcatta tagtttctaa
     3721 aaaaaggcaa gaaagtttta cttaaaggga ttaaaaccgc acaaacaaca atcaaacctg
     3781 atattatatt gataatttta atttttagat gggatttaaa actaccataa taatcaattt
     3841 ttactttaac aacataaaaa accaacaata aagccaaaac aacaaataag attaatttta
     3901 aatttaacaa atcttttact tctttgatat ctgtttgaac aacattttgt atcatatcag
     3961 aatctataag caccccataa aaactaataa agtaaacact taaaaaagat gatattataa
     4021 ataatataga aaaaaattta gtaaaaaact ttataaaaag c
//
LOCUS       DARGEX010000117         4036 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.118, whole genome shotgun sequence.
ACCESSION   DARGEX010000117 DARGEX010000000
VERSION     DARGEX010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.118"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..356
                     /locus_tag="SF010_001604"
     CDS             <1..356
                     /locus_tag="SF010_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8230497.1"
                     /translation="AELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVE
                     ILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDW
                     ENELLKTADAFSHNL"
     gene            369..1223
                     /locus_tag="SF010_001605"
     CDS             369..1223
                     /locus_tag="SF010_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG8230498.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIILMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            1216..2019
                     /locus_tag="SF010_001606"
     CDS             1216..2019
                     /locus_tag="SF010_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG8230499.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLILLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAIACFGFLMHLIGKFLKR"
     gene            complement(2008..3345)
                     /locus_tag="SF010_001607"
     CDS             complement(2008..3345)
                     /locus_tag="SF010_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG8230500.1"
                     /translation="MKTSNTFSIIEHQAFSKEDLKEIFKEKAEGFYKELEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNSTQDIKVQNNGKYLI
                     SKNDENCFMLKPDLYIKNKMILDTKWKIPNDSEDEKKQGIAQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(3345..>4036)
                     /locus_tag="SF010_001608"
     CDS             complement(3345..>4036)
                     /locus_tag="SF010_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8230501.1"
                     /translation="NYLKLQGLEDYKEKDEKVNLPYIIIIDEINRGNVSKIFGELITL
                     IEASKRIGEKEELKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIE
                     MMPDVSKLSIDCEGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLESLKKVFKN
                     RIIPLLQEYFYNDYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKIVYKFSDSNN
                     WNKDTFIKIYK"
BASE COUNT         1342 a          599 c          546 g         1549 t
ORIGIN      
        1 tagcagaatt ggatagttta aatttacaaa ttgcctcaaa attagaaaaa ttaaaaaata
       61 gagaatttgt agtttatcat ccttcttgga catattttgc aaaacgctat aatcttacgc
      121 aaattcctgt agaaatttta ggtaaggaac caaaaagcaa agatttgcaa aaacttatca
      181 ctctaatgaa agataaaaat ttaaaagtca tttttgttca aaatggtttc cctgaaaatg
      241 cagcaaaaac acttgctaaa gaatgtgatg caaaaattta caaaatagat catttatctt
      301 atgattggga aaatgagctt ttaaaaactg ctgatgcctt ttctcataat ttataatcag
      361 gttttttgat gctttttttt gaaatttcta atctaaacta cgcttataat aatgaaatca
      421 tcttaaaaaa catcaatctt agctatgaca ataaagactt tctctctatc ataggtccaa
      481 atggcgcagg aaaatcaaca ctcgtaaaac ttatcttagg acttttaaaa tccaaaaatg
      541 aaatccattt caaagctctt caaaaaaaag aaataggcta tgttcctcaa cacactctag
      601 ccaatcctaa tttttgtcca agagtacttg aaatcattct tatgggactt gtaagtaaaa
      661 aaatttttgg tttttatggg aaaaaagata aagaaaaagc tatgcaagct ttaaaaagcg
      721 taggaatgga aaaattttgg aacaaaacca ttgattctct aagtggagga caaaggcaac
      781 gtgtttttat cgcgagagcc ttagctagtg aatgcaaaat gcttatttta gatgaaccta
      841 ccgcaagcgt tgataacaag tctgctatac aaatttttga acttctaagc tctttgcacc
      901 aaaaaggcat gggaatttta ctcatttgtc acgatatcaa ccttgtatta gcttatagcg
      961 ataaaattgc acatttaaac aaagaacttt tcttgcatac taacactaaa gaaaaagaaa
     1021 aaagttcatt tttaaaacat ttatacgaaa atcactctca tttttgtgat gtagaaatga
     1081 gtttaaatac ttgtttttgc gatgaaaaaa attgcgatag caaaaaacta tgcgaacaag
     1141 aatttacaag aagaaatttg aaaaaaacag aatttaaaaa agaaaatttt tgtttaaaat
     1201 tttcaaagga aaataatgct tgaaatttta aatttcacct tttttcaaaa cgctttacta
     1261 ggagcgattt tagtcagtat agcttgtggg atcataggca ctttggtgat gataaatcgc
     1321 cttttttcta tggctggagg tataacacat ggggcttttg gtggtatagg tatagctttt
     1381 tatttctctt tgcctatttt attaagcacg ggaatattta ctttattttt ggctttttta
     1441 gtagcttttt tagctaaaca ctatgaacac agaagtgata gtattatcgc tgtaatatgg
     1501 gcttttggaa tggctgttgg gattatttta atcgatttaa gccctagtta taacacagat
     1561 ttaatggctt atctttttgg gagcattttg gctgtaggaa cacaagattt atggcttatg
     1621 gctttggttg atagcgtggt ggtgctttta attttattat tttatagaca atttgaagca
     1681 ttaagctttg atgcggaatt tgcaaaagtt cgtggtatca atacaagttt ttttcattat
     1741 cttttaatcg cccttatggc tttttgcata gttatttcca tacgccttgt agggcttatt
     1801 ttagttatgg ctttacttag tatcccaagc tttattgctg aaaattttac caaaagactt
     1861 ggctttatca tgattttggc aagtttttta agtatgattt tttgtgtttt aggacttata
     1921 cttagttatt atcttaatct ctcaagcggt gcttgcatca tagctatagc ttgctttggt
     1981 tttttaatgc atttgatagg caaattttta aaaaggtaaa ggtgcaaaaa atacttggac
     2041 ttttatatct ttttgccctt gttctttaaa atacaaatgt tcgctcgcct taaaaacaaa
     2101 aaatttttct gcgatttttc tttgtaaatc ttgagttttt tcgcataaag gatacacaag
     2161 tttaatatca taaattttaa atttgcaagc ataagcaaac atttgataca aatcgctttg
     2221 tgctataccc tgttttttct catcttcact atcatttgga attttccatt tggtatctaa
     2281 gatcatttta ttttttatat ataaatcagg ctttaacatg aaacaatttt catcattttt
     2341 tgagattaaa tactttccat tgttttggac tttaatatct tgagttgaat ttactttttt
     2401 tagcatataa gctacataat cttcaaaaat tttctccata ggaaaaagca aagcaaaagc
     2461 ttcattttta ccatgataag gcataaaact ttcatttttt aagaaaattt tacaccacaa
     2521 aagcaagttt tcataataat caaaatgtct tgaaatttta tagctaaaat ctttttcata
     2581 atttttagaa aattctacct catcaagcat ttgcatggct tttataagtc taaatttatt
     2641 caaacttgtt tttgatttta aaaaatttag cgttgatttt atcaaacgat tgggtgctat
     2701 atctaaaaca aactcatcgt tgcttgtaaa aaatctttct ttgtgtatca aattttgctt
     2761 gatatgctcg ttaaatagta attttccctt taaaaaagcc ctattttctt cgcaacttag
     2821 ataagatctc atcaagcctt ttttatatac gctatcaaat tcatctaaaa acatagtgat
     2881 aaacacttca aataaaggaa ttttagaact ttgcaaagat gaaatttgcg attttttaaa
     2941 gggggagttt tttaaggttt ttagcatatt tatcaaaaga tttttaggat taaatttaaa
     3001 atctttttca taaaaatcat tatttttaga aatattgtct aattcataac atcttcttag
     3061 tttttctttg tcatgatttg aagaactatc ttctttttta taactatcta aattcgtgca
     3121 ttttggcaaa atctccaaaa ccccgctttt agtctgtata atgccgacat aatttttagc
     3181 ttttaaggaa tttttgtttt taaagcctag aagattttca ttattttttg caaagtcttc
     3241 tagctcttta taaaaccctt cggccttttc tttgaaaatt tcttttaaat cttctttaga
     3301 aaaagcttgg tgttcgatga tagaaaaagt attacttgtt ttcattattt atatattttt
     3361 ataaaagtat ctttattcca attattacta tcactaaatt tataaacaat cttatcgctt
     3421 tctataaatt ctgtcatatt ttttaaataa tctttatttt caacactaat ttccaacata
     3481 ccatttttat ttaaaaccgc atcaatcaaa gcatagtcat tgtaaaaata ctcttgcaaa
     3541 agtgggatga ttctattttt aaaaaccttt tttaaacttt ctaaattttc aacacttata
     3601 aaaaatgcgt gtcctatggt tttttctcta tctagtaaat attctatacg agtgtttata
     3661 gcttttaata attcttgtaa attaatacct tcacaatcta tagataattt gctcacatca
     3721 ggcatcatct caataaattc aaagcgtctt cgcaaagctg tatcaagaga agttatgctt
     3781 ctatcggctg tattcatagt gcctataata taaacatttt taggcactcc aaattctttg
     3841 ccactataag gcaaagtcac ttttaactct tctttttcac ctatcctttt gctagcttct
     3901 atcaaggtta taagctcacc aaaaatctta cttacattac cacgattgat ttcatcgatg
     3961 atgattatat aaggtaaatt tactttttca tctttttctt tgtaatcttc taaaccctgc
     4021 aattttaaat aattta
//
LOCUS       DARGEX010000118         3827 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.119, whole genome shotgun sequence.
ACCESSION   DARGEX010000118 DARGEX010000000
VERSION     DARGEX010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.119"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..427
                     /locus_tag="SF010_001609"
     CDS             <1..427
                     /locus_tag="SF010_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8230502.1"
                     /translation="EMIIEFAKYEDMLDFLQCTKEKLEHSLLKNKFARAFLLKENEKT
                     IGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVFKFLGEICKKENLKRLDWV
                     CLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            424..1032
                     /locus_tag="SF010_001610"
     CDS             424..1032
                     /locus_tag="SF010_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG8230503.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            1029..2219
                     /locus_tag="SF010_001611"
     CDS             1029..2219
                     /locus_tag="SF010_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230504.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSENLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(2211..2585)
                     /locus_tag="SF010_001612"
     CDS             complement(2211..2585)
                     /locus_tag="SF010_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8230505.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            3013..3827
                     /locus_tag="SF010_001613"
                     /pseudo
     CDS             3013..3827
                     /locus_tag="SF010_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1448 a          551 c          514 g         1314 t
ORIGIN      
        1 agaaatgatc atagaatttg caaaatacga agatatgtta gattttcttc aatgcacaaa
       61 agaaaaactg gaacattctt tactaaaaaa taaatttgct cgtgcttttt tgttaaaaga
      121 aaatgaaaaa actataggct atatgattta tttttatact ttttcgtctt tttggggcag
      181 cggtggaatt tatcttgaag atatttatat acgagaaaat tttcgtaaaa aaggttatgg
      241 aaaagctgtg tttaaatttt taggagaaat ttgcaaaaaa gaaaatttaa aaagactcga
      301 ctgggtttgc ttaaatgata atattttagg tattaatttt tatgaaagtt taaacgctaa
      361 acatcttaaa caatggagaa attatcgtct aagtggagaa aatttagaaa aattgtgtga
      421 tttatgataa gaagtcttta ttatttaaaa gctatgggat ttaactttgt tgatacacat
      481 acaaaccact ttgaacaagt acaaaatttt caagaattaa aacaacttgt ttcatcttgc
      541 accttatgcc aattttccaa aacaagaaaa tttagtctta tggaacctaa gataaaaaat
      601 gtcaaattgc taattcttga tgtttttggg caaaagagtg aaaatgaaag cggaatttta
      661 cttaattcaa aaaaaggtga aaaattaaaa cactatattt atcaaatttt agggctttgc
      721 gatgaagatt tttatttttc ttatttattt aaatgttttt gtaatggaaa atttgatgat
      781 ttttcgctac aatcttgctt accatttttc tggaacgaac taaaactgat tcaacctgct
      841 tttttgcttt gtctaggaga atacacattt aaaagcttgg gatttaaaga ttatcacatt
      901 ttaaaaggtg aagtttttgc ttataaaaat tttttcataa tgccaagtta tgatttagat
      961 tttatagaaa aaaatccaag ttatgaaaaa aatttcatac aagatttaaa aaaaattaaa
     1021 ggatttttat gaaaaaaata tttttaatat ttttcttatc ttgctttttg cttaatgcaa
     1081 aagagcaaaa attagtcgat gtaaaacccg ttgaaaattt ttatcctaaa ttaagcgttc
     1141 aagaatgcaa cacaaattgt ctttttgatc ttttagaatc aagattatat cttagttttt
     1201 taagtgaatt tgcagatcaa aacgatcaat ttttatctaa tgtttatgca aaattattaa
     1261 attccattac tgattttgaa aaaaatgttc aaaaaattac ttctgtcaaa cttgcgataa
     1321 ttatcccaga aaaaaccata aaaagctact caaatactat aataaattca agcatagcct
     1381 atcttttaag acaaagagct gaaatcaaag taaaagtttt tttaaccggc acagaagata
     1441 gtgataaaat tcgagccgcg cttgatgcag cacaagctca aggatatcag tatgccatag
     1501 ctggatttac cttaaaaggt gctaatgagt tgaaaaatta ctcaggaaat atgaaaattt
     1561 tcataccgac tatccataaa aacaacatac aaatttcaaa tcaaaatatt atttttggaa
     1621 gtattgacta tgatgctcaa attgccacac ttttaagcaa atcaaatgct aatatcgcaa
     1681 tatttagcga tggctctgcc ttatcaagca atctaaattc aagaattctt gctcaaaata
     1741 ataatgctag aatatatacc atagaaggcg agaagcttga tttcagcaga cttttaagat
     1801 cacaaggtgg agttaataat gcctcaatat tttttaacgc tccattgatc aaaacagctc
     1861 tagcaagttc tcaactaaga atttataaca ttcatcctta tgtgctttta tccactcaaa
     1921 tcaactataa tccaacattt ttaagtttaa cacaacaagg agatagagaa aattttatca
     1981 ttgctaattc tatcaataac cacgatgata acttagtcta tcttaatgaa atttttaatc
     2041 aaagtataga ttataactgg attgcttatg ctactagcat aggagttgat tacttttata
     2101 ccgaattcct aaataaaaaa agcgaaaatt tatttgatga gaaaatcaaa aattctcaag
     2161 ttgattacaa agtgcgtctt atgcaaggta agcaagcaag ctttgaagaa ttaaaataat
     2221 tcttcaaaga gcttttttaa ctgcatatcc attctagctg gtttttcgtt tttaataaaa
     2281 gctaaagtta attccatttt aaaaaacaaa atttcatctt tataaatttc ttgtaaaatt
     2341 tccacagaag catttttgac ttctaaaatt tttgttttaa tctctatcat atctccaagt
     2401 tttgcaggtt ttaagaaatt gcaatttgct tttgtaagta aaaaatgtcc cttagacgca
     2461 tcaaaaatat ctactttttt attgaaaaaa atttcacttc ttactctctc gcaaaatttt
     2521 aaataattac tatgatacac cactccaccc gcatcagtat cttcataata cacacgcatt
     2581 ttcatcgctt taccttaaaa aatatttcac atttaaaaaa cattagatta tacaacggaa
     2641 attctttgat atcgcttttt agtttatatt aaaaattccg tccaatctta atttaataaa
     2701 gctttttaac ttcactggga gggggtatag agaaattttg ttttaaactt tccattgtta
     2761 ccttcttaag catcaacgct tttgcagcca ctcaagcaaa tactacagac aatcgaaatt
     2821 tcaatattcc aaagcattat tttaatgata acgaacttta tgataaaacc aattctactt
     2881 ataaaaaatt ccaaggtata aattattatg ctaagagttc taaacaatat attaacaata
     2941 tttaacaatc ataaaccaaa tattacaaat ataaacgatt taaattttaa acattattta
     3001 cttactcctg atatgagaga agatgaagtt ctttctttta aagcaaggca tggtgttaat
     3061 acagccgatc gtagtataaa aaacagttag agtgtaatca cagcaaaaac cgatcatgct
     3121 gatgcaagtt ataacaaact tatattagaa caaggagaac ttagttcagt tttttatctt
     3181 aaacctaaag atactcatat aaaaacccta gtaattctaa aagcaatcaa cgcatgaatt
     3241 tcttaatgag ttctaccttt actcattata gtaatgcaag ctataaccaa accatacttc
     3301 aaaaagatgc ccatattagt atgggagttg agaacactta tgatttagcc ttaaatggtt
     3361 ctccttattt aatcggagct atagccactt atggagattc tacaaataat agtttaaata
     3421 taaaagcagg tagcagtgta gagtttttta cttccttgcc taaaaaagat aaaaatggta
     3481 ataatacctt tgatgaaaga atcactcacc ttgtaggtgg tttagcttat caaggtaatg
     3541 taaaaaacaa taaaatcttt atcaaagatg ctaatatgat tatccatggt ccaagtaaag
     3601 cttatgctag tttagctgct gctcatatta gcgcaggtta tatagatagc gaatcagata
     3661 aaaattttca agccagtaaa aaccttttag acatagatag ttttaatctt gatatgtata
     3721 tgaaccatga taaacaaccc ttagcttata attctgtttt atttgctgat tttttgggtg
     3781 gaaaaaccga acaaggacaa gccttagata atactatcaa tattaaa
//
LOCUS       DARGEX010000119         3747 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.120, whole genome shotgun sequence.
ACCESSION   DARGEX010000119 DARGEX010000000
VERSION     DARGEX010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.120"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..937)
                     /gene="selD"
                     /locus_tag="SF010_001614"
     CDS             complement(<1..937)
                     /gene="selD"
                     /locus_tag="SF010_001614"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(887..889),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG8230506.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLEC"
     gene            complement(947..1519)
                     /gene="yedF"
                     /locus_tag="SF010_001615"
     CDS             complement(947..1519)
                     /gene="yedF"
                     /locus_tag="SF010_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8230507.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1630..3732)
                     /gene="ccaA"
                     /locus_tag="SF010_001616"
     CDS             complement(1630..3732)
                     /gene="ccaA"
                     /locus_tag="SF010_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG8230508.1"
                     /translation="MFKSLNIGLKLIFSVATVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         1243 a          647 c          457 g         1400 t
ORIGIN      
        1 aacattctaa ggaatctttt tcacttatag aaattaaaag tcctcctgaa gtttgtggat
       61 cacaaagtaa taatttttct tcatttaaat caggggtaag ttcttttata aattctaaat
      121 ttttataagc tccagcagga attaaaccca tattaaaata ctcttttact ccatctaaaa
      181 aaggaagttc actttcaaaa atttcaaaag aaatattttt atttagcatt tcttttaaat
      241 gtcctaaaag tccaaaacct gtaacatcac tcatggcact tggatgaaat ttaagagcaa
      301 tttgactggc tttataattt aactccatca tgtttttaag cattatatct aaatgttttt
      361 gatttaacat ttgcgccttt aaagctgtac ttaaaattcc tgttcctaaa ggcttggtta
      421 aaatgataca atctccgatt ttagaagtat tattagcaat aaatttacta ggatgtactt
      481 ttcctgtaac actaagtcca aaaaaaagct cggtgctttc tatagtatgg ccacccacga
      541 ctaaagcatt acattcttta actttatcat ttgcaccttc taaaagctct tttaagatgt
      601 ttaaatcatg attgcaagta tcaaaaccta ctatatttaa ggcattaatt acctctgcac
      661 ccatagcaaa aacatcgctt aaagcatttg ctgcagcaat agcaccaaaa tgataagcac
      721 tatctactat aggagtgata aaatcaagcg tttgcaccaa agctaaatca ggactgattt
      781 gatatacgct tgcatcttca ttatttccga tatcactaag taaagcagga gttttttgca
      841 tgaaatttaa aattgtttta agaccacccg ggcttaattt cgctgctcag cctgctgctt
      901 taacaaaatg cgttaaattt tgatttttat attgcagtgt ttttccttat agagtaatga
      961 tttttgcttt accaaaaagc tcgtttaaaa tttcataagc attgcctata tttcctattt
     1021 taagttcttt gcttttatta aaaaattcta gacaagctcc acaacttatg atctcaatac
     1081 ctaaattttc aagttctttc atagctaaat gtgctttatg attttcatca acattgatta
     1141 aaacactttc atttacgcaa agaattttac ttggagcatg atctaaattt tttaaggtac
     1201 ttaaaaatcc tacaagtaaa ttttgtccca attcaccctc acccactttg tcggttttta
     1261 aaaataaaac attataatcg tgaatattta ctttactaga atcaaaattc tttttttgta
     1321 ctttgatgca aaactcttgt gcattttcat ctacaacagg gtttaaattt aaagagttaa
     1381 gaaattttac aacattattt tttgaaataa tagaatttaa aacaatttct aaaatttcat
     1441 tttcttgaag tttttcaaga gcgttttttg tttcaactat aggctgagga caagatagat
     1501 tgcgacaatc aattttcatt atttttcctt gatattagct ttgaaaaata atattatttt
     1561 attacttgtt ttgtgtttaa aaattttaaa taatatagaa aaaatttaaa agctcaaaaa
     1621 tgagcttttt taaaatcttt ttttattcac atcttcaaga attgccgcag caatttgatt
     1681 gacttcattt gttatattat tggtgacatt tgcaacttcg acattttcct tagttacagt
     1741 ttcaagttgt gctatagcat cgttaatctg tgtgattcct gctgtttgtt cttttacaga
     1801 ttctgctact tcatttacgc tttgaacaag tatattaata tttgcctcga tttcagataa
     1861 ggattttcct gttctttccg caagctgtct tacctcatct gcaacaactg caaaaccacg
     1921 cccatgttct ccagcacgtg cagcttcaat agctgcattt aaagcaagaa gattcgtttg
     1981 ctcagcgata tctttaatca cattgacaat attttttata tcatcagctt gtgaagcaac
     2041 ctcaactgtt tttccactta cattttgcat agaagaatta atctcctcca cagctgcagc
     2101 cgattgttct aaagaactcg cttgtgcatt agagccatca gcaagttttt gcatagaatt
     2161 ttttaactct tctgactgat tggctaaatc tttagcaaaa tttgaagaag ccaaaagcat
     2221 ctttttaatt tctttgccta aaatattagt tgtaatctca acttcacctt tagcattaaa
     2281 tacttctgta ctaaaatcaa gagccttata actatcaaaa actctattaa tttcattcat
     2341 attagaacca attttacttt gtaaaacatc aagcatccta ttaagaacat ttttaagttc
     2401 tactaattga ggatttatag gatttttagt aattcttgca gttaaattac ccttttcgat
     2461 ttctctagca gtttgcaccg attcatctac agcattttga tcttgttcta aagatatttg
     2521 aatcttttca atattttcat ttatgattct tcccattgct cctagctcat cattagcacg
     2581 aatttcaata gccttaggtt caattttttc atgatttaaa aaacggaaaa atgattctaa
     2641 agaactaaga atcacaggca atctagatgc gacaattttt cttacgcaat aataaaccac
     2701 tcctaaaaca acaaaaataa aaataaaaga tgcaccaaga ataattaatt gtaatttttt
     2761 taagggttta aataccgaat atttaggagc agttaccaaa actgcccaag aactatcttg
     2821 cactttaaaa ctattaatcg cagcataaga atcatcacca tcagaagcta tatagttaaa
     2881 aactccattt tttccttcac ttatggcctt ataagtttct tgtgcacctt tattaggatt
     2941 gatatctttt aaatttttta aaactagatt tttatttgga tgtatcgcca taaaaccatc
     3001 tgaatttaaa agaactctta attcaccatc atatttttga cctttagggt ctaaaagata
     3061 agtagcaata tctgaaaaat ctaaagtcat gcctatgaca cctacaactt gattttttcg
     3121 atcaaaaata ggcatagcaa catttacagc atcaaaatct tgaccttcta aattcatctt
     3181 aataggacgg cctatatata ctttattttc cccatatttt gcttttttta atatatcttg
     3241 cacaacttgc agattagcta tttcatcact agcttgtatt gcttttattc cgcctttatt
     3301 atccttttct tcatcagcgt aaagcataac aaattttcca ctttgagtat taaaaaattt
     3361 actctcttct ttaaagtatt ctggcggatc aataagatat aaataagtaa aattagaata
     3421 agcactatta tcaaaagtat tggttataat atttgttata ttgtctatat ctaaatcttc
     3481 tttagaggtt gatctaaaca tttctgttaa agtacctgaa atacttttat ttaaagcgat
     3541 catttcccca aaaattcctt gagtttgagt agcatattct ttcgtgatag aagcaagaat
     3601 atcttctgta tttttggtaa tattttgact tacttgtttt gtgattaatg aaattaaaat
     3661 aacaagtcca ataacaacaa cagttgccac agaaaaaata agttttaaac ctatatttaa
     3721 agatttaaac atcttataac tcctaaa
//
LOCUS       DARGEX010000120         3680 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.121, whole genome shotgun sequence.
ACCESSION   DARGEX010000120 DARGEX010000000
VERSION     DARGEX010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.121"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1562
                     /locus_tag="SF010_001617"
     CDS             <1..1562
                     /locus_tag="SF010_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230509.1"
                     /translation="IKKNKIIIFDTNEINIKDYEMLTLTKPFISFLRIYFLELSSSYY
                     EKMNKDIQKVNKNLMEYFKKAMIGYGNDPLDALQGIEQFVHNLPKMLTHSSYKELINK
                     RKNLSKTAIIVSTGPSLIKQLPLLEKYQNKATIFCADSSYPILAKHNIKPDYVCMLER
                     TSLTAEFFNHDFKDFDKDIVFICASLIHPNAIAYLEKNNREYILISRFLSFALFIACH
                     DYGYFDQSPSVAHMSYIIAAKLCHKNIIFIGQDLAYAENGDSHPQEYQNSSTFESNIY
                     QKIECLGYGGKNSVKTHSIWLLFKQIIEQLILDYPYINTYNCTEGGAWIEGTIEQSFK
                     TTCDKLLLDDLNKPFIKLKKPNIQKQNELMLKSYAKIYKSIKHCIEFKKQTLATIEDI
                     ESSYTTLNYLSLEESKEILDILIQIIDNFKTKLENVNMVDFYEILGPLLMQFELNLAR
                     IYVLNPKTLEDSFNKSVLWIKEHLEFIHMVYGHIEAQENALFKNIIPLEEELKKRGFK
                     KYLQRIKNANK"
     gene            1549..3447
                     /locus_tag="SF010_001618"
     CDS             1549..3447
                     /locus_tag="SF010_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230510.1"
                     /translation="MQTSDIFKKNLDSMKGNVYKKLKEELKNFQELRDFSFTIGKDSL
                     NINLICKKNLKKIYQDPVQELNENLVFYQQNYYNHPFLFFYGLGNGILYKALLKNLNH
                     KRIVIIEKELEIIFIVLNFIDFSEYLFNGRIAIIYSSDYNNNTAELIFSLTNINLFFK
                     TYQINIHSAFYETYQEDIKKINNINLQTIKYLTLKKGTDPSDAMLGIEQAIWNLPEMF
                     KHYSYKELLQKRKGLNKNAIIVSTGPSLTKQLLLLKQYANKAIIFCVDSSYSILAKHN
                     IKPDYVLSLERIPLTSEFFNNDFGEFDKDVLFILPSLTHPNSIKYLNKFKKDYMLIAR
                     YLPFMISLNLKDNGYIGGGMSVAHVAYELAISLECKNIILIGQDLAYNKEGKSHTDDY
                     INLTLHEKDFERDKGRFTTTAYGGKGTVESSEIWTLFRKIFENYAINNKKCIKIYNCT
                     EGGARIEGTIEKPFEEICEEILESEIKKPLIKLKKKTKKEQFEHMLKSYQKIKKNIQL
                     ALSFQKECKKTLRKIQKITLKNEYINMDDIVKDIDNIRNKLSNKRYFFLHEILGPSLY
                     HEESLIAPIYIQSVNNESQRQNKILSWIYANESLIETIIDLIESQNIRIKKAIIPLQD
                     ELEKRNLI"
     gene            complement(3475..>3680)
                     /locus_tag="SF010_001619"
     CDS             complement(3475..>3680)
                     /locus_tag="SF010_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230511.1"
                     /translation="VQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNIL
                     AQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT         1487 a          504 c          502 g         1187 t
ORIGIN      
        1 aaattaaaaa aaataaaatt attatatttg ataccaatga aattaatatc aaagattatg
       61 aaatgttaac ccttacaaaa ccatttatat cctttttaag aatttatttt ttagaacttt
      121 caagtagcta ttatgaaaaa atgaataaag atatccaaaa agttaataaa aatttaatgg
      181 aatactttaa aaaagctatg ataggctatg gtaatgatcc gctagatgct cttcaaggta
      241 tagaacaatt tgttcataat cttcccaaaa tgcttactca ttctagctat aaggaattaa
      301 tcaacaaaag aaaaaattta agcaaaactg ctatcattgt ttcaacagga ccaagtttaa
      361 tcaaacaact acctttgctt gaaaaatatc aaaataaagc cacgattttt tgtgcagatt
      421 cttcttatcc tattttggct aaacataaca taaagcctga ttatgtctgc atgcttgaaa
      481 gaacaagttt aacagccgaa ttttttaatc atgattttaa ggattttgat aaagatatag
      541 tctttatatg cgcatctttg atacacccta atgctatcgc ttatctagaa aaaaataata
      601 gagaatatat actcatatca agatttttat cttttgctct ctttattgct tgtcatgatt
      661 atggatattt tgatcaaagt cctagtgtcg cacatatgag ctatataata gcggctaagc
      721 tttgtcataa aaatatcatt tttataggac aagatttagc ctatgcagaa aatggggatt
      781 cgcaccctca agaatatcaa aactcatcaa catttgaaag taatatatat caaaaaatag
      841 aatgtctagg atatggtggt aaaaattctg taaaaacgca ttctatttgg ctactcttta
      901 aacaaattat agaacaactt attttagatt atccatatat taatacttat aattgcacag
      961 aaggcggagc atggatagaa ggaactatag aacaatcttt taaaacaact tgtgataaac
     1021 ttctgctcga tgatttaaac aaacccttta ttaagcttaa aaaaccaaat attcaaaaac
     1081 aaaatgaact tatgctcaaa tcttatgcaa aaatctacaa aagcataaaa cactgtatag
     1141 aatttaaaaa gcagacttta gctactattg aggatataga atctagctat acaactttaa
     1201 attatttaag cttagaagaa agtaaggaaa ttttagatat cttgattcaa attattgata
     1261 attttaaaac caaactagaa aatgttaata tggtcgattt ttatgaaatt ttaggaccgc
     1321 ttttaatgca atttgaattg aatcttgcta ggatttatgt tttaaatcca aaaactctag
     1381 aagatagttt taataaatct gtattatgga tcaaagaaca tttagaattt atacatatgg
     1441 tttatggaca catagaagcc caagaaaatg ctttatttaa aaatatcata ccattagaag
     1501 aagagctgaa aaaaagaggg tttaaaaaat atttacaaag gataaaaaat gcaaacaagt
     1561 gatattttta aaaaaaattt agattctatg aaaggaaatg tatataagaa gttaaaagaa
     1621 gagctaaaaa attttcagga gcttagagac ttttctttta ccataggaaa agattcttta
     1681 aatataaatc tgatttgtaa aaaaaaccta aaaaaaattt accaagatcc agtacaagaa
     1741 cttaatgaaa atttagtttt ttatcaacaa aattactata atcatccttt tttatttttt
     1801 tatggattag gtaacggaat tttatataaa gcactattaa aaaatctaaa ccataaaagg
     1861 attgtcatta tagaaaagga actagaaatt atatttatcg ttctaaattt cattgatttt
     1921 agtgagtatt tgttcaatgg gcgcatagct ataatatatt cttctgatta taataacaac
     1981 accgcagagc ttattttttc attgacaaat attaatcttt tttttaaaac atatcaaatc
     2041 aacattcact ctgcttttta tgaaacatat caagaagata ttaaaaaaat taataatatc
     2101 aatcttcaaa ctataaaata tcttactcta aaaaaaggga cagacccttc agatgctatg
     2161 ttaggaatcg aacaggctat ttggaattta ccagaaatgt tcaagcatta tagctataaa
     2221 gaattattac aaaaaagaaa gggtttaaat aaaaacgcca tcattgtttc tacaggacct
     2281 tcgctcacta agcaacttct tttactaaaa caatatgcca acaaggctat tatattttgt
     2341 gtggactctt cttattctat acttgctaag cataacatca agcccgatta tgtattatct
     2401 ctagaaagaa ttcctttaac ttcagaattt tttaataatg attttggaga atttgacaaa
     2461 gacgttttgt ttattttacc aagtttaact caccccaatt caatcaaata cttaaataaa
     2521 tttaaaaaag attacatgct aatagctaga tatctacctt ttatgatttc tttaaacctt
     2581 aaagataatg gttatatagg aggcggtatg agtgtggctc atgtagctta cgaattagca
     2641 atttcattag agtgtaaaaa tattatttta atagggcaag atttagctta taataaagaa
     2701 gggaaatccc atacagatga ctatataaac ctaactttgc acgaaaagga ttttgaacga
     2761 gataagggtc gctttaccac tacagcttat ggtggcaagg gaacagttga aagttctgaa
     2821 atttggactt tatttagaaa aatatttgaa aactatgcaa tcaataataa aaaatgcatt
     2881 aaaatctaca actgtactga aggtggggca agaatagagg gaaccataga aaaacctttt
     2941 gaggaaatat gcgaagaaat acttgaaagc gaaattaaaa aacctttaat aaaactaaaa
     3001 aagaagacaa aaaaagaaca atttgaacat atgctcaaaa gctatcaaaa aatcaaaaaa
     3061 aatatacaac ttgcactcag ttttcaaaaa gaatgcaaaa aaactcttag aaaaattcaa
     3121 aaaatcactc ttaaaaacga atatattaat atggatgata ttgtaaaaga tatagataac
     3181 ataagaaaca aactgagcaa caaaagatac ttttttttac atgaaatttt aggacctagt
     3241 ctatatcatg aagaaagttt aattgcccct atttatatcc aaagtgttaa caatgaaagc
     3301 caaagacaaa ataaaattct atcttggatt tatgctaacg aatctttaat tgaaactata
     3361 attgatctca tagaaagtca aaacataaga attaaaaaag ccattatccc tttacaagat
     3421 gaattagaaa aaagaaattt aatctaaaga gcaaaaattt gctctttaga aaaattattg
     3481 taaaagtttt aagacatttt gttgcacagc gttagcttgg ctcatagcat atgaacccga
     3541 ctgcgcaagg atattgtact tagaaaaatt tgcactttct gcagcgaaat ccacatctct
     3601 tatggttgat tctgctgctt taacatttac ctgggttacg gtaatattat ttatcgttac
     3661 ttggagctga ttttgcacag
//
LOCUS       DARGEX010000121         3667 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.122, whole genome shotgun sequence.
ACCESSION   DARGEX010000121 DARGEX010000000
VERSION     DARGEX010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.122"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            119..1075
                     /locus_tag="SF010_001620"
     CDS             119..1075
                     /locus_tag="SF010_001620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230512.1"
                     /translation="MKTIVKEILPRVEMQQLKTDNTKSRDKARFYAELDWDSFYMKFP
                     IMQELKGEYMNLKKLFGEESDFQKQFEDFLNDTLLDIKNIKNTQEYTMALNIQAMKEN
                     KTKNAEVFKLYKKEETLPETHKAIKDLQKPSDIIDNSLYFQRFDIKNDVFLPHLDLSK
                     FDAFSLQNSIQHEKEVLDKFHSNPKYKQNFALYSIAGAFNILYIPSLIQITRVTRFYN
                     YHSLYAACKKVRAFIIDTVNFNNNGSDQPIGAWDYEKVGFDLYNSIMQYRNTKFHFKY
                     TSPKSFLFPLYNSDFLKTKQYFNLGLDFFLYSSIFLDIVLEE"
     gene            1126..1376
                     /locus_tag="SF010_001621"
                     /pseudo
     CDS             1126..1376
                     /locus_tag="SF010_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910301.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1426..2433
                     /locus_tag="SF010_001622"
                     /pseudo
     CDS             1426..2433
                     /locus_tag="SF010_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902830.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
     gene            2928..3248
                     /locus_tag="SF010_001623"
     CDS             2928..3248
                     /locus_tag="SF010_001623"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230513.1"
                     /translation="MHKIGNVAIVSLSSADKKGGSYTFTNKVSMQDFGENLYLDTEAN
                     GYEKQIKNSRENLYITNLKAYKEKEQQNTTDKIPYNETIFIRAYLNNEENFSSMRQLN
                     GHIV"
BASE COUNT         1516 a          499 c          530 g         1122 t
ORIGIN      
        1 aagctatatc tgtcaaagat tatggcatga taatccaagt gatgctaaag aattaaaaga
       61 tttaaccttt agaagctcta cttcacaaga ttttatagat actatcccta atgaaacaat
      121 gaaaacaata gtaaaggaga tattgcctag agtagagatg caacaattaa agactgacaa
      181 cacaaaatca agagataaag caagatttta tgcggaatta gattgggata gtttttatat
      241 gaagtttcct ataatgcaag agctaaaggg cgagtatatg aatctcaaaa agctttttgg
      301 agaagaatct gattttcaaa aacaattcga agattttctt aatgatactt tactagatat
      361 aaaaaacatt aaaaatacac aagaatatac aatggcactc aatatccaag caatgaaaga
      421 gaataagacg aagaatgcag aagtctttaa gctatataaa aaagaggaaa cactcccaga
      481 aactcataaa gctataaaag acttacaaaa accatcagat attatcgata atagtttata
      541 ttttcaaagg tttgatataa aaaatgatgt gtttttaccg catttagact taagtaaatt
      601 tgatgcattt tcattgcaaa actccataca acatgaaaaa gaagttttag ataaattcca
      661 ctctaaccca aaatacaagc agaattttgc tctatactct atcgcagggg cttttaatat
      721 cttatatata ccaagcctta tacaaatcac gagagttaca agattctata attaccattc
      781 tttatatgct gcgtgcaaaa aggtgcgtgc ttttatcatt gatactgtga attttaataa
      841 taatggtagc gatcagccta ttggggcatg ggattatgag aaggtaggat ttgatttata
      901 taattcgata atgcaatacc gaaatacaaa atttcatttt aaatatacct caccaaaatc
      961 attcttattt cccttatata attcagactt tctaaaaaca aaacagtatt ttaatctagg
     1021 cttagatttc tttttatata gctctatatt tttagatatt gtgctagagg agtagttatt
     1081 atgtttgaag cgacaaaaaa tacagagtaa attaaaggag ttcttatgca aaagttttta
     1141 atagttttaa ggatttgtgt tactttaagt attaatatta atgctcaatc tccagaagaa
     1201 gctaaaccta gctttaattg tgctaaagca aaaagcaagg ttgaaaagat gatttgtagt
     1261 gataaaagtg gggagttaca aaaacttgat agattatatt ctaaactcta tttttcaata
     1321 ctaaagagta tccctaaaga tacaaaaagg ggcaaaaaac aagagaaaaa ctgaaatatt
     1381 ttaatcatcc tgttatgagt aatagaaata tatttcaatg ctattttgca aaataatata
     1441 aaaatctaca accaaaatcc tgaaaatatc aaccaaaaac ttaatgaaaa tatggttttt
     1501 gagcttgcag ataatgaagc aaaagaagtt aaaaaaatca tttcttttga gaaaatacat
     1561 aatctaagaa aaaaacttca aaaatggaat gcaaactatc ttacttcttt tagtaagaca
     1621 gaattaacca atccacaaga gtttattccc ttattgtcta tttattatca gcgtccagca
     1681 agatttaacc cagagagtgg actcatcttg cttcaaaaag tccttaaaga taagaataga
     1741 tttttagtgt ggtttctgtg cgttattatg ctgatatacg acaattcaaa aacccttatt
     1801 attctcgcag aatccaagaa tctaacttta gagaagccaa taccaagcaa ggactgaagc
     1861 tgccagataa atacacttat ctttctttta tgcaaactta taagaaatgc aaagaagttg
     1921 atgaaaaaaa cagagtatct cttaagagaa tacaatacat attatactaa agacaaacac
     1981 tattattctt atgttgctaa agaagaattt cagggtatag ctgatattct cgctccctat
     2041 cttaattacc taaacaccct cactcaaaaa aattttagct tagataatat ttattgtatt
     2101 gctaattatt gtgagaattt aggcgctaat aaattggata atgttgcctt gcttaataaa
     2161 actttaagac aaaagtttga aaaactagaa gcaaatacac cccataatat tcttatcctc
     2221 tatccaaatc ccactccatc tattatacaa atagaacaac ctaaaaatac ttttattact
     2281 ttacttatag gagcaaaagc aaaaatagat tgcactaaat tgatagaaga tcaatgcgag
     2341 ctaatgtatt taaaatatga tccaacgcaa gaagaacaac aaacaagtaa tccgcaagct
     2401 ttttcttgta gcacccaaga agaacttatt taaaaaaaag aaaatgaaat atactttaaa
     2461 gcagtaaaaa acaatatatc atattttatt aataaaaacg atgggatttt aaaagttgct
     2521 cttgctggta atgaagaaaa tgctatagaa ttatacagtt ttgctaaaga aaatcaattt
     2581 aaaattttgc aagataaaac ctcaaagatg ctaaaaatct atttaaaact agaaagatat
     2641 agtagcgaag agattttatc gcatagaggg ggaattttga attaacactt aataatctta
     2701 agattttaga tgaaaatgga aacaattatg aaaccatcac taaagtattt cttcataatt
     2761 gtgagaatag aaggatttat gaaagtttaa agttagaaca tcaagaaggc atttataaga
     2821 gcagtttcaa gattgattta attttagata caaactcttc tttttttaaa agggctacaa
     2881 aatgtattat agctacaaaa accttagaag gctttagcac aagtcaaatg cataaaattg
     2941 gaaatgtggc aatagtctct ttaagttctg cagataagaa aggtggaagc tatactttta
     3001 caaataaggt aagcatgcaa gattttggag aaaatcttta tttagatact gaggcaaatg
     3061 ggtatgaaaa acaaataaaa aattcaagag agaatttata tatcacaaat ttgaaagctt
     3121 ataaagaaaa agaacagcaa aatactactg ataaaatccc ttacaatgaa actattttta
     3181 ttagagccta cttaaataat gaggagaatt tttcttcgat gagacaatta aatgggcata
     3241 ttgtataaaa aaagaagagg aattagaatg taatcaatct aaaattaaaa ttttagaaaa
     3301 tcttcaagga aatgatataa cctttaatac ttctatgctt tcacaagatg ataggaataa
     3361 actttataat atgaatgaaa aatatcaatt aatcttattt gcttatttta gtgcacctgc
     3421 atttaaaaca acacaaggaa taacgcattt agtgttaaaa tgactaaaga tttaaactat
     3481 acaaaacaaa gccattgaac ttaccctctc aaatataaaa gataaagaac aaatttattt
     3541 aaaagcgcaa aaggattatg atgaattagt acaacataat ttcactcaaa gaattttaaa
     3601 tgataaagat tctatagtgg atggaattta taatgaaagg attaaaaagg ttcatactca
     3661 aaccata
//
LOCUS       DARGEX010000122         3653 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.123, whole genome shotgun sequence.
ACCESSION   DARGEX010000122 DARGEX010000000
VERSION     DARGEX010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.123"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            105..1442
                     /gene="ffh"
                     /locus_tag="SF010_001624"
     CDS             105..1442
                     /gene="ffh"
                     /locus_tag="SF010_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG8230514.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKVVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            1508..1735
                     /gene="rpsP"
                     /locus_tag="SF010_001625"
     CDS             1508..1735
                     /gene="rpsP"
                     /locus_tag="SF010_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG8230515.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            1738..1980
                     /locus_tag="SF010_001626"
     CDS             1738..1980
                     /locus_tag="SF010_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG8230516.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTAISAYKSKDASSYRVTVKALE"
     gene            1973..2512
                     /gene="rimM"
                     /locus_tag="SF010_001627"
     CDS             1973..2512
                     /gene="rimM"
                     /locus_tag="SF010_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8230517.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNTSNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            2509..3213
                     /gene="trmD"
                     /locus_tag="SF010_001628"
     CDS             2509..3213
                     /gene="trmD"
                     /locus_tag="SF010_001628"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG8230518.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLKSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEIFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLKEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            3224..3580
                     /gene="rplS"
                     /locus_tag="SF010_001629"
     CDS             3224..3580
                     /gene="rplS"
                     /locus_tag="SF010_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG8230519.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         1357 a          394 c          704 g         1198 t
ORIGIN      
        1 aaaagttggc tttgagataa aaaatttaga tttttaaagc catttaagaa aaaattttgt
       61 ataatgcaag gtttaattta aaaattttat agaaaggtga taaagtgttt gagttagtta
      121 gcgaatcttt taaatcagcg attaataaat tacgttttgt tgatgatgaa aaagcactta
      181 agaacgcttt agaaacctta aaaaaagctc ttttaaaagc agatgttcac cataaggtaa
      241 ctaaagagct tttgactttg atagaagaag atgtaaagca aaacggaata ggtcaaaaac
      301 aatttttaaa tgccattaaa gtaaatttag aaaatatttt aagtgtcaat ggcaaaaatc
      361 aaggttttgt ttttgcttct aaacccccaa cagtagttct aatggcaggt ttgcaagggg
      421 gcggtaagac tacaagcact atcaaacttg caaattattt aaaattacgc aataaaaaag
      481 ttttagttgc agcttgtgat ttacagcgtc tagcggcagt ggagcagcta agacaacttt
      541 gtgaagctaa tgaaattgaa cttttcttta tagaaaatga aaaagatcct attagggttg
      601 ctaaagaggc tttaaaaaag gctgaaagtt ctatggtgga tgttttgctt gtggatactg
      661 ctggacgttt ggctatagat gaggctttga tgaatgaatt aaaagtagtt aaggatgttt
      721 taaatcctga tgagattttc tatgttgctg atgcaatgag tggtcaagat ggggttaaga
      781 ctgcggctag ttttaatgaa gttttaggta tcagcggggt aattttatca aaatttgatg
      841 cagatactaa aggtggagta gccttaggta tagcaaaaca aatcggtatt cctttaagat
      901 ttattggtgt gggtgaaaaa gtagcagatt tagaagtttt tataccagat cgtatagtaa
      961 gtcgtattat gggtgagggt gatttggcaa ctttagctga aaaaactgct gcgattattg
     1021 atgaaaaaga ggctaaaaaa ctcaatcaaa aaattaaaaa aggggagttt aattttaatg
     1081 attttcttaa tcaaatggaa agtattaaaa aattgggaag tatgaagtct ttaatcggta
     1141 tgataccagg acttggtgga atggcaaatg cggtaaaaga tatagatttg gataattcta
     1201 aagaaattat acacattaaa gcaatgattt cttcaatgac tccaaaagaa agagaaaatc
     1261 ctgatttatt aaataatgct agaaagcgtc gtatagcaga gggagcaggt ctttctcagg
     1321 tagaagtcaa tcgtttttta aaacaattta gcaatgcagc aaaacttgca aaaagatttt
     1381 caggtaaaaa aggaatggag agtttgacac aaatgatgag tcaagctaga agacaatttt
     1441 aaattttatt tataaatact ttttatagta tctataaata aaatttttaa ttttttaagg
     1501 agtataaatg acagttatta gacttacaag aatgggtaga accaaaagac cattttatcg
     1561 tattgtagtt acggacagta gaaaacgtcg tgatggtggt tggatagaaa gtattgggta
     1621 ttataatcct atggtagaac ctgaagtaat taaagttgat gcagagcgtt tagcttattg
     1681 gaaaagcgtt ggtgcaaaac ttagcgataa agttgcttct atcactagca aataatcatg
     1741 gtagagaatt ttcttagaga atacgcaaaa ttaattgcag attatcctga acagattgat
     1801 actcaaaaaa ttgaattaag tgaaaatttt tttgagattg ttctttttgc acataaggtt
     1861 gatacaggta agcttatagg taaaaatgga aaaatgatca atgctataaa aactgcaatc
     1921 tctgcttata agagcaagga tgcaagttct tatagagtaa cggtaaaagc acttgagtga
     1981 aaaagatttt gttcaagttg caaaacttgg taaaactgtg ggtcttaagg gttatgtaaa
     2041 attgcataac ctgagcgact tttcttctca atttaaaaaa gatgctactt tttttataaa
     2101 aaacactaaa gaaatgttaa agattaagca ttataataca agcaattcta ctgttttatt
     2161 tgaaaattat gaagatatag aaaaggccaa agaattaact aatcttattc tttttcagag
     2221 tatcgagaaa agtagacaaa cttgtaaatt aaaaaaagat gagttttttt attttgatat
     2281 tttagagtgt gaagtttttg aagaagataa gagattaggt aaagtggttg atatcttgga
     2341 aactggagct tcttatttat ttgaaattca aagtgatgaa aaatgggttg aaaaaaaata
     2401 tcctaaaata ttttttattc catatttaga taaatttgtt aaaaatatag atatagaaaa
     2461 acgacagatt ttttgcacgc aagatgcttt tttaatttta gaaaattcat gaaatttagc
     2521 ttcgtttctt tgttccctaa tcttatggaa ttttactttc aagattctat acttgcaaga
     2581 gcaaaagaaa aaaaactttt caaacttaat ttttataatc caagagattt ttctaaaaat
     2641 tcctatcata aagtcgatga ttataaaata ggtggtggag ctggactttt gatgcaagct
     2701 gaacctatgt atgaggtgct aaaaagtatt caagaaaaaa aagaaaatcc ctattttatt
     2761 tttttaaatc caagtggtaa aacctttaat caaaaagacg ccaaacgctt aagtaaaaaa
     2821 gaacatatag tttttgtatg tgggcgctat gaaggtatag atgaaagagt gcttgaaatt
     2881 tttgcgaatg aaatttttag tataggggat tttattttaa caggaggaga attacctgcg
     2941 cttgtaatgt gtgatgcgat tttaagaaat gttaacgggg ttttaggaaa tatggaaagc
     3001 ttgaaagaag aaagctttga aaataattta ctcgaagcgc ctgctttttc aaaacctttt
     3061 atttttgaga aaaaaaataa aaaattttat actccttcag agtttttaaa gggtaatcac
     3121 gctagaattg caagtttaaa aactactttg gcgtcttgca aaacgaaatt ttttcgtcca
     3181 gatttatttt tagagcatga acgcaaaaaa taagggattt tttatgaaaa ataaatatat
     3241 agaacaattt gaagcaaaac aaattgaagg taaaaatgtt ccagattttc gtgctggtga
     3301 tactttaaag cttgcaattc gcattaaaga aggggataaa acaagaatcc aaaattttga
     3361 gggtatttgt attgctagaa gaggtaatgg cgtaagtgaa acttttatcg tgcgtaaaat
     3421 tggcgctaat aatgttggcg ttgagagaat tttccctatt tatagtgaaa gtttagaaag
     3481 tattactgtt ttgcgtcgtg gtcgtgtacg ccgtgcaaga ttattctact taagagatag
     3541 acgtggtaaa gcagcgcgta ttaaagagct taaaaaataa tttataatta ttttctatta
     3601 taagtctaac aattaaataa ttataattaa tttataatta ttatttattt gat
//
LOCUS       DARGEX010000123         3638 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.124, whole genome shotgun sequence.
ACCESSION   DARGEX010000123 DARGEX010000000
VERSION     DARGEX010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.124"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..351
                     /locus_tag="SF010_001630"
     CDS             <1..351
                     /locus_tag="SF010_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEG8230520.1"
                     /translation="EYKKTAQIYKKYLISLNVNTIENSPTMFSRRLIEIIACGGIAIT
                     NHTSAVEKYFKDYCYSFQTEKELRNMLYKFQKNGLSEDDKIKLKNGAEFIAKNHTWKQ
                     RLEQIVDTIGIKKC"
     gene            345..2372
                     /locus_tag="SF010_001631"
     CDS             345..2372
                     /locus_tag="SF010_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8230521.1"
                     /translation="MLNGCYFYVNNFIQIFYKKKFYGWGRKRTGRYAFLFHKKFGGSL
                     ILFEDGFIRSLNLGVENSPSFSIVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAK
                     KAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGFAKDFKTVDMI
                     KDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLSKECILITENFNPIALLEFFDKVY
                     TKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYA
                     EYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEI
                     IFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDEDLLHFTPKISLVEDG
                     FIRSISLGSDLTRPFSLIIDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKIL
                     LENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSK
                     NQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTS
                     GFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPK
                     TKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK"
     gene            2369..3553
                     /gene="kpsS"
                     /locus_tag="SF010_001632"
     CDS             2369..3553
                     /gene="kpsS"
                     /locus_tag="SF010_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8230522.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
BASE COUNT         1363 a          434 c          586 g         1255 t
ORIGIN      
        1 gagtataaaa aaactgcgca gatatataaa aaatatttaa tttcattaaa tgttaatact
       61 attgaaaatt ctcctactat gttttcaaga agacttatag agattatagc ttgtggaggt
      121 atagctatta ctaatcatac ttcagccgtt gaaaaatatt ttaaagacta ttgttattca
      181 tttcaaacag aaaaagaatt gcgaaatatg ctgtacaaat ttcaaaaaaa tggtttaagt
      241 gaagatgata aaatcaaatt aaaaaatgga gcagaattta ttgcaaaaaa tcatacttgg
      301 aaacaaagac tcgagcaaat tgtagatact ataggcatta aaaaatgtta aatggttgtt
      361 atttttatgt aaataatttt attcaaatat tttataagaa aaaattttat ggatggggga
      421 gaaagcgtac cggtagatat gcatttttat tccataaaaa attcggtggt tctttgattt
      481 tatttgaaga tggatttatt cgctcattaa acctaggagt tgaaaatagc ccaagttttt
      541 ctatagttaa agatgatata ggcatttatt atgatgcaac aatgccttca aagcttgaaa
      601 atcttttaaa tacttatgaa tttaaagatg aagaaatcaa gcaagctaaa aaagctatag
      661 agcttatcaa aaaatataaa attagcaagt ataataacaa tcttgatatc ccagatgatt
      721 attttcaaaa agatgaaaaa cgcgttttaa tcatcactca aacggccaat gatgcctcgc
      781 ttgaatttgg gtttgctaaa gattttaaaa ctgtcgatat gataaaagat gccataaaag
      841 aaaatcctaa atctaaaatt tatataaaaa tccatcctga tgttttaagt ggtaaaaaac
      901 aaagtgattt agatataaat tccttatcta aagaatgtat tttaatcact gaaaatttta
      961 atcccatagc cttgcttgag ttttttgata aggtttatac caaaacttct ggcatgggtt
     1021 ttgaagcttt gatgcaagaa tgtgagtgta tttgttatgg tatgcctttt tatgcaggtt
     1081 ggggtctaac aaaagataaa ttagagtgta aaagaaggat gcaaaaaaga agtttagaag
     1141 aagttttcta tgctgcttat atactttatg ctgagtattt taatccttat ttaaatcaaa
     1201 aaagtaatat ttttgatact attcaaactt tagcaaaata taaagatata gaaaaggcaa
     1261 attctaatag actttttttc tttggatttt caaaatggaa aaggaaattt gtaaaacctt
     1321 tttttatagc taaaaacaat gaaatcatat ttctagattt cttagattgc ttaaagaata
     1381 tacaattaaa agaaaatgat aaatttttta tttggggtaa aaggatagat tataacgctc
     1441 ttaaaactac tcttataaaa aaagcgcaag atgaggattt gctccatttt actcccaaaa
     1501 tttctttagt tgaagatgga tttattcgct caatctcttt aggttctgat cttacgcgtc
     1561 ctttttcttt aatcattgat gataaaggac tttacataga tccaaataaa gcaagcaaat
     1621 tagaagagct tttgcaaaat gaaatttttg atgaaaatat gctaaatagg gcaaaaaata
     1681 ttataaaaat cttacttgag aaccgctttt caaaatataa tggcttaaag catgaaaatt
     1741 taaagatcaa tgccaaaata ggacaaaaga ttattttaat ccccgcccaa gttgaagatg
     1801 atgcttcgat gattttaggg ggttttggtt tatctactct tgatttgctt aaggaggtgc
     1861 gttctaaaaa tcaagatgct tatatcatct ttaagcctca tcctgatgtg ttaagtggca
     1921 accgtgtagg tttaaaagat gaaacactca tcttggaatt ttgtgatgag attgtaaaag
     1981 attgcagtat cgatagtgct ataaaaattg ctgatgaaat tcacactatt acttctacaa
     2041 gtggttttga tgctctttta agagctaaaa aagtttttac ttatggtatg cctttttatg
     2101 cgggctgggg tttaacaaaa gataaatata gatgcgaaag aagaacaaga aaactaagcc
     2161 tagaagagct tgtagcaggt gctttgatag catatccaag atatataaat cctaaaacaa
     2221 aaactttatg tgaaattgaa gtttgtttag atataatgct aaatttacaa aaagcttatt
     2281 tttcaaaaaa atatataaaa ttggcaatag attttaaaac ttttatgctt agaaaaataa
     2341 gaagatttta tgaattttta gcaaagaaat gagatttagc actaaaatta aaaaagaatt
     2401 tagcggtaaa aatgttttac tcttgcaagg gcctgtggga aatttttttc atcatcttgc
     2461 aataaaaatg aaaaaaaaac aaaccaaagt ttttaaactc aattttaacg gtggagattt
     2521 ttttttctat cctagtggaa cgaggtgtaa gtgcgatgaa aaagatcttg aaaatttcta
     2581 tagagatttt tttcaaagca aaaaaatcga tgctatttta atgtataatg attgtcgtat
     2641 tatccatgct aaggctatta aagtggctaa agaattagga attgaaatat ggatttttga
     2701 agaaggatat ttaaggcctt attgtattac tttggaaaaa gatggggtga atgcaaattc
     2761 ttctttaccg cgtgataaaa atttttatct ttctcaaaat atttttacca aagaaagcat
     2821 aaaagaaatt ccaggtggat ttaaatttat ggcttttgat gcttttttgt attggttgtt
     2881 tgcttttatt ttggctccat tttttaacaa caaacttcat catcgcactt tatatccttt
     2941 tgaattttta ttttggttta gatcattgta tagaaagtat ctttataaga ttacagaaaa
     3001 aaaactaaat gaaaagattt ataatttaga aaaaaagtac tttttggcga ttttacaagt
     3061 ttatagcgat acgcaaatta aatatcatta caaaaaaagc atagagcact ttatagagga
     3121 aaccatactt tcttttgcaa accatgcaag agctaaatct tatctagttt ttaaacacca
     3181 tcccatggat aggggctata agaattattc taaactcata aatgatttaa gtcaaaaata
     3241 tcatgtagaa ggaagggttt tatatgttca tgatacccac ttgccagttc ttttaagaaa
     3301 ggctttgggt tgtattacta taaattcaac agtaggcctt agtgctattt tagaaggctg
     3361 tccgactaag gtttgtggca atgcttttta tgattttgaa ggcttatctt atccaaaaaa
     3421 acttcaattt ttttggcgtg aagctcatgc ttataaaccc aatcctgttt tggtatgtaa
     3481 ttttaaaaaa tatcttttac aaactaatca attcaacggc aatttttata aaaatttctt
     3541 tttagacaaa taagactaaa aagctttgat taagagagct tttaaagcaa agttgttata
     3601 attaaaagca aaaagaaatt attgtatgga tagggaag
//
LOCUS       DARGEX010000124         3415 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.125, whole genome shotgun sequence.
ACCESSION   DARGEX010000124 DARGEX010000000
VERSION     DARGEX010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.125"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>3415
                     /locus_tag="SF010_001633"
     CDS             <1..>3415
                     /locus_tag="SF010_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230523.1"
                     /translation="IQTIKNLTINNKEVKQIDFIYPNFSILHAILKNIDFHQRKMLSK
                     NQILAMQILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEICTKVYLEDLE
                     EEIQDKKQGKDFNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIENIDPDDISS
                     EKFDDFKKKVLEKIGNVMESDFFKNSISPTLKNTYEKFINELLEHIKKLAEEKEYEKI
                     KIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRDYGTLLTPLA
                     AFLATRCAMFIHYINSRLLSCVLIINKKEIIDLSGFGLYLGSDESNIASNLAYKITLS
                     EEIKSIENIFSEIFLNPEQKNKGYKNTPNDSKSSNLPAFISTQKLSNLYLKNNAILKN
                     LQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKMSKNYLIISNIPNKY
                     NAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMPQDENEPYIL
                     QLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKEKLAISENEP
                     IIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEAKESIIEKEK
                     KIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNINLDLKKYGGS
                     NFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYSFVENDSSIT
                     IDDFFNELSKDLDTTNTLDKKIIKLKQMYYLDEQKCIKEFMNLDEETQRAFVAWMDIE
                     KQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFTAQMLWDFNF
                     LKTIEYVIQACIKINKEGFKEFFKEQLSIFAPPKKNSIYHIHIKSNLIIKARLQQIEK
                     ELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWSDKYMKQLFI
                     YSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIFLNYLFPTNF
                     KALQEQYESIVYQLYTFKDDSPLAVIRDHFITYPFAINSKFISFDLKKIFYGIDLCTG
                     VFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQKY"
BASE COUNT         1439 a          419 c          456 g         1101 t
ORIGIN      
        1 aattcaaact attaaaaatt taacaatcaa caataaagaa gttaaacaga ttgattttat
       61 ttatcctaat ttttctattt tacacgctat attaaaaaat attgattttc atcaaagaaa
      121 aatgctatct aaaaatcaaa tattggctat gcaaatacta gaaattttaa aacaaacttg
      181 tgataatcac aataatatag aaataaatat ccataccctt aatgagcttg atgctggaca
      241 aaatgtaaat ttaaaagatt tatcaagcag tgaaatttgc actaaagttt atttagaaga
      301 cttagaagaa gaaattcaag acaagaaaca aggtaaagat tttaatcttt tttatcatac
      361 agataaaaat aatctttgta tcgaatttat caatacttta aaagaactag ccaaagattc
      421 tgaagatata acaaccttag acgagttaat cgaaaacatt gatcctgatg atataagcag
      481 tgagaaattt gatgatttta agaaaaaagt tttagaaaag attggaaatg tcatggaatc
      541 ggattttttc aaaaatagca taagtcccac tttaaaaaat acttatgaaa aatttatcaa
      601 tgagttgtta gaacacatta aaaaacttgc cgaagaaaaa gaatatgaaa aaattaaaat
      661 catactaagt gctatagcgg gtgttgcaat agccacagtg gtagctgttc ttacaggtgg
      721 ggcaggatta gctattttgg ctgctggttt attttcttta atgggttctg caagcgagta
      781 ttatgaattt gctcaaagag attatggcac acttttaacg cctttagccg catttttagc
      841 cactagatgt gctatgttta ttcattatat taattctcgc ttgttatctt gtgttttaat
      901 tattaataaa aaagaaatta ttgatttaag tggttttgga ttatatcttg gaagtgatga
      961 aagcaatatc gcttcgaatt tggcttataa aatcacttta agcgaagaaa taaaaagcat
     1021 tgaaaatatt tttagtgaaa tctttttaaa cccagaacaa aaaaacaagg gatataaaaa
     1081 tacacccaat gattcaaaat cgagcaattt acccgctttc atttcaacgc aaaaattatc
     1141 taatttgtat ttaaaaaaca atgctatttt aaagaatttg caagaagata ttaaacaatt
     1201 tatttatttt tcctatatag aaagtccaaa ttttaactca agtaaactag ctgaattttt
     1261 cgcacaaaaa aatcaaaatg cacaaataga tttaaataca actaaaatga gtaaaaatta
     1321 tttgattatt tcaaatatcc ccaataaata caatgcagga cttagtgaaa gtttaactca
     1381 agaaatcgcc aactataata tacaagataa atacagaaga attaaaaaaa atattgatac
     1441 ttcaaaaaaa acttatgaca gcacaagaga ttatagcgaa tatagcatag aaatgccaca
     1501 agatgaaaat gaaccttata ttttacaatt aagccctttt gtgaaaatat ccaaagaagc
     1561 ttatgagaat agtaaaaaag cttatgaaga tatgcaaaag gtttataaat atttaacaaa
     1621 ttttgttgct acaccgcaga agctaccaga attcgcaaaa acagctaaag aaaaattagc
     1681 aatatcagaa aatgagccaa taatagaaat agtaaaaaag acggaaaatt tacgacattg
     1741 cgaacgaata aacattttag cttatattga ctacaataaa aaaataaatg ataaaaaatg
     1801 gcttccttat ttttatatca aaaaattctt taaacaaaac gaagccaaag aatccatcat
     1861 agaaaaagaa aaaaagatag ctcatcaata tttaactttt ttgaaaaaag agttttttga
     1921 aaaatcggat aaatcttcat ttgggaacta ttctttaatg gaatgtttat tcatttcatt
     1981 tgtcttgtat caagctaagc ttatttttcc aaatatcaat ttggatttga aaaaatatgg
     2041 aggcagtaat tttgtatata taaaatactt agataaaact tatgttttat ggacagatga
     2101 atgtccaata tatgtaaata atgagccaac aaatattaca gcatatgaag ttgtatcgca
     2161 attattaaaa atacttgaca aaaaagatta ttcttttgtg gaaaatgata gttcgataac
     2221 tatagatgat ttttttaatg aattatcaaa agatttagat acaacaaata cattagataa
     2281 aaaaataatc aaattaaagc aaatgtatta tttagatgaa caaaaatgca ttaaagaatt
     2341 tatgaattta gacgaagaaa cgcaacgagc ttttgttgca tggatggata tagagaaaca
     2401 aatatcagat ttatcaaagc ttttggaaca gatgtatgga aaagaatatt taaataaggc
     2461 aaaagaacaa aaaacaagtg aaatatttac ttatgcaatg ttaaaaattt tattaagcgc
     2521 tagtcctttt atcagcttta cagctcaaat gttgtgggat tttaattttt taaaaacaat
     2581 agaatatgtt attcaagctt gtattaaaat aaacaaagaa ggatttaaag aattttttaa
     2641 agaacagctt agtatttttg cacctccaaa aaagaatagt atatatcata tacacataaa
     2701 atctaattta ataataaaag cacgcttgca acaaatagaa aaagaattaa ttcatactaa
     2761 aatccaaatg attttagcac aagagataaa atccaattta ataatacaaa aaaatacatc
     2821 cggtttaaat ctatttatca caaagataaa agaatacttt aatgaaaaac aaattaagat
     2881 ttattggagt gataaatata tgaagcaatt atttatatac tctaatcaag aaagcaatat
     2941 atctaaaatt gctcttatgc atagcataga tatacaaact caaaaatata ctatttatac
     3001 ttatgctaag ctaaataaac ttgaccttgc ttctattgtg actggagaat ttgtgggtat
     3061 ttttttaaat tatctctttc caacaaattt taaagcccta caagaacaat atgaaagcat
     3121 tgtttatcag ctttacacct ttaaagatga ttctccttta gcagttataa gagatcattt
     3181 tataacttat ccttttgcaa tcaattcgaa attcattagc tttgatttaa agaaaatttt
     3241 ttatggcata gatctttgca caggagtttt tgacactcat ttttcctttc attatgaaat
     3301 agatcaaaag cttgaagaaa ataaagaatt tcttttaaaa agacttttgt cttatttgat
     3361 tattgatgag aaaagaaatg caactgcttt agaggatata aaagaacaaa aatat
//
LOCUS       DARGEX010000125         3329 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.126, whole genome shotgun sequence.
ACCESSION   DARGEX010000125 DARGEX010000000
VERSION     DARGEX010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.126"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            115..1896
                     /locus_tag="SF010_001634"
     CDS             115..1896
                     /locus_tag="SF010_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG8230524.1"
                     /translation="MKRRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTIMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVIMIRKLDGGVIGS"
     gene            complement(1934..2872)
                     /gene="trxB"
                     /locus_tag="SF010_001635"
     CDS             complement(1934..2872)
                     /gene="trxB"
                     /locus_tag="SF010_001635"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG8230525.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSIAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3006..3320)
                     /gene="trxA"
                     /locus_tag="SF010_001636"
     CDS             complement(3006..3320)
                     /gene="trxA"
                     /locus_tag="SF010_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG8230526.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
BASE COUNT         1170 a          537 c          541 g         1081 t
ORIGIN      
        1 aaaaactagg tataaatttt tccttcaatt taaatttttc atcaaagttt ctaaaaagtt
       61 tccaaatatt tttatacttc cattgtttta aattttaata tggggtaaaa acaaatgaaa
      121 agaagattgt ttttaaaagg ttcagcttta ggttctatgg tggctttttt tgcaagttca
      181 aatttaagtg ctgctatgct taaggataag gatttgctag gttttaaagc tgttagtgca
      241 agcacacaag ataaagttat agtaccacaa ggttatgaag caaaggtttt aatttcttgg
      301 ggtgatccac tttttagtaa agcaaaacct tatgatgaaa ataaaatcat cgacatgaat
      361 gcagttaaaa atgctcattt ggtttttgga gatgacaatg atggtatgag tttttttcca
      421 ctttcaaaaa acagaggaat tttagccgtt aataatgaat atataaatcc tgaaatcatg
      481 tttaatcatc atggtaaaaa tttaagcaaa gaagatattt tatatgagca agccagtgtg
      541 ggtgtgagta tcttagaaat cgaaaaaaaa ggtgatgatt ggactgtggt tttagactct
      601 aagtataacc gcagaatcga tgcaaacact aaaatgcaag taagtggagc agctaaaaaa
      661 gaagttttaa aaaatgaaaa atttgttcat ggaacttttg caaattgtgc aaatggacaa
      721 acaccttggg gaacttatat cacctgtgaa gaaaattttg atgatttttt tggaagttta
      781 gatgaaaatc tagaatttaa tgactctctt aaacgctatg gatttaacaa aactagtctt
      841 tatggatggg aaaaatttga tgaaagattt gatttagcta aaaatatcga tgaagctaat
      901 cgttttggtt ggatagtgga aatcaatcct tttgatgcac aaagcacacc tgttaaaaga
      961 acttctttag ggcgttttaa acatgaaaat gcagaaatta tcgtagaaaa agatggttct
     1021 gttatagttt atatgggtga tgatgagatg aatgaattta tttataaatt tgttagcaaa
     1081 cataaataca aaaaaggtgc tgatacaagt aaaattttag atgaaggtat tttgtatgta
     1141 ggacagttta acggcaatgt gggagatttt aaaggacagg gaaaatggat agctttagaa
     1201 tatggcaaaa acagcttaaa tgaaaaaaat ggttttaagt ctcaagctca agtactcatc
     1261 aatacgcgtc ttgctgcaag cattgtaggt gcaactccta tggatagatg tgaatggata
     1321 gcaagtcata aacaaagtgg ttctaaagag gtatttgcaa cactaacgaa caacaaaaat
     1381 cgccaagaac ctaatgcagc aaatccaagg actaaaaatg tttatggaca aattttaaaa
     1441 tggatgccaa aaaattctca taaagacgat gattttactt gggaaatttt tgctcttgct
     1501 ggaaatcctg ataaccaaca aggcttatat aaaggctcaa ataatattac aagtgaaaat
     1561 aaattcaatt ctcctgatgg acttaaattt gatagagatg gaagactttg gatacaaaca
     1621 gatggatctt attctaataa agatgagtac gaaggtatgg gaaataactg catgctagca
     1681 gcaaatccaa aaacagggga aatcagacgc tttttaacag ggcctattgc ttgtgaatta
     1741 acagggattg cttttagtga ggattatact ataatgtttg taggcataca acatccagga
     1801 gaaggtttaa aaggtagtac ttttccttat ggaaaaacac caagatcgag tgtaataatg
     1861 ataagaaaac ttgatggtgg agtgatagga agctaaataa aaataaagtt gcttttagca
     1921 actttataaa atcttaatgc aagctttcta tataagccat agcacttaat gcagctacag
     1981 ctccatcacc tgcagcacaa atcacttgct taggtgcatc ttttctaaga tctcctgcgg
     2041 caaaaagtcc agcaatacta gtttgcattt taagatcaac acttacttgc ccaccttctt
     2101 ccatattgca taaaaactta ccatcatctt gttttaaaat ttcatttctt acattaagac
     2161 caacaaaagt aaaaattcct ggaacattta aatctctaat actaccatct tttaatttta
     2221 cttttacccc agtaacaccc attttatcac catatacttc atctacactt gcactagtaa
     2281 tgagttctat tttttcattt ttcttaactt tttctactgt agatggagcc gctctaaact
     2341 catctctgcg gtggataaga taaaccttag aacaaatatt tgctagatac aaggcttctt
     2401 ctaaagccgt atctccacca cctaaaactg caacttcttt atttttataa aaaaatccat
     2461 cacaagttgc acaagtactt acaccttttc caaaaaattc atcttcgcct ttaaaacctg
     2521 ctctttttgg agccgagcct gtgcaaacta tcacagcttt agcaagttct gttttaccac
     2581 cttctaattt gatggtaaaa cttccatcac tattttttaa aatttgttct actccaacca
     2641 tttcatgttt taaaccaaaa cgcatgcatt gttcactcca aggagccata aaagaaattc
     2701 catccataac ttgggctaca cctggataat tttctatctc agaacttgag gtaatttgtc
     2761 caccaggcat acctttttca aacattacta catttttaag tccacctcta gttgcataaa
     2821 gtccggcact aagtccagca ggacctccac ctatgattgc tacatctaac atttatattt
     2881 cctttatatt gaattttatt attaataatg atataaaaat tattcttaat agtagttaat
     2941 aaaaattatt atttagtata aatttgaaat ttttaagaag aaggctagtt atactagcct
     3001 ttagtttata gtaaagagtt taatttatcg ctaattgctt gtttagattg tgcaccaact
     3061 agttgatcta caacttcacc atttttaaag aaaataagcg taggaataga gcgaacacca
     3121 aattcagctg ctaaatcacc ttgttcatct gtatttactt tgcaaatttt agctttacca
     3181 tcgaagtcat ttgcaagttc atcaataact ggagcaagca ttctacaagg tccgcaccat
     3241 ggagcccaaa aatcaactaa agctacacct tcttttgctt gagcaaaatt atcacttgtt
     3301 aattcaatat attttcccat aatttttcc
//
LOCUS       DARGEX010000126         3319 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.127, whole genome shotgun sequence.
ACCESSION   DARGEX010000126 DARGEX010000000
VERSION     DARGEX010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.127"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            753..3319
                     /locus_tag="SF010_001637"
                     /pseudo
     CDS             753..3319
                     /locus_tag="SF010_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
BASE COUNT         1129 a          508 c          636 g         1046 t
ORIGIN      
        1 aaaagacttt gataaagata gtatcttttt atctaatatg attatgaatg tgagattgaa
       61 gtaaaaagat agtagatttg gtaaatttaa atcttgttaa gtttattatt tagttcaaat
      121 aaaaaatata aaaaaatata gaaatttaat agaaagaaga gaagtttagt taaaagtttg
      181 tttggtgcaa gccacaaggg agtttcgccc cttaagaaaa ggggcaaggc taataagcct
      241 tgacagtaat tatacaaatt agtataatta taagtacgaa acgaaacata gtttcacccc
      301 ctttctaggg cgtgattttg ccacagggtt gcagccttgt ggcaaaaccc ttaatgcaat
      361 tataccaaac aaactcttta acttctttaa tatagtccat gaaaagattt tacttgttat
      421 tccttagcac tttgtttttt gcaccttcat ttttatttgg tgcaaatatt aaaaatataa
      481 aataatatag aaattcaata gaagaagaga agcttagtta aaagtttgtt tggtgtaagc
      541 caaagggatt gttctaaacc ctgcaaaagc aggggatact caataagcct tgacatagca
      601 aagcattaag agtataatta ttagaacaat tttgagcatt aaactcacct cccttctggg
      661 tggtaaatta acgctaaagg gtggcagccc tttggcgttg caccctttta taattatacc
      721 aaataaactc tttaacttct ttaatatagt ccatgaaaag attttacttt ttgtttttta
      781 gcactttgtt ttttgcacct tcatttttgt ttggtgctac aaacatagct aatggaaatc
      841 taatctatac ttggggttat ggcgatgtga tgaatgaaat catgcaggcg gttaaaggta
      901 taaccactga aacagattat atcgttaatg cagccttggc tatttcatta ttgcttttca
      961 gtatcaaaaa agcaatggat ggacaaacaa gtcctgtgtt tgaatttgga aaaatgttta
     1021 tgctttttgc tgtagtgtgg tacatgtttt taaaagcacc aaatgacaat aatcaccgct
     1081 tcatgattca cgatgaagtc actagcaaag attatgtcat ttctcaaatt cctataggta
     1141 taggaaaaag ctttgcattg atgacgcaat ttgagaaggt tatcctagaa gctatggaaa
     1201 aacatttttc aactccacaa tctacaaatt tttctaatgc aggtttaggt ttttcacttc
     1261 aagtgatgag tactttgcca agcttaaagc tttcggctat tgatgcaact ttgcaaaaaa
     1321 atattgattt ttattttaga aactgcgttt cagtaggtat cttgcttaat caacaaggta
     1381 gaaatctttt tcaaaactct gataatttaa tacaagatct tttcacaaac ataggcaatg
     1441 gctctcagct tactcctttg tttgaaaata acaataatat tgaaaaacaa agtgttgtgc
     1501 cttgttctga tgcaggtcct caaatcgttg aaatgattaa aaacgataca gatgaagcta
     1561 tgaagattca tgctgctttg cttggtatgg cgaatgatat ggcaaattat gagcaaaagt
     1621 tcttaggcgc tgcacaaatc tataacgaac aagctgtaag tgctagatct tatttgcaac
     1681 aatccatgat aatgcttgct tctcaagatg caatcattaa taccgctaaa tcagtaggtt
     1741 taaatcctgc ttctgtggct gcaaatactg cttatgcgga tcagcaattt tatgcaagta
     1801 tgcaagcaca aggacacttg gcacaaactt atttgccttt agctaaagct tatttaacag
     1861 ctattatcat aggtttgtct tggcttgttg ctttgctttc tattgtgttt ggctcttatg
     1921 ctcatattaa gatgtttttt actctatgta tttggatagt actttggact cctatacttt
     1981 gtattattaa ttttataaat gattttaatc ttatgaatgt tgcacaggtg ataacaggtg
     2041 gaaaagcagc tttaagctta ggagataaca ttcttatatt caaagaagta gcaaatagat
     2101 caaatttcat gaattatctt gtaatgagta ctcctgtttt agcttatgct atagctaaag
     2161 caagtgaaca aggatttgta acttttgctt ctggattatc tcaagctcta acaggtgctt
     2221 caagagctgc tggaagcttt gcaaatcagc aagccttatc tacacaaact agcattgctg
     2281 ctcctagagg agatgaagtt tgggcgatga atgcaggggt gatgagcttg caaagtgcta
     2341 taagtgcagg gggtggtaga tttagcatgt ctagtataac agggggtgga acaacagcta
     2401 gagatgtgaa tacaggtaca agttttgctt tgggaaatca tggtgaaatt tctaatatga
     2461 ataggacttg atgcaaaaca cgcacaaagc gaaactcaaa ctagacaaga ttctcttgct
     2521 aattctattg ccgatactca caaaacaggc attaatcacg gtattacctc tgattatctt
     2581 agaaatcatg gtgcaggagt agaagatact aaagcaattg agaaagcaga aacgaaagct
     2641 ttaaaagaaa ctatgaatga agcattaagc gataaatcta gcttctctga aacagacaaa
     2701 aaagctttag aaggaagtat tagcgcttat gctagtggct cagcagggat tgaaatcttt
     2761 ggaaatggtg gaaaaatagg tggagaaatt aaagggacag cttcaatagg cacaggctca
     2821 actgaaacac aagaatattc aagaagccta agtaaagaag ggtaggctgc atttgataaa
     2881 atgtatgctg aaaaacttgg caatatcatt aaatctaatg atagtgtggc ttctgcttat
     2941 tctaatgctc tatctacaag cacaggtagt gaatttgctg atgccaaaca aaaagcacat
     3001 tcttatagtg aagcaagtca atacagtgaa gctatacagg caagtaattt tacctaatat
     3061 ggctgaaaat tacattgctg aaaataattt gggtggaact agagaacaac aagttgctgc
     3121 tgcagctaaa gggttagaaa acttagccgc aaggggagat ttgcaaggct tgttgcatta
     3181 tgctaatatg aatacagcta agccaaatgc tgatagaaat catgatgtta gcaataaatc
     3241 ttattacagt ccttcaagtg taggagctaa taatgctcat aataatgatg cagtagctaa
     3301 tcaaaataag ttaaacagc
//
LOCUS       DARGEX010000127         3195 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.128, whole genome shotgun sequence.
ACCESSION   DARGEX010000127 DARGEX010000000
VERSION     DARGEX010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.128"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            50..397
                     /locus_tag="SF010_001638"
     CDS             50..397
                     /locus_tag="SF010_001638"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230527.1"
                     /translation="MNNFISIIDKYIIFINKIDTLPDTYTLMKIAFNADYFLFNLVPF
                     ASSLDKNFICSIPQKEQLLENMINSYEKMDLLYKTKLKTEIQEMIYPAIYATKKLNHF
                     IDIAKGRLNACGK"
     gene            381..554
                     /locus_tag="SF010_001639"
     CDS             381..554
                     /locus_tag="SF010_001639"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230528.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNAKIKN
                     YSSGYCKYYCKIA"
     gene            570..1430
                     /locus_tag="SF010_001640"
     CDS             570..1430
                     /locus_tag="SF010_001640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230529.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQEGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQINLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            1418..>3195
                     /locus_tag="SF010_001641"
     CDS             1418..>3195
                     /locus_tag="SF010_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230530.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RNEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPMVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNKSSSSAKKPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIKFDKEKYFSDCYS
                     FKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKGHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNEKRSKKQIANYFYQDEKDTSKGKKAYFYYDDESIKDRFGTLPE
                     GEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKCCVRLYTNKECSKTFKELKIKESNEK
                     ENKKSKKEQSIIKDNLYLYSINEKGE"
BASE COUNT         1321 a          373 c          468 g         1033 t
ORIGIN      
        1 tcttaattat ttttatcttg cttctaatag cactactaat ttagatgaaa tgaataattt
       61 tataagcatt atagataaat atatcatttt tatcaataaa atagatacat tgcctgacac
      121 ttatacactc atgaaaatag cctttaacgc tgattatttt ctttttaatc tcgtcccatt
      181 tgcttcaagc ctagataaaa actttatttg ctctataccg caaaaagaac aattattaga
      241 aaatatgata aattcttatg aaaaaatgga tttattatac aaaacaaaac taaaaaccga
      301 aattcaagaa atgatatacc cagcgatata tgcaacaaaa aaacttaatc atttcataga
      361 tattgccaaa ggaagattaa atgcatgtgg aaaataattt aagtcctgaa gatagacaag
      421 gtatagaaaa ttaccttatt attttaaata cgataagttt tctaggcgat ttgaatataa
      481 aatataacaa tcataatgca aagattaaaa attattctag tggttattgt aagtattatt
      541 gtaaaatagc ttagatttta ggattataaa tgaaaaaact tttttataga cttaattttt
      601 tatttaatac aaaattaaaa aaattaactt ggattgtagc tatattattt atcggatata
      661 aattactttt ttataccgaa attaaaaatg gttatgtaaa agtgacttta cgtcctatag
      721 taacacttaa tcaagagggt tattgcataa aagaaggtag aagattaagc caaaatgaat
      781 tatttgaaag agctactaaa gattggcttg aaaaacttta taaccaagca catgatccac
      841 tagttatgaa tgcagatgga gattggcttg atatcactaa ttgctattat tcaagcaaag
      901 aaaaagcaaa gaaaggttta aattgtcaat tttacagcaa cggcaaacaa tttggtatcg
      961 atgatattgc aaaacaaatt aatcttaata aaagccaaga agaaaatatg caaaaaataa
     1021 tgcaaggctt tagcattgta agaccttttg aggaggaaaa aattttaaca gatgatttag
     1081 agcttaaata ttctttactc ttacaagata ggttaggtga ttttactttt atgccttatg
     1141 atattagatt tattgtcgtt ggtggtgata ctggttatta ttcaaaattt ggttattctg
     1201 tttttgcttt aatgatacaa aaatatttta ttggaaacga ccatgacttt aaatttaaaa
     1261 aaggcactgt agaatattgg aaaaataaag ataataaaaa caatcatgaa tacatatatt
     1321 atcccattac aaattgtggc gaagttgaaa tgcgttatga ctttgatcct cctggattat
     1381 attatcaatt atttcatgat atgcaatgga gggatgaatg gcatcgttaa atttaaaagg
     1441 cgattatgga gtagaaattt tatcctatta tctttggggg caaagcacac cgccaagtga
     1501 tttagccaga aaagataacc gtgtgcttat aggtaaagat tatcaagcaa gaaatgaaaa
     1561 agaaataatc atacaagctt cagcacttga ttatatgaaa tatgtagata gatataccaa
     1621 tgctacaaat tttgggatat ttcaaaattt tttcaaaagt gtttttagtg aaaaagaact
     1681 tggggaattt aaagataaaa tagaaaatga aacatatatt ttagaattag acgatatcat
     1741 aaaaactaag gtatatggag gtgtaaatcc gtttcttgat gaagataata agaataaaga
     1801 taaaagcact aaagataaag aaaataatga agaaaataaa tacgaaaaat acgatgaaaa
     1861 taaaatggca gttagaataa ttcattatta tttagataca aattcaggca attatgctaa
     1921 aagagctttt gcttttggaa gcacaagtat agcatttaat aaagatgtaa aatttcatat
     1981 tagtgctaaa acttatgaac ctgtttgtat ttccaatcta aaactttatc ctttaaagga
     2041 taattttgat tttgaaagtg atagcagtct tgcagaattt gtaaatttct ttctagaaaa
     2101 ggaattagat cccttaaaaa taggtagaac ggttaatatt cattttatag atcaagaaaa
     2161 gattacacct atggttattt ataaaagagt atttcaaata cttcaaaacc aatcttttaa
     2221 ttctttaact ccttctataa cttcacttcg tgaatattat aaaacccgta tcctgccatc
     2281 tggggtatta tatttgcaag atgacaatac aaactctcaa accaatttag aacagactat
     2341 cctctacaac aatacaagtt ttaacaaaat ttcaaaagaa cccttaaata aatcctcatc
     2401 cagtgctaaa aaaccttgct ttatcacttt atatttaaaa gatgaacaca ataaacccat
     2461 tgctaatgct aaaatcatta tcaaaggttt taaacatgat gaagctttaa gagtagttaa
     2521 tctaaaaaga cgcagtgatg aaaagggtaa aataaaattt gataaagaaa agtattttag
     2581 tgattgttat agctttaaag taaagcttga tgaaagtgaa gcttattttc ctactccttt
     2641 acaaaatgct aaaaggatat ttaataatta tacccatcac aaagttggac tcatacttaa
     2701 atttaaagca aaaggtcatt tagtttatga tggatttaat ctctatcatt ataaaggaaa
     2761 tgaattaatt aattcttata tggcaagaag tggtactgct aaggcagata atgaaaaaag
     2821 aagtaaaaag caaattgcaa attattttta ccaagatgaa aaagatacaa gtaaaggtaa
     2881 aaaagcttat ttttattatg atgatgaaag tattaaagat agatttggca ctttgcctga
     2941 aggagaatat tatttaaaga ttaatgaaat agctaaagat actaacccta gctttttaaa
     3001 agattatccc tttgaaatag gaaaaacttg gggaaaatgt tgtgtaagat tatataccaa
     3061 taaagaatgt tctaaaactt ttaaagaatt aaaaataaaa gaaagtaatg aaaaagaaaa
     3121 taaaaaaagc aaaaaagaac aaagtataat aaaagataat ctatatcttt actctatcaa
     3181 tgaaaaggga gaatt
//
LOCUS       DARGEX010000128         3191 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.129, whole genome shotgun sequence.
ACCESSION   DARGEX010000128 DARGEX010000000
VERSION     DARGEX010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.129"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            30..2141
                     /locus_tag="SF010_001642"
     CDS             30..2141
                     /locus_tag="SF010_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG8230531.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPILAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISVIKKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            2122..2319
                     /gene="kcuS"
                     /locus_tag="SF010_001643"
     CDS             2122..2319
                     /gene="kcuS"
                     /locus_tag="SF010_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG8230532.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(2359..2772)
                     /locus_tag="SF010_001644"
     CDS             complement(2359..2772)
                     /locus_tag="SF010_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8230533.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            2834..>3191
                     /locus_tag="SF010_001645"
     CDS             2834..>3191
                     /locus_tag="SF010_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230534.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLI"
BASE COUNT          988 a          427 c          635 g         1141 t
ORIGIN      
        1 tgaaaatatt ttattttctt aggagaaata tgactcagtt aagtactaaa attttatggt
       61 tgtttgttgc aactttaggc gctatttgtt ttggttattt agctttacaa aatggcgaaa
      121 gtgtatcagc gatttatttg gtggttgctg ctgtatgtat ttatatgata ggatatagat
      181 tttatgggcg ttttgtagct tataaggttt tagaacttga taaaaatcgt gcaacaccag
      241 cacttgtaga aaatgatggg cgtgattttg tgcctacaaa taaagctgta ttatttggac
      301 atcattttgc tgctattgca ggagcaggtc cattagtagg acctatcttg gccgctcaaa
      361 tgggatattt gccttctatg ctttggattt tagtaggagg agttttagcg ggtgctgtgc
      421 atgattttgt tgttcttttt atatctactc gtagaaaagg tagaagtctt ggcgagatga
      481 ttaaggatga gatgggtaaa tttacaggtg gagttgctat ggtggcgatt tttggcatta
      541 tgcttattat tattgccatt ttagctatgg tggttgtaaa agctttagca gaatctccat
      601 ggggtttatt tactatcgca atgactattc ctatagcaat atttatgggc atttatatgc
      661 gttttatccg tccaggtaga gtaggggagg cttctataat aggttttgtg cttttaattt
      721 tggctattca ttatggtagc gttatagctg ctgatcctta ttgggctaaa atatttactt
      781 tagaagctcc aattttggca attgttatga tggcttatgg ttttattgct tctgttttac
      841 ctgtgtggtt tttacttgct ccaagagatt atctttcaac ttttttgaaa atcggtgtta
      901 ttgtggtaat ggctgtagct attgttttgg ttgctcctga tttacaaatg ccaaaagcaa
      961 atactcagta ttttgatgga acaggtccag tatttgcagg tggagtgttt ccatttttat
     1021 ttattaccat tgcttgtggt gcgatcagtg gttttcatgc tttgatttct agtggaacta
     1081 ctcctaaaat gcttgaaaac gaaactcatg ctttggctgt tggatatggc tctatgcttg
     1141 ctgagagtgc tgtggcgatt atggctttaa tttgtgcttg tattttacat ccaggtcttt
     1201 attttgctat aaattcaagc tctgctttga taggaacaga tgttgtaaat gtagcacaaa
     1261 ctatttcaag ttggggattt agtattactc ctgaagaaat tactacttta accacaaata
     1321 taggagagca tactatactt tcaagaacag ggggagcccc gacttttgct ataggtgtag
     1381 ctttgatctt acatgaactt tttggcggcg tggatttgat ggctttttgg tatcattttg
     1441 ctatattgtt tgaagcttta tttattttaa cagcggtgga tgctgggaca agggcttgtc
     1501 gttttatggt gcaagatata ttgggtaatg tttataaacc tttaggagat attcataatt
     1561 atccagctgg acttttggct acggctttaa gtgttgcagg ttggggatat tttctttatc
     1621 aaggtgccat tgatcctaag ggaggaattt atacgctttg gcctcttttt ggcgtgagta
     1681 atcaaatgct tgcgggtatg gctttacttc ttgctacaac tatacttgta aaaatgggca
     1741 aggcaagata tacttgggtt actttagtac ctgcggtatt tgtcttagtg gcaactctgt
     1801 atggaggaat tcaaaaaatt atgccttatg aagaaggcaa taaagtagca aatgcggtaa
     1861 gtcatgtagc cgccgttagc atacaaagtc aaaaaattaa agatttagaa tttaaattaa
     1921 ataatactaa agatgaaaaa gaaatttctg taattaaaaa agaaatttca atagccactc
     1981 aaaataaagt tggaaattta cttaatgcaa ttctttgtgt gttctttatg atagctacct
     2041 tgcttgttat aatttcttgt ataggaattt gcttaggtaa aattaaaatt cctcttaaag
     2101 aaactaagta tattaagatt gatgaatttc aaaaaattta agtattatta tgaaaaagcc
     2161 gaaaggtttt ttcatccctt ggtgggactt tctagttatg ataagtattt agaacacatg
     2221 aaacaaaaac atccaggaaa aattccaaaa accagagggg aatttttcaa agaatgtcta
     2281 gataaaaaat ataatagtgg cggtttaaat aaatgctgat aagcttaaag gataaagttt
     2341 tatcatacaa aataagcttt aagcatttaa aaagccatga attcttttaa gttcttcact
     2401 aataggcttt ttctttccat ctcttgtaac acttacataa gttactaaag ccgaagttac
     2461 attaatgcaa gaagtacaac cttgagaatc cactctttga gctgtgactt ctacttcaac
     2521 gctgattgaa gtgttgccca catttacaac tttagagtaa caagaaatta tatcgcctat
     2581 aaaaacaggt tctttaaaaa ctactttatc catagagatg gttacaacgc gttcaggaga
     2641 aagttctctt gctgcgatag ctcctgctaa atcgatttgt gaaagtatcc atccgccaaa
     2701 aatatttcct gctggatttg tgtcacttgg catagctaca atttttaatt ttggttctcc
     2761 catatctctc atttttactc cttattttaa aaaatgaatt ataattaaaa aagttaaaaa
     2821 ggagaataaa agtatgaata attttaaaga aatagctaaa ttggttagaa aatacaaaga
     2881 aagaaataat gcgttatatg agtttttaga caaagaagat gtgggcgagt attttagatc
     2941 tttgatttct ttaagtgagt taaaacaaga taagacaact atgctagcca tacttaggcg
     3001 tttggttgat ttaaaggaag aaaatttagt tcaagagtgg aaaaaaaaca actttaagga
     3061 agataagatt atagagttaa aacataagtt ctatgaagag gttagaaagt tttatgaaaa
     3121 agaacatcaa aatttaatta atgaaataaa agagaaaaaa cttttaaata atttttatca
     3181 gtccttaata c
//
LOCUS       DARGEX010000129         3107 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.130, whole genome shotgun sequence.
ACCESSION   DARGEX010000129 DARGEX010000000
VERSION     DARGEX010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.130"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            5..856
                     /locus_tag="SF010_001646"
     CDS             5..856
                     /locus_tag="SF010_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEG8230535.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGVNLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
     gene            853..3107
                     /locus_tag="SF010_001647"
                     /pseudo
     CDS             853..3107
                     /locus_tag="SF010_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
BASE COUNT         1101 a          460 c          560 g          986 t
ORIGIN      
        1 aataatgaaa ttttatacta ttttaagcat tctatttata agctttatgt tgagcgcttg
       61 tgctgttttg caaaaatcat ctccacttca agaaaataaa gatttttata tacttgatac
      121 gcatactcaa aaaaagattt cttttgaaga tatgatttta gaattgctaa aagcagatgt
      181 gatactgctt ggcgaaaaac acgatgaggt taaacataag ataagtcaag ttatgatttt
      241 taatgcctta gaaggaaatt taagttctca aaatataaac tttgatgtag ctttagaaat
      301 gttagcaagc acagagcaaa atcacttaga taaagctttt aaaaataaaa aaaccattaa
      361 agccaatgaa cttactaatg cattaaattg ggataaggtc tggaaatgga aagattatga
      421 gcaatttgtc aatgtggttt tttattcaaa gtcaaaaata ttgggtgtaa atctttcacg
      481 ctcagaaatt acaagtattt ataatggggc tcagccctta aagggttatg tttcaaccac
      541 aaatgaagta aaaaaacaac tttttgacat tatatcctta agccataagc taaatcctga
      601 agaaaataaa gaattactag ataaattggt ggaaattcaa caattcaaag acaggcgtat
      661 ggctgatgta ttggttcatc atgtaaataa agttttattg ctagctggaa gctatcatac
      721 aagtaaaaaa ataggaattc ctttacatat acaagatttt aaaagcagta aaaaaatagt
      781 tgtagtgaat ttaagctatg gagaaataga tttaaaagac agtgattatg ttttgattta
      841 taagggggag gaatgaaaaa attaagttta ttttgtgctg taggtttatg ttttgctagt
      901 tttgcttttt ctgaagaatt agaatttgat agtcttgaaa tttcaggttc aaaaatcaaa
      961 aacgatgaaa aaccttttgt aacttctgga gcaacaagca caagagaggg tataggttca
     1021 gatacacaaa gtatagattc tatagtgcgt agtatacctg gaacctacac aaacacagat
     1081 caagctcaag gtacagttca agtaaatatt cgtggtatga gtggttttgg gcgtgttaat
     1141 accatgattg acggtgttac tcaaactttt tatggtagtg catcagatga tccagctaga
     1201 tttcattcac aaacgggaac ttcagctttt ggagctgtta ttgatacaaa tttcttaatc
     1261 ggagttgatg ttacaagggg aacttttgaa ggagtaggtg gagcaaatgc cttgatggga
     1321 tcagcaaatt ttaagaccat aggtataaat gatattgtac atgatggcaa tatctttgga
     1381 tttttaggac gattttctta tggaagcaat ggaatcggac caagttatat gagtgcagtg
     1441 gctggaaaga ctgaacttga aaataatgga tatgtgggcg cgctttttgg ttatagcgca
     1501 aagagaatta ctcaaaatta cactgtaggc gggggtggca agataggtag tagtatggtt
     1561 gatactgatg gagatggtat agctgatacc aatatcgctc cttttgatcc agatttttta
     1621 acccaaaaac caaactctca actttttaaa ctcgaatatg tcccaaattc ttttacaaac
     1681 actatatttt cttatcgtag atatcaaaac gaacttgccg gtagaaaaat acacaatgac
     1741 aattatcaac ttgatttttg gcacaaccct aatgagtggc ttaatgtaaa tacgcttatt
     1801 gcctacaatc aaggcataca aacctatgga tcaaaatcta cttttgcggc aaacgatgcc
     1861 atagctaaca caaaggcaaa aaatactgcc actacttttg atataagtga tactttagag
     1921 ggtgaatggc atggatttaa tctaaacaca cgctttggag caaatatttt gcttaatgat
     1981 tataaaaata ccttaaatac atcaattcaa ggagtaaatt ctataccttt tcagcctcgt
     2041 ggaaaacaaa atctttttac ttattatctt gataatagtc taaattatgg tatctttaca
     2101 cttgatacta atgtgaatct tttagattgg aatatcaaag gacacagacc tgcttgcgat
     2161 gaagtaaatt ttatgtgttt tccaaaagcg gcgacagata tagataaaaa tggacttcgc
     2221 ctgaatgctt ctgtcatgct ttcagctgcc atacacgagc tttttacacc ctttgtaagt
     2281 tttgcgagaa caaatagagc ccctaatgtg caagaaatgt ttttctcaaa taacgaaggc
     2341 aatggtatca atcctttctt aaaaccagaa caagccaata cttggcaaat aggttttaat
     2401 tcttttaaac atggactttt aaaagatgat gatcgctttg gttttaaagc cgtgtattat
     2461 catacaaaaa taaaagatta tatttataat gaacaatttt atcttgaaga tccaagtaaa
     2521 attcctccaa gctcgcaatt ttatatgcac ttaaattcag ctgatgatac tatatttaag
     2581 ggtgtgtagt tagaattaag ctatgacttg ggttttgctt atgctaaagc tatgtattca
     2641 agacaagata caagttcgac tatttctcaa acttcaggac ctcttcttgg ctctttttcg
     2701 gcaagtaaaa tcatggagct tccaaaagat tatgcaaatg tagagcttgg ctttagacta
     2761 aatgacaaaa taagctttgg tggtatagca aaatacacag gcaaagcaaa aagggtaaat
     2821 ccaaatacag atgattggaa taaggatcca aacaatcctt attatcctaa accaaccaca
     2881 caagacttac caaaaattcc tattatagta gatttatatt ggaatataga atggtttaaa
     2941 aacctcacaa tgagagcaga ggtgcaaaat ttatttgata aaaactacat ggatgcctta
     3001 aatgcttata attccttaga taatcagctt caatataatg gagcaggtga tcctatctat
     3061 ctttttagca attctgctcg cggtcgtact tttatagtaa gttttga
//
LOCUS       DARGEX010000130         2946 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.131, whole genome shotgun sequence.
ACCESSION   DARGEX010000130 DARGEX010000000
VERSION     DARGEX010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.131"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            47..1282
                     /locus_tag="SF010_001648"
     CDS             47..1282
                     /locus_tag="SF010_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG8230536.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDVAINAFIVSIISAACGFLSWVVLEWLIYKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(1342..2253)
                     /locus_tag="SF010_001649"
     CDS             complement(1342..2253)
                     /locus_tag="SF010_001649"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG8230537.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLPDFN"
     gene            complement(2250..>2946)
                     /locus_tag="SF010_001650"
     CDS             complement(2250..>2946)
                     /locus_tag="SF010_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8230538.1"
                     /translation="NDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEIS
                     NLAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDL
                     AVHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKL
                     RKIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTS
                     DAYKVQEILERFA"
BASE COUNT          873 a          402 c          548 g         1123 t
ORIGIN      
        1 aatataatta tctcgcaatt aaatttttgt aagaaaggac aggtaaatga atgcgataaa
       61 ttcaagtttt attgtgttgt gtactttgct agttttgctt atgactccag ctttggcaat
      121 gttttattca ggtatggtaa gaagtaaaaa tactcttaat actataatga attgctttat
      181 tgtttttggt gttattactt tacaatgggt agtgcttgga tttagtcttt cttttggtaa
      241 agatgaagga cttgggcttg taggaaattt cgagaatttc ctcttagagg gtattagcgg
      301 atacaacgct tcaggcgttc caaatattct ttttgtgatt tttcaaatga tgtttgcact
      361 tattgcatct gccatcataa caggctcttt ggtgggaaga attaaactgg gtgttttggt
      421 gatatttcta cttttttgga gtactttagt ttatgatgtg ttagcacata tgatttggag
      481 cagtgaggga tttttgctta aaagaggaag tcttgatttt gctgggggcg gtgttgtgca
      541 tattagctct ggggttgctg gacttgtagg agctttgatg gtaggcgcta gaaaaagtga
      601 tgatgaggat aaaaacgcgc attctattcc ttatgctttc ttaggtgcga ttttgctttt
      661 tataggatgg ttaggtttta atgctggaag tgctggcgaa atgaatgatg ttgctatcaa
      721 tgcttttata gtaagtatta tatcagcagc ttgcggcttt ttatcttggg tggtacttga
      781 gtggctcatc tataaaaaac cgactatttt aggtggactt agtgggcttg tagcagggct
      841 tgtgggaatt actccagctt gcggttatgt agatatttat gcttctcttg ttatagggac
      901 tttgtcttct gtgttttgtt attttggttt aagttttatt aaatacaaac tcaaatggga
      961 tgattcttta gatgcctttt ctttacatgg aatcggaggt atttggggag gaattgccac
     1021 agggcttttt gcaagtgcta aagtaaatcc taatgtgatt gcccaaaatg cacttggcga
     1081 gggatttttt atcagcggaa gtttggaact tttaaaagag caaatttttg ctattgtgat
     1141 ttgtgtggtt ttgtcagctc ttataagctt tgttattttt aagattatct cttgttttac
     1201 agacttaaga gtaaaagaag aagtagagca aaaaggctta gatgtgagtt tgcacggaga
     1261 aaaagcttat actttagctt agttggctaa atttttacta aaaagtcctt gtaatcataa
     1321 acaaggactt caaaatcatt cttaattaaa atcaggcaaa tactttaaaa taaagtggat
     1381 aaattcatca ctatcatttg ggcaagtgat taaatcataa tcgcactttg ctaaatgttt
     1441 atactccata cctagctcaa aaatcgtttc agaacaatca atgcaaaaag aaatagggta
     1501 aatcagagct ttatcgttta aatttgccaa aacatcgctt gtatttggtt caagccattt
     1561 tacagggcct agtttagact gataagctaa aataaattca tcaaaatgat cttttagctt
     1621 ttcttttaaa atttctacat gatcatttac atgcttttca tataaatcac ctttatcaat
     1681 aatgctttgt ggtaaagaat gcgctgaaaa aatcaaaatt ttggcatcaa atttactttt
     1741 tttagccaaa atgtgcgaaa ctatcatctc gttataaagc tcatttttgt aaaaaatatc
     1801 tatagttttt acttttgctt gaattttttg ctttgaaatt tcattttgca gaacttctaa
     1861 agatgaagtt actgtggtgc aagaatggtg cggataaagt ggaaaaagaa tgatttcatc
     1921 acttgcattt aaagtgtatt tttgcaaaat ttctgtggca aaaggaggaa cataaagatt
     1981 tacaaaatca aatttaaatt catcttgttt taaattaagc ttgtcacaca ggctttgagt
     2041 aagttcgttt aaaggggatt ttccgcccat ttttttatag ttttcttgca tggctttaac
     2101 gcgagccttt gttatgatcc atgctacaaa ttttcttaaa aatcgatttt tgattcctaa
     2161 aatataagga tcattaaaca tattttttaa aaaaacttca caatcttgta aattcgtagc
     2221 tccgcccata tttaaaaata aaactaattt cacgcaaacc tttctaaaat ttcttgaact
     2281 ttgtaagcat cgctcgtgct ggctaaatga ttgggttgat tatcgataag ttttaacaaa
     2341 gcttcgtgtt ctgaaaaaag tggactttgt tgagtaagtt ctataaaatt tccatctttt
     2401 aataaagaaa agtcatttaa attggcttca taaaaatgat ttttagtaat aagatgaatt
     2461 tttcttagtt tttgtgtgct attccaactt tgatgtatgc tagcaataca tttttcaagc
     2521 tcacatagaa taatgctttc actttctctt gtttgatctt gggtgtattt tttaagcaaa
     2581 ttggtttttg ttatttcttg tttgcttaaa aaacaaagca aatcaagatc atgcacagcc
     2641 aaatcttgca aaatccctac atcgctgatt ctttgtgggt agggtgaaaa tctttgtatg
     2701 ttaatgctga taatttcttc attttcaagc tcttttttta gggctaaaac cgcaggatta
     2761 aatctttcgc aaaaacctac acctactttt atgctgtatt ctttagctaa atttgaaatt
     2821 tcgtctattt cttttaaatt tagagctaaa ggcttttcga ttaaaacgca tttgcattgt
     2881 ttaaaaactt tttttgctat tgttaaatgt gaatttgtag gtgttgctat gatgataata
     2941 tcatta
//
LOCUS       DARGEX010000131         2826 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.132, whole genome shotgun sequence.
ACCESSION   DARGEX010000131 DARGEX010000000
VERSION     DARGEX010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.132"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..486
                     /locus_tag="SF010_001651"
     CDS             <1..486
                     /locus_tag="SF010_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG8230539.1"
                     /translation="QNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPDVCPATLS
                     LVGKALKQINNPKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDEKTLQKIT
                     KQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEKGHFYKEISDLNPQEILRELRIFLNS
                     Q"
     gene            complement(493..1392)
                     /gene="cysM"
                     /locus_tag="SF010_001652"
     CDS             complement(493..1392)
                     /gene="cysM"
                     /locus_tag="SF010_001652"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG8230540.1"
                     /translation="MKVYEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(1519..1815)
                     /locus_tag="SF010_001653"
     CDS             complement(1519..1815)
                     /locus_tag="SF010_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG8230541.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(1917..>2826)
                     /gene="ciaB"
                     /locus_tag="SF010_001654"
     CDS             complement(1917..>2826)
                     /gene="ciaB"
                     /locus_tag="SF010_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8230542.1"
                     /translation="ESFEHVYKNIGLEDCELEKEVLSNIEKTQLYICTPMIFYGAELK
                     GLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMKISSEVFDKEFLDFGRNIL
                     FYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYKATTGGLINFFY
                     HEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIHLSLLFESEVLIFENNNLK
                     INFDLRYYEKFKELTLKNYHELAKHYALRLDAKEFLSRFCEIEDNIFLPIMPKCKEFV
                     KFYYDLYEKIGNEIDNSGEFERYKKK"
BASE COUNT          983 a          486 c          317 g         1040 t
ORIGIN      
        1 caaaattctt atgattttat cttaaaatca gacttaaaag aggaaaccac cctaaaagat
       61 tttaaaggag ataagcttat tatctatttt ggatatactt attgccctga tgtttgtccg
      121 gcaactctta gtttagtagg caaagcctta aagcaaatca ataatcctaa ggctcacctt
      181 ctttttattt ctttagatcc aaatagagat aataacttaa gcaatacaaa cgaatggtta
      241 cgatactttt acccaaaagc agatgcctta attgcaaaag atgaaaaaac tcttcaaaaa
      301 ataacaaaac aatataatgt tcaatatcaa aaaatagatc taaatgattc ttttatgggt
      361 tattctatag cacatagcaa tatgctttat cttattgatg aaaaaggtca tttttataaa
      421 gaaattagcg atttaaatcc acaagaaatt ttaagagaac ttagaatttt tctaaattct
      481 caataattat acttaagcaa aaagatcagt tgagaggtat ctttcagccg tatcgtttag
      541 catagttaaa attcttttat ctggaaattt ctttgctagc atacttgcgg caaatacatt
      601 tgctccactt gatataccta ccattaaacc acttttggca agttctttgg ctgtatttat
      661 agcatcttca ttacttactg tgatcacttc atctataact tctttattta aaatagcagg
      721 tataaaattc gcccctattc cttgtatttt atggcttccc gcttcacctt tgctaagcaa
      781 tggagaattt agaggctcga ctccaacaat atgcactttt tctaattttt cttttagtat
      841 ttccccaact ccactaatag taccgccagt tccaaaacca gctacaaaaa tatcaagttc
      901 attatccaaa tctcttaaaa tttctaaagc cgtattctta cgatgcgcat ttttatttga
      961 aatattttca aattgagaaa ccataaaaga atttggagta tttaataata tttcatttgc
     1021 tttatcaacc gctcctttca ttcctaaatt tgcaggagtt aattctaacc tagcgccaaa
     1081 gagtgttatc atttttcttc tttctaaact catagattcg ggcattacag caataaattt
     1141 aagtcccaaa tctgcacaaa tcatagccaa agaaattcca gtatttccac tagttgcttc
     1201 aactattgta gtatcttgat taattttttt actatctaaa gcatctttaa tcatttcaaa
     1261 agctgctcta tcttttatag aatgactagg atttaaaaat tcacatttag caaaaacatt
     1321 gataccaaat tttttcaaat gtataatagg agtatttcct ataagctcac ttactttttc
     1381 atatactttc ataattttaa tatccttttt tatttaataa tgatagtttt ataaaagttt
     1441 aaaaaaataa agtaaataaa agatataaaa tatctggatc aattaagaaa gaaggctaga
     1501 atttatctag ccgaagtttt attttttctt tttgccgctt gcttttgcaa cagcttcttt
     1561 aaggttttta cctaccttaa attttgcaac tcttgtagca ggaactttga ttgtttttcc
     1621 tgtgcttggt actctagctt ctctagcagc tctttcttga gttgaaaaag taccaaaacc
     1681 aataaaactg atgctatcac ctttagctaa aacatcagta atagtagaaa taactgcatc
     1741 agtagcagta gtagcgtctt tttttgttag cccagctgtt tgagcaacta atgaaataaa
     1801 atctgcttta gtcataaaag ctcctttgtt ttaattgaaa cgcctaattt tagcatattt
     1861 aaaaaacaat atcaagtaaa aaacagcttt ttttaagttt ttttcaaaaa actttattat
     1921 tttttcttat atctttcaaa ttctccacta ttatcaattt cattaccaat tttctcgtat
     1981 aaatcataat aaaatttaac aaattcttta cacttaggca taataggaag aaaaatatta
     2041 tcttcaattt cacaaaatct acttaaaaac tcttttgcat caagtcttaa agcatagtgt
     2101 tttgccaatt catgataatt ttttaaagtt agctctttaa atttttcata ataccttaaa
     2161 tcaaaattta tcttcaaatt attattttca aaaatcaata cttcgctttc aaaaagcaag
     2221 ctaagatgaa taagtccttc cgtataataa ggtctaactt catcaaccct ttgccaagaa
     2281 ataagtccaa tagctctttt tataagttca tgaaaaacag gcattatcaa gtcatcttgt
     2341 tcatgataaa agaaatttat aagtccacct gtagtagctt tatattcttc tatattttta
     2401 aaaaaaccac tctgattcat tgttttttcg gtatcattag caataaaaaa tatatgacca
     2461 aattcatggc ctatagttga tacttcataa acccttttcc aaattttttc ctgataaaat
     2521 aaaatatttc ttccaaaatc caaaaattct ttatcaaaaa cctcgctaga aattttcata
     2581 aaaggctttg ttttagcatt ttcatataca aaatttataa aggcaaatat ttttttgccc
     2641 gccttagaac ttacaaactc atcatttgga acgacttgag ctgagaataa acctttaagt
     2701 tcagcaccat aaaatatcat cggagtgcaa atataaagtt gagttttttc tatattagat
     2761 aaaacttctt tttctaattc acaatcttca agtcctatat ttttataaac atgttcaaaa
     2821 ctttcc
//
LOCUS       DARGEX010000132         2799 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.133, whole genome shotgun sequence.
ACCESSION   DARGEX010000132 DARGEX010000000
VERSION     DARGEX010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.133"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..734)
                     /gene="peb2"
                     /locus_tag="SF010_001655"
     CDS             complement(<1..734)
                     /gene="peb2"
                     /locus_tag="SF010_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG8230543.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTSAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKALEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEV"
     gene            complement(775..>2799)
                     /locus_tag="SF010_001656"
     CDS             complement(775..>2799)
                     /locus_tag="SF010_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG8230544.1"
                     /translation="LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKG
                     VAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIALK
                     QASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNYED
                     QSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDTNT
                     LQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRSSR
                     SILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGVSL
                     EEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKDIM
                     AFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLGLF
                     ADLEELARETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTLVN
                     LICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDIYK
                     YYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSLEE
                     ERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT          915 a          517 c          324 g         1043 t
ORIGIN      
        1 acttctttcc aagtatattt tttccacact ttttgagctt ccttactctt aataaaatct
       61 acaaattcta aagctttttt attttctaaa gctttttttg taggagcaat ttcagctgca
      121 cgataaatca ctgcattttt atctttgata aataaagctt tatcatcgcc taaagccttt
      181 gcccaatgag accaaatgat taaagcatca atatttggat tgttattcca ctcatctaca
      241 gcagctttgg aatttttagc ataaattttt atatttttac gtaattttac caaattttct
      301 ctttttgcac tttttaaagc catatcttca taaagtccaa cttgtcctgc accatcaacc
      361 accataacat ttataccatc ttttaaaatg tcttcaaaat ttttaatatt ttttggatta
      421 tttggacgca cgataatacc tgatggacgc acatttaaaa cgcttaaatt ttccaaactt
      481 aaacttggaa tttttttagc aaaatcatcc atcattgaag tattgcctga aaaaatcaaa
      541 tctgcatttt cttttgcttt atctatccaa gctgaagttg ggcctgcggt tacaatcacc
      601 ttttcttttg ttttttcttc aaattttaaa gcaagctctt ttagcacagg agcaggacca
      661 cctggaccat aaactaaaat ttcagcattt aaaaaacttg ctgctgctaa acttaaaatt
      721 aatatttttt tcataaaata aacctttctt tataataata taaaggaaat tttatcaatc
      781 tatagttaac tctcccttgc aaagccctgc ttctataaga aaacgagaag gagcaaaaga
      841 agtttttttg tttttatcat atttagcata gcttaaataa agtatatttt ttgccctagt
      901 tactgcaaca taaaaaagcc ttctttcttc ttctaagctt ccacccattc ccataagctt
      961 ttgattagga aagcgacctt gcgcaagatc aatcacaaaa acaagatcaa attccaagcc
     1021 cttacttgca tgtacgctaa gcaaattaac tcctttgcca ctactcattt cacttgcacc
     1081 taaagttaga aaattataat atttataaat atcgctataa ttttttgtaa gctcttttaa
     1141 gacattaaat tttgtttcta ttttttctaa attttcactc tttcttaata aatccacctg
     1201 ccctgcttta tttgtcgctc ttttggttgc aagttcttcg caaatttctc tataaaaaga
     1261 attttcgcaa attaaattga ctaaagtcaa agaatgtttt atttccatag ctttttttaa
     1321 aaaaagatag attttttcca aatttctagc gcacaaatca ttgatttttg aaagtcttaa
     1381 aataggatgt gcatcaaatt cactctcaaa tttaaaacga gtttctctag ctaattcttc
     1441 taaatctgca aaaagcccaa gttgataatt tcttttttga tgattttgca aatttacatt
     1501 tttatcagga tctaaaaaac cttttattaa atttccatgc cctaatttta aaagtgcgtc
     1561 aaaaatttct tttgctaaaa ctccacccac acctttggta tattgaacca aatgaataaa
     1621 agccatgata tctttaggat ttaccacaag cgcaagcatg gagctaaaag ctttaacttc
     1681 caaactttca aaaaaacttc cacttccctt tctcacactt gcaatgccct gctcccttaa
     1741 agctacttca accccatcag cacttgagtt gttgcgaaaa atcacggcaa tttcttccaa
     1801 acttactccg cttgtaagta tcattttggc tatattttga tactgatcaa ataattcttc
     1861 aaaagtaagc aaagatgggg ctttaaactc atcatttctt gtaacaataa gttcttttgg
     1921 atataatctt tcgttattta aaatcacttt attagccaaa gctaaaatac ttcttgatga
     1981 acggtagttt ttatttaaag aaaaaatttt tgcatcttta aaacgatctt taaacccacc
     2041 tatgatatta atatccgctc cattaaaagc ataaatactt tgatcataat cccctacgca
     2101 aaacaaactt ttactatgaa aagcctctat taaagaactt tgcaaagtat ttgtgtcttg
     2161 atattcatct actaaaattt catcaaattc atatttttct tcttttaaaa gatcttttag
     2221 attgataagc aagtcattaa aatccacata attaaaacgc tttttttcat tatcatattc
     2281 ttttaaaata tcttcataaa tttcagcata aatactttga tcttcatagt tttgacaaaa
     2341 ccaagtataa aaatcttgat tgtgtgcttt gttttgaaac aaagaataaa gatcgtataa
     2401 ataacttgat tgataaggtt ttatatcact taaatgccta aaagttcttt tttcatagac
     2461 acttttaagt agagttttta actcgcttgc ttgctttaag gctatatttt tatccgcatt
     2521 tctaagtaag gtataagccg tactatgaaa agttcctgca agtattttac tggtaatatt
     2581 tttatcaaaa aatttcccta aacgccctat catttctttg ctggctttat ttgtgaaagt
     2641 caaaagcatg attttttgag gtgccactcc cttgcttaaa agataagaaa ttcttgcaac
     2701 aatagtagaa gtttttcccg tgcctgcact tgcaataaca agattgtgtc caaaatcagc
     2761 agtagcggca agatattgtt cattatttaa ttttgaaag
//
LOCUS       DARGEX010000133         2700 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.134, whole genome shotgun sequence.
ACCESSION   DARGEX010000133 DARGEX010000000
VERSION     DARGEX010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.134"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..239
                     /locus_tag="SF010_001657"
     CDS             <1..239
                     /locus_tag="SF010_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230545.1"
                     /translation="NIRNEFNQQSGAAISNFKNQGTSTSNVVNNSAKDAIVEQDANRR
                     MGVNPSSYIIQDASKSGNELAKEAQGLFDAMSKK"
     gene            complement(507..788)
                     /locus_tag="SF010_001658"
     CDS             complement(507..788)
                     /locus_tag="SF010_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HEG8230546.1"
                     /translation="MAKYKIYYHKDFIKAYKKISDEERKITDEVIVKLSNDENLEPKY
                     KDHQLKGVLKDFRECHIKSNLLLIYQKHNNELELNILKLGSHSKLFKKY"
     gene            complement(775..1002)
                     /locus_tag="SF010_001659"
     CDS             complement(775..1002)
                     /locus_tag="SF010_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230547.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            1275..1415
                     /locus_tag="SF010_001660"
     CDS             1275..1415
                     /locus_tag="SF010_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230548.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            1422..1710
                     /locus_tag="SF010_001661"
                     /pseudo
     CDS             1422..1710
                     /locus_tag="SF010_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
     gene            1910..2053
                     /locus_tag="SF010_001662"
     CDS             1910..2053
                     /locus_tag="SF010_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230549.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
BASE COUNT          990 a          344 c          366 g         1000 t
ORIGIN      
        1 ataatataag aaatgaattt aaccaacaaa gtggggctgc tataagtaat ttcaaaaatc
       61 aaggaacaag tacttctaat gtggtcaata atagtgctaa agatgccata gtagaacaag
      121 atgctaacag gagaatggga gtaaatccta gctcttatat aatacaagat gcaagtaaat
      181 caggtaatga gcttgcaaaa gaagctcaag gtttatttga tgctatgagc aaaaaataag
      241 tctagctttt tagttaggct tagtgatctc gtatagcacc gaatatataa tcaaatttac
      301 gaggatcgct ttctatatat cccccaattt cacttgttcc cccatgcttt ttctcatcat
      361 agggaactat ttttatattt ttagcaagga ataacacaaa agcaaaacaa tagctgcaac
      421 tccgcaagaa agccaaagaa caagtatgag tttttcggtt gtagtcactt ttgctttttt
      481 cctacattta tccatcttta ttcctttcaa tattttttaa ataacttact atgactacct
      541 agttttaaaa tatttagctc taactcatta ttatgttttt gataaattaa taacaagtta
      601 gactttatat gacattctct aaaatctttt aatacacctt ttaattgatg atctttatat
      661 ttaggttcta aattctcatc attagaaagt tttacaataa cttcatcagt tattttacgc
      721 tcttcatcgc ttattttttt gtaagctttt ataaaatctt tatggtaata aattttatat
      781 tttgccattt tgataagctt tcacaaagtc ttgatgcgaa ttaaagctta atgcagtatt
      841 gacttttttt tctttatcaa gttctttgct tgcatttaat atcttacttt caaaactact
      901 caacttaggc ttagaaattt tacatttggc atttatgctt tttgctaaac ccttgaatgc
      961 aggtaaaaaa ttttcattaa cattttcaat aataagagtc ataagcaact cctttctcaa
     1021 tttatataac ataattatac cattttttaa taatttttgc aagtattttt gttacagaat
     1081 gcctattttt taggggtttg aaacggattt tttttgactt gattgtttta tttattgctt
     1141 aatgaaaatt aatttgggta taattagcaa attaattttt ttagcttcat attgatttgc
     1201 taatcaaata taaatgttaa aatagtctat acagtattta ggatattaat tgaaagaata
     1261 aagagggtag taaaatgaaa accacagaat ataatacgca acaaaaaaat aataaagaat
     1321 atttagctga gagagaagca gttaaaaaaa actatggcaa aaatggaaaa agagttagaa
     1381 aaacctgcta taaatgcggt gtttcaaaga cttaaaaata aatgaaatat atagaactaa
     1441 gcgaagctat tgctatacac gaaaagatta ttgaaaaaac aggcggatta agtggttata
     1501 atgaaacaca aagtaggata tttggctagt gcattagagt atataaaaaa cgatgattat
     1561 tatcctacaa taactgataa aattacacat ttaatatttt cctgtgtaaa atttcatcca
     1621 tttgctgatg gaaataaacg gacttcgata tttctaggta tgcacttttt agatttagat
     1681 aagattttac caaagaatat gaattcatag gtagtcctac tttagatgat atagtaaaac
     1741 acaaacaaag tgatgaagtt tttaaagtgt tttataaaaa agatgataaa ataagattgc
     1801 ttagagttag taatatgcaa gctttaaatc gttttgataa acttaaaggt gcaatgacaa
     1861 aaataatttt agatagtggt tttaaacctg ataaataaaa aggattaata tgtgtaaaga
     1921 tcaagaatat atagagcaaa gaaaggtttt atgggaaaaa agttttgaag cctttaaaga
     1981 tgataaagtg tatcaaaaag aacagcttga acttgcagaa gcaggaatta atgatggctt
     2041 agaggaggat taattatata attagccata tattttatat tagttttttt aaaaaaccgt
     2101 ttttactata ttctttaatc ttttgtattg tattttgatt gtcttattta tgtaatttta
     2161 tatataaaaa aagttttttc caattttaca acaaaatcct ttatggtata ataaaaataa
     2221 aaattatata agaaaggata caaatggcta taaaaattga aattagcgga tttgataagg
     2281 attttttacc tgtttttgag agtttagcta aaagcttatc tcaaaagcct attttatcaa
     2341 tgttttttct tattttttga gcaaaaactt acgcataccc ttttttcatt ttttgtttct
     2401 ttaacttctc aaaaaaattt gtgcctcatt aaaacttgga aatacattat tttttcttcc
     2461 tgtgcaactt ttaaaacgca catttccgta aactctctca accatatatt cctcaaatag
     2521 agtggtaata atttctatgc tataatagcg aatgtttcct ttctcagtta ttctgtgcaa
     2581 caaaacatta ttcataaaaa acctaattaa aaattattta ttttattcaa aaaatcattt
     2641 ttaaacattt tttctatagc aagcttaatc atttgattaa ttttctcatt ttctttagct
//
LOCUS       DARGEX010000134         2660 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.135, whole genome shotgun sequence.
ACCESSION   DARGEX010000134 DARGEX010000000
VERSION     DARGEX010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.135"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..547)
                     /locus_tag="SF010_001663"
     CDS             complement(<1..547)
                     /locus_tag="SF010_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG8230550.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIAT"
     gene            complement(547..2355)
                     /gene="typA"
                     /locus_tag="SF010_001664"
     CDS             complement(547..2355)
                     /gene="typA"
                     /locus_tag="SF010_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG8230551.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2490..>2660
                     /locus_tag="SF010_001665"
     CDS             2490..>2660
                     /locus_tag="SF010_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230552.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDENEKMA
                     RISSELTEILENE"
BASE COUNT          827 a          505 c          395 g          933 t
ORIGIN      
        1 aagtagcaat aagataatga ttttctttag aaaaaacatg atttaaagtg aaatttttat
       61 cttgaagttt gatataaatt tgctcttcat tttcaaagct aggatttttg tttgcactta
      121 aaatttcgag caaaattccg caaaaaaagc gtttattttc gtccaaaaac tgaatatcat
      181 aaattttaaa atccttaaat tcaaagcagt tttgactttt aaattctttc aaatcctttg
      241 taagtcctaa ttttaaaaag tctttttggc ttaaactttg ctttttaaat tttgccccaa
      301 aacgacgtaa aaataaattt aaagcattaa tttgtaattc tttttgtgcg agttttagtt
      361 ttttggctgt aaaacgaaag aaaaaaacac ctacaaaaac agctaaaatt actgcgatta
      421 aggcatctct tataaaaaca aaggctaaaa aacctacaag taaggcttcg ataatgctta
      481 ggaattttaa gattcctaag cgtttaagta tataaagtct attattttct aagcttttta
      541 aatccattaa gattttgctt tttccattct ttttctttga gttgggtcaa gatagcgttt
      601 gcgaacacgc acatttacag gtgtaacttc tacaagttca tcttcttcta tccactctaa
      661 agctctttca agacttaatt ttctaggtgg cacaagtttg attgcatcat cgcttccact
      721 tgctcttaca ttggtaagat tctttccttt gataggatta acatctaaat catttggacg
      781 agagtgctca cctataatca taccggtata aactttagtt tgaggctcta tgaaaagtac
      841 tccacgctct tgaaggttaa acaaagaata ccctaaagcc acgccatttt ccatagaaat
      901 taacgctcca ttattacgct tttcaaccgc accgctaaaa ggacggaatt ctaaaaagct
      961 atgattcatc acgccttcgc ctttggtatc agttaaaaac tgacttctaa aacctataag
     1021 tccgcgtgct ggaatttcaa actcaagcct tgtttgtcca tcgcccgttg gtgccatggt
     1081 tttcatttca gcttttcttt tgccaagttt ttctattacc gcaccgctaa attcttcagg
     1141 cacatcgata actaaatgtt caaaaggttc tgttttaact ccatcttcaa cctttacgat
     1201 aacttcaggt cttcccatac aaaactcaaa accttcacga cgcatatttt cagctaaaat
     1261 agtgatttga agttcgcccc taccgcttac tttaaatttg ccttcgcctg tgctttcgta
     1321 tttcatagcg atattagttt tcatttcagc ttctaagcgt tcagcgattt tatttgaagt
     1381 tacatgtttt ccttcagttc ctgctaatgg gccatcattt acagaaaata ctatacttaa
     1441 agtcggctct tcaatgtgca aaggatcaag tggcatagga ttgtttggat ctacaacgct
     1501 atcacccaca tctaaagctt caaaacctgc tatagctacg atatctccac ttcctgcttc
     1561 ttcaatatcc attttttcta agcccataaa gccaatgagt tttgaaattc taccatttac
     1621 tttggtgcca tcagcttttg caagcattac gctttggttt ttcttcacaa ccccattgaa
     1681 aattctagca atgcctattt tacctacaaa attatcatac cctaaagtga aaacttgaag
     1741 ttgtaaagga ttgtcatttg tgccacttgg tgctggaacg cgttcaagta tggttttaaa
     1801 aagtggctcc atattatcac tttcatcgtt tagatcaagc ttagcataac cattttttgc
     1861 tgcagcataa actatggcaa agtcaagttg ctcatcgttt gcatctaggg ctacaaaaag
     1921 atcaaaaatt tcattgatca ctctttcagg atcagcagct ggtttgtcga ttttgttgat
     1981 tacaactata ggtttaagcc ctaaagataa agctttttta accacgaatt tagtttgtgg
     2041 cataacgcct tcttgagcat ccaccaaaag caaaactcca tcaatcattt ttaaaacgcg
     2101 ttctacttct ccgccaaaat cagcatgccc tggagtatct atgatgttga tttttgtacc
     2161 tttgtaattg atcgctgtgt tttttgaaag tatggtaatg ccacgttctt tttctatatc
     2221 gttgctatcc ataacgcgtt ctgaaatttg ttctctttcg ctaaaggtgc ctgattgttt
     2281 taataattca tctaccatag tggttttacc atggtcaacg tgagctataa ctgctatatt
     2341 tctaatgttt tccaaatttt cttctccaaa gctaaatttt taaaagctta gattatacaa
     2401 aaatttaact taaactacaa agcatcaaaa cttggaacac ttcttgcttt aaagacttgt
     2461 gaaattaaaa ttttaaaaag gaagttaaaa tgtcaaaacc attaaatgaa gagattttta
     2521 ttgaatttaa aagcgattta gctgagagaa aaaatgaagt tttgcttcaa gttttagagc
     2581 ttttagaaac ttttagatca gatgaaaacg aaaaaatggc aagaatttca agtgagctta
     2641 cagaaatttt agaaaatgaa
//
LOCUS       DARGEX010000135         2646 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.136, whole genome shotgun sequence.
ACCESSION   DARGEX010000135 DARGEX010000000
VERSION     DARGEX010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.136"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..560
                     /locus_tag="SF010_001666"
     CDS             <1..560
                     /locus_tag="SF010_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8230553.1"
                     /translation="KENKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIK
                     KIKPRKEKPIAKPKKIIPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKE
                     IKSAIDEALIYPRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETI
                     RIASKKFPQYEKTFHIKIPLVYKLS"
     gene            complement(652..1474)
                     /locus_tag="SF010_001667"
                     /pseudo
     CDS             complement(652..1474)
                     /locus_tag="SF010_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1903..1997)
                     /locus_tag="SF010_001668"
                     /pseudo
     CDS             complement(1903..1997)
                     /locus_tag="SF010_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          993 a          420 c          302 g          931 t
ORIGIN      
        1 ttaaagaaaa taaatttaat atggcaatca aacattttgt acaaaattcc tccgatatga
       61 aaccgacaca acctacacaa actatacaag agccttcgaa tgtgcaaccc aaagaacctg
      121 tgcaagaaat aaaaaaaata aaaccgagaa aagaaaaacc tatcgctaaa cctaaaaaaa
      181 taatccctcc agcaaatgca aaggcaataa gtcaacccaa aaaagataca aacatgcagc
      241 aacaaactcc acaagccagc tcttaccaaa gcgtatcttt aactagtaat agtgagcttt
      301 taaaagaaat aaaatcagca atcgatgaag ccctaatcta ccctagacaa gctagaaaaa
      361 tgcgtatgag tggggaggtt cttgtagaat ttacctggac aaaagaaaag aaattagaaa
      421 atttaaaaat acttaagcct tcaaaatatg attttctaaa taaaagtgct ttagaaacta
      481 tacgcatagc ttctaaaaaa tttccacaat atgaaaaaac ttttcatata aaaataccat
      541 tggtatataa attaagctaa atctttcaca atatactcta tttttaatac aaatcactcc
      601 agctttgcta acgcttagaa gtagaagctt cctagctaaa gctaactagt attagctaat
      661 tcgaaaggct ttgagtttat agtcctcaag gctaattcct aacccaaacg actttaatcc
      721 acgctttaag atattatttg cagcattaat atctctatgt aaagtattgc cacatttttc
      781 acaaagatac actctatctt taaacataag attttttttg atatttccac atacactaca
      841 agttttgctt gtatattgtg gattgacttt tataaagaat ttgccattat gctttgcttt
      901 atactctaga tattgagaga attgatagaa tgaagtatta agaatagatt tatttaaacc
      961 acttttagct tttatattct ttaatttagc tcttttacac atattcttaa tttgcaaatc
     1021 ttcaactgct agcaagtcaa attcttgtat gagttttgaa gttatcttgt gataactatc
     1081 ctttttgata tttgaacttt tttcatagat tttatttaat tttaattgtg tttttttgaa
     1141 attatggctt aactttgttt tctccttttt tgtttttaat attctcctgc tttgttttct
     1201 ttgcaatctt ttaatattca gctctactaa gtagctttaa gttagtagct attaactctc
     1261 cactgcttaa ggtaatctca ttgatattta aatcaatgtc aactgttttt ttaatatcaa
     1321 aatctttgct agatattaaa gaaacatttg attcatcata aatgatacta aaagctaaat
     1381 agtatttatt gtgatttttg ataatagtga tttgattaaa cttataagta tttggtaaat
     1441 ctctgtgata acgcatttta aaaaatgtat tcataagtct aaatatctta aacttagtag
     1501 tatcactatc tttgattttg taggcttgat tattccaatt aaagctttgc tttgcaaatt
     1561 tagagttttt aaatttggga aagccttttt tttatctcta attgcttgct ctaaggcacg
     1621 agaagattaa tccttgcttg ttgggttaca acacttttat agcttaattc tcttgctttt
     1681 ataaggctag ttttattgat tatctatctt acttgccttt aaataactcc tatctttttt
     1741 atctaaattc ttatttttat cccactgctc ttgctgtaaa tttaaacaaa tattataggc
     1801 ttgatataga tgaaacattg atgattaata agcttttgtt gttctttgtt taggtagaat
     1861 tctatattta aaacctttgg ttatttgcat tgctttgttc cattagggct ttttttcttt
     1921 ttggttatat attttttctt agggtaatta tcttctatgc cttgattttc tgcatatttt
     1981 ttaagagttt ctagcattat tccgcatagg tattctataa aaatactgat tatgtcaaat
     2041 acctaactag agccgtacaa ctaacactgt aagcaattca tctcccactt aagaagtgag
     2101 agttttattg aataaaaaaa gataaattta aagcaagtaa tcttttttta gacaacacta
     2161 aacccttgca tgtatttaca gtaatattta tttcatcata aacaaccccc aacccataaa
     2221 cctcaataaa cactataaaa taaacttgag tgattaaaaa tccaacccaa ttattgaaca
     2281 aacccaacct acataataaa atataaacta gacatataaa gaacaattga cacataaaaa
     2341 tagattgaat aaataaacct atacaagtaa acataaagat taattattga tacaaaagat
     2401 tcaataaata aaaagaataa ttgagatata aaaacatata aactaaacaa ctcaaacaac
     2461 cattaaatta acccaagcca atcaacaacc atagctaagc tgacaacaca acaaatcaat
     2521 ttaaatataa aactacaaat taaatcaacc caagctaatt aaacctataa acataaaaaa
     2581 ataattaaat ataaaaacaa cgattgacat ataaaaacta agattttaaa tctataagaa
     2641 taagat
//
LOCUS       DARGEX010000136         2622 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.137, whole genome shotgun sequence.
ACCESSION   DARGEX010000136 DARGEX010000000
VERSION     DARGEX010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.137"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..891)
                     /locus_tag="SF010_001669"
                     /pseudo
     CDS             complement(1..891)
                     /locus_tag="SF010_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            952..2460
                     /locus_tag="SF010_001670"
     CDS             952..2460
                     /locus_tag="SF010_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8230554.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKKRKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNVLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKSKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEIDLKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            2453..>2622
                     /locus_tag="SF010_001671"
     CDS             2453..>2622
                     /locus_tag="SF010_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8230555.1"
                     /translation="MFKKAFYKGFKLSNYYDNFGTIEEKILKQEFILQKYKNNNFFFF
                     NRVDNLLYYFIN"
BASE COUNT          964 a          375 c          357 g          926 t
ORIGIN      
        1 tatttttttg actttgtaaa attaaatgat ctttatttaa caatgttcta ataaaataat
       61 tttcattatt aaaaaaataa ggtgaatttt ctttacgcgt ccagtgggtt tttagaaaac
      121 aactcacaaa aaaatgatcg ccctgcatat acatatcccc attagtatct ttgcttttaa
      181 attccaactc tctaccaata atataattaa gcggtggaac agccgaaccc gaattatcaa
      241 tcacaccatc cacataccaa ggagctatct ttgctatgag caaggctaag tatcctccat
      301 aagacccccc cccataaatt tttggtaaat ctgcaagttt tggaaagcgt ttaactagat
      361 cttttaaagc attgatatga tcaatagctg ccataatgcc aaaattttga tattctccac
      421 gcgaaggaat aaaagttgca cttagtcttt cttcaaaatc ataaggcaat cgatttaaca
      481 tttttattct gtcataatct cgctcaaata ttcacaatga ctaactacag tattattggc
      541 taattgatca catggaatat tgtatttacg aagcactttt tctattaatt ttaaatcatc
      601 ttttgtaaaa tctgctaatg ttgaatactt ttcaacatcc gaacgccttt gacaaaaaca
      661 atgataaaaa acatgcactg ctacaacatc aaaattttta gcaatataat ttctataaga
      721 gtctaaaaaa tatatatttg cattggctcc ataacctcct attataaaaa ctatagcttt
      781 aatctctttt tcatcatcat aacttatacg gtattcaagt ttgctagttc tttttatatt
      841 taattctaca tcatcacaag aatcaatttc aaagctttgg tttatgagta tataaaggcc
      901 ttttttatta atttatcgat attatattac aaaaaattaa aaaggtaaat catgacaact
      961 catatctatg attttttaga aaaaagttta atcaaattta gcgaaaaaac tgcttttgta
     1021 gaaccctttg ccaaaaaaag aaaggaaatc acttacaaag actttgatct cttttctaaa
     1081 aaactagcca gtgaaatttt aaaaacttta ggaaatgata atcctactca agctcctgtt
     1141 ttaatcatct tgcctaaagg gattgattgt ttgatttcat tttttggagt agcactcagt
     1201 ggaaattttt atacactttt agatgaaaaa agtcctaaag aaagagtaga aaaagttata
     1261 gaagttttaa aacctaaact ttttatcact tcaaaggatt taaattttaa tttagatttg
     1321 cctacgcttt atacacaaga ctttgaaagt tttaatatag atgagagttt gctaaaaaat
     1381 gctaaagaaa aacatataga tactaattta ctctatgttt tctttacaag tgggagcaca
     1441 ggcattccta aaggagtaag catagcacat aagagtgtga ttgattatac tttttgggtg
     1501 tgtgagactt ttaaatttga tgagaatgaa attttagcca atcaagcacc attttatttt
     1561 gacaatagca ttttagatat tttttcaagt gtaaaatcag gagcaacttt acacctttta
     1621 cctaatcatc tttttgcctt tccaaataaa attttagaat gtcttgaaaa agaaaaagta
     1681 agcactatat tttgggtacc ttcggtgctg atttattttg caaatactga agctttgaat
     1741 aattttagtt taaacgtctt aaaaaagata cttttttgtg gtgaaatcat gcccaataaa
     1801 cagctaaata tttggcgtaa acacttaccc aatgctttat ttgccaacct ttatggtcca
     1861 acagaaatca ctgatgtatg ttctttttat atcatcaatc gtacttttaa agatgaagaa
     1921 cttttaccta taggcaaagc atgtaaaaac acagaacttt tagtttttga tgaaaatatg
     1981 aatttcataa gtcctaaaca aataggtgtt aaaggggagc tttttgtgcg tggaacttct
     2041 ttgtctttag ggtattataa tgacaaagaa aaaagcaaac aagcttttat tcaaaatcct
     2101 ttacatgata attatttaga tttactctat aaaacaggag atatcgtttc ttataatgaa
     2161 tttggagagc ttttatgcta cggaagagca gataatcaga taaaatatat gggacacaga
     2221 atagaacttg gagaaataga aagcgtgata aattcccatg cgaatattaa aaatagtgct
     2281 tgtattttta aagaagatat tatttgtttt tatgaaagtg aagaagagat tgatcttaaa
     2341 gcttttttaa aagataaatt accttcttat atgatcccaa aaaattttat taaactcgac
     2401 aaatttaagc ttaatcaaaa tggtaaaatt gatagaaagg ttttaaaaga acttgtttaa
     2461 aaaagctttt tataaaggat ttaagttaag taattactat gacaattttg gtacaattga
     2521 agaaaaaatt ttaaaacagg aatttatttt acaaaaatat aaaaacaata attttttctt
     2581 ttttaatcgt gtagataatt tactatatta ttttatcaat ga
//
LOCUS       DARGEX010000137         2620 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.138, whole genome shotgun sequence.
ACCESSION   DARGEX010000137 DARGEX010000000
VERSION     DARGEX010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.138"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..450
                     /locus_tag="SF010_001672"
     CDS             <1..450
                     /locus_tag="SF010_001672"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8230556.1"
                     /translation="RHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSFF
                     KAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQK
                     HDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            371..1924
                     /gene="rny"
                     /locus_tag="SF010_001673"
     CDS             371..1924
                     /gene="rny"
                     /locus_tag="SF010_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8230557.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQRHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1933..2490
                     /locus_tag="SF010_001674"
     CDS             1933..2490
                     /locus_tag="SF010_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8230558.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
     gene            2490..>2620
                     /locus_tag="SF010_001675"
     CDS             2490..>2620
                     /locus_tag="SF010_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8230559.1"
                     /translation="MSLWNSFSYSFKEFHYLFFSVVVIFIFNILLEYNNFLNFKNQK"
BASE COUNT          991 a          355 c          442 g          832 t
ORIGIN      
        1 cgccatattc ttaataaaaa ttacaaactt tttgttccat ttatgcaaga taaaagttta
       61 aaaattgtaa aattaagatt gccttttatt aaaaaaaggt ttggggtttt agagcctata
      121 gattcttttt ttaaagcaaa aattgattta gctattgtgc ctgtaattgg cgtcgataaa
      181 aatttaaaaa gaataggaca tgggcaaggt ttttatgata gattttttga aaatttaaat
      241 tacaaacctc atataatatt tgtccaaagt atagatgctt taagtcaaaa taatctaaca
      301 caaaagcatg atatttcagg aaaattatac ataaaccctt ataaaaaata ttacaagaaa
      361 gaaagaaaaa atgatagaat cacttatcgc acttatagcc gctatagtcg gactcggtat
      421 aggatattta gttgcaaaaa aaatcaatga tgccaaatat gaaattttcg tagaacaagc
      481 caaagctaaa gccaaagcta tagaatacga agcggagctt attttaaaag atgcaaaaaa
      541 ttcaattctt aatgcagaat tagaagttaa aaaaaaatac gaagaaaaaa ctcacaaaat
      601 tcaaaaagat tttaatcaaa aatttgatga tctttctaaa aaagaacaaa aacttcagca
      661 agaagaagaa aaactaaaag aagataaaga atacctttgc aagtcacaaa gacacattca
      721 aaacttacaa tctgatgttg ataaattaaa aaataaatat caagaaaaac ttgacgatgt
      781 tttaaaaatt ttagaacatt cgacaggact tacacaaaat gaagccaaag aaatcattct
      841 taaaaaagta gaagaaaatt ctcgcgagca aattgcacat atagtaagaa aatatgaaga
      901 agaagcaaaa aatgaagcta aaagaaaagc taatttcatc attgctcaag ctacttctcg
      961 ttttgcaggt gaatttgcag ctgaaagact tatcaatgtt attaacatta aaaacgatga
     1021 acttaaagga cgtatcattg gtaaagaagg gcgcaatgtt aaaaccttgg aaatggtttt
     1081 aggtgttgat attatcatcg atgatacacc aggtgctatt atagtaagtt gttttaatct
     1141 ttatcgccgt gctattgcta caaaagttat agaactttta gttgaagatg gcagaattca
     1201 acccgcgcgc atagaagaaa ttcacgaaaa agtgtgtaaa gaatttgata gtgccattct
     1261 agaagaaggc gaaaccatag ttatggatct aggtttaaat aaaatacacc ctgaaattgt
     1321 aaaactcata ggaaaactca aataccgagc aagctatgga caaaacgctt tagcacattc
     1381 tttggaagtg gctcaccttg caggaatcat tgctgctgag tgtggtggag atgagaattt
     1441 agcacgtcgt gcgggaattt tacatgatat aggaaaagca ttaacccatg attttgaagg
     1501 atctcatgtg gatttaggtg cagaactttg caaacgctac aaagagcatc ctgtagtaat
     1561 caatgctatt tacgcacatc atggacacga agaagctaca agcatagaat cagcagctgt
     1621 ttgtgcagca gatactttaa gtgctgcacg acctggagct agaagagaag tgttagaagc
     1681 tttcttaaaa agagtcagtg agctagaaga tatcgctaaa agtaaagaag gaattaaaaa
     1741 tgcctatgca atcaatgccg gaagagaaat tcgcgtcata gccaatgctc agcttgttaa
     1801 tgatgatgaa agtgtacttt tagctaagga aatagcagct gaaattcaag aaaaaatgca
     1861 atatcctggt gaaattaaag tcaatgttat acgtgaactt agagctgtag aatacgctaa
     1921 ataaggttta ttatgcaaga tatgattgat actttaataa aatatggtta tattgtttta
     1981 ttcttttact ctttaggagg tggaatggtt ggaattttag ctgcaggagt tttaagttct
     2041 caaggaaaaa tggatcttag tttttgcatt gctcttgctt ttattgctaa taccataggt
     2101 tcaactttgc tttttatact tggaaaatat tataaaaaag acattatgcc ttattttaaa
     2161 aaacaccgac gcaagatagc ccttgctatg ataaaaacaa aacaacatgg aattatttta
     2221 cttgtaactc aaaaatttat ttatggttta aaaactttta ttcccatagc tgcaggtatg
     2281 gcaaaatata attttattaa attttttatt atcaatactc tagctagttt ggcatgggct
     2341 attgttctag gttttgctgc ttatactttt gggtatgtta ttgaagcaat ttttgataaa
     2401 ctgagtttat atccttatgc tgctccttta tttttattat ttttagccgg aataatttgg
     2461 ctttatttaa gtaaattttc taaaaaataa tgtctctatg gaattctttt tcttactctt
     2521 ttaaagaatt tcattattta tttttctctg ttgttgttat ttttattttt aatatccttt
     2581 tagaatataa taatttttta aactttaaaa accaaaaaca
//
LOCUS       DARGEX010000138         2615 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.139, whole genome shotgun sequence.
ACCESSION   DARGEX010000138 DARGEX010000000
VERSION     DARGEX010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.139"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            56..>2615
                     /locus_tag="SF010_001676"
     CDS             56..>2615
                     /locus_tag="SF010_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8230560.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFSKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLNAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERINKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKSHLAKNYKVYKGTSDIYTYFYELGFN"
BASE COUNT         1035 a          384 c          393 g          803 t
ORIGIN      
        1 tttatataaa agtaaaattt gataaaatac aaaatatttt ttataaaggt taaaaatgca
       61 tttcactttg ctaaatgaaa aagatttttt caacccatac taccgcaaaa agcaaatcat
      121 gcaaaatgaa tttgatatat ttagcaaggc tttaatgcaa tatctagaaa gacttgaaag
      181 ttcgcaaagt gaaaatgaag attatcttgt agctaatgca cttagtccat ttttaaccat
      241 gttaaatttc aaaacccaca tcaaaaccaa gcaaaaaggc aaaagtgaga ttgacttatc
      301 catctctaaa gatgagttta gtaaagactt agaagttctt attgaggcta aaaagccaaa
      361 ttcaaaagaa tttatcactc atacaaaggt aaattctaaa gccttacacg agactatttt
      421 atattatttt agaaatagag agtatagttt tagcttaaaa tttattatca tcacagattt
      481 ttataaattt tacattttta aaattagtga gtttgaagag cttttttata aaaatccaag
      541 ttttaaaaaa ctttttgaag aattttgtaa tccaaattca cttttcaaag gcaatactga
      601 agaattctat aaagaagtag ccaaactcat agaaaattcc aaagaaaact taaaaggctt
      661 tttgattgac ttgacgtttt taaaagataa acagaaatca aattttaaaa acctagcaag
      721 tatttataaa acttttcata gagacttttt gctaagtgag tttaacccca acgatgcaaa
      781 ttcactcaac aacgcttttt acaaagagct tttatatatc ttagggcttt gtgagagcaa
      841 acaaaactca aaactcatca tcgcaaaaag tgaagaaagt aaagaagagc aaggcacttt
      901 ctacaccgct ataaactcta agcttaaaga agaaaatttt gaaaccatct taaaactttt
      961 gatcttatgg cttaatcgca ttttgttttt aaagcttata gagtcaaatt tggtgcgttt
     1021 taatgatgat aaaaatttga aatttttaaa tttcaaaaaa atccctgatt ttgacaagct
     1081 tagcgaactt ttctttgaag ttttagccaa agaaaaaagc acgagaaaga aaagcgaatt
     1141 tgcctatctg ccttatctaa attcttcttt gtttgaaaaa caaagcatag aaaacacact
     1201 tgaaatttca agcttaagca atgacttaaa gcttttttac tataaaaaca ctgtgctaaa
     1261 agatgataaa tgtaaagcta aaaaaggaca agtggggctt ttagaatact tgtttgaatt
     1321 tttggatagc tttgattttg gtagcgatga tgagcaaagc gaaattttaa gccaaaaaga
     1381 actcataagt tcaagtgttt taggaaatgt gtttgaaaaa ctcaatggct acaaagaagg
     1441 aagcttttac acgccaagct ttatcacttc ttatatgtgt aaagaaagta tcacaaaagt
     1501 tgtgcttgat aaattcaacg ctcaatttga tcttaatgct aaagatataa gcgaactaag
     1561 aaagtcttta agaaaagaag ataaaaaagc acaaaaagag cttttaaatt ccataaaaat
     1621 ttgcgatcct gcggtgggaa gcgggcattt tttggtttct gctttaaatg ttatgttaag
     1681 catttatgat gagctaaatc tttttgatga agaattttat ctagaagtgc aaaacgatga
     1741 aattctcatc acgggtagaa aaggcgagtt tatagagtat aaacgcccaa gtacgcctaa
     1801 agataaagcc catcttatcc agcaagaact ttttcacact aaaaaagaca tcatagaaaa
     1861 caaccttttt ggagtcgata tcaaccctaa ctcatgcgag atcaccaagc taaggctttg
     1921 gatagagctt ttaaaacata gtttttatca aagctttgat gatgagaatt atcacgatct
     1981 taaaacatta ccaaacatcg atataaacat aaaatgcgga aattctttag tatcttactt
     2041 tgaaacaggc aaaagcctaa accactatcc taacatcaaa gaacgcatta acaaatacaa
     2101 acgcatagta aaagactata aagaaggctt ttacacagat aaaagccata tcaaccaaga
     2161 gataaaaaat ctcaaaattt cttttaaaaa tttctgcttt gcagataaat ttaaaaaaga
     2221 aatgaaaagc tttaatgata aatgtgaaaa atactctaaa aaatacggaa atttcttagc
     2281 cgtagatgat gaaaatttga aattctttgt tagtgcgaat ttgactcttt ttgactttga
     2341 tgaaaaagaa gccacaaaag aatttgcaaa tcttaaaaaa gaatacgaca atatcttcaa
     2401 cctagaaagc aatcatcctt ttgaatggcg ttttgaattc cctgaaattt tggacgatga
     2461 tggaaatttc aaaggctttg atctcatcat cggcaatcca ccttatataa gacaagagga
     2521 gcttaaagaa ctcaagtccc atttagctaa aaattataag gtttataaag gcacgagcga
     2581 tatttatact tatttttatg aactaggatt taatg
//
LOCUS       DARGEX010000139         2589 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.140, whole genome shotgun sequence.
ACCESSION   DARGEX010000139 DARGEX010000000
VERSION     DARGEX010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.140"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            59..1993
                     /locus_tag="SF010_001677"
     CDS             59..1993
                     /locus_tag="SF010_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG8230561.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQILRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIHDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYKNRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDKILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLTNKAAAKLIDIGVFRNHLSADVRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            1986..>2589
                     /locus_tag="SF010_001678"
     CDS             1986..>2589
                     /locus_tag="SF010_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230562.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNTDNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSDLRVDEKTIEQYCYSLNTGSFES"
BASE COUNT          992 a          377 c          423 g          797 t
ORIGIN      
        1 catatttttt ttataaactt tatgtaagaa ttttacaaaa aatcataaag tatcaaaagt
       61 gaaagaattt ttaaacagtc ttagttatgg cattagctct cacgaagtaa acaatgaatt
      121 taaacaaatt ttaagagaac ttttaaccaa tcatatcatc aaagaacaca aaaacaaata
      181 ctatcttaac aatggttttg cctttggagt acttgatatt tcgagtaaag gcacaggttt
      241 tttacaatgc tttgatgaaa gtttcaaaaa agatcttttg atagaaaaca aaaacctaaa
      301 aggcgcaaac tataaagata tagtcgcagt aaaacttcta cctttaaaga aaaaacgccc
      361 cagtgcaaag gtgattttgg ttctaaaaag agccaatgaa acctctttag tgatcaccaa
      421 aaggtatggc gaagccgtgc ttggaatgaa tatcaaaaca ggattaagca ccaccttaaa
      481 agcttctcaa aaatccttaa aagcactacc tttagggaca attttaaaaa tagaaaatga
      541 aaataacaat atcatagaag ttttagggca tatccatgat gaaagcgtag atgaaaaaat
      601 ctccctagct ctttttaata aaaataacga atttagcgac gcttgtatca aagaagctct
      661 agcaaacggt gatagtgttg atgcgagtat gtataaaaat cgcatggatt taagagcctt
      721 gcctttttgc accatagatc ctatacatgc aaaagatttt gatgatgcga tttattttga
      781 cacccaaaaa cgagaaattt atgtagctat tgctgatgtt agcgaatatg tttatgctta
      841 tagcgctata gataaagaag caagaaatcg tggattttct atttattttc cacatattgc
      901 tatacctatg ttaccgcatc ctttaagtga aaatatctgt tctttaaaac ctcatttaga
      961 tcgcttagcg tattgtttta aaatcacact cgatcatgaa aataaagtca taaaagaaga
     1021 actttttgaa ggtattatca attcaaaacg ccgttttaat tatgatgaag ttgataaaat
     1081 tttgatacaa aaacctgatt taaaagagct ttcatggctt tatgagcttt ttgaaatcac
     1141 aaaaaattta cgcaaaatgc gtcttaaaaa tgcctttgaa tttcgcaccg aagaattaag
     1201 aatgaattta gatgaaaatt taagtctaaa aagtacagtt tttgaaaaag acacgccttc
     1261 gcataatttg atcgaagatt gtatgctttt aaccaataaa gccgcagcaa aactcataga
     1321 tataggtgtt tttagaaatc acttaagtgc tgatgtaaga aaaatcgata agcttttaaa
     1381 tgaattacgc gaactaggca tcgatgtaaa ttttaagccc aatcttcctg agctcatacg
     1441 cgacatacaa gctttagccg atgaattaaa tttaagagca gaagtagata aactcatcat
     1501 caaagcacaa aaaaaagcgg aatattctag cgtcaatgcg ggacattttg gcttaggttt
     1561 tgataaatac tcacatttta caagccctat aagaaggtat tctgatctta ttttgcacag
     1621 acttttaaaa gccaagcaaa aaaacgatga aaaacttttt aattatctac ttttaaacat
     1681 agaaagcact tgtgagaatc ttagcacact tgaaagagag gcggataagg ttgcttttga
     1741 ttttatggat agaaaatttg ctagatgggc agctaaaaat ataggcaaaa aatttaaagc
     1801 tttagttgtc caaaatgatg gagtttgcat agccaaacta gatgatgaaa tcaaaggagc
     1861 ggatataatc ctttatgata cgcgtgtaaa tttgctagaa aatgttgaag tacaaatcat
     1921 ggaagcggat atagttatgg caaaaattta tgctaaaatc acccaaagac ttataaagga
     1981 agaaaatgta tagaaaagag cttcaaatct tactttctaa agattcaata cctaattttt
     2041 tctttcttta tggagcagat aattttcaaa gcgaacttta tgctgaattt ataaaagaaa
     2101 aatataagcc cgatgaaact ttaaaacttt tttttgaaga atacaacttc actcgtgcga
     2161 gtgatttttt aagcgcagga tcgcttttta gtgaaaaaaa attactagaa atcaaaactt
     2221 ctaaaaaaat tccaacaaaa gatcttaaag ttttagtaga tctttgtaaa aacaatacgg
     2281 acaatttctt tcttttagag ctttatgatg aaagttctaa acaaagcgat atagaaaaaa
     2341 ttttctctcc tcattttgta agatttttta aagctaacgg agctaaagaa ggcgtggagc
     2401 ttttaagtat aaaagcaaaa caactagggg ttgaaatcac tcaaaatgct ttatttactc
     2461 tttttacaag ttttgatgaa aacttatatc ttgctgcgag tgagcttaat aaatttagtg
     2521 atttaagagt agatgaaaaa accatagaac aatactgcta tagtttgaat acaggaagtt
     2581 ttgaaagct
//
LOCUS       DARGEX010000140         2565 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.141, whole genome shotgun sequence.
ACCESSION   DARGEX010000140 DARGEX010000000
VERSION     DARGEX010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.141"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            82..>2565
                     /locus_tag="SF010_001679"
     CDS             82..>2565
                     /locus_tag="SF010_001679"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG8230563.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNIPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEH"
BASE COUNT          910 a          404 c          527 g          724 t
ORIGIN      
        1 aggcatttta taataaactt taaacatttt ttatccttca aagagctaca attataataa
       61 aaaatattta aggagtagaa aatgtctttt atgcaagaat acaataaact tgttgaagaa
      121 agagccgctt tgggtatacc accccttcct ttaaatgcaa atcaaactag agaactttgt
      181 aaattacttg aaaatgaaaa taatgaagag cttgcaaatc ttttagaaaa tagagtaaat
      241 cctggtgttg atgatgcagc tttagtaaaa tgtgaatttt tagattccat acttaaaggc
      301 aaaatcagtg ctccaaatat agacaaaaaa agagccttaa gaatgcttgg aactatgcta
      361 ggcggatata atgttaaagt tttaatcgat gccttaaaag atgaaaacat agccaaagat
      421 gctgcagaag tgttgaaaaa tattattttt gtacatgata atttccatac catagctgaa
      481 cttagtaaaa acaatccaca cgctaaggaa gttttacaaa gctgggcaaa tgcggactgg
      541 tttaataaaa aagaaaaact accacaagtg attaaatgta tagtttttaa agtagcaggc
      601 gaaacaaata ccgatgatct aagccctgca ggagatgctt ttacaagaag cgatattcct
      661 ttacatgcaa atgccatgct aaaggtaaga caaacaggat ccttagaaaa aatcaaagag
      721 cttaaaaaaa gcggtcgcga agtggtttat gtaggtgatg ttgtaggaac aggttcaagt
      781 agaaaatcgg caataaattc catacaatgg cacttaggaa aagaaataga aggtgtgcca
      841 aacaagcaca gcggtggtat agtaatgggt tcaaccatag caccgatttt ctttaacact
      901 gctcaagata gcggggcttt acctatcatc tgtgatgtaa caaacttaga aatgggcgat
      961 gagtttgaaa ttcatcctta tgatggaaaa atcataaaaa atggctctgc aatcgcagaa
     1021 tttacactca gtccaaacac tctcttagat gaagttagag caggaggaag aatcccactt
     1081 atcataggtc gtgggctttg tactaaggct agagaatttt taggaatgga aagcgaaaat
     1141 atctttacca aacctgaaca acctaaatct tcaagcggtg gttatacctt ggctcaaaaa
     1201 atgctaggtc gtgcctgtgg agttgaaggt gtgcgtccag gtatgtatat agaacctata
     1261 actttaaccg taggctctca agataccaca ggtcctatga ctagagatga aattaaagaa
     1321 cttgcaagcc taggttttaa tgcagacttt gttatgcaaa gcttttgcca tacagctgcg
     1381 tatccaaaag taagcgattc aaatttacat aaaaccttgc ccaatttcat gacaagtcgt
     1441 ggtggggtaa gtttaaaacc aggtgatgga gttatccact cttggcttaa tcgttttgta
     1501 ttaccagata ctgtaggaac aggcggagat tctcatacac gctttcctat aggaatttct
     1561 ttccctgcag gaagtggact tgtggctttt gctgcggtta ctggttctat gcctttaaat
     1621 atccctgaaa gtgttttagt gcgttttagc ggggaattac aagctggagt taccttaaga
     1681 gatttggtta atgctatacc ttattatgca atcaaacaag gacaacttac cgttgaaaag
     1741 aaaaataaga aaaatatttt tgcaggaaaa attttagaaa tagaaggctt gccaaactta
     1801 aaagtcgaac aagcttttga acttagtgat gcaagtgctg aaagatctgc agctgcttgc
     1861 agtgtggatt taagcataga aagtgtaagc gaatatatca aatccaatat ttctttaatt
     1921 gaagctatga tagaagcagg atatgagaat aaagctaccc ttgctagaag ggctgaaaaa
     1981 atgagagaat ggcttaaaaa ccctactctt ttaagagcag ataaagatgc aaaatacgct
     2041 tatattatag atattaatct taatgacatt aaagagccaa tcctagcttg tccaaatgac
     2101 cctgatgatg tggcaacctt aagcgaaatt ttagccgatg ataagcgtcc aaaaaatata
     2161 gatgaagttt ttgtaggttc ttgtatgaca aacataggac attatagagc tttgggagaa
     2221 attttaaaag ataaaggcat acttaaaacc agactttggg tagtgcctcc aacaaaaatg
     2281 gataaagcac aacttaccaa tgaaggttat tacagcatct ttggcgcagc aggtgctaga
     2341 atagaagttc ctggttgttc tttgtgtatg ggtaatcaag ctagagtaaa tgatggagct
     2401 gtagttttct caacttctac aagaaatttt gacaaccgta tgggaatggg tgctaaagta
     2461 tatttaggca gtgcagaact tgcggcagtt tgtgcgattt tgggtaaaat tccaagcaag
     2521 gaagaatact tacaaattgt tagcgaaaaa ctaagtgatg agcat
//
LOCUS       DARGEX010000141         2513 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.142, whole genome shotgun sequence.
ACCESSION   DARGEX010000141 DARGEX010000000
VERSION     DARGEX010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.142"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            380..945
                     /locus_tag="SF010_001680"
                     /pseudo
     CDS             380..945
                     /locus_tag="SF010_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            858..1313
                     /locus_tag="SF010_001681"
     CDS             858..1313
                     /locus_tag="SF010_001681"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
                     /protein_id="HEG8230564.1"
                     /translation="MNAVEVLCNYFNCTFEELKNKMQEYTFALKIGEDYLISPMKINP
                     NKTLFSYCDIESAQELSLLKKTNFIEAIKKDYEKFSLNKPKPLGAIFNDCILRRLHNK
                     EHLNQIHFNNFPIVGFSSFGEIYGAGIAKSLVAIFFMKLKILMISNLDI"
     gene            complement(1514..1867)
                     /gene="rplT"
                     /locus_tag="SF010_001682"
     CDS             complement(1514..1867)
                     /gene="rplT"
                     /locus_tag="SF010_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG8230565.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1961..2152)
                     /gene="rpmI"
                     /locus_tag="SF010_001683"
     CDS             complement(1961..2152)
                     /gene="rpmI"
                     /locus_tag="SF010_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG8230566.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2311..>2513
                     /locus_tag="SF010_001684"
     CDS             2311..>2513
                     /locus_tag="SF010_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230567.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGF"
BASE COUNT          940 a          362 c          335 g          876 t
ORIGIN      
        1 aataaatgcc gaatttatgg tgtcttgatt tagttaacta gtaattaaaa aatagtttta
       61 atggagttaa attgatgttt ttttaatttt aaaaataaaa gctcaacaaa aaaaagaaga
      121 agtaaaaaag ttttagaagc tccatatctt caataaaatg aacttgaaga aaaattaaaa
      181 aaataaacat caagccaaaa ttaattatag gctttgtgtc aatcaactta atctagcgat
      241 cataggaaat aagattcaaa attctataaa tgagcaatgt gatatcatct taagcagtgc
      301 tactgattta ttatgcaacc ttgattctaa ctcaaacatt gaaaacagtc cttataaaca
      361 aaatatccaa ggaataagct tgatactttt tagtgaagat atgatagaaa atctttgcac
      421 aaataaaatc aagcttttta gtgatataaa agattataca gaaagaaaaa aactgataga
      481 aaaagaagtt ttatttataa atataccttt tgaagcacac tgcataaata ctttgcatta
      541 tttaatttat gatggtttaa gtcaaagcga aagttctctt ttagaacttt tgtacaaaca
      601 caacccctat ccttgtgctt tagtaggggg tgggtctagc ggaaacatgg actttagcgg
      661 agcatttata ttttataacg gagaaatatt aaaaatcaag ctttaagcat acatgttcaa
      721 tttaaaccta aataccgttt taatttaatg aagtctcaaa atttcaatcc tcaaagcaac
      781 attaccttta ccatacttga tgtaagctta tatgataaaa ccgtacgcga atttattaat
      841 aaaaaacctt tcaatccatc aacgcggttg aagttttatg taattatttt aactgtactt
      901 ttgaagaact taaaaataaa atgcaagaat atacttttgc tttaaaaatt ggagaagact
      961 atcttatttc ccctatgaaa atcaacccaa ataaaacatt atttagttat tgtgatatag
     1021 aaagcgctca ggaattaagc ttgcttaaaa aaacaaattt tattgaagct ataaaaaaag
     1081 attatgaaaa attttctctt aataaaccaa aaccactagg agcaattttt aatgattgta
     1141 tcttaagaag acttcacaac aaagaacatt taaatcaaat ccattttaat aattttccca
     1201 tagttggttt ttctagtttt ggagaaattt atggagcggg aattgcaaaa agtttagtgg
     1261 caatattttt tatgaagttg aaaattttaa tgatttcaaa cctagatatt taaaaacttt
     1321 catacaaaaa tacagtgatt ttaaatacta ttatcttaat ataaaaggtc aaaaactaga
     1381 aatgacaaat gagattaata aaataatctt aaatcaactc aaatgttatg aagatgttct
     1441 agctaaatta aattaatact aaaaaattaa gaatttcaag aatcaaaaat cttgaaattc
     1501 ttacactaaa aaattaaagt gctttttttg cagcctctgc aatttttgca aaagcagcag
     1561 catcattcat agctaaatct gccagaattt ttctatcaag ttcaatacct gcttttttaa
     1621 gaccattgat aaatcttgaa taacttaaat cattgagtct gcaagcagca ttgatacgca
     1681 caatccaaag acggcggaag tctctttttt tacggcgtct atcacgataa gcatagacta
     1741 gacttctttc tagttgttct tttgcttttc taaaatgttt gcgtcgtcca ctataaaaac
     1801 cacgcgctaa ttttaaaact tttttatgtc tgcggcgtct aacaacacct gtttttactc
     1861 ttgccatttt tatttccttt cataaagtgg cgtccaaatt tggagcttgc ccttgaaatt
     1921 ttatctcaga ggggagtttg aatgactttt agtcaaaaac ttaaattcct agcatttttt
     1981 caacagcttt tacatttgtg ctatgcacat atttagctgt gcgaagatca cgcattcttt
     2041 ttgcaggttt tttagtcaaa atatgacttc taaaagctga gcctcttttg attttatttt
     2101 tacctacttt gaagcgttta actgcgcttt taacgctttt catctttggc atacgctttc
     2161 cttatttaga taaattttta tttttcaaac tttaaaagaa aagataaata ctatcaaatt
     2221 ttttctaatt tttgactgaa tttaattttt aaaaaacttg gcacgcattt tgcttataaa
     2281 aaaatcagca atattttgga aagatttaaa atgactataa attcggcaaa tccatatcaa
     2341 aatttaacct tatctaatcc tttgcagaat agctctgctc taaatttgat taaagatagc
     2401 aaagccttag atcaaaaagg aaatgaaaat agcttagaac aattaagtta tatttttaat
     2461 aatatcactt atgctagtga atttggattt agaatcaatg aagaaggttt ttt
//
LOCUS       DARGEX010000142         2513 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.143, whole genome shotgun sequence.
ACCESSION   DARGEX010000142 DARGEX010000000
VERSION     DARGEX010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.143"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1156)
                     /locus_tag="SF010_001685"
     CDS             complement(<1..1156)
                     /locus_tag="SF010_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG8230568.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQ"
     gene            1186..2307
                     /gene="tgt"
                     /locus_tag="SF010_001686"
     CDS             1186..2307
                     /gene="tgt"
                     /locus_tag="SF010_001686"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG8230569.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            2309..>2513
                     /locus_tag="SF010_001687"
     CDS             2309..>2513
                     /locus_tag="SF010_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8230570.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIK"
BASE COUNT          904 a          386 c          365 g          858 t
ORIGIN      
        1 tttgagaatt tggattataa taatataaaa taactccaaa atcaagctgt ttacttaaat
       61 cagtaatgac atttgcattg ttttcaagtt cactctcatc agcacttaaa ataatcgctt
      121 ctttaagctc atcaaaagaa gcttcaccca ctttcataat aggaattttt aaatcaaaaa
      181 aagcttgttt ttctttctca aaatttttta tatcagttac aactaatcct atatcattat
      241 tttgcaacca tgtggaaatt tgtttaaaat ccgtgttgaa ataatcaaaa aacacacctt
      301 ctttatcctc agaaagtttt tttaattttt catacattac ccctaattta ggattgataa
      361 catgtataaa aaatcttttt gcattgcttt tttgagttaa ttttaaagta gtatcaagca
      421 ctctttcttg catattttga ttcatatttt tcatatcaat taaagcaaaa acattacttc
      481 caaaaggcat aggaaattgc cctgctttgc ctcttatatt atgaaaaata ctttgtaaaa
      541 caacaggatc tccaacgatc aaaatgctat catttggctc taaaacaaaa gatggtttta
      601 caaaataaat tttagaattt ctataaataa ggactatgcg ccaccttttt tgttgtattg
      661 aacttatgtg cctataagca aaaatagacc ctgctggaat ttttacttcc ataatctccc
      721 caactccaag tcctatatac tgagctgtta aagcaatatc tggtaaaaaa tccataaatc
      781 tacggcttaa agtcattcta gcatcagcta aatttgcatg agtatcatta acacttaacc
      841 cccaaaaatc cattatttct atttctaaat ttggatttaa agaacgcaaa gcctcataac
      901 tttttttagt ttcaaattca tcttgcatat aaataaaagc ctgtttaaaa tccttactca
      961 taatattttc aagacgcgct gtgcttgtag gatcaaaata atgcaagtca atatactcac
     1021 tagaaatatt taagttattt ttttcactat tttgacacac tactgtaaaa aagtaaccta
     1081 agcctttttc aaaacaaagc ctttctaaga aatgctttgc taaaatacca tctattataa
     1141 ttaaaatatt attcatttta aactccaaaa aggaaattat aacaaatgga atttaaatta
     1201 aagcataaag atggaatggc aagggtttgt gaaatcacta ccgcacacag cactttttta
     1261 acccctgttt ttatgcctgt tggcacagta ggagcggtta aaagtcttga tgctaatgat
     1321 atgaaaaatg agcttgatgc aaaaattatt ttagcaaata cctatcacat gtacttgcgt
     1381 ccaacttcca aagtagtaaa agattttgga ggtttacatg gatttacgaa atttgataga
     1441 agttttttaa ccgatagtgg tggttttcaa gctttttctt taagtaaaaa ttccaaacat
     1501 tttaatgaag gtatagaatt taaaagtcac attgatggaa gtcgtcatct ttttactcca
     1561 aaaagtgttt tagataccca atatgatttt aactctgata ttatgatgat tttagatgat
     1621 ttagtagccc tacctgcaac caaagaaagg gttaaaattt ctgttgatcg cactatactt
     1681 tgggcaaaag aagctattgc ttatcataaa aatatgcaaa ataaaggtat aggtataggg
     1741 caaaatattt ttggtattat ccaaggtggc acagattatg aagaaagaaa gcgttgtgct
     1801 ttaagtttaa acgaaatgcc atttgatggt ttagctatag gtgggcttag cgtgggcgaa
     1861 gaaaacgcct tgatgtacga aacagtccaa aacttaaacc cttatctaga tgaaaatcgt
     1921 ccaagatatt taatgggcgt aggaacgcct gaagatttag tagaaaatgt tgagcgagga
     1981 gtagatatgt ttgactgtgt gatgccaact agaaatgcaa gaaatggaac atttttcaca
     2041 agttttggaa aatttaatat caaaaaagca gaatttatca acgatcatga agttatagat
     2101 tctacttgct catgttatac ttgtcgtaat ttttcaaggg gttatttaaa ccatcttttt
     2161 aaagctaaag aacttacttt ttttcgtttg gcaagtctgc acaatctaca ttattatctt
     2221 gaacttgcaa gaaagatgcg tgaagcaatt ttgaacaatt cttttacgca atttaaaaga
     2281 aatttttatc acttaagagg caaataaaat gctagagcta cacgaaaatc taaaaaaaat
     2341 cctgcaagca aagaatttag aaactttcta tagcgaaatt tatggacaaa aaatttttgt
     2401 ttacgtggga ttaaatttag aaacttggct ttttaatgat gaaaaaattt ataaacttca
     2461 aaatgaagaa tttaagcttt ctagcataga agaattttca aattttatta aat
//
LOCUS       DARGEX010000143         2416 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.144, whole genome shotgun sequence.
ACCESSION   DARGEX010000143 DARGEX010000000
VERSION     DARGEX010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.144"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            5..937
                     /gene="rsmH"
                     /locus_tag="SF010_001688"
     CDS             5..937
                     /gene="rsmH"
                     /locus_tag="SF010_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG8230571.1"
                     /translation="MEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHP
                     DLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISLKEELRGILADIGVS
                     SFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFI
                     AEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKDFL
                     GHLENLKPKNCILAIISFHSLEDRIVKKFFKKWSKNCICDEKIMRCECGNNHSLGQII
                     TKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            937..1875
                     /locus_tag="SF010_001689"
     CDS             937..1875
                     /locus_tag="SF010_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230572.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHAKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKELTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQKKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(1863..2354)
                     /locus_tag="SF010_001690"
     CDS             complement(1863..2354)
                     /locus_tag="SF010_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230573.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYIRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT         1047 a          331 c          319 g          719 t
ORIGIN      
        1 gattttggaa attcctcata tcccagtttt gcttaatgaa gttcaagaga tttttaaaaa
       61 tcttaaaaca ggttattttt tagactgcac tttaggattt ggcggacata gtgaagcttt
      121 gcttaaaaat catcctgatc ttaaattcat tgcttgtgat caagatcaac aagctttaga
      181 attttctaaa aaacgtctta aagattttcg caataggata acttttatgc aaagtaattt
      241 tagtgaagtt ttagaaaaaa tttcactaaa agaagaatta agaggtattt tagcagacat
      301 tggagtttct tcatttcagc ttgataataa cgaaagaggt tttagtgtaa attctgactt
      361 tttggatatg agaatgaatc aaaactccaa aatatcggct tatgagatta ttaatactta
      421 tacaaaagag caattaactt ccatttttaa agattatgga gaattacatg atgcacattt
      481 tattgctgaa aaaatttgcc tagaaagaag taaaaatcca atcaaaagtg ccaaagagct
      541 ttatcaaatc ataggaaaag gtaaacaaaa tcatagaaaa atttccaaag ctactttagc
      601 atttcaagcc attagaatag aagtaaatca agaacttaaa gtgcttaaag attttcttgg
      661 gcatttagaa aatttaaaac caaaaaattg cattttagca atcattagtt ttcattcttt
      721 agaagataga atagtaaaaa aatttttcaa aaaatggtca aaaaactgca tttgtgatga
      781 aaaaataatg cgttgcgaat gtggaaataa ccatagccta gggcaaataa taaccaaaaa
      841 agctataagt gcaagcaagg aagaactttt aaaaaattct cgctctagtt gtgctaaaat
      901 gcgggctttt tattttaata atttggacaa taaataatgc tagaagatga ttttataaaa
      961 gaacgccaaa acatacgcca aaaaatgctg aaattttctc gcgccataaa tcaaggcaaa
     1021 ccgcttgatg atgatttaag agatgaaatt tctagcgatg atattttaag acgtcgtttt
     1081 aaaaaaaaga ctcctaataa attcttagaa gaacttgatg aagagtatga gtcaaaacat
     1141 gctaaaaaat caaatatata tttaaaagaa gatctaatca atgttaaatt agaagaaaag
     1201 caatctcttg ctaaaaaaat tttttccaaa atgaaagaaa gaagaaaaga agaaaataaa
     1261 aaaactaaaa aaaatttttt atttagcaga aaaaaagcaa acgaaataaa aaatatccaa
     1321 accaaaacgc aaattcaaac aaaaagcaat caagctacca ctcaaacaaa acaagaaaaa
     1381 aaggaactta caaattctat agaaaaaatt caaaaaacag aaactaaaat acaaaaacct
     1441 ctaattatag aaaaaaaact agatgttaaa aatcaaccta atatcaagaa aagtttagaa
     1501 aatttacaaa aaaaaataac accacaagaa aataaacaag aacttccaaa accatctaat
     1561 caagctcaaa aaaaacaaca aaatgatgaa gatgctcaaa aggcaaaaaa tattttacta
     1621 gaaggcttct ctaatgctac caaagaagat agaaacctaa acttcaatca tcttcttttt
     1681 gcagctttac ttgttagttt tgcattattt ttatttgccc cacaaattta tattagaaat
     1741 caaatttatt atcttagtag agagattgct acattaagaa cagaagaaag tgttttaaac
     1801 gaggaaaata aagacttaaa aagaagactt gaaaatatgc gattccaaaa tcaaatttta
     1861 gattatttag aatgaataat cttatctaaa acatactgct ctaaatttgc ttttggaatt
     1921 tcttctttta aagcttcttt ataaaattca cccgccattg tagagtactt ttcataagca
     1981 aaataaggaa agtgtaaagc ccaggctttt tgtattattt tttttgagat tattttgcga
     2041 atataaactt taaaaatatc atatcctata aatacacaag cagtaaccat aacagcgctc
     2101 actatgctta tatgaaagtc aagctttgtt aaaaaataat gagtaatcaa aagcaatggc
     2161 aataaaatca cagcgcaaaa aacaccaaaa taaatataag aatttagaat tttgaaatta
     2221 aaatttagct tagaaggatc tacaagcatt ccatcgttaa aaagtgcatt tgcctctaat
     2281 aaatctctta taagaacagg ttgctctgat actttaaata aaaaacgaag gctaaattct
     2341 ttaaattttt tcataatcca cgctttattt tttaattaaa attttatcca aagaaaatta
     2401 attccaacta aaaaat
//
LOCUS       DARGEX010000144         2269 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.145, whole genome shotgun sequence.
ACCESSION   DARGEX010000144 DARGEX010000000
VERSION     DARGEX010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.145"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            91..1374
                     /locus_tag="SF010_001691"
     CDS             91..1374
                     /locus_tag="SF010_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230574.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFSDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIYYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYSFGNNGIFKFN
                     IYDYFAYDEIGVQPIQQSPYVSPRSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELS
                     YQKGVYIELLRPYYPSIKDLPEGWDNKMLEKANLK"
BASE COUNT          850 a          295 c          343 g          781 t
ORIGIN      
        1 aaccttataa atacagtata ttttcagata agcctgcaat ttattggttt tctccaagtg
       61 aaagagatgc gagaataagc acattttatt ttgaaaaata tagaggttga tatgttagaa
      121 gtagccataa agaatatatt taaacataaa gatttcttac aaaccagaaa agaaccttat
      181 gctatttatt tagccataaa tacaaacata aaaagttata ataatatttg tcctagcgag
      241 aaatattttt ggaaatttaa tgatatgaat gagcttgaat gctataatcc aaaatttggc
      301 atatatcttg gtaaaattgt ttttgataaa aaaggcaaca aactcatccc aaaatacata
      361 cccgctaaat ttgaaaattt agaagaagaa gttaaaaaga taaaaaatcc tttatggctt
      421 gctaataaaa atcctaatta tattaaacct aaattttatg atggtatggg tgggggttat
      481 tattttgaaa gtccaaataa tttagagtat caatgtaaaa tagaaaaaga cactcaaatt
      541 ttaagccaag aacaaatcat ttcctatgtg aaagaacttt atagtaaaaa cacaatgata
      601 ataaaaaatt atattgatgc aatcaataaa aaccatggca taaaaccttt cgtatttagt
      661 gatgaaattt atgatcaatt aggagaagtt ggcattctta caaaagaaca agctaataat
      721 tttaaagata aaagttatat taaaaaaaat ccaatattgc ttgctatgct tgattattta
      781 gcaaaacaaa ataaaaaaga tgaagattat ttaatcactt ttgatgatga gtatttttat
      841 gcttatttgg tttggagttt aaaagatttc ttattagagc tttcttatgg tttgtttcaa
      901 gatgaaacca agcttctttt taatcctgca gcttatatgg atgacacaaa aatatattat
      961 aaaaatttaa acgaagaaat aaataagcgt tatgaaaaaa tattgcttga tatgggattt
     1021 gaaggagaaa atggttattt taatgattat tatgattata gctttggcaa taatggtatt
     1081 tttaaattta acatatatga ttattttgct tatgatgaaa taggagtgca accaattcaa
     1141 caaagcccat atgtttctcc tagaagccct tttgatagcc ctaattttgt ctattctgat
     1201 ggaaattatc acggagatgc aaagcttatc ccttctgctt taggaaagta ttattttgag
     1261 ctttcctatc agaaaggagt ttatatagaa cttttacgcc cttattatcc aagtataaaa
     1321 gatttaccag aaggttggga caataaaatg ctagaaaaag ctaatttaaa ataaatatga
     1381 gcatccgtga ataaaccctt ctacaaactt aaaagatttt atataccttg tggtatgctt
     1441 atagctttga ttattttata agcttaactt atcatttttt acaacgacct ttagagctta
     1501 tcttttggga tagatatgat atatcgaaat tatctattaa taacgaagag aaaaatttta
     1561 aaacaatgaa aactgtgaat tactcctact ttcgctaacg cttagaagta ggagcttcct
     1621 aactaaagcc aagtattctt agctagctcg aaaggcttct tgtttatagc ttacacctaa
     1681 attttcatat aaaatattaa aacttataca aaaatctttc ataaattgtt tcagaagtta
     1741 aagagtttgt ttggtaaatt acattaaggg tttaagccgc aggctgaccc cctacggcta
     1801 aattgtgaaa cccctgaaag gaggtaaact caatgaggct cataaaactc attctagtgg
     1861 ttattatact gctttgttta tttatagtca aggcatatta accaagcgcc attttgggga
     1921 aactagagtg ggttacctgc ggtatcaaac aaacttttaa ccaagcttat ctcctttata
     1981 ttgaattatt ttatttttta atttatattt ttcttgctta tactaaaaga taagattcaa
     2041 ttataaacaa aatgtattaa gaagctaaag agtttgtttg gtataattat aaaaggtaga
     2101 tgccaaaggg ctgcaaccct ttagcgttaa tttaccgccc agaagggagg tgattaaatt
     2161 gctaaacaaa attatagtaa taattatact actttgtata attatagtca agtgttatta
     2221 atacttgatt tcccattttt taaaggggag ctataatttt ccctttggc
//
LOCUS       DARGEX010000145         2184 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.146, whole genome shotgun sequence.
ACCESSION   DARGEX010000145 DARGEX010000000
VERSION     DARGEX010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.146"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1089)
                     /locus_tag="SF010_001692"
     CDS             complement(<1..1089)
                     /locus_tag="SF010_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230575.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CKDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPY
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYTNTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILS
                     KQKDIDINFVNFIDYKDYVYKNKDDFWEF"
     gene            complement(1086..1418)
                     /locus_tag="SF010_001693"
     CDS             complement(1086..1418)
                     /locus_tag="SF010_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230576.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            complement(1596..>2184)
                     /locus_tag="SF010_001694"
     CDS             complement(1596..>2184)
                     /locus_tag="SF010_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8230577.1"
                     /translation="LMEEVEDDPCIYQNALIYDYILSADNPNSQIIKYLVNRGAKFEV
                     HDEDTNWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLRKCNNETLLFEAVSEPET
                     YRVTQLLIELGANVNFATPTTPLDDAKGSRNKKLLKDAGAMTSEQIRKKFNLPAYDSS
                     HCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
BASE COUNT          734 a          330 c          240 g          880 t
ORIGIN      
        1 aaactcccaa aaatcatctt tatttttata aacatagtct ttataatcta taaaatttac
       61 aaaattgata tctatatctt tttgtttaga aagtatgcct tgtatgtttt cttcttctgt
      121 gttttttgga attttgttgt aattaataag ataataatta agtctatctt tgtttaattc
      181 ttgattgtca agttcattta aaaactcttt agaataataa tttaaaaagt aagtatttgt
      241 gtattcttct atatattctt taaaacttct tttatgaatt aatttatctt gattaatggg
      301 ataagatttt aaagtattat ttttagaatc taaagtatga tcatatccta caaaaaaata
      361 agaaaaatcc ataaaagcat aatcagcact gatgccttta caaagattta aaaacatatt
      421 ttcaagttct aaaatgattt tatcttcttt gcttaaattt aattcttttt gtatctcatc
      481 ttgacttttt ggagtaaaag tatgattgat tctgtgatta taattgttaa ttaaatattc
      541 taagctttca tcactaaaat taaagcttag ctcaagtgaa gaattaaaat aaatatcata
      601 tttattaaag tagggtgcta aattatcttt ttctataaaa atatcaattt gattttgaga
      661 aaaattttct cctttttcat cccaaaaagg aaaattagga gaaagatttt taagcatacc
      721 aatctctgtc aaatcatttt tttgataata tcgatgtaaa atatatttac ttttatcctt
      781 acataaacga ttataaaatt gagtataatt tgaaggcaaa aaatcaagcc attcatcatc
      841 accatgtaga tttatgcctt caaattgatc aacactaaaa taagctttaa actcttgcat
      901 agcttttaag gtattttcta aatgcttatt ataaaatttg tctttattgg cttgtttaaa
      961 ttcaaaccaa tctttggcat ttaaacgctc gccttttaag ctccaagcat taagatattt
     1021 ttcatcacta aaagttttag tagaaaaaag ataaaagctt actcgattag agcttaatgt
     1081 ttgtttcatt taaaatcttt taaagcatat aaaaagtctt taatatcact tacttgatct
     1141 tctacccaat cttctactgt ataatcttca tcacaatcgc tatcttcatt ataataatct
     1201 cccccttcaa agtcagcagg atcgtcataa agttccattt ctatatgttc taattcaaat
     1261 tccaaatcat ttataaaatt tcgaagattt acgccattaa attcactttt atcatattct
     1321 aaaacagcaa taagattagg cggcaaggta actttatatt ttgcatcaac ttttaaattg
     1381 ccattttcta ctaaattttt atattcatag cttaaaatgc tacttataaa agctcttcgt
     1441 tcgtattttt ttaaaccata taaagcatct tttaaataat tatcattttt aagatagtat
     1501 ttaaacactt cttgtatata ttcatcatcc aataattttt tatttttcat tatctttcct
     1561 tataatttat tttagcaaag tgaatttcta ttccctcatt cactttcttt agcctttttt
     1621 atagcatcgt ttaaaagttt ggaatattca tcatgatatt tacctaataa atccatatca
     1681 gtttttccgt caatttcgca atgagaagaa tcatatgctg gtaaattaaa tttctttctg
     1741 atttgttctg aagtcattgc tcctgcatct tttaaaagct ttttatttct agatcctttt
     1801 gcatcatcta aaggggtggt tggggtagca aaattcacat tagctccaag ttcaattaaa
     1861 agctgtgtaa ccctataggt ttcaggttcg cttacagctt caaataaaag ggtttcattg
     1921 ttgcattttc ttaatttact aaaagtttgc atatctacat tagctcctcc tttaatagct
     1981 agttctaata attcataatt attgcgtcta gcccaaaaat gcataggggt ccaatttgta
     2041 tcttcatcat gcacttcaaa tttagcccca cgattgacta gatacttaat gatttgagaa
     2101 tttggattat cagcacttaa tatataatca tagattagag cgttttgata aatacaagga
     2161 tcatcttcta cttcttccat caag
//
LOCUS       DARGEX010000146         2087 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.147, whole genome shotgun sequence.
ACCESSION   DARGEX010000146 DARGEX010000000
VERSION     DARGEX010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.147"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..188)
                     /locus_tag="SF010_001695"
     CDS             complement(<1..188)
                     /locus_tag="SF010_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230578.1"
                     /translation="MLPQPIFLNKLIEFLSDENLDIVNMKKGVDKIFSKKDFYAILEL
                     NIKIMNIAKLIFKSDEQL"
     gene            complement(188..538)
                     /locus_tag="SF010_001696"
     CDS             complement(188..538)
                     /locus_tag="SF010_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEG8230579.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRA
                     MSLEELESLELKGW"
     gene            complement(623..1189)
                     /locus_tag="SF010_001697"
     CDS             complement(623..1189)
                     /locus_tag="SF010_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230580.1"
                     /translation="MKYYKMMYNYNHNDVDNWYSCDLVDIKNNDEYALLESKPITNWQ
                     TPSFEIDKDDGNILTDLIHNDCGWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVTKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
     gene            complement(1189..1539)
                     /locus_tag="SF010_001698"
     CDS             complement(1189..1539)
                     /locus_tag="SF010_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEG8230581.1"
                     /translation="MEYDRIRWEGMGDDNKQSSIQTHHIATDKNKKFTKEFRKITKKY
                     NMELDEDWNKVKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKN
                     NPAILHKDYYKERK"
BASE COUNT          662 a          336 c          225 g          864 t
ORIGIN      
        1 tttaattgtt catcactttt aaaaattaat ttcgctatat tcataatttt aatatttaat
       61 tctaatatag cgtaaaaatc ttttttagaa aaaattttat ctacaccttt tttcatattt
      121 acaatatcta aattttcatc agataaaaat tctataagtt tatttaaaaa tataggttga
      181 ggaagcatta ccacccttta agctctaagc tttcaagctc ttctaaactc attgctctaa
      241 ttaaaatcct ttcttctgat tgaattaaag aaaaatcttg caatttctct aaagcttctt
      301 tatactctaa ataccccaaa ggctcatctt tgctaatgct aaaaaaactc agcctccatt
      361 tggtttcttt atcttcatca tctagttcaa aattttccca aggtttttta aaaagaatag
      421 tatctgtatc ttcacttagg gtgaaattta ttattaaccc atctggtgtt tcataaagtt
      481 taggcatagc ttcataagct tcttcccaac gtctttgtaa aagttttaaa tcttccataa
      541 atttttcctt aaatataaaa tgaaattata actaaaaatc tttttatatt aaattgcaaa
      601 attttttata gcttttagtc tttcaatttt catataccat aacttcacta aaactaaaac
      661 ctaataaatt gttttctctt actatttttc taaattcact tgatacaaaa acaggtactt
      721 catcatcttt aattctaaat atatggcttc catcaagttt tgattttttt aaaacagctt
      781 tagtaatact taaatattca tcattatcac ccatataagt atatacagaa tgttcataat
      841 ctaaagcctc aagtgatttt gttacatgca taattttaca accataataa tttatttcct
      901 gacttttaat ttctacatct aaatattgca cacaatcttt gattaaatct tgcattaaat
      961 ttataaattt aggagagact atacgccaac cacagtcatt gtgtataaga tcagtcagta
     1021 tattaccatc atctttgtcg atttcaaaac taggtgtttg ccaatttgtg ataggtttgg
     1081 attctaaaag tgcatattca tcgttatttt ttatatctac aagatcacaa gagtaccaat
     1141 tatccacatc gttatgatta tagttataca tcattttata atatttcatt attttctctc
     1201 cttatagtaa tctttatgaa gtatagcagg attgtttttg acttcttctt ttagtttttc
     1261 aaattctttt atgaatttat ccttatctcc tcttgctatt ttatcaattt tactcatttt
     1321 ttcaagaata tattcatgat attcattagg atgtcttccg cgatgtggca ttttaacttt
     1381 attccagtct tcatccaatt ccatgttata tttttttgtt atttttcgaa attctttagt
     1441 aaatttttta ttcttatcag tggcaatatg atgggtttga attgatgatt gtttgttatc
     1501 atctcccatc ccttcccatc ttatcctatc atactcaatc ttagcaagag gactagcttg
     1561 tattttagct aaagcaaatt taatcttatt ctttttgggt atagcaaata taggataacc
     1621 ttttatactc attcctatca aacccatttg taatacagaa tgtttattat taactttatg
     1681 atctgaataa gtataagcaa ataccatagc tactttagta caaggtcctc ctagtatagg
     1741 tggatttaaa catccactta tactagctcc ttgtatttca ttatcaagca taataggaac
     1801 attgtctgat tttattcttt tagctttttt tgcttttaac ttaactctac ctccatgtaa
     1861 gcatactaaa gtattatctt ctaagatagg atgcatacaa gaagtatcag gacttatatt
     1921 aatatcttct attctaggaa taaggattgt tcttttttta gccatgaaaa gtcttgtggg
     1981 ttttaagtat gttttctagt tgttcatctt tagcataaag aagcttttct tctaaagagc
     2041 aatcaaaatt taaaggaaaa ggttttaggg tatttttact tagaaat
//
LOCUS       DARGEX010000147         2027 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.148, whole genome shotgun sequence.
ACCESSION   DARGEX010000147 DARGEX010000000
VERSION     DARGEX010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.148"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            17..1951
                     /locus_tag="SF010_001699"
     CDS             17..1951
                     /locus_tag="SF010_001699"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG8230582.1"
                     /translation="MIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLE
                     RYFNEITSELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLN
                     NLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPG
                     YKLLASAAFRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVE
                     FLNTHMKIFHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFD
                     AVEKEDILIIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASD
                     GKQVTVMVELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLK
                     FYMHLSTGNYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPN
                     QIKEKVLEMIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCL
                     KPDEEYSKNIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIY
                     DERSKAKLAQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTL
                     KKDTDQSRATHLASKLFKEN"
BASE COUNT          756 a          309 c          338 g          624 t
ORIGIN      
        1 tttagatgaa ttttatatga tacgcgtcgc aggcttaaaa caactttttt cagctggagt
       61 taatgcaagc agtagcgatg aaatgacacc gttgcaacaa ttaaaagcca tacgcaaata
      121 cttacaccaa gaaaaagagc ttttggagcg ttattttaat gaaatcacaa gtgaattaga
      181 aaaagaaaat cttttcataa aacattatga aaatttagat gaaaatttaa aacaaaaatg
      241 tgatgagtat tttttctcca atatttttcc tgttattgtt ccaatagctg ttgatgctac
      301 tcaccccttt ccgcatttaa acaacttatc tttttcacta gcggttaaaa tttgcgataa
      361 agcgcatcct gaacttgtaa aatttggaat gattagaatt ccgagagttt tacctcgttt
      421 ttatgaagta agtgcaaata tttatgttcc tatagaaagt atagtccatc aacacgcaga
      481 agaaattttt ccaggctata aactcttagc ttcagcagca tttagagtga ctagaaatgc
      541 agatatggta atagaagagg aagaagctga tgattttatg atgattttag aacaaggctt
      601 aaaacttcgc agaaaaggag cttttgtaag attgcaaatt caaaaagatg cagatgagca
      661 aatcgtagaa tttcttaata ctcacatgaa aatttttcat aaagatgttt atgaatattc
      721 tattttactc aatctcccta gcctttggca aatcgcagga aataaaacct ttacgcatct
      781 tttaagccca ctttacacgc ctaaaacttt accacctttt gatgaaaatt tatctatttt
      841 tgacgctgta gaaaaagaag atatactcat catacaacct tttgaaagtt ttgatccagt
      901 ttataaattt atcaaagaag caagcaaaga tcctgaagta atttccataa gaatgacact
      961 ttatagagtc gaaaaaaatt ccaatatagt tcaagcttta attgatgctg caagtgatgg
     1021 aaaacaagta actgtgatgg tagaattaaa agcacgcttt gatgaagaaa ataatcttca
     1081 ttgggcgaaa gctttagaaa atgccggagc tcatgttatt tatggcatta caggttttaa
     1141 agtccacgct aaggtttctc aagtcatacg caaacaagga gataaactta aattttatat
     1201 gcatttaagt acgggaaatt ataatgcaag cagtgctaaa atctatactg atgtgagtta
     1261 ttttacaagc aaagcagaat ttgcaagaga tacgacaagc ttttttcaca tcttatcggg
     1321 ctttagtaaa aatcgtcgcc ttcaaactct ttcaatgagc ccaaatcaaa tcaaagaaaa
     1381 agttttagaa atgatacgca ttgaaacaag caagaaaaat gaaggtgtca ttgtagctaa
     1441 aatgaattct cttgtggata gtgatatcat acaagcgctt tatgaagcaa gtatggaagg
     1501 agtgcaaatc gatcttatca tacgcggaat ttgttgctta aaacctgatg aagaatacag
     1561 caaaaacata cgcgttagaa gcatcatagg aaaatactta gaacatgcta gagtatttta
     1621 ttttaaacat agtgagccaa attattttat atcgagtgca gattggatgc caagaaattt
     1681 agaacgccgt ttagaactta tgactcctat atatgatgaa agaagcaaag ctaaattagc
     1741 tcaattttta cgcttgcaac ttagtgataa tgttttagct tataagctta aaaataatgg
     1801 agaatatgaa aaaattcctt cttctgaaaa aatcatagat tctcaacaaa ccttagaaga
     1861 atatgtaagt aaaatttata aaacacttaa aaaagataca gatcaaagtc gtgcaacgca
     1921 cttagcttcc aaacttttca aagaaaacta aaagttttta gggtttttta ctctaaagac
     1981 ttatttactt gtttgttata aaaaagggct ttaagataaa gccctag
//
LOCUS       DARGEX010000148         2013 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.149, whole genome shotgun sequence.
ACCESSION   DARGEX010000148 DARGEX010000000
VERSION     DARGEX010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.149"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1396
                     /locus_tag="SF010_001700"
     CDS             <1..1396
                     /locus_tag="SF010_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8230583.1"
                     /translation="DLAARAAMSLAKNLLLNEQVNKAIEYINTILKANPEYFGKDIPR
                     SLELAKLFNQKGQFDISASIYEDAFAKMSKLDPSYEETLKDLALVLSHANRSSDAKKY
                     LDLYMDDYLDGKYLDEIKKASDEVFFALGDNNASFLHQRYTDLMKQYANKDENIANKA
                     LDEDVALYYKEGNFSAILAYKDLIESKKIPNATQFLEKAAINDLKNAIKADNCINAAN
                     IFMRFSAYDIGQKIENKKQMLACLIRTSNVEQALDYIDKNYNEDSIFYGLQKASILFD
                     NKQYPQVIKISKDIANSRILKSDDENFKAYYLQFLSLLRLNDYNQAIKILQILESFPM
                     NFSMVEAYDALLSYANDHNMQTTILTYAPKAIDYQNFKGINLFSPNLEFMYLDTLAKI
                     NKNEESLAVLTDLLKLKLSDKDKARALYIQALTYERMQNIQAEKESLKQCLEIKSVSN
                     WQNLCKSKNQILNQ"
     gene            complement(1439..>2013)
                     /locus_tag="SF010_001701"
     CDS             complement(1439..>2013)
                     /locus_tag="SF010_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8230584.1"
                     /translation="DFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSS
                     MQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDN
                     VEIANESAIISSTVSDIANNILEDVKKKRF"
BASE COUNT          734 a          268 c          306 g          705 t
ORIGIN      
        1 agatttagct gcaagagcag ctatgagttt ggcaaagaat ttgcttttaa atgagcaagt
       61 aaataaagct atagaatata ttaataccat tttaaaagcc aatcctgaat attttggaaa
      121 agatattcca agatctttag aacttgctaa attatttaat caaaaaggac aatttgatat
      181 aagtgcaagt atttatgaag atgcctttgc taaaatgtcc aaacttgatc caagttatga
      241 agaaacttta aaagatttag ccttggtttt atcacatgct aacagatcta gtgatgctaa
      301 aaaatacctt gatttgtata tggatgatta tttagatggt aagtatttag atgaaattaa
      361 aaaagcaagt gatgaggtat tctttgcttt aggtgataat aatgcaagct ttttgcatca
      421 gcgttataca gatttaatga agcaatatgc aaataaagat gagaatattg caaataaagc
      481 tttagatgaa gatgttgcac tttattataa agagggaaat tttagtgcca ttttagctta
      541 taaagatctt atagaaagta aaaaaattcc aaatgctact caatttttag agaaagcagc
      601 cattaatgat ttaaaaaatg ccataaaagc tgataattgt atcaatgctg caaatatttt
      661 tatgcgtttt agtgcttatg atataggtca gaaaattgag aataaaaaac aaatgttagc
      721 ttgtcttatc agaacttcta atgttgaaca agcacttgat tatatagata aaaattataa
      781 tgaagattct atattttatg gtcttcaaaa agcatctatt ctttttgata ataaacaata
      841 tcctcaggtg atcaaaattt ctaaagatat agctaattct agaattttaa aaagcgatga
      901 tgagaatttt aaggcttatt atttgcaatt tttgtctttg ttgcgtttaa atgactacaa
      961 tcaagctatt aaaattttgc aaattttaga aagttttcca atgaatttta gtatggtaga
     1021 agcctacgat gctttacttt cttatgctaa tgatcataat atgcaaacaa cgattttaac
     1081 ttacgcacct aaggccattg actatcaaaa ttttaaaggt ataaatcttt ttagtcctaa
     1141 tttggaattt atgtatcttg atactttggc taaaatcaat aaaaatgaag aaagtttagc
     1201 tgttttaaca gatttgctta aattaaaact ttcagataag gataaggcaa gagctttata
     1261 tatccaagct ttaacttatg aaagaatgca aaatatacaa gctgaaaaag aaagtttaaa
     1321 acaatgtctt gaaatcaaaa gtgtttcaaa ttggcagaat ttatgtaaga gtaaaaatca
     1381 aattttaaat caataagtaa atttagagat aactagcttt ttagctagtt atctaagatt
     1441 aaaacctctt cttcttaaca tcttctaaga tattattagc tatatcactt actgtactag
     1501 aaataatagc tgattcatta gcaatttcaa cattatcttt agtagtttga tcaatttgag
     1561 ctacgctatc attgatttga gtgatacctg cagtttgttc tttaatactt tctgccatat
     1621 cattgataga ttgaacaagt aaattagtat tagcttcaat ttctgataaa gacttttgag
     1681 ttctttcagc taactttcta acttcatcag ccacaacagc aaagcctcta ccatgttctc
     1741 cagcacgagc tgcttcaata gctgcattta aagctaaaag attgatttga tctgcaatat
     1801 cacctataat acctgtaaca tttttaatct cttcagattg agtgataaca tcactagttt
     1861 taactgaaac attttgcata gaagaagtga tctcttctaa agctgctgca gtttcttcta
     1921 aagattgagc ttgagaattt gaagaagtgg ttaagctttg aacagcagtt tgtaattttc
     1981 cactttcatt agctaaagca ttagcaaagt ctg
//
LOCUS       DARGEX010000149         1994 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.150, whole genome shotgun sequence.
ACCESSION   DARGEX010000149 DARGEX010000000
VERSION     DARGEX010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.150"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            58..1374
                     /locus_tag="SF010_001702"
     CDS             58..1374
                     /locus_tag="SF010_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8230585.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1350..>1994
                     /locus_tag="SF010_001703"
     CDS             1350..>1994
                     /locus_tag="SF010_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8230586.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
BASE COUNT          658 a          215 c          360 g          761 t
ORIGIN      
        1 tttttaagta gaattgtttt ttaaaaaaat atttaaaaaa agagataaga taacatcatg
       61 gcaaaaaaac aactctcctt aacaagactt agttttccta tattttggga tttgctttct
      121 aagtatttaa ccgtgattat caataccgct atggtgtcgc attattctaa ttttcttgtt
      181 ggtgctatgg gcgctggaaa tcaaatttta gatcttttta tcactatttt ttcattttta
      241 agtgtgggtt gtagtgtggt gatcgcacaa gcaattggtg caaaagatca tgttttagca
      301 agaaaagtga ttcatcaaag tttgttctta aatgcacttt taggctttgt atgcggtgtg
      361 cttattttat ggcatgggga gtatttgctt tatcttttaa aaattccaca agaattgctc
      421 aaagatagcg aaatttactt acatatgctt gcaatttgtt tgttttttga tgccataggt
      481 attgttttag ctgctattgt aagggtttat aatatggctt attgggtcat gtttataggt
      541 tttttgatgg atatagtggt gatttgtgga aattattatg ttttgcatta tacaaagtca
      601 gaactttttg gaatagggct tagtaatatt tttgctcgca ttgttgctat agttgctttg
      661 tttgcgatac ttttttataa acttaaaatt catcttaaaa tcaaagaaat gataaaactt
      721 gaaaaagaag ttttaaaaaa ggttttaaat ataggaggat tttcagcagg ggaaaatctt
      781 ttgtggatag tccaatatac tatagctttt gcttttgtag caagcttagg tgaggcgagt
      841 ttgagtgtgc aaacgattta ttttcaaatt tcaatgctta tcatgcttat aggacaagct
      901 acgagcatag ctaatgaaat catagtaggt aaattagtcg gtgctagata tgaaaatatc
      961 gcttataaac atgcttggcg tgctttatat tttagtgtaa tagcgagtgc tttagtggcg
     1021 tttttaaact atctttgtca agattttact atgcaaattt tagggcttaa agaagagcta
     1081 aaaaatttaa tgataccttt atttgctctt tcaatctttc ttgaaatttc acgaactttt
     1141 aatatagtta tggttaattc cttgcgcgca agtggcgatg ctaagtttcc attttttagc
     1201 ggacttgttt ttatgatggg ggtatctttg cctgtgggtt atgtgctttg ttttcatttt
     1261 aatcttggaa ttttaggagt ttggatagga ttttgtgcag atgaattttt gcgtggaatg
     1321 gtaaattcat acagatggaa aagtaaaaaa tggcaaggca aagctctagt ttaaaatcat
     1381 ttatttataa agatgagtgc tatttttatt ctaaaaaatg cataaaaact ttaagattaa
     1441 ggctaaatga aaagggtgaa tttgttctta gtattcctta tttttgcacc tttaaaagtg
     1501 tttatgagtt tttagataaa tcaagttctt ggatgaatga ggcaaaaaca agatttgaaa
     1561 aaaaagtttt aaaagatgat gagttaatct ttttagctaa aaaatatcaa attatttttg
     1621 atgaaaatgc caaaaaaatt tattttgata aagataaaat aatttgtcaa aataaagcaa
     1681 aattggattt atttttaaga caaaatgcta aaaagatttt tactttttat cttaaaaaat
     1741 ggagtaaaaa aacaggctta ttttacacgc atttaagcat taaaaatatg aaaacacgtt
     1801 ggggttcttg caatcacaat aaagcttata ttaatttaaa tttaaaactc attcaaaaaa
     1861 gtttaagagc tattgaatat gtgattttgc atgaaattag ccatttaaaa tttcccaatc
     1921 atagcaaaga attttatact tttatagagc attttatgag tgattttagg caaagagaga
     1981 aagaattttt aagt
//
LOCUS       DARGEX010000150         1980 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.151, whole genome shotgun sequence.
ACCESSION   DARGEX010000150 DARGEX010000000
VERSION     DARGEX010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.151"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            34..1416
                     /locus_tag="SF010_001704"
     CDS             34..1416
                     /locus_tag="SF010_001704"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEG8230587.1"
                     /translation="MVKNSQFLLQGIFSNEDFKTVFEFQDENQQKISHNINKAGDIQT
                     LAIPKECKFIRFGLRIQGSGKFQIDNLILDFLNPQPFALIAKSKKLVLTKQYPSYDDL
                     YKYGFLHSRIKAYKEKGILVDVFKLSNTQRYECREFEGIDVMTASNDVLEETLISGQY
                     DHILVHFLDKNMWSVLKKFIDKIKITVWIHGAEIQIWQRREFEFERYSEIEIQRQKKL
                     SDQRVKFWTEIFNANYKNIHFVFVSEYFKNESLGDLKVALEPSKYTIIHNPIDTSMFD
                     YLPKSPDDRKKILSIRPFTSRKYANDLSIKAILELSKREFFKELEFFIAGDGVLFDEL
                     TNNLKSFKNITLYKGFLTQKEISNLHKKYGIFLNPTRMDAQGVSRDEAMSSGLVPITN
                     NIAAIPEFIDGECGILVAPENAKLLADAIEFLYKNPNEFMKLSINAANRVRNQCDKNT
                     IISKELDIIL"
     gene            1470..1658
                     /locus_tag="SF010_001705"
     CDS             1470..1658
                     /locus_tag="SF010_001705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230588.1"
                     /translation="MKNNFELIDYYARSSFASLASSAMIEQSVLDNIQSSFQKRMVLR
                     DMDKSFIRKLKKMILIVY"
BASE COUNT          765 a          199 c          318 g          698 t
ORIGIN      
        1 tttaaaaatt cttttacaag agaaactttt aacatggtaa aaaattcaca gtttctactt
       61 caaggtattt tttcaaatga agattttaaa acagtatttg aatttcaaga tgaaaaccaa
      121 caaaaaattt ctcataatat taacaaggct ggagatattc aaactttggc catacctaaa
      181 gagtgcaaat ttatccgttt tggtctacgc atacagggca gcggcaaatt tcaaatagat
      241 aatttaattt tagatttttt aaatccacaa ccttttgcac ttattgctaa aagtaaaaaa
      301 ttggtcttaa ctaaacaata tccttcttat gatgatttat ataaatatgg ttttttacat
      361 tcaaggataa aagcatacaa agaaaaaggt atcttagttg atgtatttaa gcttagcaac
      421 acgcaaagat atgaatgcag agaatttgaa ggtattgatg tgatgacagc ctctaatgat
      481 gttttagaag aaactttaat aagtggacaa tatgatcata tattagtaca ttttttagat
      541 aaaaatatgt ggagtgtctt aaagaaattt atagataaaa ttaaaattac agtttggatt
      601 catggtgctg aaattcaaat ttggcaaaga agagaatttg aatttgaaag atatagtgaa
      661 attgagattc aaaggcaaaa aaaactttct gatcagagag taaaattttg gacagaaatt
      721 tttaatgcaa attataaaaa catacatttt gtttttgtaa gcgaatattt taaaaatgaa
      781 agtttgggtg atttaaaagt agctttagaa cctagtaagt atactattat acataaccca
      841 atagatactt caatgtttga ctatttacct aaatctcctg atgatagaaa aaaaattctt
      901 tctatccgtc ctttcacctc tagaaaatat gcgaatgatt taagcatcaa ggctattttg
      961 gagcttagta agagagaatt ttttaaagaa ttagaatttt ttatagccgg tgatggggta
     1021 ttatttgatg aattaactaa taatttaaaa tcttttaaaa atattacttt gtataaagga
     1081 tttttaaccc aaaaagaaat atcaaattta cataaaaagt atggtatatt tttaaatcct
     1141 acaagaatgg atgctcaagg tgtctctaga gatgaggcta tgtcaagtgg tttggttccg
     1201 atcactaaca acattgcagc aatcccagaa tttatagacg gtgaatgtgg aattttagtt
     1261 gctccagaaa atgcaaagtt gttagctgat gcaattgaat ttttatataa aaatccaaat
     1321 gaatttatga aattatctat caatgctgca aatagagtaa gaaatcaatg tgataaaaat
     1381 acgattatat ctaaagaatt ggatataata ttatgaaaaa aatttgtatt tttggatcgt
     1441 gtgttagtag ggatataatt gaatatgata tgaaaaataa ttttgaatta atcgattatt
     1501 atgctagaag ttcatttgct tctttggctt caagtgctat gatagagcag agtgttcttg
     1561 ataatataca gtcatctttt caaaaacgca tggtgttacg tgatatggat aaatctttta
     1621 taagaaagtt aaaaaaaatg attttgattg tttattgatc gattttattg atgatagatt
     1681 tcatttttat aaaatattaa aaaatagcat agttacagtc tcaaatgagt ataaaaaagc
     1741 aaaaggaaag ttatatagtt ccaatatgat ttattctaag agtcaagagc atattgattt
     1801 gtggaggaaa ggtattgaaa aatatatatg atttatatat gattcaagat aaaattgttt
     1861 taaataaggt atattggtca gatgtttttt ataatggaaa taaattttca attagtcaag
     1921 aagaattgat tagcaataat aattttttaa aagaacgata tgatgatttt gttaattttt
//
LOCUS       DARGEX010000151         1969 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.152, whole genome shotgun sequence.
ACCESSION   DARGEX010000151 DARGEX010000000
VERSION     DARGEX010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.152"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1774)
                     /locus_tag="SF010_001706"
     CDS             complement(<1..1774)
                     /locus_tag="SF010_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8230589.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLNTEELDNVLNYAKSVFLKYFDELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYEFFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKI
                     AKNFLEQSQILIQEKSKFLDLKKAE"
     gene            complement(1764..>1969)
                     /locus_tag="SF010_001707"
     CDS             complement(1764..>1969)
                     /locus_tag="SF010_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230590.1"
                     /translation="NINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDINILN
                     SFEENLEKIEKLKQLEMGLLNAD"
BASE COUNT          692 a          303 c          192 g          782 t
ORIGIN      
        1 gttctgcttt tttaagatct aaaaatttac ttttttcttg gattaaaatt tgactttgtt
       61 ctaaaaaatt ttttgcaatt tttgtcaaaa taggtttatt aataagcaaa gcttcaaact
      121 cataaacatt taattcattt aaaactcttt cataaatttc acttttttta ggataaaaaa
      181 gtacaaattc agaactatca agctcataaa gaacacggct ttcattgatt ttacgactaa
      241 aaaatgcaag gcttagtttt gtagcatttt cataatttgt aaaagcctta agatttaatt
      301 tttcaaaaaa taaatcaagt tctaaaatac ttttaaataa aagctcttta aaatctttca
      361 aaaagtactc atcacttgca ttgcaaaaag ctcttaattc actaaaattt ttatcacttt
      421 ggaaaatatg atctttttgt atgtttgaaa attctgcttt aaaaagtaaa atttctctct
      481 cgagtatgtt tataaagtct tttaatttca tcttgatttc ttcaaaagat ttataaagtt
      541 catttttgat ttttttaaac tctttactca ttacatcact attgtaaaac atcgccaaaa
      601 aagcatcgtc acttgaaata taaggtgctt tataatcata tcttgtgtat aaatctttct
      661 ttaaaaatcc tttgctttct ttgtaaaaat aagcatcttt ttccttaaca cttgcaaaaa
      721 tttcactaga aattctttcg ctaatgcttt taagctgttc taaaatctga tgatttaaaa
      781 tttcaatctc ttttaaaaaa aattcatacg ctaaaagtaa atgcttttca taactttgaa
      841 attgatttaa taaacgatca aaaataccta caaaaagttg attttcatct tctaaaattt
      901 cgcataaatt taaaattttt cttttaacaa atttttcttt taaagctgtt gtatctagct
      961 gagttaaaaa atcaagcaaa gattgaaaat tagatttttc atagctttgc tcatctttag
     1021 cttctttgca agaaatggca ataagctcat caaaatattt taaaaataca ctttttgcat
     1081 aatttaaaac attatctagc tcttctgtgt ttaatttatc tttttgattt aatacacaaa
     1141 tgctattttc tcctaaaagt tctaaatttg cttttatggc atcttcttca ctttttttgc
     1201 ctgcattatc aatcaaactt aaccaaatcg ctccatgaat atttttaagc tcatcaagag
     1261 ttgttaaagt atcattttca tttgcattta aacccggagt atctacaaga gtgatttttt
     1321 caagtaaagg aataggtgca aaaatatgca aactttttgc ttgttttact tcatttcttt
     1381 gatccgtata aaaggctaat ttttctatat ttgtgataat atcacttcta tcttcaaatt
     1441 ctactcttaa aaaatattct tttgcatagc gtaaaaaagt aggtttaaaa gtaacaggaa
     1501 caacacccgt aggcaaacaa tcacacccca agatcaaatt tagtaaactt gatttaccac
     1561 ttgaaaactg ccctataata gcgatattaa cattcttatc caaagaaaat acaagctctt
     1621 ttaattcatt ttctaaagca taacttgcat gcataaaagg ctcattaagt tccttgcaaa
     1681 gctcttgaat acgcccttta aaactatcat caaaactcac actataagta ttttcatagg
     1741 cttttataaa atcatttaaa agattaatct gcatttaaaa gccccatttc aagttgtttt
     1801 aatttttcaa ttttttctaa attttcttca aaagaattta aaatattaat atcttgattt
     1861 ttcagactct gtaaaacttt ttcaagactt tctaattttg atttttgatt tttttcataa
     1921 tgttttaatt tatcatttaa aaactcaaaa aatgctccat tgatattta
//
LOCUS       DARGEX010000152         1930 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.153, whole genome shotgun sequence.
ACCESSION   DARGEX010000152 DARGEX010000000
VERSION     DARGEX010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.153"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            26..1450
                     /locus_tag="SF010_001708"
     CDS             26..1450
                     /locus_tag="SF010_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG8230591.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            1507..>1930
                     /locus_tag="SF010_001709"
     CDS             1507..>1930
                     /locus_tag="SF010_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG8230592.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNF"
BASE COUNT          724 a          280 c          339 g          587 t
ORIGIN      
        1 aaatttatta ttttaggaga aaacaatgaa aaaattgact aacgattttg gaaacattat
       61 agccgataac caaaattcat taagtgcagg cgcaaaagga cctttgctta tgcaagatta
      121 tcttttgctt gaaaaacttg ctcatcaaaa tagagaaaga attccagaaa gaaccgttca
      181 tgccaaggga agtggggctt atggagaaat aaaaatcacc gctgatttat ctgcttatac
      241 taaggcaaaa atatttcaaa aaggagaaat aactcctctt ttcctacgct tttctactgt
      301 tgcaggtgaa gcaggtgcag cagatgctga gcgtgatgta cgtggatttg ccattaaatt
      361 ttacaccaaa gaaggaaact gggatttagt aggaaataat actccaactt tttttatccg
      421 tgatgcgtat aaatttcctg atttcattca tactcaaaaa agagatccaa gaactcatct
      481 aagaagtaat aatgctgctt gggatttttg gagtttatgt cctgaaagtt tacatcaagt
      541 aaccattctt atgagcgata gaggaattcc tgcaagttat cgtcatatgc atggatttgg
      601 aagccatact tatagtttta ttaatgataa aaatgaaaga ttttgggtga aattccattt
      661 taaaacccaa caagggatta aaaatcttac caaccaagaa gctgccgagc ttatagcaaa
      721 agatagagaa agtcatcaaa gagatctcta taatgctata gaaaataaag attttccaaa
      781 atggaaagtt caagttcaaa ttcttgctga aaaagatata gaaaaacttg gatttaatcc
      841 ttttgattta acaaaaattt ggcctcatag tcttgtgcct ttgatggata taggcgaaat
      901 gattctaaac aaaaatcctc aaaattattt taatgaagtt gaacaagctg cctttagtcc
      961 aagcaatatc gttcctggaa ttggctttag ccctgataaa atgttgcaag ctagaatttt
     1021 ttcatatcct gatgcacaaa gatatagaat aggaactaat tatcatcttt tgcccgtaaa
     1081 tcgtgcaaaa agcgaagtga atacttacaa tgtcgctggt gctatgaatt ttgatagtta
     1141 taaaaatgat gcagcttatt atgaaccaaa cagctatgat aatagcccaa aagaagacaa
     1201 aagctatctt gaacctgatt tagtcttaga aggcgtagca caaagatatg ctccactaga
     1261 taatgacttt tatactcaac caagagcttt atttaatctt atgaatgatg atcaaaaaac
     1321 tcaacttttt cataatatcg ccgcttctat ggagggagtt gatgaaaaaa ttatcactag
     1381 agctttagaa cattttgaaa aaatttcacc tgattatgca aaaggaatta aaaaagcttt
     1441 agaaaaataa tttttacttg ccacttttgg tggcaaacta aagattataa taattaagga
     1501 aaaacaatga caactcttag tttagaagaa gaaaaaagat ttgaagagct ttgcaaaatg
     1561 gcttttaatt ttgcaagaaa taatgaatgt gaaaatctta aaatcatgat agaagcaggt
     1621 ttaaatgtaa atttaaaaac tcataaaggc gatagcttgc ttatgcttgc agcttataat
     1681 aattcttatg aaagcgctaa aatgctttta gaaaaaggtg caaaagtaga tgaaaaaaac
     1741 gatcgtggac aaaccccatt agcgggagtt tgttttaaag gatacttacc tatgtgtgaa
     1801 cttttagtta aatatggagc aaatattgat gaaaacaatg gtttaggaat gacaccttat
     1861 acttttgcta ttatgtttgg acgcaaagat gtggcagaat ttttactcaa aaaatctaaa
     1921 aataattttt
//
LOCUS       DARGEX010000153         1887 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.154, whole genome shotgun sequence.
ACCESSION   DARGEX010000153 DARGEX010000000
VERSION     DARGEX010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.154"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            29..1453
                     /locus_tag="SF010_001710"
     CDS             29..1453
                     /locus_tag="SF010_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8230593.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIVLVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIVIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAVLGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMVAGYL"
     gene            1595..1776
                     /gene="kdpF"
                     /locus_tag="SF010_001711"
                     /pseudo
     CDS             1595..1776
                     /gene="kdpF"
                     /locus_tag="SF010_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
BASE COUNT          543 a          253 c          357 g          734 t
ORIGIN      
        1 ttaaatatta attttcaaag gagttaaaat ggacttttta acaagcctta gtgagggagg
       61 gcaatttgca atccaaatca ttatcgtttt aatttgtctt ttttacggtg caaaaaaagg
      121 tggtatagcg cttggtttgc ttggtggtat aggtatttta atgcttgtat ttgcttttca
      181 tataaaacct ggaaaaccag ctatagatgt tatgcttaca attttagcgg tagtggttgc
      241 aagtgcaact ttgcaagcaa gtggtggtct tgatgttatg cttcaaatag cagaaagaat
      301 tttaagacgc aatcctaaat ttttaacgat attagcgcct tttgtaacct gctttttgac
      361 tatactttgt ggaacaggac atgtggttta tactattatg cctattattt acgatatagc
      421 gattaaaaac ggtattcgtc ccgagcgtcc aatggcagca gcttctatat catcacaaat
      481 gggtattatt gcatctcctg tatctgtggc tgttgtgagt ttgaccgctt tgcttttaaa
      541 tgctaatcat aaattagcgg gttttgatgg ttatatcaat cttcttcaaa ttactatacc
      601 tagtacattg tttggcgtat tgtgtgtagg aattttttct tggtttagag ggaaggattt
      661 ggataaagat gaggtatttc aagaaaaact taaagatcct gaatttaaaa aatatgttta
      721 tggggattct aaaacacttt taggtgttaa acttccaaag agcaattggg ttgcaatgtg
      781 gattttctta ggagctattg ttttagtggc tttactgggc gtatttgatt ttttacgtcc
      841 aaattggggt caagttgtaa aaaatggcat tcctcaagta gatgctttag gcaatcctaa
      901 aatggacgtt ttatctatgg tctcagtcat tcaaatgttc atgcttttag caggttcttt
      961 gattgttatc tttactaaaa cagatgcaaa gaaaattggc tctaatgaaa tttttaaatc
     1021 tggcatgata gcacttgttg cggtttttgg aatttcttgg atggctgata ctatgtttgc
     1081 agttcatact cctatgatga aagcagtgct tggagatata gtaaaagagc atccttggac
     1141 ttatgctgta atgcttcttt tgatttcgaa atttgtaaac tctcaagcag cggctatttc
     1201 ggcttttgtt cctttggctt taggaattgg tgttgaaccc ggtgtgattg ttgcttttgc
     1261 agctgcttgt tatgggtatt atattttacc aacttatcca agcgatttag ctactataca
     1321 atttgacaga tcaggtacta ctcatattgg taaatttgtt attaatcata gttttatttt
     1381 accaggtctt ataggtgtaa ttacttcttg tatagcgggt tattttatcg ctatggtagc
     1441 gggctatctt taaaaaattt tagcaggatt gttcctgcta aattctccat ttatcttttt
     1501 gtttaatgta aataaaaatt ataaataaat cataaaatta gtattaatca aaatataagc
     1561 ttaacaagga tagaataaat cctattttga atcaatgaga aagggctatc ctatggatgt
     1621 tatctttgct tttgctttta gcttttggta gtttatgatt ttttatccat ttttgtgaaa
     1681 ttcaaactag gacatgcgga tgatgttttt actagtttta agcttaatac ttgctcttta
     1741 tttattttat gcttattata tcctgaaaaa ttttaaagga aaaatatgct agaaatttta
     1801 ataacactga ttatagcttt tatattggct ttaatttttg gaaactatct ttataaaatt
     1861 gcaagctgta aaaaaactat ttttgat
//
LOCUS       DARGEX010000154         1808 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.155, whole genome shotgun sequence.
ACCESSION   DARGEX010000154 DARGEX010000000
VERSION     DARGEX010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.155"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..254
                     /locus_tag="SF010_001712"
     CDS             <1..254
                     /locus_tag="SF010_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230594.1"
                     /translation="NKSIIDCQSIYDELYKLEATTDFTFEELQNYQAYIFLNSTLLTG
                     SNELPNNPFYFGELDQDNTIKQDTPSYYFSPSNEFKCKS"
     gene            396..>1808
                     /locus_tag="SF010_001713"
     CDS             396..>1808
                     /locus_tag="SF010_001713"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230595.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEILKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVLYRVDEMLVYVYDSFDFL
                     DQGHEFDDKGNFIKLGQPVGAWDFNEKSFSIEGSLYQMGTYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDY"
BASE COUNT          735 a          244 c          266 g          563 t
ORIGIN      
        1 aaaataaaag cataattgat tgtcaaagta tttatgatga actttataaa ttagaagcaa
       61 cgacagattt tacttttgaa gaactccaaa actatcaagc ttatatcttc ctaaactcca
      121 ctctccttac aggctcaaat gaacttccta ataatccttt ttactttgga gaattagatc
      181 aagataacac tataaaacaa gatacaccta gttattattt ttctcctagt aatgaattca
      241 aatgcaaatc ataaaggata aaataatata tgaaaacaag ccaaatatat gaaactttat
      301 aaatatgcta gaatgtgctg gactaggtat tctataaatt taaatgagaa catgcttaag
      361 gaatttctaa aatataaaaa caataggatg aaataatgga tgaagaactt ttttgggaaa
      421 acattgttcc agtaggacat attaatgaag aaactttaaa gagccaaatt tatattaata
      481 atataaattt tagcacttta caatatgatg aaacagtttt acctacagaa ttagagtgtt
      541 gttataatga atttaaatac tatcaaaaaa gcaataatga aatagcaaca ctaggttggg
      601 ctattagcta tcaacttcaa gtattgtggc aaaatagccc taagatagat acaatacaaa
      661 attatcatct ccccgtaaaa caaaataagc ctaataatcc ccaagcagaa caaagactaa
      721 aagaaataca aaatttctta caaagtaaag gtatagaacc tcttatttta cattacaccc
      781 cttatccaaa caacacacaa acccaagaga tgaaaagact aaggcaaaat tcagagcgtt
      841 tttcgcgcca tgtagataat aaaacaaatg aagtaagaga agaaaggcgt tctattaaat
      901 tttacactac gctagattgg gataagtttt attctcattt tcctataata aaaagactaa
      961 gtaaaaaatt tcatacaaaa gaagacatat acactcaaaa ttttacaaag caaatagaaa
     1021 taatcttaca aaaaactcat aatattttga tattaaaaaa tttacctcaa ggagaatata
     1081 aatttgattt tgcgatcgat ataaaagaaa atcgaagcga taaaaatgaa gaatcttatt
     1141 tcatcattaa agaaaatgat gaaattttaa aagattataa acgcatttta gactgtaagc
     1201 cctatgagct tgatacttta aattgtcaat atataggtgt gggtgatgat gagtttttca
     1261 gacaaatttg gcaaaattta ggtataaata ttgcagagaa atttaaggta gatttttctt
     1321 atgctagact tgataaattt atttttgcga catcgccatt tggacttact tataatacat
     1381 atgagacttt agagcaaact tatgatgaac tcatgcaaga tctatctctt tatgcttgta
     1441 gtggtaaatt ttcttttaat tttgttcctt caaaattaag cattaaaaaa gaaattcaag
     1501 gagatagaga aaaagtgcta taccgcgttg atgaaatgct tgtttatgtt tatgatagct
     1561 ttgatttttt agatcaagga catgaatttg atgataaggg aaattttatc aagctaggac
     1621 aacctgttgg agcttgggat tttaatgaaa agagttttag catagaaggt tctttatatc
     1681 aaatggggac ttatagagaa tggcttgaat gggaaataga tggatataaa attgattgtt
     1741 caataagccc tcaaagaatt ctgcaatctc caaaaaccaa acaatactat ctttacaatc
     1801 aagattat
//
LOCUS       DARGEX010000155         1795 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.156, whole genome shotgun sequence.
ACCESSION   DARGEX010000155 DARGEX010000000
VERSION     DARGEX010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.156"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..292)
                     /locus_tag="SF010_001714"
     CDS             complement(<1..292)
                     /locus_tag="SF010_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230596.1"
                     /translation="MSKAFTLFELIISLILFTFITNLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALIL"
     gene            complement(289..591)
                     /locus_tag="SF010_001715"
     CDS             complement(289..591)
                     /locus_tag="SF010_001715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEG8230597.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(588..1319)
                     /locus_tag="SF010_001716"
     CDS             complement(588..1319)
                     /locus_tag="SF010_001716"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG8230598.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(1319..1708)
                     /gene="fliW"
                     /locus_tag="SF010_001717"
     CDS             complement(1319..1708)
                     /gene="fliW"
                     /locus_tag="SF010_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG8230599.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT          623 a          230 c          268 g          674 t
ORIGIN      
        1 ctaaaataag agcagaatta ataagataaa gtttattatc ttttaggcta attaactcat
       61 cttttaaaag acattttaat gtattctgtg aaaatgtaat attaatacaa ttttgtatta
      121 atttttctat tttaagcaag tttaaatgtg cttgagtgat aagattgttt gtatgtaaag
      181 cagtaaaatt taaatgataa aaatccatta aaggttttga aagtaagtta gttataaaag
      241 taaaaagtat tagtgatatt ataagttcaa aaagtgtaaa agctttgctc attctttaaa
      301 ataaacgcta taattttgat cttgaaagta taatttttga aattgaaata taccgtcatt
      361 aacaaactgt tcttgtaaaa ctataggttt taaggctgaa gtttgaagta tgatggtttt
      421 aaaaataggc ttttcatata attcttcttg aagtttatag agtctttcaa aaatatttaa
      481 attttcatag tttttgtaaa gttgaatata gtaataaaaa atgccaatga aaattaaaga
      541 tatgatcgtt atagcactaa tgctttctat aagtatgaaa gcctttttca tttagcgctg
      601 ctagcattta tggcttcaaa aaaacttccg cgaattcctt tttgttcgag tatttttatg
      661 ccttttattg taactccgcc aggggagcaa atattttctt tgataatagc tggatgttca
      721 tgttctagta aagcactaga gcttttaaat aaagagcgcg taagattgag actaagttct
      781 tttgacaaac cttcataaac tccagcatta gcaatgcttt ctgctataag tgctaaaaaa
      841 gcaggagcgc agccgctaat cgccatagct gcattcattt gtatttcatt atctaattta
      901 taagccgagc caaaagtttt taaaatgtct aaaatttcat tttcaaaatg agagttttta
      961 agtatatatg gtgtggttga agccttgtat ttagctgctg tattgggtat tattctaaca
     1021 taattttgag ctttgatggt ttgtagtttt tcaaaatcaa cattggctaa aacagagatt
     1081 aagatacgtg cttgtccttt tagcatttga gcaatatttt ctaaagcata aggtttaaat
     1141 gctaaaataa catctttacc ttctatgtta aaatctttgt aaagtaaggt tttaaagcct
     1201 tctttggcga gggcttgaag tttttctata cttcttccta ctatacaaat ttcataatca
     1261 tcttttaacc cataggctaa ggctgttgcc atagatccat ttgcaagtat atagagcatt
     1321 attttttaat ataattagca atttgatcag cttgaaaaaa gtcgggataa ttaactgtat
     1381 ctagtatcac ttgtaccata gtattattat caagattaat gactactgga gctagaaaat
     1441 tcactgtcga ttcttcaatg ctttttgcta tggctactat attaaaaatt ttcatattag
     1501 attcaggtgt taaagaaaga agctcttgat aataagttgg tatatcaaat tcataatcag
     1561 gtctaatcaa ataaggatta attaaaacaa aagaaaagtc tttaccatca agacttttaa
     1621 gtcttacaaa tacttcatcg atagttgaaa attccatatt tttggtttct tcaaaaccta
     1681 agatagggca tttaacagct agggtcatgt tttctcctca agttataatg tttaatattt
     1741 taacataaaa taagcaataa tcattccaaa attttaaatt atttaattaa tttta
//
LOCUS       DARGEX010000156         1764 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.157, whole genome shotgun sequence.
ACCESSION   DARGEX010000156 DARGEX010000000
VERSION     DARGEX010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.157"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1090)
                     /locus_tag="SF010_001718"
     CDS             complement(<1..1090)
                     /locus_tag="SF010_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8230600.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYL"
     gene            complement(1090..1734)
                     /locus_tag="SF010_001719"
     CDS             complement(1090..1734)
                     /locus_tag="SF010_001719"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230601.1"
                     /translation="MINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSKSQQQINFD
                     YLVLDNNKINSFYSKNLVNFNEENSTINLNIQGKSNEIDIDLKSLLGQNLNFDKTKFN
                     ITINKFLNSNFNISHFIQKNLDLEIQNLILEKNKQNISLQGNLNINNSYQAKLQVISS
                     DEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
BASE COUNT          599 a          247 c          239 g          679 t
ORIGIN      
        1 taagatattt ttgctctacc cagccaccaa aatcatgtgg ataaagatag ttttgttttt
       61 cttgatgatt gttgttaaga taattaggta tttctaaagc ttcattattt tttacatagt
      121 ttaaagcttc attgatagct ttgtagcttg cattagattt gattgtgctt gctaaataaa
      181 ctacgcattg ggctaggata attcttgctt caggataacc tatattttta acagcctcta
      241 gagtcgaaac cgctaaattt aaagcatttg gatcggcatt tccgatatct tcacttgaaa
      301 aaatcaccaa acgcctagcg ataaaatccg cactttctcc tgcatcaata agtcttgcaa
      361 gataataaat agctgcatca acgtcacttc cgcgtaaact ttttatcatt gcacttgcta
      421 aaatataatg tgtatctttt gagctaacac cttcactatt tatggtgttg cgaagttttt
      481 taagattttc aagactgata tgtttttcat ttaaaaccaa gacaaattca agcaaattta
      541 gcatagctct tgcatcagca cttttcagta gaaaatcttt agcttcttta tcaatactaa
      601 atttcatttt ttcttgtaca cgcaagagta aagtttcaag ttcctttacc cctaaagatt
      661 taaattcaaa aagcatggaa cgacttctta taccagaact tagaacaaaa tagggatttt
      721 cagtgcttgc gccgattaaa attaaacggt aattttccat aggaattaaa agcatttctt
      781 gttgggtttt gctaaggcgg tgaatttcat caataaaaat taaaggctta taaagactat
      841 ttttataatt atctaaaatt tttcttagtt cttcgagttt aaaatttcct ccatcaaatt
      901 cataaaaatc taagccaaat tctttggcta caactctagc aaaagttgtt tttccagaac
      961 ctgccgttcc aaaaaaaata ctatgaggaa gtttttgtaa agcagtaaat tttttgaaaa
     1021 tttctataag ctcatattgt cctaaaatat catcaaaatt ttcagggcga aaggtcaaag
     1081 ctaggctcat taatttaaat ccatatttga aaattcacta ccattaattt ttagttgagg
     1141 attggctaag ctatcataag ataaatttag aaaaaagtta ttattttctt ttaaaaaata
     1201 ttgatttaaa cctccataat cttttgtcca aggaaaaatt tcatcaggct catctgaact
     1261 gataacttgt aattttgctt gataagagtt gttaatattt aaattgcctt gtagactgat
     1321 attttgttta tttttttcaa gaattaaatt ttgtatttct agatcaagat ttttttgaat
     1381 aaaatgagag atattgaaat ttgagttaag aaatttattt atggttatat taaattttgt
     1441 tttgtcaaaa tttaaattct gacccaataa agatttaaga tcaatatcaa tttcattgga
     1501 ttttccttgt atgtttaagt ttattgttga attttcttca ttaaaattta ctagattttt
     1561 gctataaaaa gaattgattt tattgttatc taacacaaga taatcaaagt tgatttgttg
     1621 ttggcttttg ctaaataaat ttaattcata aaattgtaca ggattgttaa aaaattgttc
     1681 gtaatttaaa ttttgcaaca caaatttagt ataaaattga gaaaaattaa tcatatcaaa
     1741 atgtatttta atgtttttaa tttc
//
LOCUS       DARGEX010000157         1720 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.158, whole genome shotgun sequence.
ACCESSION   DARGEX010000157 DARGEX010000000
VERSION     DARGEX010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.158"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(157..>1720)
                     /locus_tag="SF010_001720"
     CDS             complement(157..>1720)
                     /locus_tag="SF010_001720"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013672.1,HMM:NF019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8230602.1"
                     /translation="PFALTGEGLEKECGIYLIMDILEKYNLKGVFFVNIYEHRNFNGI
                     IEKIVKDINDRGHEVGLHYHANVSSKWQKNFPDYSLEEQTEILKYGRDFIFNIIKKYP
                     VSFRGGGYQINMNTFKALEYSGFKYDSSAFVSYKQDMIYKSINKVVQYGNIIEFPVST
                     NFLFNYPMKLDLNTQGNARDMLDIMSSHRFNGLENIVIMLHSFSFIKWYKGNDDKLKS
                     KLKFTGNRYAIGVNNNLINEFELFCKSISDNEEFENALFENLTLAEIESSLANEKDFV
                     PKDIIKYSNEKSTCPICENNVSFQEYRNRKNAICPKCRSLERMRFKYLYLKRFLHINT
                     MKNKNILHIGPAMCVYNKLRSLNQINYITSDPFSDSIYNYPLENIPFADGYFDIIICV
                     GILIHVLDDDKCLREMHRLLSKNGKLILWVGDLYNDKTVERYNRADFDKMKAISFDYP
                     DNLSDGKTILLDDGSIGYNPRYSTRTYGKDFVDKLKNMGYDADIIKSQDIAGYKKYGL
                     REDDVLIIGSRI"
BASE COUNT          620 a          293 c          133 g          674 t
ORIGIN      
        1 ccaaatctaa tacatactcc atcttatgca atataaaaat ataacctgta tgatcatatg
       61 gattatatgt ccaatctata atgttaaaat ttatgtcttc ataatcatat aatcttaaaa
      121 ttttattttt aattaaatat tgtaaatcat cttcactcat attctacttc ctataattaa
      181 aacatcgtct tctcttaatc catatttttt atatccagct atatcttgag attttataat
      241 gtctgcatca taacccatat tctttaactt atctacaaaa tctttaccat aagttctagt
      301 cgaatacctt ggattataac ctatgcttcc atcatctaac aatattgtct ttccatctga
      361 caagttatca ggataatcaa aacttattgc tttcatctta tcaaaatcag ctctattata
      421 cctttcaaca gttttatcat tatataaatc tccaacccaa agtattaatt ttccattttt
      481 agataataat ctatgcatct ctcttaaaca tttatcatca tctaatacat gaattaaaat
      541 acctacacat ataataatat caaaataccc atctgcaaat ggaatatttt ccaatggata
      601 attatatata gaatcagaaa atggatcaga agttatatag ttaatttgat ttaacgatct
      661 taacttatta tatacacaca tagcaggacc tatgtgtaaa atatttttat ttttcatagt
      721 atttatatgt aaaaatcttt ttaaatacag atatttaaat ctcattcttt ctaaagatct
      781 acattttgga caaatagcgt tttttctatt tctatattct tgaaaagaga cattattctc
      841 acatatagga caagtactct tctcattact atattttatg atatcttttg gaacaaaatc
      901 tttttcattt gccaaggaac tttcaatttc tgctaaagtt aaattttcaa acagtgcatt
      961 ttcaaactct tcattatctg aaatactttt acaaaataac tcgaattcat taattaaatt
     1021 attattaaca cctattgcat atctattacc cgtaaatttc aattttgatt ttaacttatc
     1081 atcatttcct ttataccatt ttataaaaga aaaagaatgc aacattatca ctatattctc
     1141 aaggccattg aatctatgtg aactcattat gtctaacata tctcttgcat ttccttgagt
     1201 atttaaatcc aatttcatag gataattaaa taaaaaattt gtagatactg gaaattcgat
     1261 aatattacca tattgcacca ctttattaat agacttataa atcatatcct gtttataaga
     1321 cacaaaagca gatgaatcat atttaaaacc actatattcc aatgctttaa aagtattcat
     1381 attaatttga taaccacccc ctctaaacga aacaggatat tttttaataa tattaaatat
     1441 aaaatctcta ccatatttta atatttcagt ctgctcttct aatgaataat ctggaaaatt
     1501 tttttgccac ttagatgata cattggcatg ataatgtaaa ccaacttcat gtcctcgatc
     1561 atttatatcc ttaactattt tttcaataat tccattaaaa tttctatgtt catatatatt
     1621 tacaaaaaaa acacctttta aattatattt ttctaatata tccattatta aataaattcc
     1681 acattctttt tccaagcctt cacccgttaa agcaaatggt
//
LOCUS       DARGEX010000158         1694 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.159, whole genome shotgun sequence.
ACCESSION   DARGEX010000158 DARGEX010000000
VERSION     DARGEX010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.159"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            216..1081
                     /gene="dcuC"
                     /locus_tag="SF010_001721"
                     /pseudo
     CDS             216..1081
                     /gene="dcuC"
                     /locus_tag="SF010_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT          576 a          234 c          231 g          653 t
ORIGIN      
        1 tgctaatttt tatgatatac tcaaaaaaat acgatcccat ttttgtattt ttctttcaaa
       61 tattatcttg cttatttttg ctttttatat cacaggaaca cctataccaa aaactccaaa
      121 caaagagtat acaagctttt aaatgtttta cttgatagtt atcttttatc acagcgactt
      181 ttaaaagtca gctttctgga gcagggctta ttatcatgag tgtggcaggc tttactgctt
      241 acatgaaaca tatcaatgct tcggcaaaac ttgctttttt agcaaataaa ccctcaggaa
      301 aaatcaaaaa ataaatactt aattttaagt ggaacttttg ttgttggaat ggctttaaaa
      361 atcgtcattt ctagctatgc tgaattgctt ttgcttttgt tagcatgtat gtatcctgtt
      421 ttaatctcac ttaaaatccg tcctattaca actgtatgtg tgctttcttt aattgcactt
      481 gattatgatc caaaagatgg aaattcaatc aatatggcag atatggtagg acaaagtgat
      541 aatgtcgtag ggcttttttt aaattaccaa atttatagtg tgattaccta tgttgtaatt
      601 attgccatct tgattccttt ttattttgct tggattgata aaagagataa agaaaaaggt
      661 gttttaaatg atgaagttga aattccgcaa atcattgatc ctaaatgccc tactttttac
      721 acactctttc cttggttacc tgttatattt ttatttatag cgtatttttt tactatcaag
      781 ctcgatgttg tgatagcaaa ttttgtaaga atttctttag tttttcttgt tgaatttgca
      841 agacacagaa atgctagaaa attaggcgaa gatatgatgg tgattttaaa agactatggc
      901 tgaaattttt atcttagtcg taagcataat catcgccgct ggagtatgtg ctaaaggcat
      961 taaagcactt ggtggagtta atatccttac taacgcggtt tcaaatcttg gaacaggaaa
     1021 ttttgcatgg tttggaattc ttttgagtat agctatttta agctttttag tttattttgc
     1081 caatgctata ttgaatagga tttgcatcaa aatttaaaag tataaatatt gaagaaagtt
     1141 ttttgcaagt tctatccaaa tcttttgtga aaaaatcaaa ccctctatat ttactattaa
     1201 tttgaaaaag tattaatatt tataattttt tcatatttaa tatcaattta actaaaaatt
     1261 catcacttaa ttttgtatca cgaggcaaaa agtctttaat ttaagtaaaa tcaatctatt
     1321 taaatttctt atcaaaatat ttagtatcaa ctgctctaac taactttaaa gcaatttcac
     1381 tcatatgttt tctagctcta aaaaatgaaa aaagagatga tcaaattttt agaagttaaa
     1441 ctataaaatg tggataaact atatattttt taatttttaa atattataat tacttaacac
     1501 cccataaaga gctttaagac atacgaatat atcctaataa acatctacgt aaaatagtat
     1561 tttttcatca ttctaacata tttttacatt tttttgtcct ttaagcataa gccaaacaat
     1621 taaaaatgaa acgaaataaa caacttgaaa aagtaattta taattatcta tgagcatctt
     1681 tataggactt tttg
//
LOCUS       DARGEX010000159         1691 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.160, whole genome shotgun sequence.
ACCESSION   DARGEX010000159 DARGEX010000000
VERSION     DARGEX010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.160"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..1324
                     /locus_tag="SF010_001722"
     CDS             <1..1324
                     /locus_tag="SF010_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230603.1"
                     /translation="KLSETIKFIALNYGNDPKDSLIGIKHTLENLPKVLNHGIFQDFL
                     KERRGKVKNAIIVSTGPSLTKQLPLLKKYGHKMTIFCADSSYAILAKAGIKPDYVLSL
                     ERVHYTSELFNNDFKDFDKDILFIISSLTHKNTLHYLEKNNRTYMLVHRPLESAGILK
                     LDNFGYIGVGYSVANMAYELASALRHENIILIGQDLAYAEDGSSHPKDYLYLEQADNT
                     DNTTTLAYGKNGLVKTTLTWNLFRQTFEKDIFWTKEKLNINTYNCTEGGAYIEGSIEK
                     PFLWACENLLDESLNKPFSFPKSLSKKEANDKIDKIKKILQSAILQANKLIKSTQKEL
                     NKLKFELNRDEINLQTLEKIRKKLLISFKEYKKLKLFNELSRALYFHNECEIVKYEAM
                     DDENQKKYLSHFLKLQYNWFAQGLGYLDTQNKIIQEALQNWHFDDIKE"
     gene            1345..>1691
                     /locus_tag="SF010_001723"
     CDS             1345..>1691
                     /locus_tag="SF010_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230604.1"
                     /translation="MNFTSNQQEIFKQNINALVNEILRKKLQKIKNTKFELLLGNDNL
                     DINLRNTKDNTLLYINTIDELNSMLEIYNDKYLLYPVLYFYGFGNGILFKALLQNKHR
                     QHIVIFENDIEIL"
BASE COUNT          701 a          238 c          234 g          518 t
ORIGIN      
        1 aaaactaagt gaaactatta aatttatagc tttaaattat ggaaatgatc ctaaagattc
       61 tttaataggc ataaaacaca ccttagaaaa tcttccaaaa gttttaaacc atgggatttt
      121 tcaagatttt ctcaaagaaa gaaggggtaa agttaaaaat gctatcatag tttcgacagg
      181 cccaagccta accaaacagc ttcctttatt aaaaaaatat ggtcataaaa tgaccatatt
      241 ttgtgcagat tcttcttatg cgatacttgc caaagcgggt atcaaaccag actatgtttt
      301 atccttagaa agagtgcatt ataccagtga attatttaat aatgatttta aagattttga
      361 taaagatatt ttatttatta taagctcttt aactcacaaa aatactcttc actatcttga
      421 aaaaaacaat agaacatata tgcttgtaca ccgtcctcta gaatctgcag gaatactaaa
      481 gcttgataat tttggatata taggagttgg atatagtgta gccaatatgg cttatgaact
      541 agcaagtgct ttaagacatg aaaatatcat tcttataggt caagatttag cttatgctga
      601 agatggaagc tctcatccaa aagattatct ttacctagag caagcagata atacagacaa
      661 tactactact ttagcatatg gaaaaaatgg actagtaaaa acaacattga catggaattt
      721 attcagacaa acttttgaaa aagacatatt ttggacgaaa gaaaaattaa atatcaacac
      781 ctataattgc accgaaggtg gagcatatat agaaggcagc atagaaaaac cttttctttg
      841 ggcttgtgaa aatttattag atgaaagcct caacaaacct ttttcttttc caaaaagttt
      901 atcaaaaaaa gaggcgaatg ataagatcga taaaataaaa aaaatactac aaagtgctat
      961 tttgcaagca aataaattga tcaaaagcac tcaaaaagaa cttaataaac ttaaatttga
     1021 gttaaataga gatgaaatta atcttcaaac cttagaaaaa attcgaaaaa aattacttat
     1081 ctcttttaaa gaatataaaa aacttaaatt gtttaatgag ctcagtagag ctttatattt
     1141 tcacaatgaa tgtgaaattg taaaatatga agctatggat gatgaaaacc aaaaaaaata
     1201 tctatctcac tttttaaaac ttcagtataa ttggtttgca caaggacttg gatatctaga
     1261 tactcaaaac aaaatcatac aagaagcttt acaaaattgg cattttgacg atataaaaga
     1321 atgaaagaat acacaggaaa agaaatgaat tttacctcaa atcaacaaga aatatttaag
     1381 caaaatatca atgctctagt taacgaaata cttagaaaaa aattacaaaa aattaaaaat
     1441 actaaatttg aacttctctt gggtaacgat aacctagata tcaatttaag aaatacaaag
     1501 gataacaccc ttctttatat aaataccatt gatgaattaa actctatgtt agaaatttac
     1561 aatgacaaat atttacttta tcctgtgctt tatttctatg gatttggaaa tggaatttta
     1621 tttaaagcct tgcttcaaaa caaacaccgc caacatatag taatttttga aaatgatata
     1681 gagattcttt g
//
LOCUS       DARGEX010000160         1690 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.161, whole genome shotgun sequence.
ACCESSION   DARGEX010000160 DARGEX010000000
VERSION     DARGEX010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.161"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            493..837
                     /locus_tag="SF010_001724"
     CDS             493..837
                     /locus_tag="SF010_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230605.1"
                     /translation="MLTEKIDPKEQIQKEDIKKSKTLIIHLNSYLEAENNLQKIKILV
                     KIYQNLQKCSRTPDLIDIEELEFNKEDIFEELFYALGGLGGIYSVEMIQSRIANFIKI
                     LGGEPKLLLEQF"
     gene            complement(888..1558)
                     /locus_tag="SF010_001725"
                     /pseudo
     CDS             complement(888..1558)
                     /locus_tag="SF010_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867920.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT          635 a          238 c          195 g          622 t
ORIGIN      
        1 tagctcagct ggatagagca tttgattgcg gttcaaaagg ccagaggttc gaatcctctt
       61 gagcgcacca tcacttcttt tcttaaataa tcttgaatca tctgaaataa tcatctaaag
      121 catgatatag caatgtttga aagcttctaa aataatctca aataatcaat tttgacaatt
      181 ttaaaagtat atgttatagt atatgttaaa ttttaaaatt caaaaataac atatactttt
      241 taacatagga atattaaaaa tgattattgt taatgataag caacttaaaa ctttaattgt
      301 aaaaaaagaa catatattaa agatgcatac acaaaaaatc tctacatcga agcaaaagat
      361 tcgctaaaag gtactattat cttttttttt attttagata taggttaaaa aaaaatacaa
      421 agtattaaaa taggaaaata cccaacaacc acactgtcaa gcgcaagaga aaaagcaaat
      481 atttttaata atatgttaac tgaaaaaatt gatcccaagg aacaaattca aaaagaagat
      541 ataaaaaaat caaaaaccct aataatacac ttaaattctt atttagaggc tgaaaataat
      601 ctacaaaaaa tcaagatttt agtcaaaata tatcaaaatt tacaaaaatg tagccgaact
      661 cctgatctta ttgatataga agaacttgaa tttaacaaag aagacatttt cgaagaatta
      721 ttttatgctt taggcggttt aggaggtata tattccgtag aaatgataca atctagaatt
      781 gcaaatttca tcaaaatact tggcggagaa cctaaacttt tattagaaca attttaaaca
      841 catagacttc ttcttgaagt ctatgcaaat actcaatttt agaaaaatta attattcaat
      901 aacgcagctt ttattgtatc atttgttgct ttggcatata tagtagtagt atttagattt
      961 gcatgtctta gaattttttg tatgaccaca aggtttgttc ctttggctgt taatctcatg
     1021 gctaaagtgt gtctaagcaa atgaagtcct tttttgctga tcaaagcttt agcgtaaata
     1081 ttatttacaa tcaaaaaagc attacttcta tttaaatgtt ttcctgtgct agtttgcatt
     1141 atgtaatcac tatcttggat attttcttta aaatattcaa gctcatcatc tacttcttct
     1201 tttttaataa atgcaaattg ttctttaccg cccttgccta ttatggatat ttttaatatt
     1261 tcatcatcaa cctcttcaaa atcacaaagt tttacattta aagcttcaga aattctaagt
     1321 cctccataaa gcataagttt tatcagtaaa gagtttctaa aactattata aacttctttt
     1381 ttgctttttc tttctctaaa acattattta gccttataat ttcattttca ttaagataat
     1441 ttaatttttc tcctgatttt tctgttctaa acctaatttt cttcatatca aaggaaaaaa
     1501 caaacaaatc atcattatta tcgcttataa aagaaaaaaa gctagttaat actctcaaat
     1561 aagttatttt tgtttttttt gatagtttat tgccattttt tgaattattt tctaaataat
     1621 taagaaaatt gactaaaaaa gtcgttttta tatcgtttat ttgcatttca tcttgataat
     1681 ctaaagaata
//
LOCUS       DARGEX010000161         1541 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.162, whole genome shotgun sequence.
ACCESSION   DARGEX010000161 DARGEX010000000
VERSION     DARGEX010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.162"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..497)
                     /locus_tag="SF010_001726"
     CDS             complement(<1..497)
                     /locus_tag="SF010_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8230606.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVFSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGL"
     gene            complement(501..1523)
                     /gene="ilvC"
                     /locus_tag="SF010_001727"
     CDS             complement(501..1523)
                     /gene="ilvC"
                     /locus_tag="SF010_001727"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG8230607.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIVTEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
BASE COUNT          488 a          305 c          188 g          560 t
ORIGIN      
        1 tttaaacctc taacctgact tgcatttgcc atatcatcga taataatagc aagttttggt
       61 tttttagaaa ttttatttaa atgaatatct tcatcaaaag ttaaattttg atcttgggtt
      121 aaatttgtat cttttggaat aaaattttgt tctaaactct gattttgctc taaacttaaa
      181 ttctgctcca cactgcttaa attttgctca tttaaacttg tatttaaatc atcgatttct
      241 tgaatttttt gctctaaaat acttacagat ttattattat caaactcatt ctcttgaaaa
      301 ataccaattt cataatgatc tttatttgat gaaattaaat cttcttgttt atcaataaaa
      361 taatccggct taacagaaaa aacatcttgg gaattttgat attttactaa aattcccaaa
      421 gctaaagcta tacaaagtaa aaaaagtata gctatgatta aataacgctg aatttgaact
      481 aattttttct ttgacaatgt ttagttctta tctttatcta ctaatttttt agcactgatc
      541 caaggcatca tagcacgcaa attgcgccct gttttttcta tcaaagaatc attcatattt
      601 ttgcgttctg catgcattct agcaaaacct gcacggcgtt ctaagataaa atcttttgca
      661 aaaacaccat tttgtatatc ttttaaaaca cctttcatcg cttttttagt ctcttcagta
      721 acaatctttg gtcctgtaat ataatcgccg tattctgcag tatttgagat agaataacgc
      781 atatctgcaa taccaccttg ataaatcaaa tccacaatga gtttcatttc atgcaaacac
      841 tcaaaataag ccatttcggg ttcataacct gcttcaacca aagtctcaaa acctgcttga
      901 atcaaagcac taagcccacc acaaagcaca gcttgttcac caaaaagatc tgtttctgtt
      961 tcggctttaa aggttgtttc tataatacct gtgcgtccgc ccccaatcgc acttgcataa
     1021 cttaaggcta aatttttagc atttttactt tcatcttgat ggatggctat taaacaagga
     1081 gttccacctc ctaaagtaaa ttcatttctt actgtgtgtc ctggtgcttt aggtgctatc
     1141 atgataacat ctataccttt tggagcaaca atttgaccat aatggatatt aaaaccgtgc
     1201 gcaaaagcta tagccttgcc ttcgcttaaa tttggtttta tttcgacatt aaaaatatct
     1261 gcttgaattt catcaggagc taaaatcata atcacatccg ctatcttaga agcctcactc
     1321 acactcatta cttcaaaacc agcatttttt gctttaacag cacttacact accttcacga
     1381 agtccgataa ttacatttac gccattatct cttaaattca tcgcatgagc gtgcccttga
     1441 gagccaaagc ctataattgc tacttttttt gatttgatta aatttaaatc acaatcttta
     1501 tcataatata ctgtaatagc catattcact ccttaaaaat t
//
LOCUS       DARGEX010000162         1520 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.163, whole genome shotgun sequence.
ACCESSION   DARGEX010000162 DARGEX010000000
VERSION     DARGEX010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.163"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..632)
                     /locus_tag="SF010_001728"
     CDS             complement(<1..632)
                     /locus_tag="SF010_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230608.1"
                     /translation="MKYRYIKWDENEKCAIFFPDIDFDIWKKTQLLENDYANPTLIIS
                     SHLKDKVGILELFEYYILLICGKSMGVSRWECNNLILLDTYSIDNISSPFYLNTPKPT
                     YISEYINVLGQLFLAGYIDFGSYCDEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFYQ
                     DKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWIATTPKGTKYF"
     gene            complement(622..1254)
                     /locus_tag="SF010_001729"
     CDS             complement(622..1254)
                     /locus_tag="SF010_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230609.1"
                     /translation="MQNLKLQIAQGLDEILEDEDRKQELYVCKFVVVNGVSENNTQEI
                     IPDNVIRIQTQDGSGEFIEIVFPSQLELNDKPLEDVSYTFVPALRGIKQFFKDTEYLK
                     PRTLTKDEVLQIVDKLPKNVRDKRRRIVENKEELDKLWKKLTKNSEEFENKVDKKYGQ
                     PIYMRKLDDQTIIQYKKTSKSGGETIEINSNKPRGNLKTIHIENGIKNEI"
     gene            complement(1327..1520)
                     /locus_tag="SF010_001730"
                     /pseudo
     CDS             complement(1327..1520)
                     /locus_tag="SF010_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838773.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          472 a          256 c          176 g          616 t
ORIGIN      
        1 tggaagtatt ttgtgccttt tggggttgtt gctatccaga tattgtattg tgaccaatat
       61 tgtggtgtat cccaagaaac atcatttaaa ataagactat atccaccctc gtctaatgtt
      121 tcaggatcgt ccaaatctct aataaatttg tcttgataaa agaaattatc tctaaaatat
      181 atccaagctt gatatttatc ttctttataa taagataagt ttgagggata atctatttta
      241 tttctatctt catcacaata agatccaaaa tctatataac ctgctagaaa aagttgcccc
      301 aagacattaa tatattcact tatataggta ggtttgggtg tatttaaata aaatggactg
      361 ctaatattat cgatgctgta agtatctaat aaaattaaat tattacattc ccaccttgag
      421 acacccatgc tttttccaca aataagcaaa atataatatt caaatagttc taaaataccg
      481 accttatctt ttaaatgaga tgatataatt aaagttggat tagcataatc attctctaaa
      541 agctgggttt ttttccatat atcaaaatct atatcaggaa aaaaaatagc acacttttcg
      601 ttttcatccc attttatata cctatatttc attttttatc ccattttcta tatgtattgt
      661 tttaagattt cctcttggct tattggaatt tatctctatg gtctcacccc cgcttttaga
      721 agttttctta tattgtataa tagtttgatc atctagtttt ctcatataaa tcggctgtcc
      781 gtatttttta tctactttat tttcaaactc ttcagaattt ttagttaact ttttccataa
      841 tttgtctaat tcctctttat tttcaactat tctcctgcgt ttatctcgaa cattttttgg
      901 cagtttatct actatctgca acacttcatc tttagtcaat gttctgggtt ttaaatactc
      961 agtatcttta aaaaattgct ttatccctct taaagccgga acaaatgtat aactcacatc
     1021 ttccaaaggt ttatcattga gttctaattg actaggaaat actatctcaa taaactcccc
     1081 actgccatct tgtgtttgta ttcttataac attatcaggg ataatttctt gagtattgtt
     1141 ttcactaacc ccatttacca ccacaaattt acaaacataa agctcttgtt ttctatcttc
     1201 atcttctaag atttcatcta gtccttgtgc gatttgaagt tttaaatttt gcatttttgc
     1261 aggagctaaa aaactaaaat gatattcgtt taattcttta ttatcttcta aagcattttt
     1321 gatgatttta tcatactcat gtagctgtgt aaaataccct gctcctaaat ctttattttc
     1381 aaattcctta taagcacttt tataaacttt agcaatgttt tttgggataa taaaataaag
     1441 tttgattaaa ttagtatcaa agctaagatt taattcttta aattcataat ctttactaaa
     1501 gtcttgtttg aattgattaa
//
LOCUS       DARGEX010000163         1428 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.164, whole genome shotgun sequence.
ACCESSION   DARGEX010000163 DARGEX010000000
VERSION     DARGEX010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1428
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.164"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..257)
                     /locus_tag="SF010_001731"
     CDS             complement(<1..257)
                     /locus_tag="SF010_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230610.1"
                     /translation="MKRNTCEIELEIPNSGIFTISLENENLIISLDLAKFEYKKKLNA
                     GGLAKPLHPYIIYEVLEKNNKNTFNDVKIIDKIEDENNIIY"
     gene            complement(257..>1428)
                     /locus_tag="SF010_001732"
     CDS             complement(257..>1428)
                     /locus_tag="SF010_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8230611.1"
                     /translation="TSNKYTRAGYGEALREFLLKNVKFLEYTDLNGIKVFDSATVDTS
                     ILCFEKSKSKDNKFKYLALSNEILKTCAYNIGLYKDFAEFSQNSLSKESFTFSDENTS
                     ALKAKIERIGTPLKEWQGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAK
                     LIRKMLRGRDIKRYSYEWAGLWVIFIPWHFPNVEKPKTMLENEQDLKEQYPSLYKHLL
                     SHKERLSKRNKEETGIRYEWYCLQRWGANYYQEFEREKIVWASVGYIEHSFIPKDMLL
                     QDTNYFFSTSNRYLLGILNSKPITYYLADIQTPLGNTGAFRNYKYNIEKLPIPKINSK
                     NQNIVDELINLVDEILKAKEQDKNANTQELENKINSLVYKLYNLNEEEIKIIEGK"
BASE COUNT          405 a          230 c          194 g          599 t
ORIGIN      
        1 tgatagataa tattattttc atcttctatt ttatctataa tttttacatc attaaaagtg
       61 tttttattat ttttttctaa aacttcataa atgatatatg ggtgcaatgg tttagctaat
      121 cctccagcat ttaatttttt cttatattca aacttagcta aatctaaaga aataattaaa
      181 ttttcatttt ctaaacttat tgtaaaaata ccgctatttg gtatttctag ttcgatttca
      241 catgtatttc ttttcattat ttcccttcta tgatttttat ttcttcttcg tttaggttgt
      301 aaagtttata aaccaaagaa ttgattttat tttctaactc ttgggtgttt gcgtttttgt
      361 cttgctcttt ggcttttaaa atttcatcga ctaaatttat aagctcatcg actatgtttt
      421 gatttttaga atttattttt ggtataggga gtttttctat attgtattta taatttctaa
      481 atgctcctgt attacctaat ggtgtttgga tatcggcaag ataatatgta attggctttg
      541 aatttaggat tcccaataaa taacgattac ttgtggaaaa aaaatagttt gtatcttgca
      601 atagcatatc ttttggaata aatgaatgtt ctatatatcc aacactagcc cacactatct
      661 tttccctttc aaattcttga taataatttg ctccccatct ttgcaaacaa taccattcat
      721 aacgaattcc tgtttcttct ttatttcttt tagataatct ttctttatga gataacaagt
      781 gcttatataa gctcggatat tgttctttta aatcttgttc attttctagc attgtctttg
      841 gtttttcaac atttggaaaa tgccaaggta taaatatcac ccaaagtccc gcccactcgt
      901 aactatatct ttttatatcg cgtccgcgta gcattttgcg tatgagtttg gcggtgcgtt
      961 ctttttcggc ttcatctttg caatttgcta aaatttcatt tcttttttca gtggtgatga
     1021 taaaggcttc attatagcct gttaaaattc cacgatatat attaagtcct tgccattctt
     1081 taagcggagt tcctatgcgt tctatcttag cctttaaggc actagtattc tcatcgctaa
     1141 aagtgaagct ttctttgctt aaagaatttt gcgaaaattc tgcaaagtcc ttatataagc
     1201 caatgttata agcacaagtt tttaaaattt cattgcttag ggcaaggtat ttgaatttat
     1261 tatctttgct ttttgatttt tcaaaacaaa gtatggaagt atccactgta gcactatcaa
     1321 aaacttttat gccgtttaaa tcagtgtatt ctaaaaactt aacattttta agcaaaaatt
     1381 cacgcaaagc ttccccatat cctgcacgcg tgtatttgtt agaagtga
//
LOCUS       DARGEX010000164         1377 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.165, whole genome shotgun sequence.
ACCESSION   DARGEX010000164 DARGEX010000000
VERSION     DARGEX010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.165"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            86..1201
                     /locus_tag="SF010_001733"
     CDS             86..1201
                     /locus_tag="SF010_001733"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG8230612.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            1198..>1377
                     /locus_tag="SF010_001734"
     CDS             1198..>1377
                     /locus_tag="SF010_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8230613.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQ"
BASE COUNT          517 a          190 c          248 g          422 t
ORIGIN      
        1 ataaaatgat aaaatttagc tttttataag tgtataatat ggtaacatta taaaaaccaa
       61 caatattaaa aagaggaatg aaaaaatgag tgaaatgagc ctcattatgt tagcagctgg
      121 aaattctact cgttttaata caaaggtaaa aaaacaattt ttacgacttg gaaatgaccc
      181 tctttggctt tatgcaacaa aaaatttaag ctctttttat ccttttaaaa aaatagttgt
      241 tacctctagt aatatcactt atatgaaaaa atttactaaa aactatgaat tcatagaagg
      301 tggtgatacc agagcagaat ccttaaaaaa agccttagag ctcatagata gcgaatttgt
      361 tatggtaagt gatgtagcaa gggtattggt gagtaaaaat ttgtttgatc gtttgattga
      421 aaatttagat aaagcagatt gtattacccc tgctttaaaa gttgcagata caacactttt
      481 tgacaatgaa gccttgcaaa gagaaaaaat caaactcatt caaaccccgc aaatttctaa
      541 aaccaaattg cttaaaaaag ccttggatca aaacctagaa tttacagatg atagcacagc
      601 tatagctgca atgggtggaa aaatttggtt tgttgaaggt gaagaaaatg caagaaaact
      661 aacctttaaa gaagatctta aaaaacttga tttgcctaca cctagctttg aaatttttac
      721 tggcaatggt tttgatgtgc atgaatttgg agagaatcgc cctttgcttt tagcaggagt
      781 gcaaattcat cctactatgg ggcttaaagc acacagcgat ggagatgttt tggctcactc
      841 tttaaccgat gcgattttag gtgctgcagg acttggagat ataggagagc tttatcctga
      901 tactgatatg aaatttaaaa atgccaactc catggagctt ttaaaacaag cttatgataa
      961 agtcagagaa ataggttttg aactcattaa tatagacatt tgcgtcatgg cacaaagccc
     1021 taaacttaaa gactttaaac aagctatgca aagcaatata gctcatactt tagatttaga
     1081 tgaatttaga atcaatgtta aagccacaac aacggaaaaa ttgggtttta ttggaagaaa
     1141 agaaggtatg gcggtgctta gtaatgtaaa tttaaaatat tttgattgga caagattatg
     1201 aaagttttaa ttattgaaaa tgaaatttat ctagcgcaaa gcattagcat taaactaagt
     1261 gatgctggat atagctgtga aattattaac tcgtttgatg aatacaatgg tgaaaaatac
     1321 tatgacatta tactgctttc tacaaatact aataattttc taaaagccgt aggtcag
//
LOCUS       DARGEX010000165         1335 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.166, whole genome shotgun sequence.
ACCESSION   DARGEX010000165 DARGEX010000000
VERSION     DARGEX010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.166"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            19..>1335
                     /locus_tag="SF010_001735"
     CDS             19..>1335
                     /locus_tag="SF010_001735"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024398.1,HMM:NF024914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8230614.1"
                     /translation="MKRIENTLSYRIGNRIVKSKNIKDILILPYNLFKEYRNFKLRQK
                     NKNLLFQEKNKFKRNIEFRKNQIFECKIENLDLLKIACIMDEFTYESFKYECDLLQLS
                     LENWKNEIMHFKPSLLFIESAWQGKNSLWKLKISGFSIELQELIGYCKENHIPTIFWN
                     KEDPVHFNTFLPIACSVDFIFTTDIDCVSKYKFYAGHEDVYCLPFAAQTKMYNPIEEF
                     DRKDEFNFAGSYYLRYPQRQLDFDNLINAIKPYKNISIYDRNFNNPHSHYTFPNCYKD
                     MIIGNLPFNEIVKAYKGYKFGITINTVKQSQTMFARRAFELIACNTFVVSNFSRALRN
                     FFGDLVISSDNVNELKDKLKLACEDEMYCKKIKLNALRKVMKEHTYTDRLKFIASVVY
                     KKQFEYKYKFYLLVYVNSQEEYIKALDIFNFQKENKEACLLIYSDKE"
BASE COUNT          543 a          131 c          197 g          464 t
ORIGIN      
        1 aaacaaaaag atagcgaatt gaaaagaata gaaaatactt tatcatatag aataggaaat
       61 cgtatagtca aatctaaaaa tattaaagat attctaatcc ttccatataa tttatttaaa
      121 gaatatagga attttaaact aagacagaaa aataaaaatc tgttatttca agaaaaaaat
      181 aagtttaaaa gaaatataga gtttagaaaa aatcaaattt ttgaatgtaa aattgaaaac
      241 ttagatttat tgaaaattgc atgtataatg gatgaattta catatgaatc ctttaaatat
      301 gaatgtgatt tattacaatt aagtctagaa aattggaaaa atgaaattat gcactttaaa
      361 cccagtttac tatttataga gtcagcgtgg caaggaaaga attctttgtg gaaattaaag
      421 atttcaggat tttccataga gcttcaagag ttgattggat attgcaagga aaatcatatt
      481 cctactatat tttggaacaa agaagatcct gtacatttta atactttttt accaatagct
      541 tgttctgttg attttatttt tactacagat atcgactgtg tctcaaagta taaattttat
      601 gccggacatg aagatgtgta ttgtttacct tttgcagctc aaacaaaaat gtataatcct
      661 atagaagaat ttgatcgcaa agatgaattt aatttcgctg gatcatatta tttgcgatat
      721 cctcaaagac aattggactt tgacaatctt ataaatgcga taaaacctta taaaaatata
      781 agtatttatg atagaaattt taataatcct cattctcatt atacttttcc taattgttat
      841 aaagatatga ttataggaaa tttacctttt aatgagattg taaaagcata taagggttat
      901 aaatttggga taacaataaa tactgttaag caatctcaaa caatgtttgc tagaagagct
      961 tttgaactta tagcatgtaa tacatttgtt gtaagtaatt tttctagagc tttaagaaat
     1021 tttttcggag atttagtgat atcatctgac aatgtaaatg agttaaaaga taaattaaag
     1081 ttagcatgtg aagatgaaat gtattgcaag aaaataaaat taaatgcttt aagaaaagta
     1141 atgaaagagc atacatatac agatagatta aaatttatag cttctgttgt ttataaaaaa
     1201 caatttgaat ataagtacaa attttattta ttggtgtatg taaattcgca agaagaatat
     1261 attaaagcat tggatatttt taatttccaa aaagaaaaca aagaagcttg tttgttgatt
     1321 tatagtgata aagaa
//
LOCUS       DARGEX010000166         1310 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.167, whole genome shotgun sequence.
ACCESSION   DARGEX010000166 DARGEX010000000
VERSION     DARGEX010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.167"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            131..1195
                     /locus_tag="SF010_001736"
     CDS             131..1195
                     /locus_tag="SF010_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8230615.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT          520 a          169 c          191 g          430 t
ORIGIN      
        1 aaatatttca atctttttgc cttgcatata aaaacaaact ttttcctaaa aaagcttttt
       61 tttactaagt taatactaaa ataccttttc tagttaaaaa gctaaaattt tagatttagg
      121 aaaagttttt atgaaatacc ctttagattg tgaagaaaat tttgaaaaat cattcttatt
      181 ttggttagca aaatatgtaa aatttaaact caactcacta tctaacaaag agttaaaaaa
      241 tccacaagct ttagcagaag ttaattttgc tcttacaaaa ggtgtaaaaa atattgatga
      301 acttgacgct ctagcaaaaa aagcaagaaa tgctggttta agtggagtta atacttattt
      361 taatccttta aaaaaagtat ttgaatattt aaatttttat aagctttact ctttaaaaca
      421 gattgatgaa gaactcattg tagaagtttt agcaagtata acaggtgctt tatcagatgc
      481 aagcaaaaaa aattaccgta ttgctgtgat taattttttt gattttttag acaagcaaaa
      541 tgaagaagat gaaaaagcac atattttcga tatcaatctt aaaaactggg caggtatagc
      601 aggttctaaa ggggtaaaat tacctgaatt tatgagtgaa gaagagctta aaaaatttct
      661 tgatgctatt gaaaatgcag attttaaaaa caataccata cgcaataaac ttattattaa
      721 aatcatcatt tttacaggca tacgggtaag tgaagctatc aatatcaaaa tgggtgatat
      781 tagcgaagaa aacgatcttt atatcataag aataagagct aaaggcaata aatatcgtgt
      841 tgtaatgata aaaaaagaac ttatttacga tttgcttaaa aatgtaagta ttaattatat
      901 gagtaaagac gccctacttt ttgtcaataa aaaaggcact ccactgactc aatcttatgt
      961 tagtcgcata gtagaacagc ttttatttcg tgcaggaatt cgcaaacaaa aaaatggtgc
     1021 tcatatgttg cgtcatactt ttgccaccct gctttataaa aagcaaaaag atttagtttt
     1081 agttcaagaa gctttagggc atgcaagttt aaatacctca agaatttaca ctcattttga
     1141 taatgataaa ttaaaacttg ccgcacaggt tgcaaaggaa ttaagtgact cttgaaaact
     1201 atgctatttt tggtaaatat ttttaccatg atttaaaaca cactttaaaa gcctttaacc
     1261 acaaagaaag taaaaaatgc tttaaattta tagaaaaata taaaaatgat
//
LOCUS       DARGEX010000167         1303 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.168, whole genome shotgun sequence.
ACCESSION   DARGEX010000167 DARGEX010000000
VERSION     DARGEX010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.168"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            87..641
                     /locus_tag="SF010_001737"
     CDS             87..641
                     /locus_tag="SF010_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG8230616.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLTKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            658..>1303
                     /locus_tag="SF010_001738"
     CDS             658..>1303
                     /locus_tag="SF010_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEG8230617.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHE"
BASE COUNT          504 a          137 c          231 g          431 t
ORIGIN      
        1 ttaaaaataa gctttatttt tctttatata tgttagaatc atgtgacaag aaaaataaaa
       61 tttcaataaa ttaaggggag aagaaaatga agctcatact cataggatct tcaacaggtg
      121 gtcctaatca gcttaaattt cttttaaagg atattgatgt aaaaaatact tgtgtagtta
      181 tagctcagca catgagtgcc agttttattc catcttttgt ggggcaattt aataaagaag
      241 cttttagtga agtgtgctta ttgaacgata aagagatatt aagcaataaa atttatattt
      301 gccctaaaaa tactatttta tctggaaatt taaatattgt agccgcttgg caagatgtgg
      361 cttcaagctt taaaccgagt gtggatttac tttttcattc cgctgtttct ttgacaaaaa
      421 caaataaaat acttgctatt attttaacgg gcatgggaga tgatggcgca aaaggtttat
      481 ttgagcttta taaaacagga gttagatgtt tatgtgagaa tgaagcagat agcgtcgttt
      541 atggtatgcc aaaaagagca aaagatatga atccgcattt aaaacctatg agcttaaaag
      601 aaattaaaaa agaaattgta aattttattg atcaggatta ataataagga aaattgcatg
      661 gaaaaaaaaa taactcctag cgaattggaa cttaatgaat ttataaaaat tatcaacgaa
      721 atgagtggta ttgatttaac cgataaaaaa aatatactag ctttaaagtt gaataaattt
      781 cttgaaggaa ctaatactaa aaatttttcc gaatttttgg gaaaattaaa aagcaataga
      841 caacttaaac aagaaacttt agattttgta accataggtg aaacttattt tttaagagaa
      901 ttggctcaat tgaaagaaat aatttattat gccaaaagct tagaaaagag agtaaatatc
      961 ctaagcgccc cttgttcaag tggagaagaa gtatattctt tggcattatt ggctgcgcag
     1021 aattttatta aagatatgta tattttaggc gttgatatta attcaagtgt gattgaaaaa
     1081 gcaaaacttg gaaaatatca aggaagaact ttacagcgat tgagcgagag tgaaaaaaga
     1141 aggttttttt tagaaagcga agataaattt tatactatta ataaaaatga gctttgtact
     1201 tgtaaatttg aactttgcaa tgtttttgaa gaaaaatttt caagattggg aaaatttgat
     1261 attatagctt ctagaaatat gattatttat tttgatcatg aat
//
LOCUS       DARGEX010000168         1300 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.169, whole genome shotgun sequence.
ACCESSION   DARGEX010000168 DARGEX010000000
VERSION     DARGEX010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.169"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            36..641
                     /locus_tag="SF010_001739"
     CDS             36..641
                     /locus_tag="SF010_001739"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230618.1"
                     /translation="MQSYLDYFEKSNEWVRKEFFPFKERLFQKQDLSNYKENYKLKEM
                     KSEYWDKIAEFILDVVKTKDKIIEGKDIIIQSKIMQFNQIQTKLFFQVKYGTAKSRIQ
                     NQLSYKLGQTMIVNSKSFLGYLIMPIALLSTVVSYRQYQKIYQEKIKKDFSLKLPSLK
                     QYPDYQEAIKLKNHISYKLGEALIKAHKNWYGGGGVYQIFI"
     gene            701..>1300
                     /locus_tag="SF010_001740"
     CDS             701..>1300
                     /locus_tag="SF010_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEG8230619.1"
                     /translation="MNNVLKIALIADELTYASLKEEDGVVLRNVTPINYKVLFYFWKP
                     DFLFVESAWHGCKNKWKYQIASYPDYPKRNNKKLQKCVDFAKTLNIPTVFWNKEDHVH
                     FDRFIESAKLFDFIFTVDENCISKYKSYVGENSFVGVLPFAVQSKFHNFTGFNFTLNK
                     ANFVGSYSRHIHEKRRFYQDMMFKLSSEINNLDVFDRNSN"
BASE COUNT          515 a          133 c          196 g          456 t
ORIGIN      
        1 gtttgtttct aaaatttaaa cctcctaaaa aaataatgca atcttatctt gattattttg
       61 aaaaatcaaa cgaatgggta agaaaagaat tttttccttt taaagaaaga ttattccaaa
      121 agcaggattt aagtaattat aaagaaaatt ataagcttaa agaaatgaag tcagagtatt
      181 gggataaaat agctgaattt atattagatg tagtaaaaac taaagataaa attatagaag
      241 gaaaagacat aattatacag tctaaaataa tgcaattcaa ccagattcaa actaaattat
      301 tttttcaagt taaatatggc actgctaaat ctagaattca aaatcaatta tcttataaac
      361 tagggcaaac tatgatagta aattctaaat ctttcctagg ttatttaata atgcctatag
      421 cattgttaag tacggtagta tcatacagac aatatcagaa aatttatcaa gagaaaataa
      481 aaaaagattt ttccctaaaa ttaccttctt tgaaacaata tcctgattat caagaagcta
      541 ttaagcttaa aaatcatatt tcttataaat taggagaggc tcttataaaa gctcataaaa
      601 attggtatgg tggggggggg gtatatcaaa tttttatttg aaatatacaa gttgagaaaa
      661 aaatagtata attttattaa aaaatatttt ggtgttatgc gtgaataatg tattaaaaat
      721 agctttaata gcagatgagt taacctatgc ttctttaaaa gaagaagatg gggttgtttt
      781 aagaaatgta accccaatta attataaagt gttgttttat ttttggaaac ctgacttttt
      841 gtttgttgaa tcagcttggc atggttgcaa aaataaatgg aagtatcaaa ttgcctcata
      901 tcctgattat ccaaaaagaa ataataaaaa actacaaaaa tgcgtagatt ttgccaaaac
      961 attaaatatt ccgacggtat tttggaataa agaagatcat gtgcattttg atagatttat
     1021 agaaagtgca aaattatttg attttatttt taccgttgat gaaaactgta tatcaaagta
     1081 taagtcttat gtaggagaaa attcttttgt gggtgttttg ccttttgctg ttcagtctaa
     1141 atttcataat tttactggat ttaattttac tttaaataag gcaaattttg ttggaagtta
     1201 ttcaagacat atacatgaaa aaagaagatt ttatcaagat atgatgttta aattatcttc
     1261 tgaaattaat aatcttgatg tttttgatag aaattcaaat
//
LOCUS       DARGEX010000169         1289 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.170, whole genome shotgun sequence.
ACCESSION   DARGEX010000169 DARGEX010000000
VERSION     DARGEX010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.170"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1201)
                     /locus_tag="SF010_001741"
     CDS             complement(<1..1201)
                     /locus_tag="SF010_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8230620.1"
                     /translation="MFRLSSVSSKLLLSVAISVILAIALMIAIVSFQVASYSEKEAKD
                     TILLSSKRYVNYIQGMLNEEVTLTKGVATSLNEMFQNNDHIDIDLIESLIKNTFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIAEKSGGITTISTPNNFS
                     QLNLIQNIEQNAKYGDKDSVFVDSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     IDLLEISETILDPKFDFFEGDLRFLMNDQGIIAIHKNKNAILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDLSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     IIISVAIIALIAILAVVYFFIRKIIGSRIPLILKSLENFFRFLNHEKIEVQTIEIKAN
                     DELGKMGK"
BASE COUNT          476 a          183 c          157 g          473 t
ORIGIN      
        1 ttttacccat tttgcccaat tcatcattag ctttaatttc aattgtctga acttctattt
       61 tttcatgatt taaaaagcga aagaaatttt ccaaagactt aagtataaga ggaattctag
      121 agcctatgat ttttcttata aaaaagtaca caacagccaa aatagcaatt agtgctatta
      181 tagcaacact aataataata tattgtagtt tatataaagg ggctaaaact gattttttag
      241 gagctgttac aattacactc caatgactag aattacctaa agtgctaaat gaagagatac
      301 tagcataact aagatctcct gttgaggcaa tataattatc taagatttca tctttatggt
      361 ttttaactgc ctcaacaatt aattgagcag attgatcttt gttaatatca aataaagttt
      421 ttaaaattgc atttttattt ttatgaatag caataatacc ctgatcgttc attaagaatc
      481 ttagatcccc ttcaaaaaag tcgaattttg gatccaatat agtctcggaa atttctagta
      541 aatctatagt atatcctata actccaataa atttgccctt attgttaaaa ataggcatac
      601 cgaaatttat acctaaaaat tcattattat cataattaag ttttctagga gaatctacaa
      661 aaacagagtc tttatctcca tattttgcat tttgttcgat attttgtatt agatttaatt
      721 gagagaaatt gtttggagtt gaaatagtag ttattccacc agatttttct gctatttgat
      781 caaaaaatat catagaaaaa gtttttccat ctgggctaat atatttttta tctacattct
      841 gcatatcact taatacagta gtatctttta aatagagaaa tgtatatgct gcatagtgac
      901 tactatcaaa agtatttttt ataagacttt caattaaatc gatatctata tgatcattat
      961 tttgaaacat ttcatttaac gatgtagcaa ctcctttggt tagtgtgact tcttcattta
     1021 acataccttg tatataattc acatatcttt ttgaagataa taaaatagta tctttggctt
     1081 ctttttctga atatgaagca acttgaaaag aaacaatagc aatcataaga gctatagcta
     1141 aaataacact aatagcaact gataataaga gttttgaact aacgctcgat agtctaaaca
     1201 tgaaaaacct cacataaatt ttttactaaa aataaagctc gttagcatat caaaaaaaat
     1261 aaaattaata taaaattatt ttttataga
//
LOCUS       DARGEX010000170         1259 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.171, whole genome shotgun sequence.
ACCESSION   DARGEX010000170 DARGEX010000000
VERSION     DARGEX010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.171"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            174..397
                     /locus_tag="SF010_001742"
                     /pseudo
     CDS             174..397
                     /locus_tag="SF010_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861573.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            397..>1259
                     /locus_tag="SF010_001743"
     CDS             397..>1259
                     /locus_tag="SF010_001743"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230621.1"
                     /translation="MEALNQKNSLNIRLLSSNNILLHNQEFKLYEIAQGNKNEIKTIF
                     TTNRMGEAHLNASEIFSKEAQSFELILNQSSVYKNKPIYNHRFLLRSYEYGHWCEIKF
                     ERKADKGSINSIRLKSKEFTLENNEKIVRNFYTFGDIVEFEAIYEDTKIKEEQIKWGY
                     VFIQDKNTLDKLNKNQLTNDKKESSLFDEEILKDCFYIEKEEDKALLSSSIIYRHLEN
                     NKAYCGKHLSLQLPNPKDTQEQKTLLVFAYKEIPNYNASYLIRINDYPQITIDCTLAE
                     TLRAHTNKDEIS"
BASE COUNT          523 a          169 c          196 g          371 t
ORIGIN      
        1 gtgctaatca aaacactatt atccataagg atgagataag aaatgtgaag ggagaaaata
       61 aattattaat agaaaagtct ttaacccaaa caatagaaaa agaatttttc cttaatattc
      121 atcaaaattt atccgcccac atacaagata atacatcctt aaagtccaat tccatgcaga
      181 caaaggtaga ggaacaatat tctttagaat cagataattc aacttttgac tttcaaacag
      241 attgtgaagt aaaacaggca gtcaaatcct ccatcaagta ggtgatactc aaattgttac
      301 taagggagat tgtgttataa ttaaagcagg tggagttgaa gtaattatag attctaatgg
      361 gcttgtagtt agaggtggag agcttaggac agagtaatgg aagcacttaa tcaaaaaaat
      421 agtttaaata ttaggctttt aagttctaat aatattcttc tgcataatca agaatttaag
      481 ctttatgaaa tagcacaggg caataaaaat gaaatcaaga ctatttttac aaccaataga
      541 atgggggaag ctcatttaaa tgctagtgaa atttttagta aagaagcaca aagctttgaa
      601 ttaattttaa accaatctag tgtttataaa aacaaaccca tctataatca tagattttta
      661 ttaagaagtt atgagtatgg gcattggtgt gaaataaaat ttgaaagaaa ggcagataaa
      721 ggctctataa actctattag gctaaaatcc aaagaattta ccttagaaaa taatgaaaaa
      781 atagtgcgta atttctatac ttttggcgat atagtagaat ttgaagctat ttatgaggat
      841 acaaaaatca aagaagagca aattaaatgg ggttatgttt ttattcagga taaaaacacc
      901 ttagataagt taaacaaaaa ccaattaact aatgacaaaa aggaaagttc tttatttgat
      961 gaagaaattt taaaagattg tttttatatt gaaaaagaag aagataaagc cctattatct
     1021 tcttctatca tttatagaca tttagaaaac aacaaagctt attgtggaaa acatcttagt
     1081 ttgcaactac caaaccctaa agacacacaa gagcaaaaaa cactattagt ctttgcttat
     1141 aaagaaatac ccaattataa tgcctcttat cttataagaa ttaatgatta tccacaaatt
     1201 accattgatt gcactctagc agaaacacta agggcacata caaacaaaga tgaaatctc
//
LOCUS       DARGEX010000171         1254 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.172, whole genome shotgun sequence.
ACCESSION   DARGEX010000171 DARGEX010000000
VERSION     DARGEX010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.172"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..848
                     /locus_tag="SF010_001744"
     CDS             <1..848
                     /locus_tag="SF010_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230622.1"
                     /translation="PKYEKLYRIVDDNKHNLRSSLFHNEWGMAAGILGDYKYLANDMF
                     QNGFNARFIQATILYIQLSGGSSILDKPHLLGAVYGYADIAVGSGLVGVHKNPLREQE
                     IKTLAKTLKPDEFGMLPFIDEIMGVDWVIDYNKYRIARDEFGSMYKALRSDIVEGKIK
                     DPRDIDSTYESRREFDHHRGGYYNGMVNGYGTDTPNDWSEERAQLFNDTLILHAKLAA
                     LTPPQGYPNAPYYFTPENLEWYYKRHKLDRLLDPRIPAIYRYNFPQELRAKIRAYAKE
                     HNIKE"
     gene            871..>1254
                     /locus_tag="SF010_001745"
     CDS             871..>1254
                     /locus_tag="SF010_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230623.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSDTHYKNPLLQYA
                     ITQEQEQENIVFALKNNENLNASFAN"
BASE COUNT          487 a          157 c          209 g          401 t
ORIGIN      
        1 atcctaaata tgaaaaatta tatagaatag tagatgataa taaacataat ctaagatcaa
       61 gtttatttca taatgaatgg ggtatggcag caggaatatt aggtgattat aaatacctag
      121 ctaatgatat gtttcaaaat ggttttaatg caagatttat acaagctact atactttata
      181 tacaactaag tggaggaagt agtatattag ataaacctca tttattaggt gctgtttatg
      241 gttatgcaga tattgctgta ggaagtggtt tagtaggagt gcataaaaat cctttaagag
      301 aacaagagat taaaacctta gctaagactt taaaacctga tgaatttggt atgcttcctt
      361 ttatagatga gattatggga gtagattggg tgattgatta taataaatat agaattgctc
      421 gcgatgaatt tggaagtatg tataaagcct taagaagtga tatagttgag ggcaaaataa
      481 aagatccaag ggatatagat tctacttatg aaagcagaag agaatttgat catcataggg
      541 gagggtatta taatggcatg gtaaatggct atggaacaga tacacctaat gattggagtg
      601 aagaaagagc tcaacttttt aatgatactt taatattaca tgccaaatta gcagccctca
      661 ctcctcctca aggctatcct aatgcacctt attattttac ccctgaaaat ctagaatggt
      721 attataaaag acataagctt gatagacttc ttgatccaag aattcctgct atatatagat
      781 ataattttcc gcaagaactt cgagctaaga taagagctta tgctaaagag cataatataa
      841 aagagtaaac cacaaaagaa aggaaaaaca atgcaaaaaa tacttcaaat cgatttagaa
      901 aaaagaaaag ctttagagaa tttcaaaaat ctagctttat taggattagg tggaacaatg
      961 cttttaaatt taaaagaaca agctttggat tttagtcaag aattaactta tataaatact
     1021 tatgataagt atttaaattt aaagcttgat tctttttata tcccttctac acttttatct
     1081 ttgcttcaat taactaagaa aagcaaagaa gctttttata tcaatgtttt aatcaatagc
     1141 gatacacatt ataaaaatcc tttattacaa tatgctatta cccaagaaca agaacaagaa
     1201 aatatcgttt ttgctttaaa aaataatgaa aatcttaatg cttcttttgc aaat
//
LOCUS       DARGEX010000172         1220 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.173, whole genome shotgun sequence.
ACCESSION   DARGEX010000172 DARGEX010000000
VERSION     DARGEX010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.173"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1121)
                     /locus_tag="SF010_001746"
     CDS             complement(<1..1121)
                     /locus_tag="SF010_001746"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230624.1"
                     /translation="MGLVFKGIVGVDKIDRSEYYQDLYQKINFKNTYNGSYYSIVDNN
                     LDIDNIINEVKNLNKSIDTILLEFNYNHVLRLFELFPIFERKFFFSSFYGYFNNLTKA
                     KITYDNKINITIHFRLGDEYPLFVNQDTVVNPSMLLRSRFDFAYYNIKNKKGYRVIQQ
                     RFNALGEIELYIKKLRQFYKDSVKINFISDGMDLGFNIVNREDIRNKLKKLGIKVDDE
                     FLQRSTEQSIFKLNNLKKYCDEFIVGESVDKFIQTKNLLLRSNIIVSSARLFCWGVLS
                     AFKYDFTFKQVLFMNNSGSYYDIIDNKNVKIEQYKNFNYCINNVFKYINHFLNKDIID
                     KIENHFNESAKIRIQNQLSYKLGQAMIVSSKSILGYIRMP"
BASE COUNT          460 a          178 c          105 g          477 t
ORIGIN      
        1 ggcattctta tatagcctaa tatagattta gagctaacta tcatagcttg acctagttta
       61 tatgagagct gattttgaat gcgaatttta gcgctttcat taaaatgatt ttcgatttta
      121 tcgataatat ctttatttaa aaaatgattt atatatttaa aaacattatt tatgcagtaa
      181 ttaaaatttt tatattgttc aatttttaca tttttattat ctataatatc ataataactg
      241 ccactattat tcataaataa aacttgttta aacgtaaaat cgtatttaaa agcagataaa
      301 acaccccagc aaaataatct tgcagagcta actattatat tagatcttaa taaaagattt
      361 ttggtttgta taaatttatc aacactctct ccaactataa attcatcaca atattttttt
      421 aaattattta atttaaaaat ggattgctcg gtacttcttt gcaaaaactc atcatcaact
      481 tttattccta atttctttaa cttatttctt atatcttctc tattgacaat attaaatcct
      541 aaatccattc catctgatat aaaatttatt ttaacactgt ctttgtaaaa ttgtcttaat
      601 tttttaatat aaagttcaat ttcaccaagc gcattaaatc tttgctgaat taccctatag
      661 ccttttttgt tcttaatatt ataataagca aaatcaaatc gagatcgcaa aagcatacta
      721 ggattaacaa cagtatcttg gtttacaaat aatggatact catctcctaa tctaaaatgt
      781 attgtaatat taattttatt atcataagta attttagctt ttgttaaatt attaaaataa
      841 ccataaaaac tactaaaaaa aaatttcctt tcaaaaattg ggaataattc aaacagtctc
      901 aacacatgat tataattaaa ctctaaaagt attgtatcaa tagatttatt taaattttta
      961 acctcattga taatattatc aatatctaag ttattatcca caatagaata atagcttcca
     1021 ttatatgtat ttttaaagtt tatcttttga tataaatctt gataatattc gcttctatca
     1081 attttatcta ctccaacaat acccttaaaa actaaaccca aagaatctaa aaacgacgag
     1141 acaacacaag cacttaaaaa ggtatctgta aaacctacat tatgtggttt tattacataa
     1201 tattttatat tactgctaga
//
LOCUS       DARGEX010000173         1200 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.174, whole genome shotgun sequence.
ACCESSION   DARGEX010000173 DARGEX010000000
VERSION     DARGEX010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.174"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            129..>1200
                     /locus_tag="SF010_001747"
     CDS             129..>1200
                     /locus_tag="SF010_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG8230625.1"
                     /translation="MQKMNSGKSVGVSVKLTLWVGILVVLILAITSTVSYFDAKNHTY
                     ELLKENQLKTMDDVKVTFENYSKSKQKAIEVLAYESAKKLEDENISLLLDSFKKAFDF
                     DIVFIAFDKNNKMLLSNGTILDKKSNFDITKQIWYQEAKNNKGITITQPYKSPIDQEI
                     GITYVFPIYKNNQLIAFVGGDYNLDKFSKDVLSLGHSSTTYAAVYDSEGRIIFHEVLD
                     RILTKNTLSVNIANAIKENPEYIDPNKRDILFPVFDDKGIKYETMCDTSSNGLYRICA
                     VTLDSNYTSAVNSILMKQAIVGIIAIIIALILIRFLISRSLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISN"
BASE COUNT          462 a          168 c          165 g          405 t
ORIGIN      
        1 aaaaagtata aaaaatacta aaatttttaa gaatatttat gtaaaaaagt tcatttttat
       61 gcatttcttt ctctatattt ctgctataat aataatttta tttccaaaat ataaatatag
      121 gagttataat gcaaaaaatg aattcaggca aatccgttgg agtttcagtc aaacttacgc
      181 tgtgggttgg aattttagtt gtattaattt tagcaatcac aagtaccgtt agttactttg
      241 atgccaaaaa tcacacatat gaattactaa aagaaaatca attaaaaact atggatgatg
      301 ttaaagtaac ttttgaaaac tattccaaaa gcaagcaaaa agctatagag gttctagcat
      361 atgaaagtgc taaaaaatta gaagatgaaa atatttcact gcttctagat tcttttaaga
      421 aggcgtttga ttttgatatt gtttttattg cgtttgataa aaacaacaaa atgcttttgt
      481 caaatggaac aattttagat aaaaaatcaa attttgacat tacaaaacaa atttggtatc
      541 aagaagcaaa aaataacaaa ggcatcacaa taactcaacc atataaatcc cctatagatc
      601 aagagattgg tataacttat gttttcccta tttataaaaa taatcaactt atagctttcg
      661 ttggaggcga ttacaatcta gataaatttt ccaaagatgt attatcttta ggacactcat
      721 caactactta tgctgctgtt tatgactctg aaggaagaat tatttttcac gaagtgcttg
      781 atagaatttt aacaaaaaac actttaagcg ttaatattgc taacgccata aaagaaaacc
      841 ctgaatatat agatccaaat aagagagata ttctttttcc tgtatttgat gataaaggta
      901 tcaaatatga aacaatgtgc gatacaagtt ccaatggatt atatcgtatt tgtgctgtaa
      961 ctttagatag taactatact tccgctgtta attccatttt aatgaaacaa gctatagtcg
     1021 gtattatagc tataatcata gctttaatct tgattagatt tttaatcagc agaagcctct
     1081 ccccacttgc agctatccaa acaggtttaa cttcattctt tgattttatc aactataaaa
     1141 caaaaaatgt ttctactata gaagtaaaaa gcaatgatga atttggacaa atctcaaatg
//
LOCUS       DARGEX010000174         1089 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.175, whole genome shotgun sequence.
ACCESSION   DARGEX010000174 DARGEX010000000
VERSION     DARGEX010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.175"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>1089)
                     /locus_tag="SF010_001748"
     CDS             complement(<1..>1089)
                     /locus_tag="SF010_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8230626.1"
                     /translation="GENKDNKDKEALKALSFMQNFIPACFFSYQIIGDSKAIPKNVLE
                     DLKNRYGYEGKNYKSIFKKEVYINCNCLERLNFSHCEFESKVSLRFLKDNKYKEFHNG
                     VNFSNCIFKNEVDFSYFVSGAPLPNNKYYNNAQNTLFKDCIFENKVDFHNSKITNNIY
                     FNNAHFKDYVDFHECEFEKTASFYGVRFDKAPNFSACYFKEPKAVNLINVDIDKLDFK
                     SLEQYIKDKYQDETYENKQELTEEQRNNNCKLKCAKHLKDSFRVIKDVLITQNNTLEA
                     QEWHKLELYAKEKENHINLNVKEREKNTDIFKNILIWFNCVLLNVYRNTSDHHNDFLK
                     ILNFTIGMIALYGVFFYLLLEVYMYLDI"
BASE COUNT          388 a          162 c          101 g          438 t
ORIGIN      
        1 taatatctaa atacatatat acttctaaca atagataaaa aaacactcca tataaagcaa
       61 tcatccctat agtaaaattc aaaattttta aaaaatcatt atgatgatca ctagtatttc
      121 tatacacatt caacaaaaca caattaaacc atattaatat attcttaaat atatcagtat
      181 ttttttctct ttccttaaca tttagattta tgtgattttc tttctctttc gcataaagtt
      241 ctaatttatg ccattcttga gcttctaagg tattattttg agtgattaaa acatctttta
      301 tgactctgaa agaatctttt aaatgtttgg cacattttaa tttacaatta ttattacgct
      361 gttcttctgt taattcttgc ttattttcat acgtctcatc ttgatattta tcttttatat
      421 attgttccaa tgatttaaaa tctagcttat ctatatcgac attgattaaa tttacagctt
      481 ttggttcttt aaaataacaa gcactgaaat ttggagcttt atcaaatctc accccataaa
      541 aactagctgt tttttcaaat tcacactcgt gaaaatcaac ataatcttta aagtgggcat
      601 tgttaaaata aatattattg gtaattttag aattatggaa atcaacctta ttctcaaaaa
      661 tacaatcttt aaataatgta ttttgtgcat tattatagta tttattatta ggcaatggtg
      721 cacctgatac aaaataactg aaatcaactt catttttaaa gatacaattt gaaaaattaa
      781 ctccattgtg aaattcttta tatttattat cttttaaaaa acgcaaagat actttggatt
      841 caaattcgca atgagaaaaa tttaatcttt ctaagcaatt acaatttata taaacttctt
      901 tcttaaaaat acttttataa tttttccctt cataaccata tctatttttt aaatcctcaa
      961 gaacattttt aggaatagct ttggaatctc ctataatttg ataagaaaaa aaacaagcag
     1021 gaataaaatt ttgcataaat gagagcgcct ttagtgcttc tttatcttta ttgtctttat
     1081 tttctccta
//
LOCUS       DARGEX010000175         1068 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.176, whole genome shotgun sequence.
ACCESSION   DARGEX010000175 DARGEX010000000
VERSION     DARGEX010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.176"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..205)
                     /locus_tag="SF010_001749"
     CDS             complement(<1..205)
                     /locus_tag="SF010_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230627.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVV"
     gene            complement(189..>1068)
                     /locus_tag="SF010_001750"
     CDS             complement(189..>1068)
                     /locus_tag="SF010_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG8230628.1"
                     /translation="KAIILITDLNLNLNQCEEFEKICKEKNIKIFLLDHHQSGEECAQ
                     KYSWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFL
                     GLIANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKN
                     DDTLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFF
                     IDVSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNHIKAQIID
                     LIKSKELKKENNESKQ"
BASE COUNT          363 a          183 c          109 g          413 t
ORIGIN      
        1 ccacaacttc taaaatttca tcaacccctt ctttgttgga attttcgagc acattatcta
       61 tattatcaat ataagcttct attgcatttt ctaatttttc tcttttaact ccagcgtata
      121 aaagcatagc ttctaaaact atgctaagct catattgtaa atcttctagt tcatttttta
      181 aggttttatt attgttttga ttcattgttt tcctttttaa gttctttgct tttaattaaa
      241 tcaataattt gagccttaat atgattataa tttgctccat ctttaaatgt cgcaaaaagt
      301 ccaccactag catttttatg tccaccgcca cctactaaat ttttagccat taaacttaca
      361 tctatttttc catttgcacg aaaacttaag gtttttctag aactaacatc aataaaaaag
      421 tcataatcag gattttttac taaaaaatca tttccaataa cagaagtatt gcctatattt
      481 gaagttaaga tgcctttatg accttcatat tctatgctga aattttcttt tagctcactt
      541 agtttttcaa ctacaaaata agaaattaaa ttagaaagag tatcatcatt ttttctggca
      601 aaataatcct tttttataaa atgagtagca ttatcgagta aaatattcgc attttctttt
      661 cctataaatt tccaagcctt atcaagcaag aaaaacatat aatcgatttg agattcttta
      721 aacatcacgc gatttatttc ttttgcattg gcaatcaagc ctaaaaaaac ctttccaagt
      781 tcaaaatttt catcctcgct tagccaaata tcaacagcat taaccacatc aacaaatttt
      841 gaaagttcta aaacaggagt gcagatttta gagaaaaaat cataaacgat tttagttgca
      901 catcttttag aatcaagtaa ataccaagaa tatttttgag cacattcttc gccactttga
      961 tgatgatcaa gaagaaaaat tttaatattt ttctctttgc aaattttttc aaattcttca
     1021 cattgattta aatttaaatt taaatctgtt attagaataa tagctttt
//
LOCUS       DARGEX010000176         1054 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.177, whole genome shotgun sequence.
ACCESSION   DARGEX010000176 DARGEX010000000
VERSION     DARGEX010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.177"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..221
                     /locus_tag="SF010_001751"
     CDS             <1..221
                     /locus_tag="SF010_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230629.1"
                     /translation="NNIPLIKSTRLINILALSLIAKELYTPIFEEMEENIFIKYIEAA
                     IQNNIKEDKILFENLTIKALEKYIKDFE"
     gene            complement(225..>1054)
                     /locus_tag="SF010_001752"
     CDS             complement(225..>1054)
                     /locus_tag="SF010_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230630.1"
                     /translation="NEEYAYIYDEVSSHRGTLKSYSFFNEWELSALLLGNIKASPTAA
                     VGFKARQQQALFLQAQLGDKNAFKSLGLAVLCSNSFLTGQHWNKLRAKMIYDLHDHHY
                     ESLLDEFGMLPFLDEIIGVDWVIDLNRYKFALDEEGRIIWALYDDIEKGKLKDPRDVD
                     STSESRKEFDHYMDGYVNGMETRFDADIPNDWGDRQATLFKDTLVLSAKLAALTPPQG
                     YPNAPRYYSPERLEIIYKRHKLDKLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
BASE COUNT          365 a          184 c          144 g          361 t
ORIGIN      
        1 ttaataatat acccttaatc aaatccacaa gattgatcaa tattttagcc cttagcctaa
       61 tcgcaaaaga attatatact ccaatatttg aagaaatgga agaaaatata tttattaaat
      121 atattgaagc tgccatacaa aacaatatca aagaagataa gattcttttt gaaaatctta
      181 ccatcaaagc attggaaaag tatattaaag attttgagtg atttttactc tttgatatta
      241 tgctctttag cataagctct tatcttagct cgaagttctt gcggaaaatt atatctataa
      301 atagcaggaa ttcttgggtc aagaagttta tcaagcttat gtcttttata aataatttct
      361 agtctttcag ggctatagta tcttggagca ttaggatagc cttgaggagg agttaaggct
      421 gcgagtttgg cgcttaatac tagagtatct ttgaataaag tggcttgtcg atcaccccaa
      481 tcatttggaa tatcagcatc gaatctagtt tccattccat ttacatatcc atccatataa
      541 tgatcaaatt ctttcctgct ttcagaagta gaatccacat ctcttggatc ttttaattta
      601 cctttttcaa tatcatcata taaagcccaa atgattctac cttcttcatc aagagcaaat
      661 ttatatcgat ttaaatcaat cacccaatct actcctataa tctcatctaa aaaaggaagc
      721 ataccaaatt catctaataa actctcataa tgatgatcgt gtaaatcata aatcattttt
      781 gctctaagct tattccaatg ttgccctgta agaaaagaat tagaacacaa tactgctaaa
      841 cctaaacttt taaaagcatt tttatctcca agttgagctt gtaagaacaa tgcttgttgt
      901 tgtcttgctt taaatcctac agcagctgta ggactagctt taatatttcc caaaagtaaa
      961 gcagataatt cccattcatt aaagaaagaa taagatttta atgttccacg atgagaactt
     1021 acttcatcgt aaatataggc gtattcttca ttga
//
LOCUS       DARGEX010000177          989 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.178, whole genome shotgun sequence.
ACCESSION   DARGEX010000177 DARGEX010000000
VERSION     DARGEX010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.178"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>989
                     /locus_tag="SF010_001753"
     CDS             <1..>989
                     /locus_tag="SF010_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional anthranilate synthase component I
                     family protein/class IV aminotransferase"
                     /protein_id="HEG8230631.1"
                     /translation="NFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDNYK
                     ENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETREI
                     LSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICDLL
                     RNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSITG
                     APKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSGLV
                     WDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLINSALK"
BASE COUNT          409 a          135 c          125 g          320 t
ORIGIN      
        1 aaatttcaca agcaaaaagg cttatttgtc tgtatttgct tttaaaaaaa gaaaaaaatt
       61 tcaaaaagaa gatatcgatg aagaaaaatt tattcctgaa tttataaatt ttttagatca
      121 agataattac aaagaaaatt tcatcaaggt taaagaggca atctccaaag gaagagttta
      181 tcaaatcaac cttactcaaa attttaaatt tcatagcaaa atggattctt ttgaactttt
      241 taaacttttg ctttctagac aagatactga atttaaagct tttataaaag atgaaacaag
      301 agaaatttta tccttttctc ctgaactttt cttcaaaacc aaaaaaagaa aaatatttac
      361 aaaacctatg aaaggcacaa ttaagcgtga taaagatcct ataaaagatg aagaaaataa
      421 aattttcttg caaaatgata caaaaaatct gagtgaaaat gttatgattt gtgatctttt
      481 acgcaacgat ctttcaaaaa tcatcacaaa aaaaagctta aaaacaaaac tttttgaaat
      541 tcaaagtcac cctactttac atcaaatgac ttcaagtgta caaggaaaac ttaaaaaaaa
      601 tatttcttta tatcaaattt ttaaagctct ctttccttgt ggttctatta caggtgctcc
      661 aaagcttgaa agtattaaat ttattgaaga attagaacaa agagatcgtg gtatttactg
      721 cggaactata ggtttaatac acaaaaataa aaataaattt agcgtagcca tacgcacctt
      781 agaaaaacaa gatgaaattt atacttatag caccggtagt ggcttggttt gggactcaaa
      841 attcaaagat gaattcgaag aattaaaact taaaagcgcg atcttaaatc cttgtgattt
      901 tcatcttttt gaaaccatgt attttaaaaa ttctcaaatt ttatttttaa aagaacattt
      961 attaaggctt ataaattcag ctcttaaat
//
LOCUS       DARGEX010000178          963 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.179, whole genome shotgun sequence.
ACCESSION   DARGEX010000178 DARGEX010000000
VERSION     DARGEX010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.179"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            357..>963
                     /locus_tag="SF010_001754"
     CDS             357..>963
                     /locus_tag="SF010_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230632.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKK
                     QAIAKLHALLENQNLECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPKEGLGEQSKNQIELKEPIIRLHYKSDRFQKDNLPIYNLL"
BASE COUNT          390 a          133 c          129 g          311 t
ORIGIN      
        1 taaatttaca agatttgcaa gataattcta acaatacttc tttcatctct atgtcaaatt
       61 tgatccatat ttatgataat cattgtgata tttttgcaaa agatagaagt gttttggata
      121 taaaggacat agaagaaaaa tatcaaatag attttaaaag tttagatata aaaatcttcc
      181 taaactccac cctccttaca ggctcaaatg aacttcctaa taatcctttt tactttggag
      241 aattagatca agataacact ataaaacaag atacacctag ttattatttt tctcctaaag
      301 atgaaagcag tggtttagga agacttagta tcttttataa aaatgatgaa ctttgtttgc
      361 ttaattattc tatattagaa aattctttaa atatcaaatt agaatgttta agcaaacaaa
      421 gcttagagta taaagactta atttcaaaca ctttaaaaga acaaaaaacc acacaagtag
      481 ataaaaaaca agctatagct aaacttcatg ctcttttaga aaatcaaaac ctagaatgta
      541 tccatggagg taaagtcata cttaaatcaa acaaaggaaa aacttttaaa gatgatggtg
      601 tgcctataat gctagaaagt gatttattaa actctagtat agtagcttgt cctaatacta
      661 tagcaggtgt aagtgttcct tgtactaaag ttgttaatgt aaaaggatcc ttatctcaaa
      721 agaaagtcaa taatgaatat gtaatcttac aagaactcat ctcagcttgt aaaacagata
      781 aaggctttgc tttaaaagta agctttactc ctactaagtt taaatttgat cacagctttg
      841 atcctaaaga gggcttagga gaacaaagta aaaatcaaat agagttaaaa gaacctataa
      901 taagacttca ttataaaagt gatagatttc aaaaagataa tttacctatc tataatcttt
      961 taa
//
LOCUS       DARGEX010000179          943 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.180, whole genome shotgun sequence.
ACCESSION   DARGEX010000179 DARGEX010000000
VERSION     DARGEX010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.180"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            406..>943
                     /locus_tag="SF010_001755"
     CDS             406..>943
                     /locus_tag="SF010_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230633.1"
                     /translation="MKNIQIYTETFVLKNNAINNKNFALKNGPLGLFRSSPEKINHFE
                     YFLSLIATIMQETNGILEELGDNYYASYKAPTISQTKIIDFILKAQKKEKYILILDKN
                     DFNKYRKDCSFINNQENLAHKIAIGEFRIFIVVYKDMKCLENINNITKIYGYNSKSYK
                     IKDQIWDEQYLGGVCKISQ"
BASE COUNT          380 a          114 c          124 g          325 t
ORIGIN      
        1 caaatggctt tgatatattg cgatattaaa tataaagaca aattatcttt tagccctaat
       61 gaagtttata cttttaatgc ccctagtgtt tatggttgga attttcctaa tatagctatc
      121 aaccctaata ctataaaaat tatgcaagat cttttaggaa aatacactat agatgtttca
      181 gaaaaaatca ctcatattta tgataatggt aaaattgaaa tcattgcttc agctcaatat
      241 ggtgcaagca atgctttagg tatatataca gggaaaaatg atcactctat aaaacctctt
      301 gttaatactc tctattttta ttcctatctt ttagaattag atgctaacta taacaaagtc
      361 aaagataaaa gccttagtga gtgtatagag tatcttaatc attttatgaa aaatattcaa
      421 atttatacag aaacttttgt gttaaaaaat aatgctatta ataataaaaa tttcgctctt
      481 aaaaatggac ctcttggact ttttagaagt tctccagaaa aaatcaatca ttttgaatat
      541 tttctttcat taatagccac cataatgcaa gaaacaaatg gtattttaga agagcttgga
      601 gataattatt atgcaagcta taaagctcct accattagtc aaacaaaaat catagatttt
      661 attttaaagg cgcaaaaaaa agaaaaatac attttaattc ttgataaaaa tgattttaat
      721 aaatacagaa aagattgttc ctttattaat aatcaagaaa acttagctca taaaattgcc
      781 attggggaat ttagaatttt tattgtggtt tataaagata tgaaatgtct tgaaaatatt
      841 aataatataa caaaaatata cggatataat tcaaaaagtt ataaaataaa agatcaaatt
      901 tgggatgagc aatatttagg tggagtttgt aaaatatcac aag
//
LOCUS       DARGEX010000180          916 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.181, whole genome shotgun sequence.
ACCESSION   DARGEX010000180 DARGEX010000000
VERSION     DARGEX010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.181"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(27..902)
                     /gene="zupT"
                     /locus_tag="SF010_001756"
     CDS             complement(27..902)
                     /gene="zupT"
                     /locus_tag="SF010_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEG8230634.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNYYNSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMMIMALSLNLLEY"
BASE COUNT          358 a          166 c          134 g          258 t
ORIGIN      
        1 aaacacttaa aaacaaaaaa taattttcaa tattcaagta aatttaaact taaagccatt
       61 atcatcattc ctgcgataag tccatataaa ctatcatgag ccttatcata agtttttgca
      121 gcgggcaaaa gctcatcaag agatataaaa accataattc ctgcaatcac agcaaaactt
      181 atagctaaag taagatcgcc tataaaaggc aataaaatca aagctccaac aaaagcaccc
      241 aaaggctctg caaaacccga aagagctgaa taaataaaag cttttttctt atctcctgta
      301 gcatggtaaa ttggcaaact cacagccaaa ccttctggga tattgtgtat agccacagct
      361 atagctatag caattcctaa agtaagatta tcaagacttg aaataaaagt agcaaaacct
      421 tctgggaaat tatgtatagc aatagccaaa gctgtaaaaa tccctgtacg ttttaaagct
      481 ttagtattga tctgatgcaa cttttctcca ggatgaaatt tcggaggatt ttgtcctttt
      541 tggggcaagg gacaaatttt taactcgctt aaatcctctt taggctcgtg aggattgaca
      601 tcttcgggga ttaatttatc aatcaataaa gatattaaaa ttccaccaaa aaaacaagcc
      661 aatcctaaaa gttcggccca atgtgaatta taataatttt taaaatcttt aagagcagtg
      721 ggtaaaattt ccataaaaga aatgtatatc attactccag ctgaaaaacc aagccctaaa
      781 gaaagcaccc ttaaatcatc ttttctagaa aaaaaggcta ttatagaacc tatagccgta
      841 gaaaaacctg caaaaagagt caatagcatt gcgataaaaa tttgttcaaa tgtaaattgc
      901 atttattaat tcttaa
//
LOCUS       DARGEX010000181          907 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.182, whole genome shotgun sequence.
ACCESSION   DARGEX010000181 DARGEX010000000
VERSION     DARGEX010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.182"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..460
                     /locus_tag="SF010_001757"
     CDS             <1..460
                     /locus_tag="SF010_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230635.1"
                     /translation="LKSLELKKCTMYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHA
                     YNEALQILQDFANGIYNTSKDKTGRYIEDKNKTRRLLEKLNVIGQNNLKAMYMGINGN
                     EESLKAIGKRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            479..>907
                     /locus_tag="SF010_001758"
     CDS             479..>907
                     /locus_tag="SF010_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230636.1"
                     /translation="MSETYKIYTPNGIAVKVDKETNKIYFVESLDSHPPAKGNYTEEY
                     SKALFEAHNIKRNSPYKDYKPQYLDPEFYTGQSSTLLEFKEWQNIYLKDPIKGAIAPW
                     TKAEKAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYEAIGA"
BASE COUNT          397 a          128 c          142 g          240 t
ORIGIN      
        1 gttaaaatct ttagaactta aaaaatgcac catgtatcaa cttccttgta atcatccttt
       61 gtttaaagag tttagaaata aagaaaagca aattagtgct tttaaaaagg atgaagatag
      121 tcctattcat gcttacaatg aagctttaca aattttacaa gattttgcta atggaattta
      181 caatacaagc aaagataaaa caggaagata tatagaagat aaaaataaaa ccagaagatt
      241 actagaaaaa ctcaatgtta taggacaaaa caatcttaag gctatgtata tggggataaa
      301 tggaaatgaa gaaagcttga aagctatagg caaaagagaa aataacacta gcaaagcaag
      361 cgcaaatgct gatatcacat cagaaacaaa aactccacct aacttcatag gcagattagc
      421 tactactata atcatagaag atggtttata tatgggataa attaagaaag gataaataat
      481 gagtgagact tataaaattt atacacctaa tggaatagct gtaaaagtag ataaagaaac
      541 aaacaaaata tattttgtag aaagtttaga ttcacatcca ccagcaaagg gcaactatac
      601 cgaagaatat tccaaagctt tgtttgaagc acacaacatt aaacgaaact ccccctacaa
      661 agactataaa ccccaatacc tagatcctga attttataca gggcaaagtt ctactttact
      721 tgaatttaaa gaatggcaaa acatttattt aaaagatcct ataaaaggag ctatagctcc
      781 ttggactaaa gcagaaaaag cttattataa atctttaaaa actaaaagag aaagatataa
      841 atatttagca ataagaagtg gattaagatc tgtggttata gatatacctt atgaagctat
      901 aggagct
//
LOCUS       DARGEX010000182          883 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.183, whole genome shotgun sequence.
ACCESSION   DARGEX010000182 DARGEX010000000
VERSION     DARGEX010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.183"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..195)
                     /locus_tag="SF010_001759"
     CDS             complement(<1..195)
                     /locus_tag="SF010_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230637.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGK"
     gene            complement(224..811)
                     /locus_tag="SF010_001760"
     CDS             complement(224..811)
                     /locus_tag="SF010_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEG8230638.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSHVKGVTIGYGHLIGQNEWDLYKNG
                     ITLREADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
BASE COUNT          262 a          158 c           96 g          367 t
ORIGIN      
        1 ttttccatta tttttattga cacccacata tacaacctta tcacaagtta tattaccctc
       61 tggacataga tttaaaattt ttatccaaaa cttttcattt tcataggtac attgctctag
      121 tggagtaaaa tcctcttgtg ctaacaaata agtactaaaa aataaaaaca ataatatatt
      181 tttaaaaatt accatttttc ataacctcct tgagtgtaaa gctttattca gcatttctcc
      241 tattaattag tccctgcatt actttatttt gacttttgtt ccacgccatc caagcttcct
      301 ttaatgtttt gtaacccgtt ttctctgcat tgatgatttt ggcaacaaaa gagtttttaa
      361 aattatcaat ccctatatta aaacataata taaccaagtc atcaaattca ttctgtgcca
      421 aggaagagtt tattgaattt tttacagcat tttcaaaggg taacaaatcg cttttaaaca
      481 atttatccgc ttctcgtaaa gtaataccat ttttatacaa atcccattca ttttgcccta
      541 taagatgtcc atatccgata gttacacctt taacatgtga agtaatttct tttccatttt
      601 gatcattata aggtttgagt cttagcttct ctatattttt taaaagattt tgaccatcat
      661 tgcttagatg agtgattttt tcttgggtat tgttttcact agaacttata ttattgcttt
      721 ttgtagtgtt tgtgtatttt gtgccattat ttatatttac atctttattt tttgctttta
      781 ttttgttttc actaacccca tttaccacca caaatttacc aacataaagc tcttgttttc
      841 tatcttcatc ttctaagatt tcatctagtc aaggtgatag aat
//
LOCUS       DARGEX010000183          873 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.184, whole genome shotgun sequence.
ACCESSION   DARGEX010000183 DARGEX010000000
VERSION     DARGEX010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.184"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            61..>873
                     /locus_tag="SF010_001761"
     CDS             61..>873
                     /locus_tag="SF010_001761"
                     /inference="COORDINATES: protein motif:HMM:NF019552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HEG8230639.1"
                     /translation="MMWNIFGETKEHSIGYQEFNLKQTLIYLKELNTFFNKNNNKLYA
                     LFGYFFNKKLITSKLLKETSRKFLGFMLTNKKLYFPIGDSIREPSVEFLSKIFFPNKK
                     IMDINEILYPYSVMNGSYSSESYFIYRNDSFGEYVHFACTCNWNSDAHKQNDELHFCL
                     QLGDDIIFDDCGYTDFLSINQYNELASEFSHSSITINNHNYIPKKKTNNKSKILSSRA
                     NLFGFKVVMQHSRIKKCDICRIINFNSKSYILEINDEIVVENDLIGEIINFSF"
BASE COUNT          342 a           80 c          118 g          333 t
ORIGIN      
        1 tgttataaaa ataatatatt tttattgcca atattatata ggtcttatat tactttttgt
       61 atgatgtgga atatttttgg agaaacaaag gaacattcta ttggatatca agaatttaat
      121 ttaaaacaaa ctttaatata tttaaaagaa ctaaatacgt tttttaataa aaataataat
      181 aaattatacg ctttatttgg ttattttttt aacaaaaaac taataacatc aaagctttta
      241 aaagaaacaa gcaggaaatt tttaggattc atgttgacca ataaaaaatt atattttcca
      301 ataggtgata gcataagaga gccatctgtt gaatttttat ctaaaatctt ttttccaaat
      361 aaaaaaataa tggatataaa cgaaattctc tatccgtatt ctgttatgaa tggtagttat
      421 tcaagtgaat cttatttcat atataggaat gattcttttg gagaatatgt gcactttgca
      481 tgtacttgta attggaattc tgatgctcat aaacaaaatg atgaattaca tttttgtttg
      541 caattgggcg atgatattat ttttgatgat tgtggttata cagatttttt atctataaat
      601 caatataatg aattagctag cgaatttagt cattctagta taactattaa taatcacaat
      661 tatattccta agaaaaaaac taataataag tctaaaatac ttagttcaag ggcaaattta
      721 tttggattta aagtggtaat gcaacatagc agaataaaaa aatgtgatat ttgtagaata
      781 attaatttta acagtaaatc atatattctc gaaataaatg acgaaatagt tgttgagaat
      841 gatttaattg gtgaaataat taattttagt ttt
//
LOCUS       DARGEX010000184          865 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.185, whole genome shotgun sequence.
ACCESSION   DARGEX010000184 DARGEX010000000
VERSION     DARGEX010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.185"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..775)
                     /locus_tag="SF010_001762"
     CDS             complement(<1..775)
                     /locus_tag="SF010_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8230640.1"
                     /translation="MEKFIERLLEEDIKFEKDVNNGLSDINIFDALNIETKENYHSKF
                     IAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRIDI
                     LITLSDKRYIIIENKIYAKDQKNQLKDYINFVRKNIKNIKDCYKNILTIYLHQDECAS
                     PSDYSLGNFTIKTNLIKDKNENNVSYYLKMDYIWIKEWIDECIKIYEEKSIKDQKFIL
                     DIQNIIFTLNQYKSILQWYMTDEYTQRDDVLEFIFQNNIK"
BASE COUNT          290 a          123 c           55 g          397 t
ORIGIN      
        1 tttttatatt gttttgaaaa ataaattcta gtacatcatc tctttgagta tactcatctg
       61 tcatatacca ttgtaaaata cttttgtatt gatttagagt aaaaataatg ttttgtatat
      121 caagaataaa tttttgatct ttgattgatt tttcttcata tatttttata cactcatcaa
      181 tccattcctt aatccatata taatccatct tcaaataata gctaacatta ttttcatttt
      241 tatctttaat caaatttgtc tttattgtaa aatttcccaa actataatca ctaggactag
      301 cacactcatc ttgatgcaaa tatatagtca atatgttttt ataacaatct tttatatttt
      361 tgatattttt tcttacaaaa ttaatataat ctttcaattg atttttttga tcttttgcat
      421 aaattttatt ttctattata atatatcttt tatcacttaa tgttattaaa atatctatcc
      481 ttctattatc ttttatgcag gcttctgttt ctacgctttt tatatcttct atgtttaaat
      541 tttcaaattt cgtatttact aaactcttac caagtttttc taaaaatacc tttgcaaaat
      601 ttttttgata atgatcctta tttatatcaa ttaaataagc tataaattta gaatgataat
      661 tttcttttgt ttcaatattc aaagcatcaa atatatttat atcactcaaa ccattattca
      721 catctttttc aaatttaata tcttcttcaa gcaacctttc aataaatttt tccatgtatc
      781 actttccaaa ttttatacaa ttttacatgt aaataaattt ttaattacaa actaaaaaaa
      841 ctgattatta attttatagg caagt
//
LOCUS       DARGEX010000185          843 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.186, whole genome shotgun sequence.
ACCESSION   DARGEX010000185 DARGEX010000000
VERSION     DARGEX010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.186"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            103..>843
                     /locus_tag="SF010_001763"
     CDS             103..>843
                     /locus_tag="SF010_001763"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8230641.1"
                     /translation="MCKISVIIPIYNVEKYLDECLKSVINQTYKDLDIILVDDGSTDN
                     SLNIAKEYAKKDERIFLIAKGNGGLSSARNAGLEFIKGTKLRDFFENEENIISYKQSN
                     TFKNSTKELTKEEINKNFTKLSKNIIQTKLKNLNDFIIQDLPDNIIHFLDSDDYLELD
                     CIEKCVNEMSKDDIDICTHNIKEFLEEEQVFRQKAECDIYLNCKYTKNISGIDFFKKN
                     NICEFYFAWQGSFRAKLLNIYKLRFTYGI"
BASE COUNT          348 a           76 c          130 g          289 t
ORIGIN      
        1 gtattttaaa aataaattta attgaatgtg ttataattat cgcttagaat accatgttgg
       61 agtattggta ttgttaagct taaaatttaa taaagaatta atgtgtgtaa aatttccgtc
      121 ataatcccaa tctataatgt agaaaaatac ctagatgagt gtttaaaaag cgttataaat
      181 caaacttata aagatctaga tattatttta gtagatgatg gtagtactga taatagctta
      241 aatatagcta aagaatatgc caaaaaagat gaaagaattt ttcttattgc aaaaggaaat
      301 ggtggcttaa gttcagctag aaatgcgggt ttggaattta taaaaggcac taaattaaga
      361 gatttttttg aaaatgaaga aaatattatt agttataaac aatcaaacac ttttaaaaat
      421 agtacaaaag aacttacaaa agaagaaata aataaaaact ttacaaaact tagtaaaaat
      481 ataatccaaa caaagcttaa aaatcttaat gactttatca ttcaagattt acctgataat
      541 attattcact ttttagattc cgatgattat ttagagcttg attgtattga aaaatgcgta
      601 aatgagatga gtaaagatga tatagatatt tgcacacata atattaaaga attccttgaa
      661 gaagagcaag tttttagaca aaaagcagag tgcgatattt atttaaattg taaatacact
      721 aaaaatatca gtgggattga tttttttaaa aaaaataata tttgtgagtt ttattttgct
      781 tggcaaggaa gctttagagc aaagttgtta aatatttata agcttcgttt tacttatggg
      841 att
//
LOCUS       DARGEX010000186          836 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.187, whole genome shotgun sequence.
ACCESSION   DARGEX010000186 DARGEX010000000
VERSION     DARGEX010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.187"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>836
                     /locus_tag="SF010_001764"
     CDS             <1..>836
                     /locus_tag="SF010_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230642.1"
                     /translation="ENIFAQALFNFYAGAYNNGEVNYNTLNIELKHPLEIANNFLGYN
                     QHSFYGDFATKGVNHNTINIKNDLTTTDLSQSYKDALNIVAGRTLEGNADYNKVYINN
                     SMSTLPVYIYTAKKNLLNNQDFYPSSANNNKVSIKDFASFRNLTVLTEAKEASYNTIN
                     YNNVQSITDASNIDKGSKIIIRALDKANHNTIDIKNYSSNAADNAYLIMAYNEAAYNK
                     IIINDTLFGVASDKREGILSIIAGLSNNGHDNTLIINNLNLDEYKNNNSVFIAPSAIT
                     GL"
BASE COUNT          319 a          126 c          111 g          280 t
ORIGIN      
        1 gagaacattt ttgctcaagc tttgtttaac ttctacgcag gagcttataa taatggagaa
       61 gtaaattata ataccttaaa catagaatta aaacatcctt tagaaatcgc taataacttc
      121 ttaggttata accaacattc tttttatggt gactttgcaa ctaaaggagt taatcataat
      181 accattaaca ttaaaaacga tcttaccaca accgatcttt ctcaaagcta taaagatgct
      241 ttaaatattg tagctggtag aaccttggaa ggcaatgcgg attataataa agtttatatt
      301 aataattcta tgtcaacctt acctgtatac atttatacag ctaagaaaaa ccttcttaat
      361 aatcaagact tttatcctag tagtgctaat aacaataaag tatcgattaa agattttgct
      421 tcttttagaa atctaactgt attaacagaa gccaaagaag cttcttataa tactataaat
      481 tataacaatg ttcaaagcat tactgatgca agtaatatag ataaaggttc taaaatcatc
      541 ataagagctt tagataaagc caatcataat accatagata taaaaaacta ttcttctaat
      601 gcagctgata atgcttattt gattatggct tataatgaag ctgcttataa taaaatcatt
      661 atcaatgata ctttatttgg tgtagcttca gataaaagag aaggaatttt aagtattata
      721 gctggacttt caaacaatgg ccatgataat accttaatca taaacaatct caatcttgat
      781 gagtataaaa ataacaattc tgtttttata gctccttcgg ccattacagg tttaag
//
LOCUS       DARGEX010000187          786 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.188, whole genome shotgun sequence.
ACCESSION   DARGEX010000187 DARGEX010000000
VERSION     DARGEX010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.188"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..277
                     /locus_tag="SF010_001765"
     CDS             <1..277
                     /locus_tag="SF010_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004083801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230643.1"
                     /translation="LAYFDKSLDGSIGKNGYAKIGYGNRIDLGIYIYYKNPNNKTLTF
                     KNINKIYFRPIWKNYAPNIYGNEGNMDFRLKLDGEIDCRSLLGELYG"
     gene            270..635
                     /locus_tag="SF010_001766"
                     /pseudo
     CDS             270..635
                     /locus_tag="SF010_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935932.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          314 a           95 c          121 g          256 t
ORIGIN      
        1 cttagcttat tttgataaga gtttagatgg tagtatagga aaaaatggtt atgcaaaaat
       61 aggttatggt aatagaatag atttaggtat atatatttat tataagaatc caaataacaa
      121 aacattaact tttaaaaata ttaataaaat atattttaga ccaatatgga aaaactatgc
      181 accaaatatt tatggtaatg agggtaatat ggattttaga ttaaagcttg acggtgaaat
      241 agattgcaga agcttattag gagaattata tggataataa acaacaaatc aataaactaa
      301 gggacatggc agaacttgca caggcaagtt atggatattt tcattatgtt gataataaat
      361 ttgatataaa agatgaagat aaaattgtta cctttgaaaa tgttttagat attacctata
      421 aaaactctaa aattattgat gaaagaggat ttaaaatcgg caagctcgat ggcgacttct
      481 ccccactcca agctaaacaa ttcttttctc gctatgattt attaatccat caaccaaata
      541 cagagtcaag cttttctgct actttgtttt acgataaaca aaaagatgaa tttataatag
      601 gatttagggg aactgaagtt tcttttaaag atttaaaagc gacatgggaa accgctttag
      661 atacaaccca agacttagtc ttatctctca atggcaatct tcaatcttct tttcttttag
      721 aatttttaga acaagtaaat aaaataatca aaaataaaca caaaagaatt atatttgtag
      781 gacatt
//
LOCUS       DARGEX010000188          778 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.189, whole genome shotgun sequence.
ACCESSION   DARGEX010000188 DARGEX010000000
VERSION     DARGEX010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.189"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            28..606
                     /locus_tag="SF010_001767"
     CDS             28..606
                     /locus_tag="SF010_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230644.1"
                     /translation="MYEKLNDFAYEKKPNKDFKIQEVKLVQFSQENKDCLELLIEAGQ
                     VRILNSYNSCQKLSKDESFQKFLNEDFLKLYKNNGYLINENLQNLENTMQDIMIYYKL
                     RYSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELTRHDSRMAMKIYGI
                     ENLDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
     gene            complement(594..734)
                     /locus_tag="SF010_001768"
     CDS             complement(594..734)
                     /locus_tag="SF010_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230645.1"
                     /translation="MKNLSIQEKKDLDNCVFQNLGRQDTFTLSAIFKNFYLKIKAFIY
                     SK"
BASE COUNT          322 a           81 c          100 g          275 t
ORIGIN      
        1 agtttatatt ctttaagttt tgctaatatt tatgaaaaat taaatgattt tgcttatgaa
       61 aaaaaaccga acaaagattt taagattcaa gaagttaaat tagtacaatt ttcacaagaa
      121 aataaagatt gccttgaact tttaatagaa gctggtcaag ttagaatttt aaatagctat
      181 aattcttgtc aaaaattatc taaagatgaa agttttcaaa aatttcttaa tgaagatttt
      241 ttaaaacttt ataaaaataa tggatacttg attaatgaaa atttacaaaa tttggaaaat
      301 accatgcagg atattatgat atattataaa ctccgatatt cttttagtaa agatgtaaaa
      361 gatatgagta aaaataagaa tttggatatt ttaaatatag atgaaaaaga cggtggcact
      421 ttactttaca aaatcaataa tcaagcttgc gttggaatag aacttacaag acatgactca
      481 agaatggcta tgaaaatata cggaatagaa aatttggata aagagtgtaa actatttatc
      541 caatcacctt cttttaaaga tctttcctac acaaaaaaag attttaagtg gtattattta
      601 gaataaataa atgctttaat ttttaaataa aaatttttaa aaatcgcgct taaagtaaaa
      661 gtatcttgcc ttccaagatt ttgaaaaaca cagttgtcta agtctttttt ttcttgaatg
      721 cttaaatttt tcattaacct aacctttaaa aatattgcaa gattttatta tagcgaaa
//
LOCUS       DARGEX010000189          777 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.190, whole genome shotgun sequence.
ACCESSION   DARGEX010000189 DARGEX010000000
VERSION     DARGEX010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.190"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>777
                     /locus_tag="SF010_001769"
     CDS             <1..>777
                     /locus_tag="SF010_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230646.1"
                     /translation="SEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQISRIYNNQEEI
                     DLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSKSGLLMNFIY
                     HDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKKMSFDLYLYV
                     NGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRNDFDALKKQYQ
                     NQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSY"
BASE COUNT          336 a          106 c           89 g          246 t
ORIGIN      
        1 attcagaatt tttacaagat gataatgctt atttaagtcg cgatcttatt tcaaaactat
       61 catcaggttt ttcaacagat aatggagaat ttttaggcca aatttcaaga atttacaaca
      121 atcaagaaga aattgatttg gcattaagta atatcacaaa tttaaatact ttaatgttag
      181 ataataaaat aactaatttt cactttgata aagccataga aaacacttct tctaatgaaa
      241 ttttaaaacc ttatttaact aaaaatgcag aagtatcaaa atctggtctt ttaatgaatt
      301 ttatctacca tgatataaaa actcaaaacg aaaaagaatt taactttttt atgaaacctg
      361 ccactttaga actaagctct catcaaaatt tacaaaaaat tctcaagggc gaaacagata
      421 tagaagatta catcaaaaaa gaaaatgaaa aaaagatgag ttttgatctt tatctttatg
      481 tgaatggcgt agataaaaaa acaagtactc aagataaact atctgtattt tttcaacaat
      541 atattaacta ccaaaaagat atggatttaa gagaatttgc aaattcaagt tcaatatttc
      601 aaatttatat cgatcaaaat cgcaatgatt ttgatgctct taaaaaacaa tatcaaaacc
      661 aaagtcaaga tacgcaaaga ttagaagaag caaatcaact acgttctagc tctatagaaa
      721 attttttaga tcgtcgtcaa aaacaagcaa atataaataa aattttaaac tcttata
//
LOCUS       DARGEX010000190          765 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.191, whole genome shotgun sequence.
ACCESSION   DARGEX010000190 DARGEX010000000
VERSION     DARGEX010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.191"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>765
                     /locus_tag="SF010_001770"
     CDS             <1..>765
                     /locus_tag="SF010_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEG8230647.1"
                     /translation="FQINLDKIFNDILKYNIKDLEEIQTRVKYYNQINEFFTPTAKEK
                     IGKFPFKSTSYAFDAYEISKYFKDEFLWNKEFGDVRHTFKEATICKSRSLENNINNIL
                     LKLDKNRHFCFLKDNINYENKKDIAIFRGAVYQNHRKEFFDSYFGRTFCDIGDTSKQP
                     SQWEKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNSLVLAPKITCETWFMEGTLK
                     PNYHFALIDNENLSAVIEYFKSRPKDALEIINNAHQ"
BASE COUNT          322 a           84 c          105 g          254 t
ORIGIN      
        1 tttttcaaat aaatttagat aaaattttta atgatatttt aaaatacaat attaaagact
       61 tagaagaaat acaaactcga gttaaatatt ataatcaaat aaatgaattt tttacaccta
      121 cagcaaagga aaaaatagga aaatttcctt ttaaaagcac ctcttatgct tttgatgctt
      181 atgaaatcag taaatacttt aaagatgaat ttttatggaa taaagaattt ggcgatgtaa
      241 gacatacttt taaagaagca actatttgca aatcgagatc tttggaaaat aatataaata
      301 atattttatt aaaacttgat aaaaataggc acttttgctt tttaaaagat aacataaact
      361 atgaaaataa aaaggatata gcaatattta gaggagcagt atatcaaaat catcgaaaag
      421 aattttttga ttcttatttt ggtagaactt tttgcgatat aggagatact tcaaaacaac
      481 ctagccaatg ggaaaaaaac tttttaaaca aaaaagaaca aatgaaatat aaatttataa
      541 tttctttaga gggtaacgat gtagcaagca acttaaaatg ggctatgaat tctaattctt
      601 tagttttagc tccaaaaata acttgcgaaa cttggtttat ggaaggaact ttaaaaccaa
      661 attatcactt tgctttgatt gataatgaga atttgtcagc agtaattgaa tattttaaaa
      721 gtcgcccaaa agatgcattg gaaattatta ataatgctca tcaat
//
LOCUS       DARGEX010000191          755 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.192, whole genome shotgun sequence.
ACCESSION   DARGEX010000191 DARGEX010000000
VERSION     DARGEX010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.192"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            123..418
                     /locus_tag="SF010_001771"
                     /pseudo
     CDS             123..418
                     /locus_tag="SF010_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
     gene            394..561
                     /locus_tag="SF010_001772"
     CDS             394..561
                     /locus_tag="SF010_001772"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230648.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGGSKL"
     gene            539..745
                     /locus_tag="SF010_001773"
     CDS             539..745
                     /locus_tag="SF010_001773"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230649.1"
                     /translation="MMGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQL
                     KGVKFKCKKCKEAIQFYKKYSENF"
BASE COUNT          334 a           86 c           96 g          239 t
ORIGIN      
        1 ttttatatta tacaaatata aataaaataa ataatttcta attaataata ttttaataaa
       61 atattatgta atatttcact caaatatatt aaattaattt ttaaatacaa aaattaaaga
      121 aggtgctttt agataaacta attccaactt ggaatgaaaa tacagtattc atgacacaat
      181 gattgacatt caacaccaaa aactttgtga acttgcaagc aaggttgaaa gtgctgttta
      241 taaatttgta aaacgagaag aactcaaaga aattttaaca gaacttttta actatatgaa
      301 agaacatttt agtaatgaag aagattatat gcaagaaatt cattatcctt atttaaatga
      361 acacaaaatc atgcataaaa tatcattcgt gatatgtctt atcttataca aaacataaaa
      421 accactaatg atttaaaaga gaagctttac acagtttcta aaaaatggct tttagaacat
      481 atactctata aagatgtgaa agttgaacaa tacagaagat cttctttaac ttctgaagat
      541 gatgggggaa gtaagctttg aagaagtcaa agaagaaaaa gatgatgaaa atacagttta
      601 tctttataca tgcgaatgcg tagaacaaat gcatgatgta ccatttggaa ttcatcaaaa
      661 aattcaactt aagggcgtaa aatttaaatg taaaaaatgc aaagaagcca tacagtttta
      721 taaaaaatat tcagaaaatt tctaattaac tattt
//
LOCUS       DARGEX010000192          715 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.193, whole genome shotgun sequence.
ACCESSION   DARGEX010000192 DARGEX010000000
VERSION     DARGEX010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.193"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(115..642)
                     /gene="tpx"
                     /locus_tag="SF010_001774"
     CDS             complement(115..642)
                     /gene="tpx"
                     /locus_tag="SF010_001774"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG8230650.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
BASE COUNT          252 a          148 c           74 g          241 t
ORIGIN      
        1 ttacacaaaa taaatatcaa aaataatcaa cttaacaatt aaaatataat caacttaaaa
       61 taataaaaaa atgaagatat aaaaattaag ccctaagaat gggcttaatc aaaattaatg
      121 gcaaccacaa ccaccgcagc agctagaacc accaaaaaat gcatcaagtt ttgcaatatc
      181 tggcatttct gtgatttcat ttacaagttc tttatatgcc actttaccct ctttaatcac
      241 aaatacggca cgagctaaaa gcccttctaa agcaccttca tttatcaaaa caccatattt
      301 ttcaccaaat tcttttgcca caaaatcact tgcaacactt aaattttcaa taccttctgt
      361 actgcaaaat cttcccatag caaaaggtaa gtccatactt actacaatca cttcagcacc
      421 attgtaactg gctacttttt tattaaattc tctagcctct gtagcacaaa ctggtgtatc
      481 taagcttgga acacttaaaa tgatttgagt tttacccgct gcaccgattt caatcacgct
      541 taaatcttta gctttaagat ttaccttagg agcatctgct ccaacttcta ctgaatttcc
      601 tttaagtttt acaggatttc ctttaaaatt tactgtactc atttaatttc cttttttgat
      661 attttaaaca ttattgcaat taatgtttta ggagtgatta tatcctataa atatt
//
LOCUS       DARGEX010000193          708 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.194, whole genome shotgun sequence.
ACCESSION   DARGEX010000193 DARGEX010000000
VERSION     DARGEX010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.194"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>708)
                     /locus_tag="SF010_001775"
     CDS             complement(<1..>708)
                     /locus_tag="SF010_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230651.1"
                     /translation="EDKIFLKFQELFDNFILKDANEIIPFEEYFSDDRGAGVAAFSDF
                     FRFNLLYLRGGVWVDLDMVCLNHYDYDKKEYIFSKEIDNDLSKARITTSLLKFPKQSE
                     FGKLIIDEAKKIVDDNKIIPWGIIGPWFLAKWVKEYDLEKHALDYKDTCQISCGNTRD
                     FIDKKIFDENRLCLHLFSEMWRIYKMNKNHFYKSCIYGFLLQKHNILDLCLKLNYNLS
                     FCDKHYDKFLPFINIKNK"
BASE COUNT          263 a          114 c           70 g          261 t
ORIGIN      
        1 tttatttttt atattaataa aaggaaggaa tttatcataa tgtttatcgc aaaaactaag
       61 attataattt aatttaagac ataaatcaag gatattgtgc ttttgaagta aaaatccata
      121 aatacacgat ttataaaaat gatttttatt cattttataa attctccaca tttcagaaaa
      181 taaatgcaaa caaagtctgt tttcatcgaa aattttttta tctataaaat ctctagtatt
      241 accacaagaa atttgacaag tatctttata gtctagagca tgtttttcta aatcatattc
      301 tttaacccat ttagctaaaa accaaggacc tataataccc caaggaatta ttttgttatc
      361 atcaacaatc ttttttgctt catctataat taattttcca aattcacttt gttttggaaa
      421 tttaaggagt gaagttgtga ttctagcttt gcttagatca ttatcaattt ccttagaaaa
      481 aatatattct tttttatcat aatcataatg gtttaaacac accatatcaa gatccaccca
      541 tacccccccc ctgagataaa gtagattaaa cctaaaaaaa tctgaaaaag cagctactcc
      601 agctccccta tcatcgctaa aatattcttc aaaaggtatg atttcatttg catctttaag
      661 tataaaatta tcaaacagct cttggaattt taaaaaaatt ttatcttc
//
LOCUS       DARGEX010000194          690 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.195, whole genome shotgun sequence.
ACCESSION   DARGEX010000194 DARGEX010000000
VERSION     DARGEX010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.195"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..242
                     /locus_tag="SF010_001776"
     CDS             <1..242
                     /locus_tag="SF010_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HEG8230652.1"
                     /translation="VANFKISALQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGIL
                     SIALPKLDKGRWELKLKFYANQETVGFFSYELNAQ"
     gene            239..>690
                     /locus_tag="SF010_001777"
     CDS             239..>690
                     /locus_tag="SF010_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230653.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKD"
BASE COUNT          269 a           72 c          102 g          247 t
ORIGIN      
        1 atgttgcaaa ttttaaaatt tctgcattac aaaatataaa ttctaatgat ttaaaagttc
       61 aagttcttct tacaagacca ttcactaaaa attttgatca aaagttagaa ggacaagtta
      121 aaaatggaat tttaagtatc gctttaccta aattagataa aggtagatgg gagcttaagc
      181 taaagtttta tgcaaatcaa gaaacagtgg gtttttttag ctacgaatta aatgctcaat
      241 gaaattaaga atttttagct cttcaaggca aattagagaa tattataatc aaaaaaaaca
      301 gcaaaatgct ttattagata gtgctattca tataggtgaa tttttagata aagtttgttt
      361 gagcaatttt cataaagcaa gttcttatga aagtttgctt ttaatgcaag aagcttgtct
      421 aaaaagtaag gatttagaaa aaaaactagg aatttcggta gaattttttg cttttttgaa
      481 aaataacgaa tatctttttt ctttttttaa agaactgagt ttggaaaaaa aaagcataga
      541 agatcttaaa aacaatgatt attatgccac ctataatgaa catttggaaa ttttagatga
      601 ggtatataag aattatcttg ctttgcttga aaagaattct ttttatgatg atctttcttt
      661 acctaaaaat tacactctta ataaagattt
//
LOCUS       DARGEX010000195          681 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.196, whole genome shotgun sequence.
ACCESSION   DARGEX010000195 DARGEX010000000
VERSION     DARGEX010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.196"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..315)
                     /locus_tag="SF010_001778"
     CDS             complement(<1..315)
                     /locus_tag="SF010_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230654.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQS"
     gene            complement(476..>681)
                     /locus_tag="SF010_001779"
     CDS             complement(476..>681)
                     /locus_tag="SF010_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230655.1"
                     /translation="VQNQITSTINNITVTQVNVKSAESQIRDVDFASESANYSKANIL
                     AQSGSYAMAQANSSQQNVLRLLQ"
BASE COUNT          200 a          121 c          119 g          241 t
ORIGIN      
        1 gctttgacca tcttgagcag cttgagtcgc tttagtcttg atggtatcta agattttaag
       61 ttgctcatcc atagccttat ctgcagtttg caagatacct atagcatcat taccattgtt
      121 tatagcttga cctaaagttg ctgcttgtga acgcaaagaa tctgctatcg ccatccctga
      181 agcatcatct gctgcggagt tgattctaag acctgaactg agtctactta aagacttgtc
      241 aagctctcta gcattaacaa ctgaatttgc atgtgcgttc aatgcaccga tgttggtgtt
      301 tattctaaaa cccattttaa atcctttcaa aatattgcat cgaaaagatt aaagcaagaa
      361 gtgttccaag ttttgattca aattgaaatt ttatttagaa ataaaaaaag cctagtatta
      421 ctactaggct tggatttgta taaattacag taaacgctaa agaatgtttt atatactact
      481 gtagtaatct taaaacattt tgctggcttg aatttgcttg agccatagca taagaaccac
      541 tttgagccaa tatatttgct ttagagtaat ttgcactctc gcttgcaaaa tctacatctc
      601 tgatttgtga ttctgctgat ttaacattta cctgggttac agtaatgttg tttatagtcg
      661 atgtgatttg attttgcaca g
//
LOCUS       DARGEX010000196          678 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.197, whole genome shotgun sequence.
ACCESSION   DARGEX010000196 DARGEX010000000
VERSION     DARGEX010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.197"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            116..>678
                     /locus_tag="SF010_001780"
     CDS             116..>678
                     /locus_tag="SF010_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230656.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYIELQLEKESDKTLNWSYVEC
                     NSEKKMRSLLDVDCRSIEAKDLKFIASFKGNICGFHLPISRDNEPIKDIKDYKYYIIV
                     FAYDEKKAIPSLEDFHIVIDMSFRVGVGRDEDVKESKLRNDFNSDIIQTNCIFSVLEA
                     VEFLKACQSFKEKAKETNNYEFFKNYP"
BASE COUNT          268 a           63 c          129 g          218 t
ORIGIN      
        1 gaggatttaa gtaagcaggt taagtttgtg cagagtgagg gggaaaatat aatctcactc
       61 aaagtggctt accctgaaaa aatagataat aaaattatat ttgtaggaaa agtttatgaa
      121 taaaacacta atatttcatg aaaattccca tattgattta aatgcttctt ttgcaccagg
      181 gacttatata gaattgcaat tagaaaaaga aagcgataaa acgctaaatt ggagttatgt
      241 agagtgcaat agtgagaaaa aaatgcgatc tttgttggat gttgattgtc gttctattga
      301 ggctaaagat cttaaattta tagcgagttt taaaggtaat atttgtggat ttcatttacc
      361 tataagtaga gataatgaac caataaaaga tataaaagat tataaatatt acatcatagt
      421 ctttgcttat gatgaaaaaa aggctatacc tagtttagaa gattttcata tagttataga
      481 tatgagcttt agagtaggag ttggaaggga tgaggatgta aaagaaagca aactaaggaa
      541 tgattttaat agtgatataa ttcaaacaaa ttgtattttt agtgttcttg aggctgtaga
      601 gtttttaaaa gcttgccaaa gttttaaaga aaaagcaaaa gaaacaaata attatgaatt
      661 ttttaaaaat tatcccca
//
LOCUS       DARGEX010000197          674 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.198, whole genome shotgun sequence.
ACCESSION   DARGEX010000197 DARGEX010000000
VERSION     DARGEX010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.198"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>674
                     /locus_tag="SF010_001781"
     CDS             <1..>674
                     /locus_tag="SF010_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8230657.1"
                     /translation="NLGTFAARNNGVKHSNGEYLMFLDPDDFLELEACEKLILLINTY
                     KICQFSFTQISNGIKLKSVFKDTLKNLKEFKGIYWNIWTLFVKKDFYLKSLEELFLID
                     KKLLVAEDMLAVFFLINNLKDDEYLQVDLHLYNYVDNSFSITKRRKNKEKIQECLDDY
                     FYILKYIKENKILKENLKSYVLIYLQIDILKFLFNNKKINYFKYKLLKKIYKCKMLFL
                     KLNFSK"
BASE COUNT          272 a           53 c           87 g          262 t
ORIGIN      
        1 aaaatttggg tacttttgca gcaagaaata atggtgttaa acattcaaat ggtgagtatt
       61 tgatgttttt agaccctgat gattttttag agcttgaggc ttgtgaaaaa ttaatacttt
      121 taataaatac ttataaaata tgccaatttt cttttactca gattagtaat ggaattaaat
      181 taaaatcagt atttaaagat acacttaaaa atttaaaaga atttaaagga atttattgga
      241 atatctggac tctgtttgta aaaaaggatt tttatttaaa atccctagaa gaactttttt
      301 tgatagataa aaaactcctt gtagccgaag atatgcttgc agtttttttc ttgataaaca
      361 atttaaaaga tgatgaatac ttgcaagttg atttgcattt gtataattat gtagataatt
      421 ctttttcgat tactaagcga cgaaaaaata aagagaaaat tcaggaatgt ttggatgatt
      481 atttttatat tttaaaatat ataaaagaaa ataaaattct taaagaaaat ttaaagtcat
      541 atgttttgat ttatttgcaa attgatattt taaaattttt atttaataat aaaaaaataa
      601 attattttaa atataaatta ttaaaaaaaa tttataaatg taaaatgcta tttttaaaac
      661 ttaatttctc caag
//
LOCUS       DARGEX010000198          651 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.199, whole genome shotgun sequence.
ACCESSION   DARGEX010000198 DARGEX010000000
VERSION     DARGEX010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.199"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            59..>651
                     /locus_tag="SF010_001782"
     CDS             59..>651
                     /locus_tag="SF010_001782"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230658.1"
                     /translation="MVLYVKNNKPMVVIEDIKIFSIAYLKSYVYANIKEHQSSKIKII
                     SKINFFGKINLISKEIATGLYYKIIEKNKKLLLCQDGPTKIFDINKKVVFDDSNGDNI
                     GSQINSYVTINSQFGRNYLIFSTWRNTKNYPRSCLYFIRNETKRLIKKYDNKKYYDEL
                     KWSGYKSYRTGHISCNEKIIFCNKYDHPVIIEFSNYF"
BASE COUNT          285 a           62 c           87 g          217 t
ORIGIN      
        1 taaaataagt aaaacaaaga gtttatttct atttgatact tatgataaaa ataaatcaat
       61 ggtgttgtat gtaaaaaaca ataaaccaat ggtagttata gaggacataa aaattttttc
      121 tatagcatat ttgaaatcat atgtgtatgc aaatataaaa gaacatcaaa gttccaaaat
      181 aaaaataata tcaaaaatta acttttttgg taaaattaac ttgatttcta aggagattgc
      241 tactggttta tattataaaa taatagaaaa gaataaaaaa ttactgttgt gccaagacgg
      301 tcctactaaa atttttgata taaataaaaa agttgttttt gatgattcca atggtgataa
      361 tataggatct caaattaatt catatgtaac tataaatagt caatttggta gaaactactt
      421 aatatttagc acttggagaa atacaaaaaa ctatccaaga tcatgtttat atttcattag
      481 aaacgaaact aaaagactta taaaaaaata tgataataag aaatattatg atgaattaaa
      541 gtggagcgga tacaaaagct atagaactgg acatattagt tgcaatgaga aaataatttt
      601 ttgcaataag tatgatcacc ctgtaattat cgaattttca aattattttt a
//
LOCUS       DARGEX010000199          626 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.200, whole genome shotgun sequence.
ACCESSION   DARGEX010000199 DARGEX010000000
VERSION     DARGEX010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.200"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            50..>626
                     /locus_tag="SF010_001783"
     CDS             50..>626
                     /locus_tag="SF010_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230659.1"
                     /translation="MKKYFNIFKIFTNKTNAKFGLGVCSVVLSSSVCFAAVQATSKDG
                     KIFYISEHSFKDNQVYDPQAEIFKKINGKNFYASKSKYPISNLTMIHNNPKSGNKNLS
                     KLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFIPFIVIAYAQNTNATNNKLILEN
                     GELSSVYFCKPSIGDCGVPNNSQKGDRFKYLI"
BASE COUNT          228 a           84 c           93 g          221 t
ORIGIN      
        1 ataatcaatt tgcgataaat caaaaggttt tattttagtg agaaatgaga tgaaaaaata
       61 ttttaatatt tttaaaattt ttacaaataa gacaaatgca aaatttggct tgggcgtttg
      121 tagtgtggtt ttatcttctt cggtttgttt tgcggcggtt caggctacaa gcaaggatgg
      181 aaaaattttt tatatttctg aacattcttt taaggataat caagtttatg atcctcaagc
      241 agaaattttt aaaaaaatta atggaaaaaa tttctatgct tctaagtcaa aataccctat
      301 atcaaattta actatgattc ataataaccc taaatctgga aataaaaatt tatccaagct
      361 tgaaatttta actccggata cttcaaaaga agagatcata acagctttta gcactttagg
      421 aaccgtatct tcagatactc aagccgttcc tagttctttt atacctttta ttgtaatagc
      481 ttatgctcaa aatacaaatg caacaaataa taaacttata ttagaaaatg gagaattatc
      541 ttctgtgtat ttttgcaaac caagcatagg ggattgtgga gtacctaata attctcaaaa
      601 aggcgatcgt tttaagtatt taatta
//
LOCUS       DARGEX010000200          567 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.201, whole genome shotgun sequence.
ACCESSION   DARGEX010000200 DARGEX010000000
VERSION     DARGEX010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.201"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>567
                     /locus_tag="SF010_001784"
     CDS             <1..>567
                     /locus_tag="SF010_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230660.1"
                     /translation="TGSIGVGAGILHTENYGRLSLVKNDGRDINISGTGLSAIGMGAT
                     DMISQSSVSLRESKGQISAANADAMGFNAYNGGGAKQIIFASSIAGFMSQAGSGFSAG
                     SGFSVGSGKNYSAILSASIQIVSSAASISSTYVVSAGSGFSAGSGNSQFAALRISTVS
                     AHDETAGVTTLKGAMAVMDIAETAITNLD"
BASE COUNT          157 a           93 c          133 g          184 t
ORIGIN      
        1 acaggtagca taggtgtagg agctggtata ttgcacactg aaaattatgg aaggttatct
       61 ttagttaaaa atgatggtag agatatcaat ataagtggaa caggtctttc agctataggt
      121 atgggtgcta cagacatgat ttctcaatct tcagtatctc taagagagtc aaaagggcaa
      181 atttcagcag ccaatgctga tgctatgggc tttaatgctt ataatggcgg cggcgctaag
      241 caaattattt tcgcttctag tattgcagga tttatgtctc aggctggttc aggcttctct
      301 gctggttcgg gattttcagt aggtagtggt aaaaattatt cagccatttt atcagcttct
      361 atacagatag tatctagcgc agcttctatc agtagcacct atgttgtttc tgctggttca
      421 ggtttctctg ctggttcagg taattctcaa tttgcagctt taagaataag tacagtaagt
      481 gctcatgatg aaactgcagg tgtaactaca cttaagggtg caatggctgt gatggatata
      541 gcagaaactg ctattaccaa tcttgat
//
LOCUS       DARGEX010000201          566 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.202, whole genome shotgun sequence.
ACCESSION   DARGEX010000201 DARGEX010000000
VERSION     DARGEX010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.202"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>566)
                     /locus_tag="SF010_001785"
     CDS             complement(<1..>566)
                     /locus_tag="SF010_001785"
                     /inference="COORDINATES: protein motif:HMM:NF028199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230661.1"
                     /translation="DILNSWYLSCNDKLDNPWIFHDHATALRAFNISKFLNIMKNYIS
                     EDQFLLLQKILAIDVNKLLMDEFYSKNTNHGLDQSLSLYKASFFLEVDNILDIRNVAI
                     ERINSELKFAFCDDGGHKENSPAYLYYGVSQVLRALDIGYKYEKENTKIYFPLDLLKK
                     SCLVLGYFVQFNEKMPLIGDTVEFKINN"
BASE COUNT          225 a           83 c           51 g          207 t
ORIGIN      
        1 aattatttat tttaaattca acagtatcac caataagagg cattttttcg ttaaattgaa
       61 caaaatatcc taaaaccaaa caagattttt tcaacaaatc taatggaaaa tatattttag
      121 tattttcttt ttcgtattta taaccaatat ctaaagctct taaaacttga gaaacgccat
      181 aatataaata ggctggacta ttttccttat gaccaccatc gtcgcaaaaa gcaaatttga
      241 gctcactgtt aattctttct attgcaacat ttcttatatc caatatatta tcaacttcta
      301 aaaaaaaaga tgctttatat aaagataaac tttgatctaa tccatgattt gtatttttag
      361 aataaaactc atccattaaa agtttattaa catcaattgc taaaattttt tgtaaaagca
      421 aaaactgatc ttcacttata taatttttca taatatttaa aaatttagat atattaaaag
      481 ctcttaatgc tgtagcatga tcatgaaata tccaaggatt gtctaattta tcattacaag
      541 ataaatacca agaatttaaa atatca
//
LOCUS       DARGEX010000202          553 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.203, whole genome shotgun sequence.
ACCESSION   DARGEX010000202 DARGEX010000000
VERSION     DARGEX010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.203"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            45..455
                     /gene="perR"
                     /locus_tag="SF010_001786"
     CDS             45..455
                     /gene="perR"
                     /locus_tag="SF010_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG8230662.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT          218 a           63 c           82 g          190 t
ORIGIN      
        1 aattttatta ttatttttac ttaaaaaagt aaggaataaa taaaatggaa ttactacaaa
       61 tgcttaaaaa acatgagtta aaagctactc cgcaaagact atgtgtttta aaaattttaa
      121 aaagacatga gcatcctaat attgatgaat tatatacaga aattaaaaaa gaataccctt
      181 caatctcttt agcgacggtt tataaaaatc ttaatacttt acaagaacaa ggtttagttg
      241 ttgaaatcaa tgttttaaat caaaaaactt gttacgatat ctatgaagaa gaacatattc
      301 atgttgtttg cgccaaatgt ggtggtatag aggatttaag ttttaaagat gctaagcttt
      361 atgaatatca agagcattta gaaaaaaaga taggcaatct cgtcaatcat ctgtctgttt
      421 gtgcttatgt tgatagttgc aaaaagtgtc attaagcaaa ataaggttaa aataacccat
      481 atattttaag ggttatttta atggtttatg aaattcaaaa aaacttttta ctatctgatt
      541 gcactctttt aga
//
LOCUS       DARGEX010000203          538 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.205, whole genome shotgun sequence.
ACCESSION   DARGEX010000203 DARGEX010000000
VERSION     DARGEX010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.205"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            110..>538
                     /locus_tag="SF010_001787"
     CDS             110..>538
                     /locus_tag="SF010_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230663.1"
                     /translation="MDRELFITRLAFINNDEIDTIDKNSSIAYLKALYQCENSIAINY
                     NQEELFTQATAINNLGYNSTFTKIFILDKEKLNDTYLDARKRLYKSINTLKEKRNEKI
                     KDIQDYLNKEISLQDNLNNQSFNTKENDVNLILNEVFNIEQ"
BASE COUNT          239 a           70 c           58 g          171 t
ORIGIN      
        1 ttcctatatt gatctcaagt gtttatgtga tatatgaaaa tctttaaaga ctatcaaaaa
       61 tttaatatat ttgatataat attcatttat cttaaatatt tagaaaaaaa tggatagaga
      121 attatttata acaaggcttg cttttataaa caatgatgaa atagacacaa tagataaaaa
      181 ttcatccata gcatacttaa aagccttata tcaatgtgaa aattccatag ctataaatta
      241 taatcaagaa gagcttttca cccaagctac cgctataaac aatctaggct ataattctac
      301 tttcacaaag atcttcatcc tagataaaga aaagctcaat gatacctatc ttgatgctag
      361 aaaaaggctt tataaatcta tcaatacttt aaaagaaaaa agaaatgaaa aaataaaaga
      421 tatccaagac tatttaaata aagaaatttc cttacaagat aatctaaata atcaaagctt
      481 taatactaag gaaaatgatg ttaatttaat tttaaacgaa gtatttaaca tagagcaa
//
LOCUS       DARGEX010000204          535 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.206, whole genome shotgun sequence.
ACCESSION   DARGEX010000204 DARGEX010000000
VERSION     DARGEX010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.206"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            27..428
                     /locus_tag="SF010_001788"
     CDS             27..428
                     /locus_tag="SF010_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8230664.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQCHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT          228 a           59 c           57 g          191 t
ORIGIN      
        1 atataaatat aaaagtactc aaaaccatga tttataatga aaaaattatt tcaatgaata
       61 atgatctttt agatcatcaa cataaagaac tttttgaaat ttctaaaaaa ctctctttaa
      121 tgaaccaatg tcatgttgga acaaaagaat taaaaattgt cttaagagag ttgttgataa
      181 tgatcaatag acatttttca gatgaagaag cctttatgag aaaaatagaa tatccttata
      241 tcaaccatca tacaagaatt catagaaaaa ttatcttaga aattgaagaa attatcatca
      301 gtgaagctaa atttgtaaat ataatgaccg aaaaattaaa tctcgttgtt caagatttta
      361 tctttaaaca tacagccaaa gaagattcaa agatagtaaa gtattacgaa gaaaaattta
      421 agaaatagta tttctcattt ttgctatata aaattcacaa aatatttcac tttaaaattt
      481 tactttagca ttttattttt gttataattt ttaacctaat ttttataaat ttttg
//
LOCUS       DARGEX010000205          535 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.207, whole genome shotgun sequence.
ACCESSION   DARGEX010000205 DARGEX010000000
VERSION     DARGEX010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.207"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..334)
                     /locus_tag="SF010_001789"
     CDS             complement(<1..334)
                     /locus_tag="SF010_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230665.1"
                     /translation="MLNFFDEKTNFDKLNGEFGELQTKNFIQRYEVQFHQPNTTSGFS
                     ATLFYDKEKDEFIVGFRGTETDNFISSIQDIVQDITLSLNGNIQSSFLLEFLEQVNKI
                     IKNKHKRII"
BASE COUNT          177 a           81 c           57 g          220 t
ORIGIN      
        1 atataattct tttgtgtttg tttttgatta ttttatttac ttgttctaaa aattctaaaa
       61 gaaaagaaga ttggatattg ccattgaggg atagagttat gtcttgaact atatcttgaa
      121 tcgagctaat aaaattatca gtttcagttc ccctaaatcc tactataaat tcatcttttt
      181 ctttatcata aaacaaagta gcactaaagc cacttgtagt gttaggctga tgaaattgaa
      241 cctcatatct ttgaatgaaa tttttagtct gtaattctcc aaattctcca tttagtttat
      301 caaaatttgt cttttcatca aagaaattta acatttttga ttgccaagca tcatcttgtc
      361 ttaaatcaat caatacttct ttatctttat gtttttgact gacaacatgt tctaaattta
      421 cctttatttc tctatagcct ctaagagaat tttcttcttg aattttttct tgattaaaat
      481 ctaactcaaa tatatttcta gtatttaaaa aatcaaaata aaaataacta gccca
//
LOCUS       DARGEX010000206          516 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.208, whole genome shotgun sequence.
ACCESSION   DARGEX010000206 DARGEX010000000
VERSION     DARGEX010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.208"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            1..351
                     /locus_tag="SF010_001790"
                     /pseudo
     CDS             1..351
                     /locus_tag="SF010_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
BASE COUNT          242 a           40 c           78 g          156 t
ORIGIN      
        1 acattttcta aagatgattt taaaattata aaggataata taaataataa tatatcctta
       61 aaccaaattc tttatgggtc tccagggaca ggaaaaactt atcatactat agataaggct
      121 ttggaaatct tgggtgaaaa tttagaaagt agagatgaga aaaaagctaa atttgatgag
      181 tatgtaaaaa atggacaaat agtatttact acttttcatc aaagctatgg atatgaagaa
      241 tttgtagaag gtataaagcc tcacatagat agcgaagaaa attctaaaga aataaaatat
      301 gaaataaaag atggaatttt taaagaactt tgcgaaaaag ctttagaaaa tagggatagt
      361 ataaaaaatt ttaattttta tatagataaa ttaaaagaaa aagtaaaaat agatgataat
      421 aatccagaaa aatattttga attaccaaat actaaatatt ctattcaata tagaaatgga
      481 aaaacattta gaattaaatt tgatgatatg agtaaa
//
LOCUS       DARGEX010000207          514 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.209, whole genome shotgun sequence.
ACCESSION   DARGEX010000207 DARGEX010000000
VERSION     DARGEX010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.209"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            7..405
                     /locus_tag="SF010_001791"
     CDS             7..405
                     /locus_tag="SF010_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015453654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230666.1"
                     /translation="MEISANQNTIIHKDEIRNVKGNKKEVVEGHYNINISDKMQVLSE
                     KEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTIHELKADSEATIQVGETIINAK
                     PDCVIIKAGGVEVIIDSNGLVVKGGELKAE"
BASE COUNT          213 a           54 c          100 g          147 t
ORIGIN      
        1 aaagatatag aaataagtgc taatcaaaac actattatcc ataaggatga gataagaaat
       61 gtgaagggaa ataaaaagga ggtggttgag ggacattata atattaatat cagcgataaa
      121 atgcaagtat taagcgagaa agagatggat tataaaagca aagacaatat tctttttaca
      181 agtaatgaat ccataggatt tgaaagtgat aaaaatacaa gcatggtagc tgataatatc
      241 acaactattc atgagttaaa agccgatagc gaagcgacta tacaggtagg agaaacaatt
      301 attaatgcaa aacctgattg tgttatcatt aaagcaggtg gagtagaagt aattatagac
      361 tctaatggac ttgtggttaa aggtggagag cttaaagcag agtaaaggat aaacaataaa
      421 aaaacctttt tacaaactta aaagatttta tataccttgt ggtgtgctta tagctttgat
      481 tatttttata agcttaactt atcatttttt acaa
//
LOCUS       DARGEX010000208          498 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.211, whole genome shotgun sequence.
ACCESSION   DARGEX010000208 DARGEX010000000
VERSION     DARGEX010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.211"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            135..338
                     /locus_tag="SF010_001792"
     CDS             135..338
                     /locus_tag="SF010_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230667.1"
                     /translation="MLLNTPCRGIVDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
BASE COUNT          231 a           61 c           61 g          145 t
ORIGIN      
        1 aaatggttga tacttttaga agcaaatgaa atagataaaa ttttacttca ataaatttaa
       61 gttttatctt attttataca atttttaata taatctaaaa ttataatttt aaatgagaaa
      121 tcaggagctt gctaatgtta cttaacacgc cttgcagggg aatagtagat acaaattttg
      181 aaagcaaaag aattagcata acttcaactt taaaatttca agaaaaaaaa gaaaaagtag
      241 aagctaaggc tgagaaagaa gaagcaaata aagacaatag caattctaca aacacaaata
      301 ccaataaaaa agataaactt ttggatatat ctgcttagtc taaaatatac tataactata
      361 tctccttaaa gaatacgcaa taaatgattt tttgatttta ttaagctttt aaaacatcga
      421 aaaaaggaaa aattaaaaaa cacaaaaaca atatcccaaa gtccatagct tagaagaaga
      481 ccttgcgata cttaaaaa
//
LOCUS       DARGEX010000209          494 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.212, whole genome shotgun sequence.
ACCESSION   DARGEX010000209 DARGEX010000000
VERSION     DARGEX010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.212"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            81..287
                     /locus_tag="SF010_001793"
     CDS             81..287
                     /locus_tag="SF010_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230668.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIRK"
     gene            complement(290..>494)
                     /locus_tag="SF010_001794"
     CDS             complement(290..>494)
                     /locus_tag="SF010_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230669.1"
                     /translation="FPSGMSYKYGILKGSMHIILQGKTSSTMLFPFLKSMIYKNKSEN
                     SSEKIFTLMINQKKHYKLIANLS"
BASE COUNT          204 a           59 c           55 g          176 t
ORIGIN      
        1 tacaaaataa aaaaacccgt aaaagttttt tgaagtattt aaatgatata tttcaaaatc
       61 tagttttaaa aaggaaaaat atggaatttt tagcatttat ttttttgatt attatatttt
      121 tatttgtagt ctttatcatc gttactcgct atgaaaaaaa gataaaatta ctcaaccaaa
      181 acatacaaaa tatgaaagaa gatatagccg atcttaaaga aacaactcaa aaaaatcgct
      241 ctttaattga aaaaaatcgc tctaatatag aaaatataag aaaataaaac taagaaagat
      301 ttgcgataag cttatagtgt tttttctgat ttatcattaa agtaaaaatt ttttcacttg
      361 aattttcgct tttattttta taaatcatac tttttaaaaa cggaaaaagc atcgtactag
      421 aagttttacc ttgtaaaata atatgcatag agccttttaa aattccgtac ttatagctca
      481 taccgcttgg aaat
//
LOCUS       DARGEX010000210          492 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.213, whole genome shotgun sequence.
ACCESSION   DARGEX010000210 DARGEX010000000
VERSION     DARGEX010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.213"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            339..>492
                     /locus_tag="SF010_001795"
     CDS             339..>492
                     /locus_tag="SF010_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8230670.1"
                     /translation="MIISFLDDDIDKPYVSGSLYNGANPSLVNLPFNDHQTSLSSKTI
                     GVNEEGY"
BASE COUNT          203 a           73 c           59 g          157 t
ORIGIN      
        1 gggtgcaaat aaaataaaat tgcgtttaga aaatacacaa aacagcgaaa aagaactcaa
       61 tatcatagaa gtaaatttag ataaaaaata gattttaata acaaaaataa gcaatttctt
      121 tttctactca aatttagact atttgtgtta aaataataaa tataaaaatt aaaaacatag
      181 tggatttata ccaaattata aacaccataa actcaacccc caaaaggatc atcaatgtcc
      241 cttaattctt acatgagtct taatatatca aattctactt caaatcccct accctttaaa
      301 atcactaaag cccttatcaa agaaagttag gagatgaagt gattatttct tttttagatg
      361 atgatataga taaaccttat gtaagtggaa gtttgtataa tggggctaat ccaagtttag
      421 taaatcttcc ttttaatgat caccaaactt ctctttcttc taaaaccata ggtgttaatg
      481 aagaaggtta ta
//
LOCUS       DARGEX010000211          472 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.214, whole genome shotgun sequence.
ACCESSION   DARGEX010000211 DARGEX010000000
VERSION     DARGEX010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.214"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>472)
                     /locus_tag="SF010_001796"
     CDS             complement(<1..>472)
                     /locus_tag="SF010_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8230671.1"
                     /translation="SYENLNNAFIRIDQEIQKLKLNQQLHQNYKLKTHVSFLPFKNEY
                     QNFGIMQAMDILNAIFYIKENSPFKLMRGGGIRTILFGNSYGGYLANLCAKIAPWSID
                     FILDNSSFVNLFGNIFRLIGFGKEIDFTRYHGTYDDTLFKNIFLYLSDKTYWNN"
BASE COUNT          181 a           66 c           39 g          186 t
ORIGIN      
        1 ttattattcc aataagtttt atcacttaaa tataaaaata tatttttaaa taaagtatca
       61 tcatatgttc catgatatct agtaaaatcg atttcttttc caaaacctat aagtctaaaa
      121 atatttccaa acaaattaac aaaagaagaa ttatctaata taaaatcaat actccaagga
      181 gctatttttg cacataaatt tgctaaatat ccgccatatg aatttccaaa caaaatcgtt
      241 ctaatacccc cccccctcat tagtttaaat ggagaatttt cttttatata aaaaatagca
      301 tttaaaatat ccatagcttg cattatacca aaattttgat attcattttt aaatggtaaa
      361 aaacttacat gtgtttttaa cttatagttt tgatgtaatt gttgatttaa ttttaatttt
      421 tgaatttctt gatctattct tataaaagca ttatttagat tttcataaga at
//
LOCUS       DARGEX010000212          463 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.215, whole genome shotgun sequence.
ACCESSION   DARGEX010000212 DARGEX010000000
VERSION     DARGEX010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.215"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>463
                     /locus_tag="SF010_001797"
     CDS             <1..>463
                     /locus_tag="SF010_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8230672.1"
                     /translation="FTQAKNLEQEQNTSSNLVSVSIAPQAFFVKKIAANTLDVNVILP
                     PNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFSKLQIVNMQKNIALI
                     QTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTLIQKYPQNENL"
BASE COUNT          186 a           76 c           57 g          144 t
ORIGIN      
        1 tttcacacaa gctaaaaatt tagagcaaga acaaaatact agtagcaatt tagttagtgt
       61 cagtatagca cctcaagcat tttttgttaa aaaaatagct gcaaatactc tagatgtcaa
      121 tgttattttg cccccaaata gcaatgagca taattttgaa tttaaaccaa gtactatgaa
      181 aaaacttgaa aaaagtgata tttatttcac tataggctta gaatttgaaa aagtttttac
      241 ggataaattt aaacaaaatt tttcaaaact tcaaattgta aatatgcaaa aaaacatagc
      301 tttgattcaa actcatgata cacacgaaca ctctcatgag catgaacacc acgaacatga
      361 gcattttgat cctcatactt ggctagatcc tattttagtc caaactatgg ctttaaatat
      421 ttatgacacc ttgattcaaa aatatccaca aaatgaaaat tta
//
LOCUS       DARGEX010000213          446 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.216, whole genome shotgun sequence.
ACCESSION   DARGEX010000213 DARGEX010000000
VERSION     DARGEX010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.216"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(19..>446)
                     /locus_tag="SF010_001798"
     CDS             complement(19..>446)
                     /locus_tag="SF010_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8230673.1"
                     /translation="NLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHL
                     TRIDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGT
                     LYIFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
BASE COUNT          165 a           46 c           56 g          179 t
ORIGIN      
        1 aaataagcaa aattttgctt attttgtttg ttttttagct tttttacctt catctaaatc
       61 aaattcttta gtcttttttg aataataaaa tataaaacct acaatcaaaa tacagcaaat
      121 caaagaaaaa atataaagtg taccataagg gctatctttg aaaaaaagat tattagtatt
      181 cattccaaaa aatcctacga tcaaatttaa aggtaagaaa atagaagaaa gtatgcttaa
      241 aagataaata cttttattca ttttttcatt tttaattgca cttgttaatg tataaagagt
      301 atcaattctt gttagatgtt ctttggtatt tttatttaag atgctgatgg ataaatttag
      361 aatttttaaa tgttttttgt attgtgcttg ttcgctaagc aaaagattga aagcttcact
      421 tagaagatta atttgcttta gatttt
//
LOCUS       DARGEX010000214          433 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.217, whole genome shotgun sequence.
ACCESSION   DARGEX010000214 DARGEX010000000
VERSION     DARGEX010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.217"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>433
                     /locus_tag="SF010_001799"
     CDS             <1..>433
                     /locus_tag="SF010_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230674.1"
                     /translation="DAMEFLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFF
                     ENEILKLEFAFENMIDQLKIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEF
                     AWMKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDV"
BASE COUNT          166 a           37 c           90 g          140 t
ORIGIN      
        1 gatgcaatgg aatttttacg taaaaatcat ttatatcaaa aaactccaga aggagaaatt
       61 tgtgagcgaa gctatggtgt tttagttaga ataggaaatt tatggaaatt tgttccttat
      121 gcgagatttt tcgagaatga aattttaaaa ttagaatttg cttttgaaaa tatgattgat
      181 cagcttaaaa tatttgctag cagcgaagag gaaaaagctt atatagaata ttttgaaaaa
      241 ttaaaattag cgttttgtga aaaagatgaa gatagggtta taaaagcttg gcaagaagct
      301 gaatttgctt ggatgaaagt aaaatcacct ttacaagtgg gacatccctt agaatattat
      361 gaagataatt atactcatgc ggtggcatta gaatgggata taagaataga agatgaaaat
      421 gattttgatg ttt
//
LOCUS       DARGEX010000215          432 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.218, whole genome shotgun sequence.
ACCESSION   DARGEX010000215 DARGEX010000000
VERSION     DARGEX010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.218"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..395
                     /locus_tag="SF010_001800"
     CDS             <1..395
                     /locus_tag="SF010_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG8230675.1"
                     /translation="FLTRVDFCDNKRSEKNCSLLDLAKYELDLYFTHKLRKFSIPVLI
                     QGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFRAVGNANSKNQIPIFIPCHRV
                     IANNGIGGYNGGLEIKRFLLENEGVNLK"
BASE COUNT          160 a           46 c           73 g          153 t
ORIGIN      
        1 aatttttaac tagagtcgat ttttgtgata ataaaagatc agaaaaaaat tgtagtttgc
       61 ttgacttagc aaaatatgaa cttgatttat attttactca taagcttaga aaatttagca
      121 ttcctgtttt gatacaaggt acagattttg aatcaaaggt ttataaggct ttaatgaaaa
      181 ttccttatgg caaaatagct acttataaag atatagcaga aaaaattaat catccaaaag
      241 cttttagagc cgttggaaat gcaaattcta aaaatcaaat tcctattttt ataccttgtc
      301 atagagttat tgcaaacaat ggcataggag gatataatgg agggcttgaa ataaaaagat
      361 ttttgcttga aaatgaagga gtgaatttaa aataagcttg gggtttgatt ttctttgttt
      421 tcaaattctt gt
//
LOCUS       DARGEX010000216          387 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.219, whole genome shotgun sequence.
ACCESSION   DARGEX010000216 DARGEX010000000
VERSION     DARGEX010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.219"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(226..369)
                     /locus_tag="SF010_001801"
     CDS             complement(226..369)
                     /locus_tag="SF010_001801"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230676.1"
                     /translation="MEENYISRKINTKEKVNILKFIHNGIHLDTVFNLAYSNDFVNYN
                     LGC"
BASE COUNT          150 a           50 c           35 g          152 t
ORIGIN      
        1 cagcttgtat tttaacataa taaggatgaa gtaccttttt aacaaaatga aaatcataaa
       61 aatctagtat aatgattttt atttgctctt tggaaaaatt ctcctcattt atccatctta
      121 aagacattaa atgatgtgga tatgagctaa ttttatatgg atttttagcc caatcaaatg
      181 gcaaattaaa ctcaattcgt tcatttctat aattaataaa catgattaac aacctaaatt
      241 ataattcaca aaatcattag aataagctaa attaaaaaca gtatccaaat gtataccatt
      301 atgaataaat tttaaaatat ttactttttc ttttgtattg atttttctag atatataatt
      361 ttcttccata tgtatatcaa tattatc
//
LOCUS       DARGEX010000217          363 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.221, whole genome shotgun sequence.
ACCESSION   DARGEX010000217 DARGEX010000000
VERSION     DARGEX010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.221"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(5..80)
                     /locus_tag="SF010_001802"
     tRNA            complement(5..80)
                     /locus_tag="SF010_001802"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(45..47),aa:Arg,seq:tct)
     gene            complement(100..175)
                     /locus_tag="SF010_001803"
     tRNA            complement(100..175)
                     /locus_tag="SF010_001803"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(140..142),aa:Lys,seq:ttt)
     gene            complement(180..256)
                     /locus_tag="SF010_001804"
     tRNA            complement(180..256)
                     /locus_tag="SF010_001804"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(220..222),aa:Asp,seq:gtc)
BASE COUNT          103 a           90 c           89 g           81 t
ORIGIN      
        1 tgattggcga cccctagagg atttgaacct ctgtttccac acagagagag tgttgtcctg
       61 ggccactaga cgaaagggtc ataaccctaa caataaaaat ggtgtcccgt gttggattcg
      121 aaccaacggc cccctcctta aaagggagat gctctaccgg ctgagctaac gagacaatat
      181 ggcgcagcgg acggggctcg aacccgcgac ctccgccgtg acagggcggc attctaacca
      241 gctgaactac cgctgcatcc aaagtaaaga agtagagatt ataaaaccta tttatgattt
      301 tataaaatgg tggtcactat aagactcgaa cttatgacat ccaccttgta agggtggcgc
      361 tct
//
LOCUS       DARGEX010000218          300 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.224, whole genome shotgun sequence.
ACCESSION   DARGEX010000218 DARGEX010000000
VERSION     DARGEX010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.224"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>300
                     /locus_tag="SF010_001805"
     CDS             <1..>300
                     /locus_tag="SF010_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8230677.1"
                     /translation="KEIYSFFRKYFNQYLFYFSHKNLEEKISDILIYKENQKIRAALI
                     YTQTLNTNFLDFIAVDRNLKHKNVAFALLNHYFAANTQNKFFKLFVEEKNQKAIN"
BASE COUNT          123 a           41 c           29 g          107 t
ORIGIN      
        1 gcaaggaaat ttatagcttt ttcagaaaat attttaatca atatttgttt tatttttcgc
       61 acaaaaatct tgaagaaaaa atatctgata tacttatcta taaagaaaat caaaaaattc
      121 gcgctgcttt gatctatact caaactctca atacaaattt tttagatttt atagccgtag
      181 acagaaattt aaaacataaa aatgtagctt ttgctttact aaatcattat tttgcagcca
      241 atactcaaaa taaattcttt aaactttttg tagaagaaaa aaatcaaaaa gccattaatt
//
LOCUS       DARGEX010000219          287 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.226, whole genome shotgun sequence.
ACCESSION   DARGEX010000219 DARGEX010000000
VERSION     DARGEX010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.226"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
BASE COUNT          119 a           43 c           33 g           92 t
ORIGIN      
        1 aaagattttc atataccaca tacacactcg caattaataa aaagatatta cacacaaacc
       61 ctataagcca acttaatttt ttgcgttttt ctcctgtgct ataacattta aataaataag
      121 cttgtaataa acaaggaaat atgataaatg tgattactaa aaaaaacata gttgcaaagg
      181 ttaaaaattt aaaataatta cgcactctat attcttgcgg tgataatttt tcaatttctg
      241 gaggatcaag taatacaagc gatttataaa attcaagatc atagcta
//
LOCUS       DARGEX010000220          285 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.227, whole genome shotgun sequence.
ACCESSION   DARGEX010000220 DARGEX010000000
VERSION     DARGEX010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.227"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>285
                     /locus_tag="SF010_001806"
     CDS             <1..>285
                     /locus_tag="SF010_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230678.1"
                     /translation="VKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIK
                     IYGLNMYMGEIKPKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIG"
BASE COUNT          114 a           39 c           41 g           91 t
ORIGIN      
        1 gttaaagact gcacatatag ttttaacaat aaaaaagtct taatttccct aaatcccaaa
       61 cccttacaat ctttagatgt tacaaatcta aagattgtaa atctaggaaa ttataacaac
      121 ttaggaatta aaatttatgg attaaatatg tatatgggcg aaattaaacc taaaatacat
      181 cgattaaatt caacagacta tgaaagtaaa atagttcttg ctgcttgcgt tttagatact
      241 atgcgtttca gggtagaatt tatggataat aataaaccca taggg
//
LOCUS       DARGEX010000221          275 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.229, whole genome shotgun sequence.
ACCESSION   DARGEX010000221 DARGEX010000000
VERSION     DARGEX010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.229"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..158)
                     /locus_tag="SF010_001807"
     CDS             complement(<1..158)
                     /locus_tag="SF010_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230679.1"
                     /translation="MGDSITLSIFWGLILFIASFTVARIYLIALSVLIVFSIINYWMR
                     INIKEFVKS"
BASE COUNT          117 a           42 c           29 g           87 t
ORIGIN      
        1 gattttacaa attcttttat gttaattctc atccaataat ttataataga aaagacaata
       61 agaacgctta gagctataag ataaattctt gcaacagtaa aactagcaat aaacaaaatc
      121 aaaccccaaa aaatagaaag tgtaatgcta tctcccattt aaactcctgt attataaagc
      181 acattataag ctttatcttt aaaatcaagt ttagcaataa aatctttact ataaagttta
      241 aagtccaaac cataaggagt gaatttttga tagtc
//
LOCUS       DARGEX010000222          273 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.230, whole genome shotgun sequence.
ACCESSION   DARGEX010000222 DARGEX010000000
VERSION     DARGEX010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.230"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
BASE COUNT          120 a           32 c           32 g           89 t
ORIGIN      
        1 aataatatta cacacaaacc ctataaacca acttaatttt ttgtgttttt ctcctgtgct
       61 ataacattta aaaaaataag cttgtaataa acaaggaagt ataataaatg tgattgtaaa
      121 aaaaataaaa tttataaaga ttaaaaattt agaacactta tatactatat attcttgtgg
      181 tgatactgga ggaccgagca ttacatatcc tctataagtt tcaagatcat agctaagata
      241 aaatatgata ataatagctg taaaaaagat aat
//
LOCUS       DARGEX010000223          245 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.231, whole genome shotgun sequence.
ACCESSION   DARGEX010000223 DARGEX010000000
VERSION     DARGEX010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.231"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>245)
                     /locus_tag="SF010_001808"
     CDS             complement(<1..>245)
                     /locus_tag="SF010_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8230680.1"
                     /translation="ADINRLMEELDNIANTTSFNGKQLLSGGFTNQEFQIGSSSNQTI
                     KASIGATQSSKIGVTRFETGSQSFSSGTVGLTIKNYN"
BASE COUNT           69 a           39 c           45 g           92 t
ORIGIN      
        1 gttgtagttt ttaatagtaa gtcctacagt gcctgaagaa aaactttgtg aacctgtttc
       61 aaatcttgtt acaccgattt tagaagactg agttgctcct atacttgctt taatagtttg
      121 atttgaactt gaaccgattt ggaattcttg attggtaaaa ccaccactta aaagttgttt
      181 gccattaaat gaagtggtat ttgcgatatt atcaagttct tccatcaaac ggttgatgtc
      241 tgctt
//
LOCUS       DARGEX010000224          221 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.235, whole genome shotgun sequence.
ACCESSION   DARGEX010000224 DARGEX010000000
VERSION     DARGEX010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.235"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..169)
                     /locus_tag="SF010_001809"
     CDS             complement(<1..169)
                     /locus_tag="SF010_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230681.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSN"
BASE COUNT           83 a           35 c           19 g           84 t
ORIGIN      
        1 aatttgattt taaattttca tcaaataaac attcttgcat tgtctttaaa tactcttgta
       61 attttgacaa tctttcttca gaaaatgaaa aaacaaaaag ctctcctaga cattgataat
      121 aaagacttct agctaatctt aatttttcca aatccattaa agctcccatg cattcaaaat
      181 tttcaaaaat agctttaaat tttgcttgaa tgaatattat g
//
LOCUS       DARGEX010000225          218 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.236, whole genome shotgun sequence.
ACCESSION   DARGEX010000225 DARGEX010000000
VERSION     DARGEX010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.236"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>218
                     /locus_tag="SF010_001810"
     CDS             <1..>218
                     /locus_tag="SF010_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230682.1"
                     /translation="LIGDGKLLKEQALSFNGEIKQLDLLALKDEEAFIIDYKTGLAMQ
                     DKHKEQVGTYKIAISEILQKDKVRAFIV"
BASE COUNT           82 a           21 c           44 g           71 t
ORIGIN      
        1 tttgattggt gatggaaagc ttttaaaaga acaagctttg agttttaatg gagaaattaa
       61 acaattagac ttgcttgctt taaaagatga agaagctttt ataattgatt ataaaacagg
      121 tcttgctatg caagataaac ataaagagca ggtaggaact tataagatcg ccattagtga
      181 aattttgcaa aaagataaag tgcgtgcttt tatagttt
//
LOCUS       DARGEX010000226          209 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.241, whole genome shotgun sequence.
ACCESSION   DARGEX010000226 DARGEX010000000
VERSION     DARGEX010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.241"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>209)
                     /locus_tag="SF010_001811"
     CDS             complement(<1..>209)
                     /locus_tag="SF010_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8230683.1"
                     /translation="ELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFDSFEHKEIKIG
                     DITFIGNKIEENRVNHGVFIFYPID"
BASE COUNT           67 a           34 c           19 g           89 t
ORIGIN      
        1 taatcaatag gataaaatat aaacacacca tgattaacac gattttcttc tattttattg
       61 ccgataaaag ttatatcacc tattttaatt tccttgtgtt caaaactatc aaaaaattct
      121 tctattatat attcgcagat gttgctccat ttatgctgga taatatcttt agctttctta
      181 tagttttctt catttaaatt tttaagctc
//
LOCUS       DARGEX010000227          206 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.244, whole genome shotgun sequence.
ACCESSION   DARGEX010000227 DARGEX010000000
VERSION     DARGEX010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.244"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>206
                     /locus_tag="SF010_001812"
     CDS             <1..>206
                     /locus_tag="SF010_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8230684.1"
                     /translation="TANPRNPQLIELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSL
                     DFTTEVKDANGAVEVTTNALGQEI"
BASE COUNT           77 a           33 c           35 g           61 t
ORIGIN      
        1 tcactgctaa tccaagaaac ccacaactta ttgaacttaa aaatgttcta aatagacttc
       61 ttgatgcttt acaggctaga gtaggttctg atatgaatga aattcaaaga gtatttaata
      121 gttataaatc tcttgacttt actactgaag taaaagatgc caatggagct gtagaggtaa
      181 ctactaatgc actaggacaa gaaatc
//
LOCUS       DARGEX010000228          205 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.denovo.245, whole genome shotgun sequence.
ACCESSION   DARGEX010000228 DARGEX010000000
VERSION     DARGEX010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.denovo.245"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            <1..>205
                     /locus_tag="SF010_001813"
     CDS             <1..>205
                     /locus_tag="SF010_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8230685.1"
                     /translation="LYKTLCENKNHKHIIVFENTLELIALAFSLFDFSQEIKSEKLIL
                     FYTPNITTAQLTTLFTHPNIYNCL"
BASE COUNT           78 a           32 c           20 g           75 t
ORIGIN      
        1 ctttataaaa ccttgtgtga gaataaaaat cataaacata tcattgtctt tgaaaacacc
       61 ttagagttaa tagctttagc ttttagtttg tttgatttta gtcaggaaat aaaaagtgaa
      121 aaattaatcc tattttatac accaaatatt acaacagcac aacttactac actttttact
      181 catccaaata tttataattg tctca
//
LOCUS       DARGEX010000229         4334 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37extra_B2-G
            SAMN11268395-rid18062033.guided.112, whole genome shotgun sequence.
ACCESSION   DARGEX010000229 DARGEX010000000
VERSION     DARGEX010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268395
            Sequence Read Archive: SRR8796635
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741579.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741579.1
            Genome Coverage       :: 99x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 18:06:58
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,819
            CDSs (total)                      :: 1,779
            Genes (coding)                    :: 1,715
            CDSs (with protein)               :: 1,715
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 51 of 64
            Pseudo Genes (incomplete)         :: 12 of 64
            Pseudo Genes (internal stop)      :: 14 of 64
            Pseudo Genes (multiple problems)  :: 13 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4334
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268395-rid18062033.guided.112"
                     /isolate="MattSeq37extra_B2-G"
                     /isolation_source="Chicken carcasse"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2016"
                     /collected_by="Lisa K. Williams"
     gene            190..951
                     /locus_tag="SF010_001814"
     CDS             190..951
                     /locus_tag="SF010_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-461"
                     /protein_id="HEG8230686.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFLRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKS"
     gene            complement(1049..1933)
                     /locus_tag="SF010_001815"
     CDS             complement(1049..1933)
                     /locus_tag="SF010_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8230687.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1930..2604)
                     /gene="modB"
                     /locus_tag="SF010_001816"
     CDS             complement(1930..2604)
                     /gene="modB"
                     /locus_tag="SF010_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8230688.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(2597..2998)
                     /locus_tag="SF010_001817"
     CDS             complement(2597..2998)
                     /locus_tag="SF010_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8230689.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2995..3744)
                     /gene="modA"
                     /locus_tag="SF010_001818"
     CDS             complement(2995..3744)
                     /gene="modA"
                     /locus_tag="SF010_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8230690.1"
                     /translation="MKKFIVFFGILFFTLHLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3795..>4334)
                     /locus_tag="SF010_001819"
     CDS             complement(3795..>4334)
                     /locus_tag="SF010_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8230691.1"
                     /translation="KKLQNFITFNKYLKNDILNFKENSNILIFDMNEIAKQDLSKEKF
                     DLIVSNATLQWLDLKRIILSLRDMLNQNGILLLSTFAKQNLKEIKQSTGFGLNYFSLN
                     ELEQIFKVYFNEVKITQELVELSFDNALEVFRHLKLSGVNSLGFYPLNKCFLKDFEEK
                     FQNKLTYHPVFILCKNDIK"
BASE COUNT         1629 a          624 c          562 g         1519 t
ORIGIN      
        1 agtaagcaaa aaactagcat ataaattttc ataaatagta aataaacgat aaaacaaaat
       61 atatttaatt aatggattgt tttaatggtt acaattttag aaaatttcag ttcatgttaa
      121 aggatattta aagaaaataa agctttaaaa agtattttgt ttaaaattat ttaaatagaa
      181 agatatttta tgaaaaaaat aactttattt ttacttttct taaatttagt gtttgggcaa
      241 gataagatat taaataattg gtttaaagag tataatacaa gcggcacttt tgttttttat
      301 gatggaaaaa cttgggcgag taacgacttt ttaagggcta tggagacttt ctctcccgct
      361 tccactttta aaatttttaa tgctctaatt gcacttgata gtggtgtgat aaaaactaaa
      421 aaagaaattt tttatcacta tagaggtgaa aaagtatttt tatcttcttg ggcgcaagat
      481 atgaatttaa gttcagctat aaaatattct aatgttcttg cttttaaaga agtggcaaga
      541 agaattggta tcaaaactat gcaagaatat ttaaacaagc ttcattatgg taatgctaaa
      601 atttccaaga tcgatacttt ttggcttgac aactcactaa aaataagcgc taaagaacaa
      661 gcaattttgc tttttagact ttcacaaaat agcttacctt tttctcaaga agcaatgaat
      721 agtgttaagg aaatgattta tttaaaaaat atggaaaatt tagagctttt tggaaaaaca
      781 ggttttaatg atgagcaaaa aattgcttgg attgtaggtt ttgtgtattt aaaagatgaa
      841 aataaatata aggctttcgc gctaaattta gatattgata aatttgaaga tttatataaa
      901 agagaaaaaa ttttagaaaa atatttagat gaacttgtaa aaaaaagtta aaaatgatgg
      961 ctagtgagta tttcgtaaaa tgcaaaaata cttaattgta tgatttgcgt acacttaaag
     1021 tactcattaa aaaattaaat ttttgctctt atttatcaag ttttcctacg atgatagggt
     1081 taaaggcttt tatggatagc aaaagcgtat cgccgatttt tacatcttga taagctttta
     1141 gaaattcctc ttcactaaga gtgattttaa taatatcttg atttaaaagc aaggttaaaa
     1201 ccactaaaat atcacttttt ttaatttcta gcaaagttgc acttaagcgt aattttgcgc
     1261 tgatatttga atgagtaaaa aattcatttt taggaaaatc tttaataatt tttccgtttt
     1321 taagctctaa aattctatga cttaacttat aaatttcagc tagatcatga cttaccaata
     1381 aagtacttat tttaaaatac tctaaaatct tggttaattc atcttgtaaa ttggcacgca
     1441 ttttaaaatc caaagcactc aaaggttcat ctaaaagcaa gatttttggt tctcttgcta
     1501 aagctcttgc taaagctact ctttgtgcct gccccccact taaatgttta ggataaattt
     1561 tagctaaatt ttcaagcttc attaaggcta aaagctcgct aacctttgct ttagaactag
     1621 cggcataggc gatgttttct tttatattca tatttggaaa aagcgcataa tcttgaaaaa
     1681 caaaaccaat ttttcttttt tgtaaagcta aactaaaatt ttttgaagaa tcaaaccaaa
     1741 gttcattatc tacttctata cgccccaatt taggctttat aagtcccgct atgattttta
     1801 aaagagtggt ttttcctgct ccactttcgc caaaaagtgc agtaattttt cctgattcta
     1861 tatctttttt aaaatttaaa tccagtcttc ctttagcggt attcatagga tgattgatat
     1921 caattcttat cattgaaaac tcattttttt attgataaaa taaagactaa aaagtactaa
     1981 aaaagaaaaa ataaacaata taaaagcata ttgatgggct aagctatagt ttaagatttc
     2041 aagttcatca taaatagcta tactagccac taaagtttca ccttgtttat gtcctcctat
     2101 catcatcacg actccaaatt cacccacagt atgggcaaaa ctcatcgcac aagcactaaa
     2161 aattcctgct ttagaattag gtaaaatcac tctaaaaaga gtataaattt tacttttacc
     2221 taaactataa gaagcatcga gcaaatttgg attgatcgat gaaaaggcac tttgcaaagg
     2281 atttaccata aaaggcaaag aaaaaatcaa agaagcaaaa acaagacctt caaaactaaa
     2341 aaccaaagaa agattaaaat attcttttaa aacttgccct aaaaaactat tagccgaaaa
     2401 agttacaagc aaataaaatc ccaaaacact aggaggtaaa atcaaaggca aggaaataaa
     2461 gctttgaagg attgttttaa aaggaaaacg cacaaaactt aacaaataag ctaaaaaaac
     2521 accgataaaa aaaaggataa aagtcgtgat aaaagcaagt ttaaaagtaa gataaagggt
     2581 ttgtaaaaaa gctggatcaa gcactatgac tccttaatac aatatcattt gcttttacaa
     2641 aacaaagcca ttcttgattt tcacaaattt caagttctaa agctttttct ttggtgataa
     2701 tactagaaag ttcattacct ttaaaatcaa aaaatacctg atataaaagt ttgccttttt
     2761 taatttttgt aattttagct aaaaaagaat tttcaacact taaaagagtt ttgcttgcgc
     2821 taaaacaaag ctcatgctct ttaaaaagaa gttctacact cacaccaatt tttaaatttt
     2881 ctaaagattt taattcaagc attaaaacac taaaaatcac ttctttagaa agtattttaa
     2941 caataactat atcctcttga tttaaaagct cacaaatttg tccttttata aggttcatgg
     3001 tgtgctaaat ccgtattttt taaaaatttc ttttgctttt gaagagccaa taaattcgtt
     3061 aaattcaaag gctaattttt tatccttagc gtattttgtg atgacataac tttgctctaa
     3121 agggctaaaa tactttgcat caattataac agccttaccc ttaggatgat tgatagaaga
     3181 aactaaagaa taagccacta tagctatatc tgaatttttg ctatctacat gtaaaacagg
     3241 cactgagata ttttcgccta aaacgatttt atccttaaga agctcattta aacccaaatt
     3301 ttcaagcact tctttagctg ctactccata aggagctact ttaggattgg ctatgcttag
     3361 atgcgtgatt ttgtttgcct tttcttttaa attttcaacg cctccttgga gtaaattttc
     3421 atccaagcta tacaaagcca aaactcccaa aacataaact tttggtttta ttaaagcatt
     3481 tttatcatca taaatagcct tagcatattt agtatccgct gaaaaaaaga gatcaaattc
     3541 tcttccttgt tttaaaagct cataatattt tccagaagca ccaaaaacca attctatttt
     3601 atcttctgga tgtgttttca aaaactcatc tttaacttca ctcatcgcct ttgaagctga
     3661 agaagctaca aaaatactta aattttgcgc atttagatgt aaggtaaaaa acaaaatccc
     3721 aaaaaatact ataaactttt tcatttagct ttccttgtgt aaaaatttaa tttttggatt
     3781 ataacacaaa aaaatcattt tatatcattt ttgcataaaa taaatacagg atgataagtg
     3841 agtttgtttt gaaatttttc ttcaaaatct tttaaaaaac atttatttaa aggataaaaa
     3901 cctaaagaat ttaccccgct taattttaaa tgtctaaaaa cttctaaagc attatcaaag
     3961 cttaattcta cgagttcttg agtgattttt acctcattaa aatagacttt aaaaatttgt
     4021 tctaattcat ttaagctaaa ataatttaaa ccaaaccccg tactttgttt gatttctttt
     4081 aaattttgtt ttgcaaaagt agaaagaagt aaaattccat tttgatttag catatctcta
     4141 agacttagta taatgcgttt taaatcaagc cattgcaaag ttgcatttga aacaataaga
     4201 tcaaatttct ctttacttaa atcttgtttt gcaatttcat tcatatcaaa aattaaaata
     4261 ttagaatttt ctttaaagtt taaaatatcg ttttttaaat acttattaaa agtaatgaaa
     4321 ttttgaagtt tttt
//
